Query 031503
Match_columns 158
No_of_seqs 160 out of 1251
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 15:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03452 MaoC_C MaoC_C The C-t 100.0 4.4E-34 9.6E-39 203.4 16.3 132 24-155 4-141 (142)
2 cd03453 SAV4209_like SAV4209_l 100.0 2.1E-32 4.6E-37 191.2 16.7 124 27-150 1-126 (127)
3 cd03451 FkbR2 FkbR2 is a Strep 100.0 5.1E-32 1.1E-36 192.9 15.5 133 24-156 6-146 (146)
4 cd03446 MaoC_like MoaC_like 100.0 6.8E-32 1.5E-36 191.0 15.9 129 24-152 4-140 (140)
5 cd03449 R_hydratase (R)-hydrat 100.0 2.4E-30 5.2E-35 179.9 18.2 126 25-152 1-128 (128)
6 cd03455 SAV4209 SAV4209 is a S 100.0 7.5E-31 1.6E-35 182.4 15.2 121 28-151 1-123 (123)
7 cd03454 YdeM YdeM is a Bacillu 100.0 5.6E-30 1.2E-34 181.5 16.1 129 23-152 2-139 (140)
8 PRK13693 (3R)-hydroxyacyl-ACP 100.0 6.8E-30 1.5E-34 181.8 16.1 134 12-152 1-141 (142)
9 COG2030 MaoC Acyl dehydratase 100.0 1.4E-29 3.1E-34 183.4 16.0 132 24-155 19-157 (159)
10 PRK08190 bifunctional enoyl-Co 100.0 1.8E-29 3.8E-34 209.8 18.3 131 24-156 13-145 (466)
11 cd03447 FAS_MaoC FAS_MaoC, the 100.0 6.2E-29 1.3E-33 173.6 16.4 116 34-153 7-126 (126)
12 PRK13691 (3R)-hydroxyacyl-ACP 100.0 2E-28 4.4E-33 178.3 16.9 132 24-156 5-148 (166)
13 PRK13692 (3R)-hydroxyacyl-ACP 100.0 3.6E-28 7.8E-33 175.9 16.5 133 23-155 4-147 (159)
14 cd03441 R_hydratase_like (R)-h 100.0 1.2E-27 2.5E-32 165.9 16.1 118 33-150 6-126 (127)
15 TIGR02278 PaaN-DH phenylacetic 99.9 3E-27 6.6E-32 203.4 14.9 130 24-153 527-662 (663)
16 PRK11563 bifunctional aldehyde 99.9 8.6E-27 1.9E-31 201.2 15.5 130 24-153 539-674 (675)
17 cd03450 NodN NodN (nodulation 99.9 4.3E-26 9.3E-31 163.4 16.1 127 26-152 11-147 (149)
18 PF01575 MaoC_dehydratas: MaoC 99.9 1.4E-26 3E-31 160.8 12.2 100 26-125 5-109 (122)
19 PLN02864 enoyl-CoA hydratase 99.9 1.9E-22 4.1E-27 160.0 14.6 124 24-155 180-308 (310)
20 cd03448 HDE_HSD HDE_HSD The R 99.9 3.9E-22 8.3E-27 138.5 12.9 106 33-147 9-117 (122)
21 PF13452 MaoC_dehydrat_N: N-te 99.9 6.1E-21 1.3E-25 133.7 12.0 120 26-145 2-131 (132)
22 KOG1206 Peroxisomal multifunct 99.8 1.3E-20 2.9E-25 140.5 4.7 89 33-121 155-243 (272)
23 PLN02864 enoyl-CoA hydratase 99.3 3.2E-11 6.8E-16 96.0 13.3 130 25-154 12-157 (310)
24 PRK00006 fabZ (3R)-hydroxymyri 99.2 1.1E-09 2.3E-14 78.1 12.0 92 58-154 46-146 (147)
25 PRK04424 fatty acid biosynthes 99.1 1.2E-09 2.6E-14 81.0 12.1 101 24-152 79-181 (185)
26 COG3777 Uncharacterized conser 99.1 1.1E-10 2.3E-15 88.3 4.3 107 34-149 165-272 (273)
27 cd01288 FabZ FabZ is a 17kD be 99.0 5.8E-09 1.3E-13 72.4 11.7 90 58-152 31-130 (131)
28 PRK13188 bifunctional UDP-3-O- 98.9 3.1E-08 6.8E-13 82.4 12.8 97 55-155 356-462 (464)
29 TIGR02286 PaaD phenylacetic ac 98.8 1.7E-07 3.7E-12 63.9 12.2 80 69-152 30-113 (114)
30 TIGR01750 fabZ beta-hydroxyacy 98.8 1E-07 2.2E-12 67.2 10.9 80 68-152 49-140 (140)
31 cd00493 FabA_FabZ FabA/Z, beta 98.6 1.4E-06 3E-11 60.2 11.5 79 67-150 39-129 (131)
32 COG2050 PaaI HGG motif-contain 98.5 6.8E-06 1.5E-10 58.1 12.2 84 68-156 49-140 (141)
33 PF03061 4HBT: Thioesterase su 98.4 5.2E-06 1.1E-10 52.1 10.0 70 71-144 3-79 (79)
34 PRK10293 acyl-CoA esterase; Pr 98.4 3.9E-06 8.4E-11 59.2 10.3 79 69-152 50-135 (136)
35 PRK10254 thioesterase; Provisi 98.4 6E-06 1.3E-10 58.3 11.0 78 70-152 51-135 (137)
36 cd03440 hot_dog The hotdog fol 98.4 9.1E-06 2E-10 50.6 10.5 79 68-150 14-99 (100)
37 PRK11688 hypothetical protein; 98.4 8.9E-06 1.9E-10 58.4 11.4 79 69-152 55-153 (154)
38 TIGR00369 unchar_dom_1 unchara 98.4 1.1E-05 2.3E-10 55.1 10.9 77 70-151 33-116 (117)
39 cd03443 PaaI_thioesterase PaaI 98.4 1.5E-05 3.2E-10 53.4 11.4 77 70-151 29-112 (113)
40 cd01287 FabA FabA, beta-hydrox 98.3 1.8E-05 3.8E-10 56.8 10.2 83 67-150 47-144 (150)
41 PF07977 FabA: FabA-like domai 98.2 1.9E-05 4E-10 55.6 9.6 79 67-147 45-138 (138)
42 PLN02322 acyl-CoA thioesterase 98.2 6.6E-05 1.4E-09 54.1 12.1 79 70-152 43-133 (154)
43 COG0764 FabA 3-hydroxymyristoy 98.2 5.8E-05 1.3E-09 53.9 11.6 83 68-154 54-145 (147)
44 cd03442 BFIT_BACH Brown fat-in 98.1 9.4E-05 2E-09 50.2 11.2 80 71-154 24-114 (123)
45 cd00556 Thioesterase_II Thioes 98.1 5.6E-05 1.2E-09 49.5 9.2 79 69-151 14-98 (99)
46 cd00586 4HBT 4-hydroxybenzoyl- 98.1 7.3E-05 1.6E-09 49.0 9.6 58 91-152 51-108 (110)
47 cd01289 FabA_like Domain of un 98.0 0.00014 2.9E-09 51.4 10.7 81 70-154 45-138 (138)
48 PRK05174 3-hydroxydecanoyl-(ac 98.0 0.00022 4.8E-09 52.3 11.9 92 61-154 67-169 (172)
49 TIGR01749 fabA beta-hydroxyacy 97.9 0.00033 7.2E-09 51.2 11.5 92 61-154 64-166 (169)
50 PRK10800 acyl-CoA thioesterase 97.9 0.00022 4.7E-09 49.4 10.2 60 91-154 53-112 (130)
51 cd03445 Thioesterase_II_repeat 97.7 0.0017 3.7E-08 42.8 11.1 78 68-150 14-92 (94)
52 COG0824 FcbC Predicted thioest 97.6 0.0014 3.1E-08 46.1 10.1 58 92-154 57-114 (137)
53 TIGR02799 thio_ybgC tol-pal sy 97.5 0.0021 4.6E-08 43.8 9.6 56 92-152 53-108 (126)
54 COG1607 Acyl-CoA hydrolase [Li 97.5 0.004 8.8E-08 44.9 11.1 83 71-155 30-121 (157)
55 PF13622 4HBT_3: Thioesterase- 97.4 0.0057 1.2E-07 46.9 12.7 81 69-155 9-91 (255)
56 COG5496 Predicted thioesterase 97.3 0.029 6.3E-07 38.8 13.8 106 26-152 2-113 (130)
57 TIGR00051 acyl-CoA thioester h 97.3 0.0058 1.2E-07 40.9 9.8 54 91-148 48-101 (117)
58 PF12119 DUF3581: Protein of u 97.3 0.0015 3.3E-08 48.7 7.2 91 33-148 12-103 (218)
59 PRK10694 acyl-CoA esterase; Pr 97.2 0.013 2.8E-07 41.1 11.6 79 71-153 28-120 (133)
60 TIGR02447 yiiD_Cterm thioester 97.2 0.0041 8.9E-08 43.8 8.7 80 70-152 38-136 (138)
61 PF13279 4HBT_2: Thioesterase- 97.2 0.011 2.3E-07 40.1 10.4 58 92-153 44-104 (121)
62 TIGR00189 tesB acyl-CoA thioes 96.9 0.012 2.7E-07 45.7 10.1 77 71-152 22-99 (271)
63 KOG3328 HGG motif-containing t 96.8 0.026 5.7E-07 40.1 9.7 80 71-154 55-141 (148)
64 PRK07531 bifunctional 3-hydrox 96.7 0.018 3.8E-07 48.9 9.8 59 91-153 395-453 (495)
65 PRK10526 acyl-CoA thioesterase 96.7 0.04 8.7E-07 43.5 11.1 81 69-154 31-112 (286)
66 PF14539 DUF4442: Domain of un 96.1 0.083 1.8E-06 36.8 8.8 78 71-151 47-131 (132)
67 PLN02647 acyl-CoA thioesterase 95.8 0.16 3.4E-06 42.6 10.5 84 71-154 307-402 (437)
68 PLN02370 acyl-ACP thioesterase 95.1 0.26 5.5E-06 41.1 9.5 58 91-152 196-254 (419)
69 PLN02868 acyl-CoA thioesterase 94.3 0.48 1E-05 39.3 9.5 79 70-153 158-237 (413)
70 PF01643 Acyl-ACP_TE: Acyl-ACP 94.3 0.82 1.8E-05 35.5 10.3 57 92-152 61-118 (261)
71 PF03756 AfsA: A-factor biosyn 93.9 1.4 3.1E-05 30.3 11.8 92 50-150 29-130 (132)
72 COG1946 TesB Acyl-CoA thioeste 93.4 0.53 1.1E-05 37.2 7.6 84 69-157 31-115 (289)
73 PLN02647 acyl-CoA thioesterase 93.3 2 4.4E-05 36.1 11.4 83 71-155 110-211 (437)
74 PF14765 PS-DH: Polyketide syn 93.0 2.8 6.1E-05 32.4 11.3 86 67-152 36-126 (295)
75 PF09500 YiiD_Cterm: Putative 92.1 0.49 1.1E-05 33.7 5.4 58 92-152 76-142 (144)
76 COG3777 Uncharacterized conser 91.5 0.12 2.6E-06 39.8 1.8 116 33-156 16-145 (273)
77 cd03444 Thioesterase_II_repeat 90.2 3 6.5E-05 27.6 7.6 53 95-151 51-103 (104)
78 KOG4781 Uncharacterized conser 89.3 1 2.2E-05 34.4 5.2 73 65-142 138-216 (237)
79 PF02551 Acyl_CoA_thio: Acyl-C 89.3 4.5 9.6E-05 28.3 8.0 51 95-149 78-129 (131)
80 KOG3016 Acyl-CoA thioesterase 87.5 8.3 0.00018 30.6 9.3 81 67-152 35-116 (294)
81 COG1946 TesB Acyl-CoA thioeste 85.0 3.8 8.2E-05 32.5 6.3 54 96-153 230-283 (289)
82 PF01643 Acyl-ACP_TE: Acyl-ACP 84.6 9.6 0.00021 29.5 8.5 55 92-149 204-258 (261)
83 PRK10526 acyl-CoA thioesterase 83.7 7.1 0.00015 30.8 7.5 57 95-155 229-285 (286)
84 PF13622 4HBT_3: Thioesterase- 82.5 16 0.00034 27.7 8.9 55 94-152 200-255 (255)
85 PF14765 PS-DH: Polyketide syn 82.4 20 0.00044 27.5 10.0 54 94-151 232-286 (295)
86 TIGR00189 tesB acyl-CoA thioes 80.6 10 0.00022 29.2 7.3 54 95-152 217-270 (271)
87 COG3884 FatA Acyl-ACP thioeste 75.2 36 0.00078 26.3 8.7 57 91-152 55-111 (250)
88 PF10648 Gmad2: Immunoglobulin 74.3 21 0.00045 23.1 6.4 48 99-150 3-50 (88)
89 PF10862 FcoT: FcoT-like thioe 73.0 32 0.0007 24.8 8.2 59 91-151 95-156 (157)
90 KOG2763 Acyl-CoA thioesterase 68.7 13 0.00028 30.5 5.1 53 71-123 216-274 (357)
91 PF01835 A2M_N: MG2 domain; I 67.4 30 0.00065 22.2 6.2 47 102-148 7-55 (99)
92 COG4109 Predicted transcriptio 67.4 30 0.00065 28.6 6.9 53 92-149 375-427 (432)
93 PLN02868 acyl-CoA thioesterase 65.3 21 0.00045 29.6 5.9 52 96-151 361-412 (413)
94 KOG3016 Acyl-CoA thioesterase 54.6 52 0.0011 26.3 6.1 47 96-146 244-291 (294)
95 smart00737 ML Domain involved 51.3 70 0.0015 21.2 5.8 40 102-144 71-112 (118)
96 cd03420 SirA_RHOD_Pry_redox Si 50.4 6.5 0.00014 24.0 0.4 28 24-51 22-51 (69)
97 PF12119 DUF3581: Protein of u 48.2 1.2E+02 0.0026 23.1 8.5 58 93-153 152-209 (218)
98 PF11355 DUF3157: Protein of u 47.5 1.1E+02 0.0024 23.0 6.5 55 95-150 98-152 (199)
99 COG3884 FatA Acyl-ACP thioeste 46.7 54 0.0012 25.4 4.9 26 95-120 194-219 (250)
100 TIGR02813 omega_3_PfaA polyket 45.6 74 0.0016 33.1 6.9 47 95-145 2519-2565(2582)
101 PF11454 DUF3016: Protein of u 43.2 37 0.00081 24.1 3.4 24 127-150 86-109 (141)
102 PF02221 E1_DerP2_DerF2: ML do 43.1 1E+02 0.0022 20.7 7.3 41 103-144 86-126 (134)
103 PRK00299 sulfur transfer prote 41.7 11 0.00023 23.9 0.4 28 24-51 32-61 (81)
104 PLN02370 acyl-ACP thioesterase 41.6 2.1E+02 0.0047 24.1 9.2 62 91-152 339-402 (419)
105 PHA01790 streptodornase 41.5 73 0.0016 25.5 5.0 40 99-140 234-275 (326)
106 cd03422 YedF YedF is a bacteri 41.0 12 0.00027 22.7 0.6 28 24-51 22-51 (69)
107 cd03423 SirA SirA (also known 38.3 13 0.00028 22.6 0.4 28 24-51 22-51 (69)
108 cd04316 ND_PkAspRS_like_N ND_P 37.8 68 0.0015 21.1 3.9 23 103-125 7-29 (108)
109 PF11614 FixG_C: IG-like fold 36.5 1.3E+02 0.0028 20.0 6.2 49 105-153 70-118 (118)
110 cd00915 MD-1_MD-2 MD-1 and MD- 36.3 1.5E+02 0.0032 20.7 5.6 45 103-149 83-129 (130)
111 KOG4680 Uncharacterized conser 35.3 1.6E+02 0.0036 20.9 6.7 50 102-153 96-145 (153)
112 PF10989 DUF2808: Protein of u 35.0 1.6E+02 0.0035 20.6 6.3 44 95-140 89-132 (146)
113 cd00916 Npc2_like Niemann-Pick 34.6 1.5E+02 0.0032 20.1 5.9 40 102-142 76-115 (123)
114 PF14230 DUF4333: Domain of un 31.1 1.3E+02 0.0029 18.8 4.3 37 97-140 44-80 (80)
115 cd00918 Der-p2_like Several gr 30.5 1.8E+02 0.0038 19.8 5.8 39 102-141 72-110 (120)
116 cd04317 EcAspRS_like_N EcAspRS 30.2 84 0.0018 21.5 3.5 24 102-125 8-31 (135)
117 PF11141 DUF2914: Protein of u 29.9 1.2E+02 0.0027 18.2 3.8 21 130-150 45-65 (66)
118 PF01206 TusA: Sulfurtransfera 27.5 10 0.00023 22.8 -1.3 28 24-51 23-52 (70)
119 KOG3287 Membrane trafficking p 27.4 1.5E+02 0.0032 22.8 4.5 45 96-145 43-87 (236)
120 cd00912 ML The ML (MD-2-relate 26.8 2E+02 0.0044 19.3 5.6 41 102-143 79-120 (127)
121 PRK10334 mechanosensitive chan 26.8 2.1E+02 0.0046 22.6 5.6 20 96-115 121-140 (286)
122 PHA00098 hypothetical protein 23.9 75 0.0016 21.2 2.1 29 36-64 30-63 (112)
123 PRK11281 hypothetical protein; 23.4 1.9E+02 0.0041 27.7 5.4 21 95-115 929-949 (1113)
124 PF14524 Wzt_C: Wzt C-terminal 22.4 2.4E+02 0.0053 18.6 6.2 39 104-145 30-68 (142)
125 PRK10929 putative mechanosensi 21.0 2.3E+02 0.005 27.1 5.4 21 95-115 926-946 (1109)
126 COG0425 SirA Predicted redox p 20.3 1.1E+02 0.0025 19.1 2.4 27 24-50 28-56 (78)
127 COG1370 Prefoldin, molecular c 20.1 1.5E+02 0.0032 21.3 3.2 19 133-151 117-135 (155)
No 1
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=100.00 E-value=4.4e-34 Score=203.42 Aligned_cols=132 Identities=23% Similarity=0.370 Sum_probs=120.1
Q ss_pred cccCCcEEe-eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCCCee---EEEEEE
Q 031503 24 ILKTGDILR-QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPGAV---YVSQSL 99 (158)
Q Consensus 24 dl~vG~~~~-~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~g~~---~~~~~~ 99 (158)
|+++|++++ ..+++|++++..||.++||+||+|+|++||++++|+++|+||+++++++.+++..+.++.. ++.+++
T Consensus 4 d~~vG~~~~~~~~tvt~~~i~~Fa~~tgD~nPiH~D~e~A~~~~fg~~ia~G~l~~s~~~~l~~~~~~~~~~~~~g~~~~ 83 (142)
T cd03452 4 QLRPGDSLLTHRRTVTEADIVNFACLTGDHFYAHMDEIAAKASFFGKRVAHGYFVLSAAAGLFVDPAPGPVLANYGLENL 83 (142)
T ss_pred ccCCCCEEeeCCEEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCeeecHHHHHHHHhhhCccCCcccEEEEeccceE
Confidence 799999997 7889999999999999999999999999999999999999999999999998876666543 456899
Q ss_pred EEcCCcccCCEEEEEEEEEEEEecC--CeeEEEEEEEEEecCCcEEEEEEEEEEeecC
Q 031503 100 HFRLPVYIGDEVLGQLQAVNVREMK--KRYLVKFSTKCIKNGELLVLDGEAMAFLPSL 155 (158)
Q Consensus 100 rf~~Pv~~Gd~l~~~~~v~~~~~~~--~~~~v~~~~~~~n~~g~~v~~g~~~~~~~~~ 155 (158)
+|++||++||+|+++.+|.++++++ +.+.+++++++.||+|++|++++.+++++++
T Consensus 84 rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~~~~~ 141 (142)
T cd03452 84 RFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQNGELVASYDILTLVAKK 141 (142)
T ss_pred EECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEecCCCEEEEEEehHeeEec
Confidence 9999999999999999999998654 2478999999999999999999999998875
No 2
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=100.00 E-value=2.1e-32 Score=191.20 Aligned_cols=124 Identities=23% Similarity=0.324 Sum_probs=114.8
Q ss_pred CCcEEe-eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCC-CeeEEEEEEEEcCC
Q 031503 27 TGDILR-QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFP-GAVYVSQSLHFRLP 104 (158)
Q Consensus 27 vG~~~~-~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~-g~~~~~~~~rf~~P 104 (158)
+|++++ ..+++|++++..|+.++||+||+|+|++||+++||+++|+||+++++++..++..+++ +..+..+++||++|
T Consensus 1 vG~~~~~~~~~vt~~~i~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~rf~~P 80 (127)
T cd03453 1 VGDELPPLTPPVSRADLVRYAGASGDFNPIHYDEDFAKKVGLPGVIAHGMLTMGLLGRLVTDWVGDPGRVVSFGVRFTKP 80 (127)
T ss_pred CCccCCceeeecCHHHHHHHHHhhcCCCccccCHHHHHHcCCCCcEecHHHHHHHHHHHHHHHcCCccceEEEEEEECCc
Confidence 689998 7789999999999999999999999999999999999999999999999999888886 44456788999999
Q ss_pred cccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEE
Q 031503 105 VYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMA 150 (158)
Q Consensus 105 v~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~ 150 (158)
|++||+|+++++|++++++++++.++++++++||+|++|++|++++
T Consensus 81 v~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq~g~~v~~g~a~v 126 (127)
T cd03453 81 VPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQAGGKKVLGRAIV 126 (127)
T ss_pred CcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEcCCCEEEEEEEEE
Confidence 9999999999999999887666789999999999999999999886
No 3
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=100.00 E-value=5.1e-32 Score=192.93 Aligned_cols=133 Identities=23% Similarity=0.333 Sum_probs=119.1
Q ss_pred cccCCcEEe--eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCCC---eeEEEEE
Q 031503 24 ILKTGDILR--QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPG---AVYVSQS 98 (158)
Q Consensus 24 dl~vG~~~~--~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~g---~~~~~~~ 98 (158)
|+++|++++ ..+++|++++..||.++||+||+|+|++||++++|+++|+||+++++++.++...++++ ..++..+
T Consensus 6 ~~~vG~~~~~~~~~tvt~~~i~~fa~~~gd~~piH~D~~~a~~~~~~~~ia~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (146)
T cd03451 6 DFTVGQVFEHAPGRTVTEADNVLFTLLTMNTAPLHFDAAYAAKTEFGRRLVNSLFTLSLALGLSVNDTSLTAVANLGYDE 85 (146)
T ss_pred cCCCccEEecCCCeEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCccccHHhHHHHHhhheehhccccceeccCccE
Confidence 799999997 47899999999999999999999999999999999999999999999988766555543 3355679
Q ss_pred EEEcCCcccCCEEEEEEEEEEEEecC---CeeEEEEEEEEEecCCcEEEEEEEEEEeecCC
Q 031503 99 LHFRLPVYIGDEVLGQLQAVNVREMK---KRYLVKFSTKCIKNGELLVLDGEAMAFLPSLA 156 (158)
Q Consensus 99 ~rf~~Pv~~Gd~l~~~~~v~~~~~~~---~~~~v~~~~~~~n~~g~~v~~g~~~~~~~~~~ 156 (158)
++|++||++||+|+++++|+++++++ +.++++++++++||+|++|++++++++++++.
T Consensus 86 ~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~~~~~~ 146 (146)
T cd03451 86 VRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQDGEPVLSFERTALVPKRG 146 (146)
T ss_pred EEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECCCCCEEEEEEehhEEEcCC
Confidence 99999999999999999999998653 25799999999999999999999999999863
No 4
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=100.00 E-value=6.8e-32 Score=191.04 Aligned_cols=129 Identities=26% Similarity=0.420 Sum_probs=114.7
Q ss_pred cccCCcEEe-eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCC--C---eeEEEE
Q 031503 24 ILKTGDILR-QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFP--G---AVYVSQ 97 (158)
Q Consensus 24 dl~vG~~~~-~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~--g---~~~~~~ 97 (158)
|+++|+++. ..+++|++++..||.++||+||+|+|++||+++||+++++||+++++++.+++..+.. + ..++.+
T Consensus 4 d~~vG~~~~~~~~tvt~~~i~~fa~~~gD~np~H~D~~~A~~~~~~~~ia~G~~~~a~~~~~~~~~~~~~~~~~~~~g~~ 83 (140)
T cd03446 4 DFEIGQVFESVGRTVTEADVVMFAGLSGDWNPIHTDAEYAKKTRFGERIAHGLLTLSIATGLLQRLGVFERTVVAFYGID 83 (140)
T ss_pred cccCCCEeccCCEEECHHHHHHHHHhhCCCcccccCHHHHccCCCCCceeccccHHHHHhhHhhhcccccceeeEEeccc
Confidence 799999997 7889999999999999999999999999999999999999999999998887654321 1 345567
Q ss_pred EEEEcCCcccCCEEEEEEEEEEEEecC--CeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 98 SLHFRLPVYIGDEVLGQLQAVNVREMK--KRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 98 ~~rf~~Pv~~Gd~l~~~~~v~~~~~~~--~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
+++|++||++||+|+++.+|.++++++ +++.++++++++||+|++|+++++++++
T Consensus 84 ~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~~l~ 140 (140)
T cd03446 84 NLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRGEVVQSGEMSLLV 140 (140)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCEEEEEEEeeeC
Confidence 999999999999999999999987653 3578999999999999999999998864
No 5
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=99.97 E-value=2.4e-30 Score=179.94 Aligned_cols=126 Identities=37% Similarity=0.656 Sum_probs=115.6
Q ss_pred ccCCcEEeeeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCC--CeeEEEEEEEEc
Q 031503 25 LKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFP--GAVYVSQSLHFR 102 (158)
Q Consensus 25 l~vG~~~~~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~--g~~~~~~~~rf~ 102 (158)
+++|+.+...+++|++++.+|+.++||.||+|+|++||+.+||+++|+||+++++++..++..+++ +.++...+++|+
T Consensus 1 ~~~G~~~~~~~tv~~~~~~~fa~~~gd~npiH~D~~~A~~~g~~~~i~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~ 80 (128)
T cd03449 1 LKVGDSASLTRTITEEDVELFAELSGDFNPIHLDEEYAKKTRFGGRIAHGMLTASLISAVLGTLLPGPGTIYLSQSLRFL 80 (128)
T ss_pred CCCCCEEEEEEEEcHHHHHHHHHHhCCCCCccCCHHHHhhCCCCCceecHHHHHHHHHHHHhccCCCceEEEEEEEEEEC
Confidence 579999998889999999999999999999999999999999999999999999999988888775 456778999999
Q ss_pred CCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 103 LPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 103 ~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
+|+++||+|++++++.+++.+ ++.++++++++||+|++|++|++++++
T Consensus 81 ~Pv~~gd~l~~~~~v~~~~~~--~~~v~~~~~~~~~~g~~v~~g~~~~~~ 128 (128)
T cd03449 81 RPVFIGDTVTATVTVTEKRED--KKRVTLETVCTNQNGEVVIEGEAVVLA 128 (128)
T ss_pred CCccCCCEEEEEEEEEEEecC--CCEEEEEEEEEeCCCCEEEEEEEEEeC
Confidence 999999999999999998753 358899999999999999999999874
No 6
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=99.97 E-value=7.5e-31 Score=182.37 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=110.8
Q ss_pred CcEEe-eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCC-CeeEEEEEEEEcCCc
Q 031503 28 GDILR-QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFP-GAVYVSQSLHFRLPV 105 (158)
Q Consensus 28 G~~~~-~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~-g~~~~~~~~rf~~Pv 105 (158)
|+.++ ..+++|++++.+||.+++|+||+|+|++||+++||+++|+||+++++++..++..+++ +..+..++++|++||
T Consensus 1 g~~~~~~~~~vt~~~i~~fa~~s~D~~piH~D~~~A~~~g~~~~ia~G~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~pv 80 (123)
T cd03455 1 GDELPRLSIPPDPTLLFRYSAATRDFHRIHHDRDYARAVGYPDLYVNGPTLAGLVIRYVTDWAGPDARVKSFAFRLGAPL 80 (123)
T ss_pred CCcCCcEEecCCHHHHHHHHhhcCCCCcccCCHHHHHhcCCCceEEEHHHHHHHHHHHHHHccCCcceEEEEEEEeeccc
Confidence 66777 7789999999999999999999999999999999999999999999999999888876 567788899999999
Q ss_pred ccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEE
Q 031503 106 YIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAF 151 (158)
Q Consensus 106 ~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~ 151 (158)
++||+|+++++|.++++. . +++++++++||+|++|++|++++.
T Consensus 81 ~~Gdtl~~~~~v~~~~~~--~-~v~~~~~~~nq~G~~v~~g~a~v~ 123 (123)
T cd03455 81 YAGDTLRFGGRVTAKRDD--E-VVTVELWARNSEGDHVMAGTATVA 123 (123)
T ss_pred cCCCEEEEEEEEEeeccC--c-EEEEEEEEEcCCCCEEEeEEEEEC
Confidence 999999999999998643 3 889999999999999999999873
No 7
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.97 E-value=5.6e-30 Score=181.48 Aligned_cols=129 Identities=19% Similarity=0.337 Sum_probs=114.1
Q ss_pred CcccCCcEEe-eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhc-cCCC----eeEEE
Q 031503 23 RILKTGDILR-QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISS-HFPG----AVYVS 96 (158)
Q Consensus 23 ~dl~vG~~~~-~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~-~~~g----~~~~~ 96 (158)
+|+++|+++. ..+++|++++..||.+ +|+||+|+|++||+++||+++|+||+++++++.+++.. +..+ ..++.
T Consensus 2 ed~~vG~~~~~~~~~vt~~~v~~Fa~~-~D~npih~D~e~A~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (140)
T cd03454 2 EDLVIGQRFTSGSYTVTEEEIIAFARE-FDPQPFHLDEEAAKESLFGGLAASGWHTAAITMRLLVDAGLSGSASGGSPGI 80 (140)
T ss_pred CcCCCccEEEeCCEEEcHHHHHHHHHc-cCCCccCcCHHHHhcCCCCCeeechHHHHHHHHHhhhhhccccceEEEEcce
Confidence 4799999999 5789999999999998 99999999999999999999999999999998887653 2222 34556
Q ss_pred EEEEEcCCcccCCEEEEEEEEEEEEecC---CeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 97 QSLHFRLPVYIGDEVLGQLQAVNVREMK---KRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 97 ~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~---~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
++++|++||++||+|+++.+|.++++++ ++++++++++++||+|++|+++++++++
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~~~~ 139 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQRGEVVLTFEATVLV 139 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcCCCCEEEEEEehhee
Confidence 7999999999999999999999998642 3678999999999999999999998875
No 8
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=99.97 E-value=6.8e-30 Score=181.84 Aligned_cols=134 Identities=28% Similarity=0.362 Sum_probs=112.6
Q ss_pred cccccccccCCCcccCCcEEe-eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCC
Q 031503 12 PLLRYFSSLEPRILKTGDILR-QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFP 90 (158)
Q Consensus 12 ~~~~~~~~~~~~dl~vG~~~~-~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~ 90 (158)
|.+++|+| +++||+++ ..+++|++++..||.++||+||+|+|++||+.+||+++|+||+++++++.+++..|++
T Consensus 1 ~~~~~~ed-----~~vG~~~~~~~~tvt~~di~~FA~~sgD~nPiH~D~~~A~~~g~~~~iahG~~~~a~~~~~~~~~~~ 75 (142)
T PRK13693 1 MALREFSS-----VKVGDQLPEKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGLGGGYVTSWVG 75 (142)
T ss_pred CCcccHhH-----cCCCCCcCccceeeCHHHHHHHHHHhCCCCccccCHHHHHhcCCCCcEecHHHHHHHHHHHHHHhcC
Confidence 44566655 99999997 7789999999999999999999999999999999999999999999999999888875
Q ss_pred C-eeEEEEEEEEcCCcccC-C----EEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 91 G-AVYVSQSLHFRLPVYIG-D----EVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 91 g-~~~~~~~~rf~~Pv~~G-d----~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
+ ......++||.+||++| | +|+++++|+++++. ++.+++++++.|++++.+.+|++.+.+
T Consensus 76 ~~~~~~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~ 141 (142)
T PRK13693 76 DPGAVTEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPE--SKSVTIALTATTGGKKIFGRAIASAKL 141 (142)
T ss_pred CCcceEEEEEEecccEECCCCccceEEEEEEEEEEeccC--CcEEEEEEEEEECCcEEEEEEEEEEEc
Confidence 2 22356899999999964 4 99999999998643 468899999987777756666666543
No 9
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=99.97 E-value=1.4e-29 Score=183.38 Aligned_cols=132 Identities=26% Similarity=0.460 Sum_probs=122.2
Q ss_pred cccCCcEEe--eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhh-CCCCCceechhhHHHHHHHHhhccCC----CeeEEE
Q 031503 24 ILKTGDILR--QTRIFSSEDVVEYSKVSHDSNPLHFNSESARN-AGFDDRLVHGMLVASMFPQIISSHFP----GAVYVS 96 (158)
Q Consensus 24 dl~vG~~~~--~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~-~g~~~~i~~G~~~~a~~~~~~~~~~~----g~~~~~ 96 (158)
++++|+.+. .+++++++|+..|+.++||+||+|+|+++|+. ++|+++|+||+++++++.+++..+++ +..++.
T Consensus 19 ~~~vG~~~~~~~~~~~t~~d~~~fa~~tgD~qpiH~D~e~A~~~~~fg~~iahG~~t~a~~~~~~~~~~~~~~~~~~~g~ 98 (159)
T COG2030 19 DFEVGQVFPHSPWRTVTEADIVLFAAVTGDPNPIHLDPEAAKKTSGFGGPIAHGMLTLALAMGLVVAALGDPSVGANLGG 98 (159)
T ss_pred hccCCcEEecCCceEecHHHHHHHHHhcCCCCceecCHHHHhccCCCCCEehhHHHHHHHHHHHHHHhccCcceeeeccc
Confidence 699999888 67799999999999999999999999999999 59999999999999999998877664 457899
Q ss_pred EEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEeecC
Q 031503 97 QSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLPSL 155 (158)
Q Consensus 97 ~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~~~ 155 (158)
.++||++||++||+|++..++.++++++++++++++.+++||+|+.+..+..+.+.+.+
T Consensus 99 ~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~~~g~~v~~~~~~~~~~~~ 157 (159)
T COG2030 99 DEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVNQEGELVLTLEATVLVLRR 157 (159)
T ss_pred cceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEccCCcEEEEEEEeEeEeec
Confidence 99999999999999999999999998876689999999999999999999999998765
No 10
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=99.97 E-value=1.8e-29 Score=209.83 Aligned_cols=131 Identities=26% Similarity=0.520 Sum_probs=121.4
Q ss_pred cccCCcEEeeeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCC--CeeEEEEEEEE
Q 031503 24 ILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFP--GAVYVSQSLHF 101 (158)
Q Consensus 24 dl~vG~~~~~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~--g~~~~~~~~rf 101 (158)
|+++|+++...+++|++++..|+.++||+||+|+|++||+.+||+++|+||+++++++.+++..+++ +..+..++++|
T Consensus 13 dl~vG~~~~~~rtvT~~di~~FA~lsGD~nPiH~D~e~Ak~sgfg~~IahG~l~~s~~~~l~~~~~~g~~~~~~~~~~rF 92 (466)
T PRK08190 13 EIAIGDSASLVRTLTPDDIELFAAMSGDVNPAHLDAAYAASDGFHHVVAHGMWGGALISAVLGTRLPGPGTIYLGQSLRF 92 (466)
T ss_pred hcCCCCEEeeeEEecHHHHHHHHHHhCCCCCCCcCHHHHHhCCCCCceeCHHHHHHHHHHHHhhhCCCcceEEEEEEEEE
Confidence 6999999998899999999999999999999999999999999999999999999999988877776 45678899999
Q ss_pred cCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEeecCC
Q 031503 102 RLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLPSLA 156 (158)
Q Consensus 102 ~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~~~~ 156 (158)
++||++||+|+++.+|++++. +++.++++++++||+|++|++|++++++|++.
T Consensus 93 ~~PV~~GDtl~~~~~V~~~~~--~~~~v~~~~~~~nq~G~~V~~g~~~~l~~~~~ 145 (466)
T PRK08190 93 RRPVRIGDTLTVTVTVREKDP--EKRIVVLDCRCTNQDGEVVITGTAEVIAPTEK 145 (466)
T ss_pred eCCcCCCCEEEEEEEEEEEEC--CCCEEEEEEEEEeCCCCEEEEEEEEeeccccc
Confidence 999999999999999999864 35689999999999999999999999998764
No 11
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=99.97 E-value=6.2e-29 Score=173.63 Aligned_cols=116 Identities=24% Similarity=0.261 Sum_probs=103.9
Q ss_pred eEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCC---CeeEEEEEEEEcCCcccCCE
Q 031503 34 TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFP---GAVYVSQSLHFRLPVYIGDE 110 (158)
Q Consensus 34 ~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~---g~~~~~~~~rf~~Pv~~Gd~ 110 (158)
...+|++|+..||.++||+||+|+|++||+++||+++|+||+++++++..++..+++ +..+...++||++||++||+
T Consensus 7 ~~~~t~~d~~~fa~lsGD~nPiH~D~~~A~~~g~~~~iahG~l~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~PV~~gdt 86 (126)
T cd03447 7 LTITAPASNEPYARVSGDFNPIHVSRVFASYAGLPGTITHGMYTSAAVRALVETWAADNDRSRVRSFTASFVGMVLPNDE 86 (126)
T ss_pred EEEEChHHHHHHHHHhCCCCccCCCHHHHHHcCCCCCeechhHHHHHHHHHHHHhccCCCcceEEEEEEEEcccCcCCCE
Confidence 467899999999999999999999999999999999999999999999998877764 24456789999999999999
Q ss_pred EEEEEEEEEEEecCCeeEEEEEEEEEecC-CcEEEEEEEEEEee
Q 031503 111 VLGQLQAVNVREMKKRYLVKFSTKCIKNG-ELLVLDGEAMAFLP 153 (158)
Q Consensus 111 l~~~~~v~~~~~~~~~~~v~~~~~~~n~~-g~~v~~g~~~~~~~ 153 (158)
|+++.++++++. +.++++++++||+ |++|++|++++..|
T Consensus 87 l~~~~~v~~~~~----~~~~~~~~~~nq~~g~~V~~g~~~v~~p 126 (126)
T cd03447 87 LEVRLEHVGMVD----GRKVIKVEARNEETGELVLRGEAEVEQP 126 (126)
T ss_pred EEEEEEEEEEeC----CeEEEEEEEEECCCCCEEEEEEEEEeCC
Confidence 999999998753 3567888999999 99999999999876
No 12
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=99.96 E-value=2e-28 Score=178.27 Aligned_cols=132 Identities=19% Similarity=0.313 Sum_probs=112.0
Q ss_pred cccCCcEEe--eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhh-ccC----C--C---
Q 031503 24 ILKTGDILR--QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIIS-SHF----P--G--- 91 (158)
Q Consensus 24 dl~vG~~~~--~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~-~~~----~--g--- 91 (158)
.=.+|+.++ ..+++|+++++.||.++||+||+|+|++||+++||+++|+||++. +++...+. ..+ . +
T Consensus 5 ~~~~g~~~~~~~~~~Vt~~~I~~FA~~~GD~nPlH~D~eyA~~s~fg~~IApgt~~-~~~~~~~~~~~~~~~~~g~~~~~ 83 (166)
T PRK13691 5 TDIRGMVWRYPDYFVVGREQIRQFARAVKCDHPAFFSEDAAAELGYDALVAPLTFV-TIFAKYVQLDFFRHVDVGMETMQ 83 (166)
T ss_pred hhhCccCcCCCCCeEECHHHHHHHHHHHCCCCCcccCHHHHHhCCCCCcccCHHHH-HHHHHHhccccccccccCCCcce
Confidence 346899998 467999999999999999999999999999999999999999886 33333332 211 1 1
Q ss_pred eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEeecCC
Q 031503 92 AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLPSLA 156 (158)
Q Consensus 92 ~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~~~~ 156 (158)
..+++++++|++||++||+|+++.+|.+++++.++++++++.+++||+|++|++++.+++.+.++
T Consensus 84 ~v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ~Ge~V~~~~~~~~~~~~~ 148 (166)
T PRK13691 84 IVQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTNDDGELVMEAYTTLMGQQGD 148 (166)
T ss_pred eeeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECCCCCEEEEEEEEEEEecCC
Confidence 24568999999999999999999999999875556899999999999999999999999998764
No 13
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=99.96 E-value=3.6e-28 Score=175.92 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=112.4
Q ss_pred CcccCCcEEe-e-eEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhc-------cCC--C
Q 031503 23 RILKTGDILR-Q-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISS-------HFP--G 91 (158)
Q Consensus 23 ~dl~vG~~~~-~-~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~-------~~~--g 91 (158)
+...+|+.+. . .+++|++++..||.++||.||+|+|++||++++|+++|+|+.+...+-...... .++ +
T Consensus 4 ~~~~vG~~~~~~~~~tvt~~dI~~FA~~~GD~nPlh~D~e~A~~~~fg~~iA~~~~~~~~gl~~~~~~~~~~~l~~~~~~ 83 (159)
T PRK13692 4 SADIVGMHYRYPDHYEVEREKIREYAVAVQNDDAAYFEEDAAAELGYKGLLAPLTFICVFGYKAQSAFFKHANIAVADAQ 83 (159)
T ss_pred ChhHceeEcCCCCceEeCHHHHHHHHHHHCCCCCCccCHHHHHhcCCCCcccChHHHHHhhhhhhhhhhhcccCCCCccc
Confidence 3578999999 3 689999999999999999999999999999999999999988864322111111 121 3
Q ss_pred eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEeecC
Q 031503 92 AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLPSL 155 (158)
Q Consensus 92 ~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~~~ 155 (158)
.++..++++|++||++||+|+++.+|.++++++++++++++++++||+|++|++++.+++....
T Consensus 84 ~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq~Ge~V~~~~~~~~~r~~ 147 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNEEGDVVQETYTTLAGRAG 147 (159)
T ss_pred eEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcCCCCEEEEEEEEEEEecC
Confidence 4567799999999999999999999999887666789999999999999999999999998764
No 14
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=99.96 E-value=1.2e-27 Score=165.95 Aligned_cols=118 Identities=34% Similarity=0.559 Sum_probs=109.4
Q ss_pred eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCC---CeeEEEEEEEEcCCcccCC
Q 031503 33 QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFP---GAVYVSQSLHFRLPVYIGD 109 (158)
Q Consensus 33 ~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~---g~~~~~~~~rf~~Pv~~Gd 109 (158)
..++++++++..|+.++||+||+|+|++||+..||+++|+||+++++++.+++..+++ +..+...+++|++||++||
T Consensus 6 ~~~~~~~~~~~~fa~~~gd~npiH~d~~~A~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Pv~~Gd 85 (127)
T cd03441 6 SGRTVTEADIALFARLSGDPNPIHVDPEYAKAAGFGGRIAHGMLTLSLASGLLVQWLPGTDGANLGSQSVRFLAPVFPGD 85 (127)
T ss_pred cceEcCHHHHHHHHHHhCCCCccccCHHHHHhCCCCCceechHHHHHHHHhhhhhhccCcccceeEEeEEEEeCCcCCCC
Confidence 5789999999999999999999999999999999999999999999999998888875 4678899999999999999
Q ss_pred EEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEE
Q 031503 110 EVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMA 150 (158)
Q Consensus 110 ~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~ 150 (158)
+|+++.++.+++.+++.+.++++++++||+|++++.|++++
T Consensus 86 ~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~ 126 (127)
T cd03441 86 TLRVEVEVLGKRPSKGRGVVTVRTEARNQGGEVVLSGEATV 126 (127)
T ss_pred EEEEEEEEEEeeccCCCcEEEEEEEEEeCCCCEEEEEEEEe
Confidence 99999999999876556789999999999999999998876
No 15
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=99.95 E-value=3e-27 Score=203.41 Aligned_cols=130 Identities=23% Similarity=0.342 Sum_probs=117.1
Q ss_pred cccCCcEEe-eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCCCee---EEEEEE
Q 031503 24 ILKTGDILR-QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPGAV---YVSQSL 99 (158)
Q Consensus 24 dl~vG~~~~-~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~g~~---~~~~~~ 99 (158)
|+++||++. ..+++|++++..|+.++||+||+|+|++||++++|+++|+||+++++++.+++..+.++.. ++.+++
T Consensus 527 d~~VG~~~~~~~~tvt~~dI~~FA~~sgD~nPiH~D~e~A~~s~fg~~Ia~G~l~~sl~~~l~~~~~~~~~~~~~g~~~~ 606 (663)
T TIGR02278 527 DLEIGDSLTTHRRTVTEADIALFAALSGDHFYAHMDEIAARESFFGKRVAHGYFVLSAAAGLFVDPAPGPVLANYGLENL 606 (663)
T ss_pred HcCCCCCcCCCCeEEcHHHHHHHHHhhCCCCcccCCHHHHhhCCCCCceeCHHHHHHHHHHHhhccCccchhhhcccceE
Confidence 599999997 7889999999999999999999999999999999999999999999999988766665533 566899
Q ss_pred EEcCCcccCCEEEEEEEEEEEEecCC--eeEEEEEEEEEecCCcEEEEEEEEEEee
Q 031503 100 HFRLPVYIGDEVLGQLQAVNVREMKK--RYLVKFSTKCIKNGELLVLDGEAMAFLP 153 (158)
Q Consensus 100 rf~~Pv~~Gd~l~~~~~v~~~~~~~~--~~~v~~~~~~~n~~g~~v~~g~~~~~~~ 153 (158)
||++||++||+|+++++|++++++++ .++++++++++||+|++|++++..+++.
T Consensus 607 rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq~G~~Vl~~~~~~lv~ 662 (663)
T TIGR02278 607 RFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQNGEPVATYDVLTLVA 662 (663)
T ss_pred EEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcCCCCEEEEEEEHHhcc
Confidence 99999999999999999999976432 4689999999999999999999988764
No 16
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=8.6e-27 Score=201.25 Aligned_cols=130 Identities=24% Similarity=0.350 Sum_probs=117.3
Q ss_pred cccCCcEEe-eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCCCee---EEEEEE
Q 031503 24 ILKTGDILR-QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPGAV---YVSQSL 99 (158)
Q Consensus 24 dl~vG~~~~-~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~g~~---~~~~~~ 99 (158)
|+++|++++ ..+++|++++..|+.++||+||+|+|++||+++||+++|+||+++++++.+++..+.++.. ++.+++
T Consensus 539 d~~vG~~~~~~~~tvt~~di~~FA~lsgD~nPiH~D~e~A~~~~fg~~ia~G~l~~sl~~~l~~~~~~~~~~~~~g~~~~ 618 (675)
T PRK11563 539 ELRIGDSLLTARRTVTEADIVNFACLSGDTFYAHMDEIAAAANFFGGRVAHGYFVLSAAAGLFVDPAPGPVLANYGLENL 618 (675)
T ss_pred HcCCCCEeccCCEEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCceeCHHHHHHHHHHHhhccCccchhhhcccceE
Confidence 599999997 7889999999999999999999999999999999999999999999999998766666432 455799
Q ss_pred EEcCCcccCCEEEEEEEEEEEEecC--CeeEEEEEEEEEecCCcEEEEEEEEEEee
Q 031503 100 HFRLPVYIGDEVLGQLQAVNVREMK--KRYLVKFSTKCIKNGELLVLDGEAMAFLP 153 (158)
Q Consensus 100 rf~~Pv~~Gd~l~~~~~v~~~~~~~--~~~~v~~~~~~~n~~g~~v~~g~~~~~~~ 153 (158)
||++||++||+|+++.+|.++++++ ++++++++++++||+|++|++++..+++.
T Consensus 619 rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~G~~V~~~~~~~lv~ 674 (675)
T PRK11563 619 RFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQDGELVATYDILTLVA 674 (675)
T ss_pred EEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEECCCCEEEEEEEHHhcc
Confidence 9999999999999999999998654 24789999999999999999999988765
No 17
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=99.95 E-value=4.3e-26 Score=163.44 Aligned_cols=127 Identities=22% Similarity=0.347 Sum_probs=106.9
Q ss_pred cCCcEEe--eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCC--C----eeEEEE
Q 031503 26 KTGDILR--QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFP--G----AVYVSQ 97 (158)
Q Consensus 26 ~vG~~~~--~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~--g----~~~~~~ 97 (158)
-+|++++ ..+++|++++++||.++||+||+|+|+++|+++||+++|+||+++++++.+++..+++ + ..++.+
T Consensus 11 ~vG~~~~~~~~~~vt~~di~~FA~~sgD~nPiH~D~e~A~~~gfg~~Ia~G~~t~sl~~~l~~~~~~~~~~~~~~~~g~~ 90 (149)
T cd03450 11 LVGQELGVSDWVTVDQERIDQFADATGDHQWIHVDPERAAAEPFGGTIAHGFLTLSLLPALTPQLFRVEGVKMGVNYGLD 90 (149)
T ss_pred hCCCCcCCCCCEEECHHHHHHHHHhhCCCCccccCHHHHhhCCCCCeEECHHHHHHHHHHHHHhcccCCCceEEEEeecc
Confidence 5899987 4579999999999999999999999999999999999999999999999998877653 3 235678
Q ss_pred EEEEcCCcccCCEEEEEEEEEEEEecCCe-eEEEEEEEEEec-CCcEEEEEEEEEEe
Q 031503 98 SLHFRLPVYIGDEVLGQLQAVNVREMKKR-YLVKFSTKCIKN-GELLVLDGEAMAFL 152 (158)
Q Consensus 98 ~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~-~~v~~~~~~~n~-~g~~v~~g~~~~~~ 152 (158)
+++|++||++||+|+++.+|.+++++++. .++.++.++.-. .++.++.+++..+.
T Consensus 91 ~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 147 (149)
T cd03450 91 KVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGEDKPACVAEWISRL 147 (149)
T ss_pred EEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCCCceEEEEEEEee
Confidence 99999999999999999999999988753 466666665332 35788888877653
No 18
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=99.94 E-value=1.4e-26 Score=160.77 Aligned_cols=100 Identities=29% Similarity=0.547 Sum_probs=85.7
Q ss_pred cCCcEEe--eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCCC---eeEEEEEEE
Q 031503 26 KTGDILR--QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPG---AVYVSQSLH 100 (158)
Q Consensus 26 ~vG~~~~--~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~g---~~~~~~~~r 100 (158)
.+|+.+. ..+++|++++.+|+.++||+||||+|++||+.+||+++|+||+++++++.+++..++++ ..+...++|
T Consensus 5 ~~g~~~~~~~~~tit~~~~~~fa~~sgD~nPiH~D~~~A~~~gf~~~ivhG~~~~a~~~~~~~~~~~~~~~~~~~~~~~r 84 (122)
T PF01575_consen 5 RIGQGIRHSRSRTITEADIRQFAALSGDFNPIHVDPEYARATGFGGPIVHGMLTLALASGLLGDWLGPNPPARLGRFNVR 84 (122)
T ss_dssp CTTSEEEEEEEEEEEHHHHHHHHHHHT---HHHH-HHHHHTSTTSSSB-BHHHHHHHHHHHHHHHHSTTECEEEEEEEEE
T ss_pred CCCCccccccCEEECHHHHHHHHHhhCCCCcceecHHHHhhcCCCCEEEccHHHHHHHHHHHHHhccCccceEEEEEEEE
Confidence 4788887 68999999999999999999999999999999999999999999999999999988764 678899999
Q ss_pred EcCCcccCCEEEEEEEEEEEEecCC
Q 031503 101 FRLPVYIGDEVLGQLQAVNVREMKK 125 (158)
Q Consensus 101 f~~Pv~~Gd~l~~~~~v~~~~~~~~ 125 (158)
|++||++||+|+++++++++++.+.
T Consensus 85 F~~PV~~gdtl~~~~~v~~~~~~~~ 109 (122)
T PF01575_consen 85 FRAPVFPGDTLTAEVEVTEKREGKE 109 (122)
T ss_dssp ESS--BTTEEEEEEEEEEEEEEEEE
T ss_pred EeccccCCCEEEEEEEEEEEEEcCc
Confidence 9999999999999999999887643
No 19
>PLN02864 enoyl-CoA hydratase
Probab=99.89 E-value=1.9e-22 Score=159.96 Aligned_cols=124 Identities=21% Similarity=0.196 Sum_probs=102.8
Q ss_pred cccCCcEEe-e-eEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhcc-CC--CeeEEEEE
Q 031503 24 ILKTGDILR-Q-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSH-FP--GAVYVSQS 98 (158)
Q Consensus 24 dl~vG~~~~-~-~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~-~~--g~~~~~~~ 98 (158)
..++|++.+ . ...++..+..+|+++|||+||+|+|++||+.+||+++|+||||+++++.+++..+ ++ +..+..++
T Consensus 180 ~~~~p~~~pd~~~~~~t~~~~~~~a~lSGD~NPiH~d~~~A~~~gf~~~IaHGm~t~g~~~~~~~~~~~~~~~~~~~~~~ 259 (310)
T PLN02864 180 AVKIPKSQPDAVFEDQTQPSQALLYRLSGDYNPLHSDPMFAKVAGFTRPILHGLCTLGFAVRAVIKCFCNGDPTAVKTIS 259 (310)
T ss_pred ccCCCCCCCCeEEeeccChhHHHHHHhhCCCCcccCCHHHHhhCCCCCceeccHHHHHHHHHHHHhhhcCCCCceEEEEE
Confidence 467888877 3 3478889999999999999999999999999999999999999999887765443 44 35567789
Q ss_pred EEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEeecC
Q 031503 99 LHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLPSL 155 (158)
Q Consensus 99 ~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~~~ 155 (158)
+||.+||++||+|+++.+.. .+.+.+++++ ||+|++|++|.+++..+..
T Consensus 260 ~rF~~PV~pGdtl~~~~~~~-------~~~v~~~~~~-~~~g~~vl~G~a~~~~~~~ 308 (310)
T PLN02864 260 GRFLLHVYPGETLVTEMWLE-------GLRVIYQTKV-KERNKAVLSGYVDLRHLTS 308 (310)
T ss_pred EEEcCCccCCCEEEEEEEeC-------CCEEEEEEEE-ecCCeEEEEEEEEEecccC
Confidence 99999999999998776532 2467788887 7899999999999876544
No 20
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=99.89 E-value=3.9e-22 Score=138.54 Aligned_cols=106 Identities=25% Similarity=0.402 Sum_probs=90.3
Q ss_pred eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccC-C--CeeEEEEEEEEcCCcccCC
Q 031503 33 QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHF-P--GAVYVSQSLHFRLPVYIGD 109 (158)
Q Consensus 33 ~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~-~--g~~~~~~~~rf~~Pv~~Gd 109 (158)
...++++.+...|+. |||+||+|+|++||+++||+++|+||+++++++.+++..++ + +..+...++||.+||++||
T Consensus 9 ~~~~~~~~~~~~~~~-SgD~nPiH~d~e~A~~~g~~~~iahG~~t~a~~~~~~~~~~~~~~~~~~~~~~~rF~~PV~~gD 87 (122)
T cd03448 9 VEIPTSPDQALLYRL-SGDYNPLHIDPAFAKAAGFPRPILHGLCTYGFAARAVLEAFADGDPARFKAIKVRFSSPVFPGE 87 (122)
T ss_pred EEecCCcChHHHHHH-hCCCCccccCHHHHHHcCCCCceehhHHHHHHHHHHHHHHhcCCCcceeEEEEEEEcCCccCCC
Confidence 567889999999986 99999999999999999999999999999999988876665 3 4567888999999999999
Q ss_pred EEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEE
Q 031503 110 EVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGE 147 (158)
Q Consensus 110 ~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~ 147 (158)
+|+++.++.+ +.+++++++. ++|++|+++.
T Consensus 88 tl~~~~~~~~-------~~v~~~~~~~-~~g~~v~~g~ 117 (122)
T cd03448 88 TLRTEMWKEG-------NRVIFQTKVV-ERDVVVLSNG 117 (122)
T ss_pred EEEEEEEEeC-------CEEEEEEEEc-cCCcEEEECC
Confidence 9999887432 2678888885 4778877654
No 21
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=99.86 E-value=6.1e-21 Score=133.73 Aligned_cols=120 Identities=20% Similarity=0.248 Sum_probs=93.5
Q ss_pred cCCcEEe-eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHH--hhccCC----CeeEEEEE
Q 031503 26 KTGDILR-QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQI--ISSHFP----GAVYVSQS 98 (158)
Q Consensus 26 ~vG~~~~-~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~--~~~~~~----g~~~~~~~ 98 (158)
.+|..+. ...++++++++.||.+.||.||+|+|+++|+..|+++.++|+.+...+.... +...++ +.++++++
T Consensus 2 ~iG~~~~~~~~~v~~~~i~~ya~avg~~~p~~~d~~~a~~~~~~~~~apPt~~~~~~~~~~~~~~~~~~~~~~~vh~~~~ 81 (132)
T PF13452_consen 2 WIGREFEPVTYTVTRRDIRRYALAVGDPNPLYLDEEYARAAGHGGLIAPPTFAVVLAWPAPAMFPDLGFDLTRLVHGEQD 81 (132)
T ss_dssp GTT-B-E-EEEEE-HHHHHHHHHHTT-CTTHHHHCTSS--TTSTT-B--GGGHHHHHHHCCGGCGCCSS-GGGEEEEEEE
T ss_pred CCccEeCCeeEEECHHHHHHHHHHhCcCCccccCHhHhhccCCCCcccCHHHHhhhhcccceeeecCCCChhhEEecCcE
Confidence 4788888 7899999999999999999999999999999999999999999988766543 222222 46788999
Q ss_pred EEEcCCcccCCEEEEEEEEEEEEecCC---eeEEEEEEEEEecCCcEEEE
Q 031503 99 LHFRLPVYIGDEVLGQLQAVNVREMKK---RYLVKFSTKCIKNGELLVLD 145 (158)
Q Consensus 99 ~rf~~Pv~~Gd~l~~~~~v~~~~~~~~---~~~v~~~~~~~n~~g~~v~~ 145 (158)
++|++|+++||+|+++.+|.+++++++ ..+++++.+++||+|++|++
T Consensus 82 ~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~~Ge~v~t 131 (132)
T PF13452_consen 82 IEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQDGELVAT 131 (132)
T ss_dssp EEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-CTTEEEEE
T ss_pred EEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCEEEe
Confidence 999999999999999999999999852 57889999999999999986
No 22
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=99.81 E-value=1.3e-20 Score=140.54 Aligned_cols=89 Identities=36% Similarity=0.586 Sum_probs=82.7
Q ss_pred eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCCCeeEEEEEEEEcCCcccCCEEE
Q 031503 33 QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPGAVYVSQSLHFRLPVYIGDEVL 112 (158)
Q Consensus 33 ~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~g~~~~~~~~rf~~Pv~~Gd~l~ 112 (158)
..+.+|.+|+.+|++++||+||+|.||+.|+.+||+.+|+||+++.++..+++...+|++.+..+++||..||+|||+|.
T Consensus 155 ~v~~~ts~DqaAlyrlsgD~NPLHiDPe~A~~agFetpilHGlc~lg~~~riv~a~~~~a~y~~~kvrF~spV~pGdtll 234 (272)
T KOG1206|consen 155 VVERFTSEDQAALYRLSGDHNPLHIDPESALEAGFETPILHGLCTLGFSARIVGAQFPPAVYKAQKVRFSSPVGPGDTLL 234 (272)
T ss_pred heeecchhhHHHHHHhcCCCCccccCHHHHHhcCCCCchhhhHHHhhhhHHHHHHhcCchhhheeeeeecCCCCCchhHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEEEEEEEE
Q 031503 113 GQLQAVNVR 121 (158)
Q Consensus 113 ~~~~v~~~~ 121 (158)
...+-.+++
T Consensus 235 ~~~wK~g~r 243 (272)
T KOG1206|consen 235 VLVWKQGLR 243 (272)
T ss_pred HHHHhhhce
Confidence 777655544
No 23
>PLN02864 enoyl-CoA hydratase
Probab=99.34 E-value=3.2e-11 Score=95.98 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=106.6
Q ss_pred ccCCcEEe-eeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhh----CCCCCceechhhHHHHHHHHhhc---cCC------
Q 031503 25 LKTGDILR-QTRIFSSEDVVEYSKVSHDSNPLHFNSESARN----AGFDDRLVHGMLVASMFPQIISS---HFP------ 90 (158)
Q Consensus 25 l~vG~~~~-~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~----~g~~~~i~~G~~~~a~~~~~~~~---~~~------ 90 (158)
..+|..++ ....++..|++.||...|+.+|.+.|++.++. .|+++..+++.|...+....... ..|
T Consensus 12 ~~~g~~~p~~~~~~~~~d~~lyAl~vG~~~~~~~d~~~l~~~ye~~g~~~~~a~PTf~~vl~~~~~~~~~~~~p~~~~d~ 91 (310)
T PLN02864 12 LVLAHKFPEVTYSYTERDVALYALGVGACGRDAVDEDELKYVYHRDGQQFIKVLPTFASLFNLGSLDGFGLDLPGLNYDP 91 (310)
T ss_pred HHhCCcCCCeeEEECHHHHHHHHHhcCCCCCCCCChHHhhhhhccccCCCcccCCceeeeccccCcccccccCCCCCCCh
Confidence 34788888 67799999999999999999999999999888 78899999999886654321101 112
Q ss_pred -CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEe-cCCcEEEEEEEEEEeec
Q 031503 91 -GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIK-NGELLVLDGEAMAFLPS 154 (158)
Q Consensus 91 -g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n-~~g~~v~~g~~~~~~~~ 154 (158)
..+|+.+++++++|+.+|++|+++++|.++.+++...++.++..+++ ++|+++++.+.+++.+.
T Consensus 92 ~~lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg 157 (310)
T PLN02864 92 SLLLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRG 157 (310)
T ss_pred hheeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeC
Confidence 35688999999999999999999999999976654456788888888 68999999999888754
No 24
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=99.16 E-value=1.1e-09 Score=78.08 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=67.7
Q ss_pred CHHHHhhCCCCCceechhhHH---HHHHHHhhccC---CC---eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeE
Q 031503 58 NSESARNAGFDDRLVHGMLVA---SMFPQIISSHF---PG---AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYL 128 (158)
Q Consensus 58 D~~~A~~~g~~~~i~~G~~~~---a~~~~~~~~~~---~g---~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~ 128 (158)
|..|.+....+.+++||.+.. +.+.+++.... ++ ...+..+++|++||++||+|++++++...+ ++.
T Consensus 46 d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~----~~~ 121 (147)
T PRK00006 46 NEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQLILEVELLKQR----RGI 121 (147)
T ss_pred CCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCEEEEEEEEEEee----CCE
Confidence 344556666789999998884 44443332221 22 234567999999999999999999998764 357
Q ss_pred EEEEEEEEecCCcEEEEEEEEEEeec
Q 031503 129 VKFSTKCIKNGELLVLDGEAMAFLPS 154 (158)
Q Consensus 129 v~~~~~~~n~~g~~v~~g~~~~~~~~ 154 (158)
+.+++++. ++|++|++|+.++++..
T Consensus 122 v~~~~~~~-~~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 122 WKFKGVAT-VDGKLVAEAELMFAIRD 146 (147)
T ss_pred EEEEEEEE-ECCEEEEEEEEEEEEEc
Confidence 78888884 79999999999998753
No 25
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.14 E-value=1.2e-09 Score=80.95 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=73.9
Q ss_pred cccCCcEEeeeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCCC--eeEEEEEEEE
Q 031503 24 ILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPG--AVYVSQSLHF 101 (158)
Q Consensus 24 dl~vG~~~~~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~g--~~~~~~~~rf 101 (158)
++++|........++.++. | + +.+++||+++++++.+++....++ ...+..+++|
T Consensus 79 eie~g~~a~~~k~Vt~ne~--f------------n---------~~~i~hG~f~~aqa~~la~~~~~~~~~~~~i~~irF 135 (185)
T PRK04424 79 DLELGRSAISILEITEEMV--F------------S---------KTGIARGHHLFAQANSLAVAVIDAELALTGVANIRF 135 (185)
T ss_pred EecCCcEEEEEEecChhhc--c------------C---------CCCeecHHHHHHHHHHHHHHhcCCcEEEEEeeeEEE
Confidence 5667766555566666441 0 1 356999999999988764322233 4567789999
Q ss_pred cCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 102 RLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 102 ~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
++||+|||+|++++++.+.+. +.+.+++++. ++|++|++|+++++.
T Consensus 136 ~kPV~pGD~L~~ea~v~~~~~----~~~~v~~~~~-v~g~~V~ege~~~~~ 181 (185)
T PRK04424 136 KRPVKLGERVVAKAEVVRKKG----NKYIVEVKSY-VGDELVFRGKFIMYR 181 (185)
T ss_pred ccCCCCCCEEEEEEEEEEccC----CEEEEEEEEE-ECCEEEEEEEEEEEE
Confidence 999999999999999997643 2445666664 789999999999977
No 26
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=1.1e-10 Score=88.33 Aligned_cols=107 Identities=12% Similarity=0.187 Sum_probs=87.1
Q ss_pred eEeeCHHHHHHHHhhcCCCCCcCCCHHHHhh-CCCCCceechhhHHHHHHHHhhccCCCeeEEEEEEEEcCCcccCCEEE
Q 031503 34 TRIFSSEDVVEYSKVSHDSNPLHFNSESARN-AGFDDRLVHGMLVASMFPQIISSHFPGAVYVSQSLHFRLPVYIGDEVL 112 (158)
Q Consensus 34 ~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~-~g~~~~i~~G~~~~a~~~~~~~~~~~g~~~~~~~~rf~~Pv~~Gd~l~ 112 (158)
..+.|+-++.+|++++.+.+.||||..||+. .||+++|+||.++..++..++....|.. +...++|-++|+|++++++
T Consensus 165 ~~tptpvllfrYsaltfN~HrIHyD~~Yat~vEgYpgLVvhGPl~atlll~~~~~~~pq~-~~Rf~fR~L~p~f~~~~lt 243 (273)
T COG3777 165 NFTPTPVLLFRYSALTFNGHRIHYDAPYATYVEGYPGLVVHGPLIATLLLRAFQPFLPQP-IRRFRFRNLSPAFPNETLT 243 (273)
T ss_pred cCCCCchheeehhhhccCceeeeccCcceeeccCCCCceecchHHHHHHHHHhhhhcccc-chheeccccccccCCCCee
Confidence 4577888889999999999999999999987 7999999999999999888877666644 5778899999999999999
Q ss_pred EEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEE
Q 031503 113 GQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAM 149 (158)
Q Consensus 113 ~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~ 149 (158)
+.+...+- + ..+.+..+.+|.+.++|.+.
T Consensus 244 i~~~l~~~------g--~~~~w~~~~~~pv~mrarV~ 272 (273)
T COG3777 244 ICGSLSGS------G--GAELWTIRGDGPVAMRARVF 272 (273)
T ss_pred EeeEecCC------C--ceEEEEecCCcchhheeeec
Confidence 98876541 1 13445556778777777653
No 27
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=99.05 E-value=5.8e-09 Score=72.37 Aligned_cols=90 Identities=22% Similarity=0.258 Sum_probs=66.7
Q ss_pred CHHHHhhCCCCCceechhhHHHHHHHHhh---ccC----CC---eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCee
Q 031503 58 NSESARNAGFDDRLVHGMLVASMFPQIIS---SHF----PG---AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRY 127 (158)
Q Consensus 58 D~~~A~~~g~~~~i~~G~~~~a~~~~~~~---~~~----~g---~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~ 127 (158)
|..|++...++++++||.+..-++.++.. ... .+ ...+..+++|.+|+++||+|++++++.+.+ ++
T Consensus 31 d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~----~~ 106 (131)
T cd01288 31 NEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLR----RG 106 (131)
T ss_pred CChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCCEEEEEEEEEEee----CC
Confidence 55577777788999999998544333322 111 11 234569999999999999999999999765 24
Q ss_pred EEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 128 LVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 128 ~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
.+.+++++ .++|+++++|+.+++.
T Consensus 107 ~~~~~~~~-~~~g~~v~~~~~~~~~ 130 (131)
T cd01288 107 IGKFKGKA-YVDGKLVAEAELMFAI 130 (131)
T ss_pred EEEEEEEE-EECCEEEEEEEEEEEE
Confidence 66777777 5799999999998864
No 28
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=98.91 E-value=3.1e-08 Score=82.38 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=74.4
Q ss_pred cCCCHHHHhhCCCCCceechhhHH---HHHHHHhhc-cC---CC---eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecC
Q 031503 55 LHFNSESARNAGFDDRLVHGMLVA---SMFPQIISS-HF---PG---AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMK 124 (158)
Q Consensus 55 iH~D~~~A~~~g~~~~i~~G~~~~---a~~~~~~~~-~~---~g---~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~ 124 (158)
++.|..|++...++.+++||.+.. |++.+++.. .. .+ ...+..+++|.+||+|||+|++++++++...
T Consensus 356 Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~-- 433 (464)
T PRK13188 356 VTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDTLIFKVELLSPIR-- 433 (464)
T ss_pred cCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCEEEEEEEEEEEec--
Confidence 455778888888899999999988 444444321 11 12 3345679999999999999999999987442
Q ss_pred CeeEEEEEEEEEecCCcEEEEEEEEEEeecC
Q 031503 125 KRYLVKFSTKCIKNGELLVLDGEAMAFLPSL 155 (158)
Q Consensus 125 ~~~~v~~~~~~~n~~g~~v~~g~~~~~~~~~ 155 (158)
++++.++.++. ++|++|++|+..+++.++
T Consensus 434 -~giv~f~g~~~-vdGelVaeael~~~v~~~ 462 (464)
T PRK13188 434 -RGICQMQGKAY-VNGKLVCEAELMAQIVKK 462 (464)
T ss_pred -CCEEEEEEEEE-ECCEEEEEEEEEEEEecc
Confidence 35778888886 899999999999988754
No 29
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=98.83 E-value=1.7e-07 Score=63.91 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=62.6
Q ss_pred CceechhhHHHHHHHHhhccC--C--CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEE
Q 031503 69 DRLVHGMLVASMFPQIISSHF--P--GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVL 144 (158)
Q Consensus 69 ~~i~~G~~~~a~~~~~~~~~~--~--g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~ 144 (158)
..++||.+++++++.+..... . .......+++|.+|+.+||+|.+++++.... +....++++++|++|++++
T Consensus 30 ~g~~HGG~i~al~D~~~~~~~~~~~~~~~t~~~~i~f~rp~~~G~~l~~~a~v~~~g----~~~~~~~~~i~~~~~~~va 105 (114)
T TIGR02286 30 HGTAHGGFLFSLADSAFAYACNSYGDAAVAAQCTIDFLRPGRAGERLEAEAVEVSRG----GRTGTYDVEVVNQEGELVA 105 (114)
T ss_pred CCCchHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCCCCEEEEEEEEEEeC----CcEEEEEEEEEcCCCCEEE
Confidence 348999999999887654322 1 2345678999999999999999999998542 3356788888999999999
Q ss_pred EEEEEEEe
Q 031503 145 DGEAMAFL 152 (158)
Q Consensus 145 ~g~~~~~~ 152 (158)
.++.++..
T Consensus 106 ~~~~t~~~ 113 (114)
T TIGR02286 106 LFRGTSRR 113 (114)
T ss_pred EEEEEEEE
Confidence 99888753
No 30
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=98.81 E-value=1e-07 Score=67.25 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=58.9
Q ss_pred CCceechhhHHHHHHHHhhcc----C---C-----CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEE
Q 031503 68 DDRLVHGMLVASMFPQIISSH----F---P-----GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKC 135 (158)
Q Consensus 68 ~~~i~~G~~~~a~~~~~~~~~----~---~-----g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~ 135 (158)
+.++.||.+..-.+.++.+-+ . + +...+..+++|++||++||+|++++++...+ .+.+.+++++
T Consensus 49 ~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~----~~~~~~~~~~ 124 (140)
T TIGR01750 49 EKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVPGDQLILHAEFLKKR----RKIGKFKGEA 124 (140)
T ss_pred CcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCCCCEEEEEEEEEEcc----CCEEEEEEEE
Confidence 578999988875554443211 0 1 1233458999999999999999999998643 2467777887
Q ss_pred EecCCcEEEEEEEEEEe
Q 031503 136 IKNGELLVLDGEAMAFL 152 (158)
Q Consensus 136 ~n~~g~~v~~g~~~~~~ 152 (158)
+++|+++++|+.++++
T Consensus 125 -~~~g~~va~~~~~~~~ 140 (140)
T TIGR01750 125 -TVDGKVVAEAEITFAI 140 (140)
T ss_pred -EECCEEEEEEEEEEEC
Confidence 5899999999998763
No 31
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=98.60 E-value=1.4e-06 Score=60.18 Aligned_cols=79 Identities=28% Similarity=0.352 Sum_probs=58.8
Q ss_pred CCCceechhhHHHHHHHHhhccC----------C--CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEE
Q 031503 67 FDDRLVHGMLVASMFPQIISSHF----------P--GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTK 134 (158)
Q Consensus 67 ~~~~i~~G~~~~a~~~~~~~~~~----------~--g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~ 134 (158)
-+.+++||.+..-++.+..+.+. + +...+..+++|++|+++||+|++++++.+.+. +.+.++++
T Consensus 39 p~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~----~~~~~~~~ 114 (131)
T cd00493 39 PGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRR----GLGKFDGR 114 (131)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeC----CEEEEEEE
Confidence 35689999988765554433221 1 23345689999999999999999999998753 47778888
Q ss_pred EEecCCcEEEEEEEEE
Q 031503 135 CIKNGELLVLDGEAMA 150 (158)
Q Consensus 135 ~~n~~g~~v~~g~~~~ 150 (158)
+.+ +|+++++++..+
T Consensus 115 ~~~-~g~~v~~~~~~~ 129 (131)
T cd00493 115 AYV-DGKLVAEAELMA 129 (131)
T ss_pred EEE-CCEEEEEEEEEE
Confidence 877 699999999443
No 32
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.47 E-value=6.8e-06 Score=58.12 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=64.9
Q ss_pred CCceechhhHHHHHHHHhhc----cCC---CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEec-C
Q 031503 68 DDRLVHGMLVASMFPQIISS----HFP---GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKN-G 139 (158)
Q Consensus 68 ~~~i~~G~~~~a~~~~~~~~----~~~---g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~-~ 139 (158)
+..++||.++++++....+- ..+ +......+++|.+|+..|+ +++.+++... ++.....++++++. .
T Consensus 49 ~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~-v~a~a~v~~~----G~~~~v~~i~v~~~~~ 123 (141)
T COG2050 49 PGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD-VTAEARVLHL----GRRVAVVEIEVKNDEG 123 (141)
T ss_pred CCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe-EEEEEEEEee----CCEEEEEEEEEEECCC
Confidence 45599999999998765442 222 2245688999999999999 9999999875 34455688888865 4
Q ss_pred CcEEEEEEEEEEeecCC
Q 031503 140 ELLVLDGEAMAFLPSLA 156 (158)
Q Consensus 140 g~~v~~g~~~~~~~~~~ 156 (158)
|++|+.++.++++.+.+
T Consensus 124 ~~lva~~~~t~~v~~~~ 140 (141)
T COG2050 124 GRLVAKGTGTYAVLRKR 140 (141)
T ss_pred CeEEEEEEEEEEEecCC
Confidence 59999999999987754
No 33
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.44 E-value=5.2e-06 Score=52.09 Aligned_cols=70 Identities=27% Similarity=0.310 Sum_probs=54.9
Q ss_pred eechhhHHHHHHHHhhcc----CC---CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEE
Q 031503 71 LVHGMLVASMFPQIISSH----FP---GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLV 143 (158)
Q Consensus 71 i~~G~~~~a~~~~~~~~~----~~---g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v 143 (158)
++||...++++......+ .+ .......+++|++|+.+||++++++++..+. +..+.+++++++++++++
T Consensus 3 ~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g----~~~~~~~~~v~~~~~~~~ 78 (79)
T PF03061_consen 3 IVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVG----RKSFTVEVEVYSEDGRLC 78 (79)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEE----SSEEEEEEEEEETTSCEE
T ss_pred EEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEEC----CEEEEEEEEEEECCCcEE
Confidence 688888888877654432 22 2456789999999999999999999999875 346788999999999887
Q ss_pred E
Q 031503 144 L 144 (158)
Q Consensus 144 ~ 144 (158)
+
T Consensus 79 ~ 79 (79)
T PF03061_consen 79 A 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 34
>PRK10293 acyl-CoA esterase; Provisional
Probab=98.44 E-value=3.9e-06 Score=59.23 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=61.7
Q ss_pred CceechhhHHHHHHHHhh---c-cCC-C--eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCc
Q 031503 69 DRLVHGMLVASMFPQIIS---S-HFP-G--AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGEL 141 (158)
Q Consensus 69 ~~i~~G~~~~a~~~~~~~---~-~~~-g--~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~ 141 (158)
..++||..+++++....+ . ..+ + ......+++|.+|+..| +|+++++++.. ++....++++++|++|+
T Consensus 50 ~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g-~l~a~a~vv~~----Gr~~~~~~~~v~d~~g~ 124 (136)
T PRK10293 50 FGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREG-RVRGVCKPLHL----GSRHQVWQIEIFDEKGR 124 (136)
T ss_pred cCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCc-eEEEEEEEEec----CCCEEEEEEEEEeCCCC
Confidence 348999999998876432 1 222 2 34568999999999888 69999988763 35577789999999999
Q ss_pred EEEEEEEEEEe
Q 031503 142 LVLDGEAMAFL 152 (158)
Q Consensus 142 ~v~~g~~~~~~ 152 (158)
+++.++.++.+
T Consensus 125 l~A~~~~t~~i 135 (136)
T PRK10293 125 LCCSSRLTTAI 135 (136)
T ss_pred EEEEEEEEEEE
Confidence 99999998875
No 35
>PRK10254 thioesterase; Provisional
Probab=98.43 E-value=6e-06 Score=58.35 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=61.9
Q ss_pred ceechhhHHHHHHHHhhc----cCC-C--eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcE
Q 031503 70 RLVHGMLVASMFPQIISS----HFP-G--AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELL 142 (158)
Q Consensus 70 ~i~~G~~~~a~~~~~~~~----~~~-g--~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~ 142 (158)
.++||..+++++....+. ..+ + ......++.|++|+..| +|++++++... ++....++++++|++|++
T Consensus 51 G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~g-~l~a~a~vi~~----Gr~~~v~~~~v~d~~g~l 125 (137)
T PRK10254 51 GLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSEG-KVRGVCQPLHL----GRQNQSWEIVVFDEQGRR 125 (137)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcCC-eEEEEEEEEec----CcCEEEEEEEEEcCCCCE
Confidence 389999999998755321 233 3 34568899999999877 79999998764 455777899999999999
Q ss_pred EEEEEEEEEe
Q 031503 143 VLDGEAMAFL 152 (158)
Q Consensus 143 v~~g~~~~~~ 152 (158)
++.++.+..+
T Consensus 126 ~a~~~~t~~i 135 (137)
T PRK10254 126 CCTCRLGTAV 135 (137)
T ss_pred EEEEEEEEEE
Confidence 9999999875
No 36
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.40 E-value=9.1e-06 Score=50.58 Aligned_cols=79 Identities=24% Similarity=0.274 Sum_probs=62.1
Q ss_pred CCceechhhHHHHHHHHhhccCC-------CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCC
Q 031503 68 DDRLVHGMLVASMFPQIISSHFP-------GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGE 140 (158)
Q Consensus 68 ~~~i~~G~~~~a~~~~~~~~~~~-------g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g 140 (158)
....+||.+...++..+...++. +......+++|++|+++||.+.++.++.+... ..+.+...+.+++|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~----~~~~~~~~~~~~~~ 89 (100)
T cd03440 14 GGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGR----SSVTVEVEVRNEDG 89 (100)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccc----cEEEEEEEEECCCC
Confidence 35589999998888766554331 34567888999999999999999999988753 35677888888889
Q ss_pred cEEEEEEEEE
Q 031503 141 LLVLDGEAMA 150 (158)
Q Consensus 141 ~~v~~g~~~~ 150 (158)
++++.+..+.
T Consensus 90 ~~~~~~~~~~ 99 (100)
T cd03440 90 KLVATATATF 99 (100)
T ss_pred CEEEEEEEEe
Confidence 9999987654
No 37
>PRK11688 hypothetical protein; Provisional
Probab=98.39 E-value=8.9e-06 Score=58.44 Aligned_cols=79 Identities=10% Similarity=0.120 Sum_probs=61.4
Q ss_pred CceechhhHHHHHHHHhhcc----CC----------------CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeE
Q 031503 69 DRLVHGMLVASMFPQIISSH----FP----------------GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYL 128 (158)
Q Consensus 69 ~~i~~G~~~~a~~~~~~~~~----~~----------------g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~ 128 (158)
..++||..++++++..++.. .+ .......+++|++|+. |+.|++++++... ++..
T Consensus 55 ~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a~a~v~~~----g~r~ 129 (154)
T PRK11688 55 QSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFTATSSVLRA----GNKV 129 (154)
T ss_pred cCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEEEEEEEEEc----cCCE
Confidence 34899999999887654321 10 1135689999999995 9999999999853 2446
Q ss_pred EEEEEEEEecCCcEEEEEEEEEEe
Q 031503 129 VKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 129 v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
+.++++++|++|++++.++.++++
T Consensus 130 ~~~~~~i~~~~g~lvA~a~~t~~v 153 (154)
T PRK11688 130 AVARMELHNEQGVHIASGTATYLV 153 (154)
T ss_pred EEEEEEEECCCCCEEEEEEEEEEe
Confidence 678889999999999999999875
No 38
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=98.37 E-value=1.1e-05 Score=55.10 Aligned_cols=77 Identities=17% Similarity=0.070 Sum_probs=60.4
Q ss_pred ceechhhHHHHHHHHhh----ccCC-C--eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcE
Q 031503 70 RLVHGMLVASMFPQIIS----SHFP-G--AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELL 142 (158)
Q Consensus 70 ~i~~G~~~~a~~~~~~~----~~~~-g--~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~ 142 (158)
-++||..+++++....+ ...+ + ......+++|.+|+..| .|++++++.+. ++....+++++++++|++
T Consensus 33 g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a~v~~~----gr~~~~~~~~i~~~~g~~ 107 (117)
T TIGR00369 33 GSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAIAQVVHL----GRQTGVAEIEIVDEQGRL 107 (117)
T ss_pred ccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEEEEEEec----CceEEEEEEEEECCCCCE
Confidence 37999999998775441 1122 3 24467899999999999 99999998753 355778899999999999
Q ss_pred EEEEEEEEE
Q 031503 143 VLDGEAMAF 151 (158)
Q Consensus 143 v~~g~~~~~ 151 (158)
|+.++.++.
T Consensus 108 va~~~~t~~ 116 (117)
T TIGR00369 108 CALSRGTTA 116 (117)
T ss_pred EEEEEEEEc
Confidence 999999875
No 39
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=98.37 E-value=1.5e-05 Score=53.43 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=62.1
Q ss_pred ceechhhHHHHHHHHhhc----cC-C--CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcE
Q 031503 70 RLVHGMLVASMFPQIISS----HF-P--GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELL 142 (158)
Q Consensus 70 ~i~~G~~~~a~~~~~~~~----~~-~--g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~ 142 (158)
.++||..+++++...... .. + .......+++|++|+.. +.+.+++++.+. ++..+.+++++++++|++
T Consensus 29 g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~v~~~----g~~~~~~~~~~~~~~~~~ 103 (113)
T cd03443 29 GIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARARVVKL----GRRLAVVEVEVTDEDGKL 103 (113)
T ss_pred CeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEEEEec----CceEEEEEEEEECCCCCE
Confidence 389999999988766542 22 1 34567899999999999 999999999875 245778899998888999
Q ss_pred EEEEEEEEE
Q 031503 143 VLDGEAMAF 151 (158)
Q Consensus 143 v~~g~~~~~ 151 (158)
+++|+.+++
T Consensus 104 ~a~a~~~~~ 112 (113)
T cd03443 104 VATARGTFA 112 (113)
T ss_pred EEEEEEEEe
Confidence 999998875
No 40
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=98.25 E-value=1.8e-05 Score=56.82 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=58.9
Q ss_pred CCCceechhhHHHHHHHHhhc---cCC-----------CeeEEEEEEEEcCCcccCC-EEEEEEEEEEEEecCCeeEEEE
Q 031503 67 FDDRLVHGMLVASMFPQIISS---HFP-----------GAVYVSQSLHFRLPVYIGD-EVLGQLQAVNVREMKKRYLVKF 131 (158)
Q Consensus 67 ~~~~i~~G~~~~a~~~~~~~~---~~~-----------g~~~~~~~~rf~~Pv~~Gd-~l~~~~~v~~~~~~~~~~~v~~ 131 (158)
.++++.||.+..-.+.++++- +.. +...+..+++|++||.||| +|+.++++++.+..+.+..+..
T Consensus 47 p~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~ 126 (150)
T cd01287 47 HGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIA 126 (150)
T ss_pred CCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCccEEEE
Confidence 468899999987544433221 111 1123568999999999999 8999999999875434456677
Q ss_pred EEEEEecCCcEEEEEEEEE
Q 031503 132 STKCIKNGELLVLDGEAMA 150 (158)
Q Consensus 132 ~~~~~n~~g~~v~~g~~~~ 150 (158)
+..++ .+|++|++++..-
T Consensus 127 ~~~~~-vdg~~v~~a~~~~ 144 (150)
T cd01287 127 DASLW-VDGLRIYEAKDIA 144 (150)
T ss_pred EEEEE-ECCEEEEEEEccE
Confidence 77764 4999999987543
No 41
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=98.22 E-value=1.9e-05 Score=55.60 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=48.5
Q ss_pred CCCceechhhHHHHHHHH---hhcc-----CCC------eeEEEEEEEEcCCcccCC-EEEEEEEEEEEEecCCeeEEEE
Q 031503 67 FDDRLVHGMLVASMFPQI---ISSH-----FPG------AVYVSQSLHFRLPVYIGD-EVLGQLQAVNVREMKKRYLVKF 131 (158)
Q Consensus 67 ~~~~i~~G~~~~a~~~~~---~~~~-----~~g------~~~~~~~~rf~~Pv~~Gd-~l~~~~~v~~~~~~~~~~~v~~ 131 (158)
-+.+++||.++.-.+.+. +..+ ..+ ...+..+++|++||+||| +|++++++.+..... +..+.+
T Consensus 45 p~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~-~~~~~~ 123 (138)
T PF07977_consen 45 PGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRRE-GGMAIF 123 (138)
T ss_dssp TTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEE-TTEEEE
T ss_pred CCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCCcEEEEEEEEEEeeccc-CCEEEE
Confidence 467899999887443332 2111 112 134679999999999999 999999999842222 346666
Q ss_pred EEEEEecCCcEEEEEE
Q 031503 132 STKCIKNGELLVLDGE 147 (158)
Q Consensus 132 ~~~~~n~~g~~v~~g~ 147 (158)
+.+++ .+|+.|++++
T Consensus 124 ~~~~~-vdg~~v~~~~ 138 (138)
T PF07977_consen 124 DGTAY-VDGELVAEAE 138 (138)
T ss_dssp EEEEE-ETTEEEEEEE
T ss_pred EEEEE-ECCEEEEEEC
Confidence 66664 5999999875
No 42
>PLN02322 acyl-CoA thioesterase
Probab=98.19 E-value=6.6e-05 Score=54.06 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=60.4
Q ss_pred ceechhhHHHHHHHHhh--cc-CC---CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEec-----
Q 031503 70 RLVHGMLVASMFPQIIS--SH-FP---GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKN----- 138 (158)
Q Consensus 70 ~i~~G~~~~a~~~~~~~--~~-~~---g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~----- 138 (158)
.++||..+++++..+.+ .. .. .......++.|++|+..||+|+++++++.. ++....++++++|+
T Consensus 43 G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~G~~L~Aea~vv~~----Gr~~~~~ev~V~~~~~~~~ 118 (154)
T PLN02322 43 KVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADLGDLVFAEATPVST----GKTIQVWEVKLWKTTDKDK 118 (154)
T ss_pred CCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCCCCEEEEEEEEEec----CCCEEEEEEEEEECCCCcc
Confidence 38999999999875532 11 11 235578999999999999999999999864 34566788888884
Q ss_pred -CCcEEEEEEEEEEe
Q 031503 139 -GELLVLDGEAMAFL 152 (158)
Q Consensus 139 -~g~~v~~g~~~~~~ 152 (158)
+|++++.++.++..
T Consensus 119 ~~~~lva~a~~T~~~ 133 (154)
T PLN02322 119 ANKILISSSRVTLIC 133 (154)
T ss_pred cCCeEEEEEEEEEEE
Confidence 27899999988854
No 43
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=98.19 E-value=5.8e-05 Score=53.90 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=59.0
Q ss_pred CCceechhhHHHHH---HHHhhccCCC------eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEec
Q 031503 68 DDRLVHGMLVASMF---PQIISSHFPG------AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKN 138 (158)
Q Consensus 68 ~~~i~~G~~~~a~~---~~~~~~~~~g------~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~ 138 (158)
+.||.||.+..-.+ .+++..+..+ ...+..++||++||.|||.+.++++++..+. +.+.....+. ..
T Consensus 54 ~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~---~~~~~~~~~a-~V 129 (147)
T COG0764 54 GDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRR---LGIGKAKGVA-TV 129 (147)
T ss_pred CCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCCCEEEEEEEEEEecc---cceEEEEEEE-EE
Confidence 67899999987543 3444444432 1356899999999999999999999887542 2233444444 35
Q ss_pred CCcEEEEEEEEEEeec
Q 031503 139 GELLVLDGEAMAFLPS 154 (158)
Q Consensus 139 ~g~~v~~g~~~~~~~~ 154 (158)
+|+++++++..++.-.
T Consensus 130 dg~~v~~a~~~~~~~~ 145 (147)
T COG0764 130 DGKVVAEAELLFAGVE 145 (147)
T ss_pred CCEEEEEEEEEEEEee
Confidence 9999999998887643
No 44
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=98.12 E-value=9.4e-05 Score=50.16 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=57.7
Q ss_pred eechhhHHHHHHHHhhcc----CC-CeeEEEE-EEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecC-----
Q 031503 71 LVHGMLVASMFPQIISSH----FP-GAVYVSQ-SLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNG----- 139 (158)
Q Consensus 71 i~~G~~~~a~~~~~~~~~----~~-g~~~~~~-~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~----- 139 (158)
++||...+.++..+.... .. ....... +++|++|+.+||.|.+++++..+. +..+.+++++++++
T Consensus 24 ~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g----~~~~~~~~~i~~~~~~~~~ 99 (123)
T cd03442 24 TIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTG----RTSMEVGVEVEAEDPLTGE 99 (123)
T ss_pred cEeHHHHHHHHHHHHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEec----CCeEEEEEEEEEecCCCCc
Confidence 678888887766543221 12 2333444 799999999999999999998863 34567777777764
Q ss_pred CcEEEEEEEEEEeec
Q 031503 140 ELLVLDGEAMAFLPS 154 (158)
Q Consensus 140 g~~v~~g~~~~~~~~ 154 (158)
++++++|..+++...
T Consensus 100 ~~~~a~~~~~~v~~~ 114 (123)
T cd03442 100 RRLVTSAYFTFVALD 114 (123)
T ss_pred EEEEEEEEEEEEEEC
Confidence 468999999887764
No 45
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.08 E-value=5.6e-05 Score=49.47 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=61.5
Q ss_pred CceechhhHHHHHHHHhhccCC------CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcE
Q 031503 69 DRLVHGMLVASMFPQIISSHFP------GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELL 142 (158)
Q Consensus 69 ~~i~~G~~~~a~~~~~~~~~~~------g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~ 142 (158)
+..+||..+++++...+..... .......++.|++|...|+.+..++++... ++++...++++++++|++
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~i~~~~G~l 89 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRD----GRSRALRRGRAYQRDGKL 89 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEEeccc----CCCceEEEEEEECCCCcE
Confidence 5689999999888765443221 134568899999999999999999988753 355777888888888999
Q ss_pred EEEEEEEEE
Q 031503 143 VLDGEAMAF 151 (158)
Q Consensus 143 v~~g~~~~~ 151 (158)
|+.+..+++
T Consensus 90 va~~~~~~~ 98 (99)
T cd00556 90 VASATQSFL 98 (99)
T ss_pred EEEEEEeEc
Confidence 999988765
No 46
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=98.07 E-value=7.3e-05 Score=48.97 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=48.0
Q ss_pred CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 91 GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 91 g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
+......+++|++|+++||++++++++.+.. +..+.+..++.+.+|++++.++...+.
T Consensus 51 ~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~----~~~~~~~~~~~~~~g~~~a~~~~~~~~ 108 (110)
T cd00586 51 GLVVVELEIDYLRPLRLGDRLTVETRVLRLG----RKSFTFEQEIFREDGELLATAETVLVC 108 (110)
T ss_pred eEEEEEeEeeEcCccCCCCEEEEEEEEEecC----cEEEEEEEEEECCCCeEEEEEEEEEEE
Confidence 3566789999999999999999999998863 235567778877789999999988764
No 47
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=98.02 E-value=0.00014 Score=51.40 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=57.5
Q ss_pred ceechhhHHHHHHHH---h----hc-c-CC---CeeEEEEEEEEcCCccc-CCEEEEEEEEEEEEecCCeeEEEEEEEEE
Q 031503 70 RLVHGMLVASMFPQI---I----SS-H-FP---GAVYVSQSLHFRLPVYI-GDEVLGQLQAVNVREMKKRYLVKFSTKCI 136 (158)
Q Consensus 70 ~i~~G~~~~a~~~~~---~----~~-~-~~---g~~~~~~~~rf~~Pv~~-Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~ 136 (158)
++.||.+..-.+.+. . .. . -+ |.+.+..+++|++|+++ ||+|+++++...... +++..++.+++
T Consensus 45 ~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~---~~~~~~~~~~~ 121 (138)
T cd01289 45 GRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGD---SGLGVFECTIE 121 (138)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCC---CcEEEEEEEEE
Confidence 578888776433332 1 11 1 12 34556799999999988 999999998876542 24666777764
Q ss_pred ecCCcEEEEEEEEEEeec
Q 031503 137 KNGELLVLDGEAMAFLPS 154 (158)
Q Consensus 137 n~~g~~v~~g~~~~~~~~ 154 (158)
.+|+++++|+.+++.|+
T Consensus 122 -v~~~~va~a~l~~~~p~ 138 (138)
T cd01289 122 -DQGGVLASGRLNVYQPA 138 (138)
T ss_pred -ECCEEEEEEEEEEEcCC
Confidence 58899999999999874
No 48
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=98.00 E-value=0.00022 Score=52.29 Aligned_cols=92 Identities=12% Similarity=0.018 Sum_probs=62.9
Q ss_pred HHhhCCCCCceechhhHHHHHHHHhhcc---CC----CeeEEEEEEEEcCCcccCCE-EEEEEEEEEEEecCCeeEEEEE
Q 031503 61 SARNAGFDDRLVHGMLVASMFPQIISSH---FP----GAVYVSQSLHFRLPVYIGDE-VLGQLQAVNVREMKKRYLVKFS 132 (158)
Q Consensus 61 ~A~~~g~~~~i~~G~~~~a~~~~~~~~~---~~----g~~~~~~~~rf~~Pv~~Gd~-l~~~~~v~~~~~~~~~~~v~~~ 132 (158)
|-+....+++++||.+..-.+.+.++-+ .. +...+..+++|+++|+|||+ ++.++++++.... .++++.++
T Consensus 67 ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~~-~~~~~~~~ 145 (172)
T PRK05174 67 FFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKRVINR-KLVMGIAD 145 (172)
T ss_pred cccCCCCCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCCCEEEEEEEEEEEEecC-CCCEEEEE
Confidence 3333435789999999875544433221 11 23456789999999999998 8999999887542 24567777
Q ss_pred EEEEecCCcEEEEE---EEEEEeec
Q 031503 133 TKCIKNGELLVLDG---EAMAFLPS 154 (158)
Q Consensus 133 ~~~~n~~g~~v~~g---~~~~~~~~ 154 (158)
+++. .+|++++++ ...+.-|.
T Consensus 146 ~~i~-v~g~~va~a~~~~l~~~~~~ 169 (172)
T PRK05174 146 GRVL-VDGEEIYTAKDLKVGLFKDT 169 (172)
T ss_pred EEEE-ECCEEEEEEEeeEEEEeccC
Confidence 7775 689999999 44444443
No 49
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=97.92 E-value=0.00033 Score=51.19 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=61.3
Q ss_pred HHhhCCCCCceechhhHHHHHHHHhhc---cC--C--CeeEEEEEEEEcCCcccCCEE-EEEEEEEEEEecCCeeEEEEE
Q 031503 61 SARNAGFDDRLVHGMLVASMFPQIISS---HF--P--GAVYVSQSLHFRLPVYIGDEV-LGQLQAVNVREMKKRYLVKFS 132 (158)
Q Consensus 61 ~A~~~g~~~~i~~G~~~~a~~~~~~~~---~~--~--g~~~~~~~~rf~~Pv~~Gd~l-~~~~~v~~~~~~~~~~~v~~~ 132 (158)
|-+..-.+++++||.+..-.+.++++- +. + +...+..+++|++||+|||++ +.++++++..... ++++.++
T Consensus 64 ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~~~~~~-~~~~~~~ 142 (169)
T TIGR01749 64 FFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAKKVTYRIHFKRVINRR-LVMGIAD 142 (169)
T ss_pred ceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCCeEEEEEEEEEEEeecC-CcEEEEE
Confidence 434344578899999987554443322 21 1 234456899999999999997 8888888764332 3466666
Q ss_pred EEEEecCCcEEEE---EEEEEEeec
Q 031503 133 TKCIKNGELLVLD---GEAMAFLPS 154 (158)
Q Consensus 133 ~~~~n~~g~~v~~---g~~~~~~~~ 154 (158)
+++. .+|++|++ +...+.-|.
T Consensus 143 ~~i~-v~g~~va~a~~~~~~~~~~~ 166 (169)
T TIGR01749 143 GEVL-VDGRLIYTASDLRVGLFTST 166 (169)
T ss_pred EEEE-ECCEEEEEEECCEEEEecCC
Confidence 6664 58899998 555555554
No 50
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=97.92 E-value=0.00022 Score=49.39 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=49.8
Q ss_pred CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEeec
Q 031503 91 GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLPS 154 (158)
Q Consensus 91 g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~~ 154 (158)
++.+...+++|++|++.||+|.++.++.+... ..+++..++.+++|+++++|+.+.+.-.
T Consensus 53 ~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~----~s~~~~~~i~~~~g~~~a~~~~~~v~~d 112 (130)
T PRK10800 53 AFVVRKMTVEYYAPARLDDMLEVQSEITSMRG----TSLTFTQRIVNAEGTLLNEAEVLIVCVD 112 (130)
T ss_pred EEEEEEEEEEEcCcccCCCEEEEEEEEEeeCc----EEEEEEEEEEcCCCeEEEEEEEEEEEEE
Confidence 45678999999999999999999999998742 3456777788889999999998877643
No 51
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.69 E-value=0.0017 Score=42.78 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=61.3
Q ss_pred CCceechhhHHHHHHHHhhccCCC-eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEE
Q 031503 68 DDRLVHGMLVASMFPQIISSHFPG-AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDG 146 (158)
Q Consensus 68 ~~~i~~G~~~~a~~~~~~~~~~~g-~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g 146 (158)
.+..++|.++++++........+. ....+....|.+|..++.++..++++.. .++.+....+++ -|+|++++.+
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~~~~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr----~GRs~~~~~V~~-~Q~g~~~~~a 88 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTVPDDRVPHSLHSYFLRPGDPDQPIEYEVERLR----DGRSFATRRVRA-VQNGKVIFTA 88 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhCCCCCCeEEEEEEecCCCCCCCCEEEEEEEEE----CCCcEEEEEEEE-EECCEEEEEE
Confidence 456889999999887766666663 5567899999999999999998888864 345677777777 4789999988
Q ss_pred EEEE
Q 031503 147 EAMA 150 (158)
Q Consensus 147 ~~~~ 150 (158)
.+++
T Consensus 89 ~~sf 92 (94)
T cd03445 89 TASF 92 (94)
T ss_pred EEEE
Confidence 8775
No 52
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=97.58 E-value=0.0014 Score=46.08 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=48.9
Q ss_pred eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEeec
Q 031503 92 AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLPS 154 (158)
Q Consensus 92 ~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~~ 154 (158)
......+++|++|++.||.++++.++.+... ..+.+..++++++ +++++|+.+.+.-+
T Consensus 57 ~~v~~~~i~y~~p~~~~d~l~v~~~v~~~~~----~s~~~~~~i~~~~-~l~a~~~~~~V~v~ 114 (137)
T COG0824 57 FVVVEAEIDYLRPARLGDVLTVRTRVEELGG----KSLTLGYEIVNED-ELLATGETTLVCVD 114 (137)
T ss_pred EEEEEEEeEECCCccCCCEEEEEEEEEeecC----eEEEEEEEEEeCC-EEEEEEEEEEEEEE
Confidence 3467899999999999999999999998753 3677888888877 99999999887644
No 53
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=97.47 E-value=0.0021 Score=43.82 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=45.3
Q ss_pred eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 92 AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 92 ~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
..+...+++|++|+..||+|++..++.+... ....+..++. .+|++++.|..+.+.
T Consensus 53 ~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~~----~~~~~~~~i~-~~g~~~a~~~~~~v~ 108 (126)
T TIGR02799 53 FVVRSMELDYLKPARLDDLLTVTTRVVELKG----ASLVFAQEVR-RGDTLLCEATVEVAC 108 (126)
T ss_pred EEEEEEEEEEcCcccCCCEEEEEEEEEecCc----eEEEEEEEEE-eCCEEEEEEEEEEEE
Confidence 4667899999999999999999999988642 3455666776 478999999887665
No 54
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=97.46 E-value=0.004 Score=44.89 Aligned_cols=83 Identities=19% Similarity=0.100 Sum_probs=55.9
Q ss_pred eechhhHHHHHHHH---hhc-cCCCe-e-EEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecC---Cc
Q 031503 71 LVHGMLVASMFPQI---ISS-HFPGA-V-YVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNG---EL 141 (158)
Q Consensus 71 i~~G~~~~a~~~~~---~~~-~~~g~-~-~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~---g~ 141 (158)
-++|++++++++.. .+. +..+. + ..-.++.|.+||+.||.|.+.+++...-.. .-.|.++++..|-. -+
T Consensus 30 ~ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrT--Sm~V~Vev~~~~~~~~~~~ 107 (157)
T COG1607 30 TIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRT--SMEVGVEVWAEDIRSGERR 107 (157)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCeEEEEEeceEEEccccccCcEEEEEEEEeecCcc--cEEEEEEEEEecccCCcce
Confidence 48999999987643 233 33343 2 246899999999999999999999875321 22344444444432 35
Q ss_pred EEEEEEEEEEeecC
Q 031503 142 LVLDGEAMAFLPSL 155 (158)
Q Consensus 142 ~v~~g~~~~~~~~~ 155 (158)
.++++.++++....
T Consensus 108 ~~t~~~ft~VAvd~ 121 (157)
T COG1607 108 LATSAYFTFVAVDE 121 (157)
T ss_pred EeeeEEEEEEEECC
Confidence 57788888887654
No 55
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=97.44 E-value=0.0057 Score=46.92 Aligned_cols=81 Identities=22% Similarity=0.220 Sum_probs=59.4
Q ss_pred CceechhhHHHHHHHHhhccCC--CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEE
Q 031503 69 DRLVHGMLVASMFPQIISSHFP--GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDG 146 (158)
Q Consensus 69 ~~i~~G~~~~a~~~~~~~~~~~--g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g 146 (158)
+..+||.++++++...+....+ +.......+.|.+|+.+| .+.+++++.. . |+.+..+++++. |+|++++.+
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~~~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r--~--Gr~~~~~~v~~~-q~~~~~~~a 82 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHAPPPGFDPHSLHVYFLRPVPPG-PVEYRVEVLR--D--GRSFSTRQVELS-QDGKVVATA 82 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCHTTTSSEEEEEEEEESS--BSC-EEEEEEEEEE--E--SSSEEEEEEEEE-ETTEEEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhccCCCCceEEEEeEeccccccC-CEEEEEEEee--C--CCcEEEEEEEEE-ECCcCEEEE
Confidence 4579999888887777666542 456789999999999999 9998888874 2 355667777774 899999999
Q ss_pred EEEEEeecC
Q 031503 147 EAMAFLPSL 155 (158)
Q Consensus 147 ~~~~~~~~~ 155 (158)
.+++..+..
T Consensus 83 ~~~f~~~~~ 91 (255)
T PF13622_consen 83 TASFGRPEP 91 (255)
T ss_dssp EEEEE--TT
T ss_pred EEEEccCcC
Confidence 999887664
No 56
>COG5496 Predicted thioesterase [General function prediction only]
Probab=97.28 E-value=0.029 Score=38.85 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=69.7
Q ss_pred cCCcEEeeeEeeCHHHHHHHHhhcCCCCCcCCCHHHHhhCCCCCceechhhHHHH---HHHHhhccCC-C--eeEEEEEE
Q 031503 26 KTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASM---FPQIISSHFP-G--AVYVSQSL 99 (158)
Q Consensus 26 ~vG~~~~~~~~vt~~~~~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~---~~~~~~~~~~-g--~~~~~~~~ 99 (158)
..|...+..+.+++.+ .++ ++...+....++-|.++.-+ ...++..+++ | ++-....+
T Consensus 2 ~~g~~~e~~~lv~dn~---------------t~~-~~~~~~~~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~v 65 (130)
T COG5496 2 MDGLTLEGEFLVRDNH---------------TVP-PAEGSGMLNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLV 65 (130)
T ss_pred CCceeeEEEEEecccc---------------cCc-hhHhCCccceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEe
Confidence 4566666666665533 333 24445555666666655432 1234445666 3 34456788
Q ss_pred EEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 100 HFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 100 rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
|-.+|+.+|.++++.+++.++. +..+.+++++. .+|+++.+|+-+=.+
T Consensus 66 rHla~~~~G~~V~i~~~l~~v~----Gr~v~f~i~a~-~~~~~Ig~g~h~R~i 113 (130)
T COG5496 66 RHLAATPPGLTVTIGARLEKVE----GRKVKFRIIAM-EGGDKIGEGTHTRVI 113 (130)
T ss_pred eeccCCCCCCeEEEEEEEEEEe----ccEEEEEEEEe-eCCcEEeeeEEEEEE
Confidence 9999999999999999999875 34678888886 788999988765433
No 57
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=97.27 E-value=0.0058 Score=40.88 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=42.6
Q ss_pred CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEE
Q 031503 91 GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEA 148 (158)
Q Consensus 91 g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~ 148 (158)
+..+...+++|++|+..||+++++.++.+.. +..+.+..++.+++|+++..+..
T Consensus 48 ~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~----~~s~~~~~~i~~~~~~~~~~~~~ 101 (117)
T TIGR00051 48 AFVVVNINIEYKKPARLDDVLEIRTQIEELN----GFSFVFSQEIFNEDEALLKAATV 101 (117)
T ss_pred EEEEEEEEEEECCcccCCCEEEEEEEEEecC----cEEEEEEEEEEeCCCcEEEeeEE
Confidence 3567789999999999999999999998864 23456777788877777666655
No 58
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=97.26 E-value=0.0015 Score=48.74 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=61.1
Q ss_pred eeEeeCHHHHHHHHhh-cCCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHHhhccCCCeeEEEEEEEEcCCcccCCEE
Q 031503 33 QTRIFSSEDVVEYSKV-SHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFPGAVYVSQSLHFRLPVYIGDEV 111 (158)
Q Consensus 33 ~~~~vt~~~~~~fa~~-sgD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~~~~~~~g~~~~~~~~rf~~Pv~~Gd~l 111 (158)
....||+++..+||+- .||+||||-- +. ++-.+||=+++|++..-. .+-..+.++|.+.|-.|-.|
T Consensus 12 ~~v~is~~QAS~FAK~VAgDFNPIHD~-Da------KRFCVPGDLLFalvL~~~------GlS~~M~f~F~GMVg~~v~L 78 (218)
T PF12119_consen 12 GSVSISAEQASRFAKEVAGDFNPIHDP-DA------KRFCVPGDLLFALVLAKY------GLSQKMRFRFSGMVGDDVPL 78 (218)
T ss_pred CEEEEcHHHHhHHHHHhccCCCccCCC-CC------ccccCccHHHHHHHHHhc------CccceeEEEEeeeecCCcee
Confidence 3568999999999985 5999999942 22 455899999998875321 11245789999999888777
Q ss_pred EEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEE
Q 031503 112 LGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEA 148 (158)
Q Consensus 112 ~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~ 148 (158)
.+.-...+ ...+.|++|+..++-+.
T Consensus 79 ~f~~~~~~------------~~~v~D~~gK~yL~v~r 103 (218)
T PF12119_consen 79 HFPETDDD------------EFDVCDEQGKEYLEVER 103 (218)
T ss_pred eccCCCCC------------eEEEEcCCCCEEEEEEE
Confidence 65433211 12344666666655443
No 59
>PRK10694 acyl-CoA esterase; Provisional
Probab=97.25 E-value=0.013 Score=41.09 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=52.0
Q ss_pred eechhhHHHHHHHHh---hccCC-C-eeEE-EEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEec------
Q 031503 71 LVHGMLVASMFPQII---SSHFP-G-AVYV-SQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKN------ 138 (158)
Q Consensus 71 i~~G~~~~a~~~~~~---~~~~~-g-~~~~-~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~------ 138 (158)
.+||..++.++.... ...+. + ..+. ..++.|.+|++.||.|+++++|.... +.-+++++++..+
T Consensus 28 ~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g----~sS~~v~v~v~~~~~~~~~ 103 (133)
T PRK10694 28 DIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTG----TTSISINIEVWVKKVASEP 103 (133)
T ss_pred cEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEEEEEEEEEEcc----CceEEEEEEEEEeecccCC
Confidence 799999998876432 22222 2 3344 45779999999999999999998753 2244445554431
Q ss_pred CC--cEEEEEEEEEEee
Q 031503 139 GE--LLVLDGEAMAFLP 153 (158)
Q Consensus 139 ~g--~~v~~g~~~~~~~ 153 (158)
.| ++++++.++++.-
T Consensus 104 ~g~~~~~~~~~~tfVav 120 (133)
T PRK10694 104 IGQRYKATEALFTYVAV 120 (133)
T ss_pred CCcEEEEEEEEEEEEEE
Confidence 12 3467888887663
No 60
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=97.20 E-value=0.0041 Score=43.84 Aligned_cols=80 Identities=10% Similarity=-0.028 Sum_probs=53.9
Q ss_pred ceechhhHHHHHHHHhh--------ccCC--CeeEEEEEEEEcCCcccCCEEEEEEEEEEE---------EecCCeeEEE
Q 031503 70 RLVHGMLVASMFPQIIS--------SHFP--GAVYVSQSLHFRLPVYIGDEVLGQLQAVNV---------REMKKRYLVK 130 (158)
Q Consensus 70 ~i~~G~~~~a~~~~~~~--------~~~~--g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~---------~~~~~~~~v~ 130 (158)
-.+||...++++..... ...+ ..+....+++|++|+..+ +.+.+++... -.++++..+.
T Consensus 38 G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~~--~~a~~~~~~~~~~~~~~~~l~~~gr~~~~ 115 (138)
T TIGR02447 38 GTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTGD--PVANCEAPDLESWEAFLATLQRGGKARVK 115 (138)
T ss_pred CceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCCC--eEEEEEcCCHHHHHHHHHHHHhCCceEEE
Confidence 37999998888742211 1111 345678999999999863 6666665321 0233466778
Q ss_pred EEEEEEecCCcEEEEEEEEEEe
Q 031503 131 FSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 131 ~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
++++++ ++|++|+.++.++.+
T Consensus 116 ~~~~v~-~~~~lvA~~~g~~~~ 136 (138)
T TIGR02447 116 LEAQIS-SDGKLAATFSGEYVA 136 (138)
T ss_pred EEEEEE-ECCEEEEEEEEEEEE
Confidence 899988 578999999888765
No 61
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=97.17 E-value=0.011 Score=40.06 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=42.3
Q ss_pred eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEe-cCCcE--EEEEEEEEEee
Q 031503 92 AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIK-NGELL--VLDGEAMAFLP 153 (158)
Q Consensus 92 ~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n-~~g~~--v~~g~~~~~~~ 153 (158)
......+++|++|+..||++++..++.+... ..+.+..++++ .+|+. +++|+.+.+.-
T Consensus 44 ~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~----~s~~~~~~i~~~~~g~~~~~a~~~~~~v~~ 104 (121)
T PF13279_consen 44 FVVAESEIDYLRPLRFGDRLEVETRVEEIGG----KSFRFEQEIFRPADGKGELAATGRTVMVFV 104 (121)
T ss_dssp EEEEEEEEEE-S--BTTSEEEEEEEEEEEES----SEEEEEEEEEECSTTEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEcccccCCCEEEEEEEEEEECC----cEEEEEEEEEEcCCCceEEEEEEEEEEEEE
Confidence 4567899999999999999999999987653 35667777766 35655 88888877663
No 62
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=96.94 E-value=0.012 Score=45.66 Aligned_cols=77 Identities=13% Similarity=-0.001 Sum_probs=61.2
Q ss_pred eechhhHHHHHHHHhhccCC-CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEE
Q 031503 71 LVHGMLVASMFPQIISSHFP-GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAM 149 (158)
Q Consensus 71 i~~G~~~~a~~~~~~~~~~~-g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~ 149 (158)
-+.|.+++|++........+ +....+..+.|.+|..++..+..+++++. .|+.+...++++ -|+|++++.+.+.
T Consensus 22 ~~fGG~~~Aqal~Aa~~tv~~~~~~~S~h~~Fl~~~~~~~pv~~~V~~lR----~GRs~~~r~V~~-~Q~g~~~~~a~as 96 (271)
T TIGR00189 22 RVFGGQVVGQALAAASKTVPEEFIPHSLHSYFVRAGDPKKPIIYDVERLR----DGRSFITRRVKA-VQHGKTIFTLQAS 96 (271)
T ss_pred ceEccHHHHHHHHHHHhcCCCCCCcceeEEEecCCCCCCCCEEEEEEEee----CCCceEEEEEEE-EECCEEEEEEEEE
Confidence 68999999887766655555 44556889999999999999998888764 345677777877 4899999999998
Q ss_pred EEe
Q 031503 150 AFL 152 (158)
Q Consensus 150 ~~~ 152 (158)
+..
T Consensus 97 f~~ 99 (271)
T TIGR00189 97 FQA 99 (271)
T ss_pred ccc
Confidence 873
No 63
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=96.80 E-value=0.026 Score=40.10 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=59.6
Q ss_pred eechhhHHHHHHHHhhc------cCCCeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEec-CCcEE
Q 031503 71 LVHGMLVASMFPQIISS------HFPGAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKN-GELLV 143 (158)
Q Consensus 71 i~~G~~~~a~~~~~~~~------~~~g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~-~g~~v 143 (158)
..||..++.++..+-+. .+...+-...++.|+.|..+||.|.+++.++... +...-++++.++. +|+..
T Consensus 55 ~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a~~vr~G----k~la~t~v~l~~K~t~kii 130 (148)
T KOG3328|consen 55 TLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKLGEELEIEATVVRVG----KTLAFTDVELRRKSTGKII 130 (148)
T ss_pred cccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCCCCeEEEEEEEeecC----ceEEEEEEEEEEcCCCeEE
Confidence 68999998877654332 2333455789999999999999999999998752 3455556666664 69999
Q ss_pred EEEEEEEEeec
Q 031503 144 LDGEAMAFLPS 154 (158)
Q Consensus 144 ~~g~~~~~~~~ 154 (158)
+.|+.+.+...
T Consensus 131 a~grhtk~~~~ 141 (148)
T KOG3328|consen 131 AKGRHTKYFRP 141 (148)
T ss_pred EecceEEEeec
Confidence 99998887754
No 64
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.69 E-value=0.018 Score=48.92 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=48.8
Q ss_pred CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEee
Q 031503 91 GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLP 153 (158)
Q Consensus 91 g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~ 153 (158)
+..+...+++|++|+..||+++++.++.+... ....+..++++.+|+++++|+.+.+.-
T Consensus 395 ~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~~~----~s~~~~~~i~~~~g~l~A~g~~~~v~v 453 (495)
T PRK07531 395 SYYTVETHIRHLGEAKAGQALHVETQLLSGDE----KRLHLFHTLYDAGGELIATAEHMLLHV 453 (495)
T ss_pred cEEEEEEEEEEcccCCCCCEEEEEEEEEecCC----cEEEEEEEEECCCCcEEEEEEEEEEEE
Confidence 45678999999999999999999999988642 355677788888899999998887663
No 65
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=96.67 E-value=0.04 Score=43.50 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=62.5
Q ss_pred CceechhhHHHHHHHHhhccCC-CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEE
Q 031503 69 DRLVHGMLVASMFPQIISSHFP-GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGE 147 (158)
Q Consensus 69 ~~i~~G~~~~a~~~~~~~~~~~-g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~ 147 (158)
..-+.|++++|++........+ +....+..+.|.+|..++..+..+++.+. +|+.+.+..++++ |+|++++.+.
T Consensus 31 ~r~~fGGqv~AQal~AA~~tv~~~~~~hSlh~~Fl~pg~~~~pi~y~Ve~lR----dGRSfstr~V~a~-Q~g~~if~~~ 105 (286)
T PRK10526 31 LRQVFGGQVVGQALYAAKETVPEERLVHSFHSYFLRPGDSQKPIIYDVETLR----DGNSFSARRVAAI-QNGKPIFYMT 105 (286)
T ss_pred CCceechHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCCEEEEEEEEe----CCCceEeEEEEEE-ECCEEEEEEE
Confidence 3468899999887766555555 55567899999999999998888777653 3456777777774 8999999999
Q ss_pred EEEEeec
Q 031503 148 AMAFLPS 154 (158)
Q Consensus 148 ~~~~~~~ 154 (158)
+.+-.+.
T Consensus 106 ~sF~~~e 112 (286)
T PRK10526 106 ASFQAPE 112 (286)
T ss_pred EEeccCC
Confidence 9887554
No 66
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=96.06 E-value=0.083 Score=36.82 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=46.9
Q ss_pred eechhhHHHHHHHH----hhccCC-Ce--eEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEE
Q 031503 71 LVHGMLVASMFPQI----ISSHFP-GA--VYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLV 143 (158)
Q Consensus 71 i~~G~~~~a~~~~~----~~~~~~-g~--~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v 143 (158)
-+||.-+++++... +...++ +. .....+++|++|. -..|++.+++.+-.. +.+....+.+.++|.+|++|
T Consensus 47 t~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa--~g~v~a~~~~~~e~~-~~~~~~~~~v~i~D~~G~~V 123 (132)
T PF14539_consen 47 TIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPA--RGDVTATAELTEEQI-GERGELTVPVEITDADGEVV 123 (132)
T ss_dssp SB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S-----S-EEEEEE-TCCHC-CHEEEEEEEEEEEETTC-EE
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEecc--CCcEEEEEEcCHHHh-CCCcEEEEEEEEEECCCCEE
Confidence 46666666554322 223455 32 3468999999994 446788887776211 22567889999999999999
Q ss_pred EEEEEEEE
Q 031503 144 LDGEAMAF 151 (158)
Q Consensus 144 ~~g~~~~~ 151 (158)
++++.++.
T Consensus 124 a~~~~t~~ 131 (132)
T PF14539_consen 124 AEATITWY 131 (132)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99998875
No 67
>PLN02647 acyl-CoA thioesterase
Probab=95.77 E-value=0.16 Score=42.61 Aligned_cols=84 Identities=11% Similarity=0.054 Sum_probs=54.4
Q ss_pred eechhhHHHHHHHHh---hccCCC---eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecC-CeeEEE--EEEEEEec---
Q 031503 71 LVHGMLVASMFPQII---SSHFPG---AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMK-KRYLVK--FSTKCIKN--- 138 (158)
Q Consensus 71 i~~G~~~~a~~~~~~---~~~~~g---~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~-~~~~v~--~~~~~~n~--- 138 (158)
-++|++++.++..+. +..+.+ ......++.|.+||..||.|.+++.|.-....+ ++..+. +.+.+.+.
T Consensus 307 ~iFGG~LM~~~De~A~i~A~r~a~~~~vt~svd~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~ 386 (437)
T PLN02647 307 RIFGGFLMRRAFELAFSTAYAFAGLRPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHVTRPELR 386 (437)
T ss_pred cEeHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEEEcCCCC
Confidence 678888887765432 222222 224578999999999999999999988665432 222344 44445454
Q ss_pred CCcEEEEEEEEEEeec
Q 031503 139 GELLVLDGEAMAFLPS 154 (158)
Q Consensus 139 ~g~~v~~g~~~~~~~~ 154 (158)
.++++.++..++....
T Consensus 387 ~~~~~n~~~fTfva~d 402 (437)
T PLN02647 387 SSEVSNTFYFTFTVRP 402 (437)
T ss_pred cceEEEEEEEEEEEec
Confidence 3466778888887654
No 68
>PLN02370 acyl-ACP thioesterase
Probab=95.09 E-value=0.26 Score=41.14 Aligned_cols=58 Identities=7% Similarity=-0.170 Sum_probs=46.9
Q ss_pred CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEec-CCcEEEEEEEEEEe
Q 031503 91 GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKN-GELLVLDGEAMAFL 152 (158)
Q Consensus 91 g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~-~g~~v~~g~~~~~~ 152 (158)
++++...+++|.+|+..||+|++..++.+.. +.....+.++++. +|++++.++.+.++
T Consensus 196 ~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~~----k~~~~Rdf~I~D~~~Ge~la~A~SvWV~ 254 (419)
T PLN02370 196 IWVVTRMQVLVDRYPTWGDVVQVDTWVSASG----KNGMRRDWLVRDCKTGETLTRASSVWVM 254 (419)
T ss_pred eEEEEEEEEEeCcCCCCCCEEEEEEEEeeCC----CCEEEEEEEEEECCCCeEEEEEEEEEEE
Confidence 3678899999999999999999999998753 2344456677786 79999999887665
No 69
>PLN02868 acyl-CoA thioesterase family protein
Probab=94.35 E-value=0.48 Score=39.26 Aligned_cols=79 Identities=13% Similarity=-0.039 Sum_probs=58.3
Q ss_pred ceechhhHHHHHHHHhhccCC-CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEE
Q 031503 70 RLVHGMLVASMFPQIISSHFP-GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEA 148 (158)
Q Consensus 70 ~i~~G~~~~a~~~~~~~~~~~-g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~ 148 (158)
.-++|++++|++........+ +....+..+.|.+|-.++..+..++++. + .||.+.+..+++ -|+|++++.+.+
T Consensus 158 ~~~fGG~~~aqal~Aa~~~~~~~~~~~s~~~~Fl~~~~~~~pv~~~V~~l--r--~Grs~~~r~v~~-~Q~g~~~~~~~~ 232 (413)
T PLN02868 158 GKVFGGQLVGQALAAASKTVDPLKLVHSLHAYFLLVGDINLPIIYQVERI--R--DGHNFATRRVDA-IQKGKVIFTLFA 232 (413)
T ss_pred ccccchHHHHHHHHHHHccCCCCCCceEeeeeecCCCCCCCCEEEEEEEE--c--CCCceEeeEEEE-EECCeeEEEEee
Confidence 457999999887766555554 5556788999998888877777666664 3 345677777777 489999999888
Q ss_pred EEEee
Q 031503 149 MAFLP 153 (158)
Q Consensus 149 ~~~~~ 153 (158)
++-.+
T Consensus 233 sf~~~ 237 (413)
T PLN02868 233 SFQKE 237 (413)
T ss_pred ccccC
Confidence 87654
No 70
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=94.32 E-value=0.82 Score=35.50 Aligned_cols=57 Identities=9% Similarity=0.062 Sum_probs=42.2
Q ss_pred eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEe-cCCcEEEEEEEEEEe
Q 031503 92 AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIK-NGELLVLDGEAMAFL 152 (158)
Q Consensus 92 ~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n-~~g~~v~~g~~~~~~ 152 (158)
+++....+++.++...||+|+++.++.+.. +-...-..++++ ++|++++.++...++
T Consensus 61 Wvl~r~~i~i~r~P~~~e~i~i~Tw~~~~~----~~~~~R~f~i~d~~~G~~l~~a~s~Wvl 118 (261)
T PF01643_consen 61 WVLSRYQIEIHRYPRWGEKITIETWPSGFK----RFFAYRDFEIYDAEDGELLARATSIWVL 118 (261)
T ss_dssp EEEEEEEEEESS--BTT-EEEEEEEEEEE-----SSEEEEEEEEE--TTS-EEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCCCEEEEEEEeccCC----CcEEEEEEEEEECCCCcEEEEEEEEEEE
Confidence 678899999999999999999999998864 234455667788 899999998887765
No 71
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=93.90 E-value=1.4 Score=30.34 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=59.9
Q ss_pred CCCCCcCCCHHHHhhCCCCCceechhhHHHHHHHH---hhc-c--CC-C--eeEEEEEEEEcCCcccCCEEEEEEEEEEE
Q 031503 50 HDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQI---ISS-H--FP-G--AVYVSQSLHFRLPVYIGDEVLGQLQAVNV 120 (158)
Q Consensus 50 gD~npiH~D~~~A~~~g~~~~i~~G~~~~a~~~~~---~~~-~--~~-g--~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~ 120 (158)
-..||.++|. +.--.+||+++-.+.++ +.. . .| + .++...+++|.+++...-++.+.+++...
T Consensus 29 p~~h~~~~dh--------~~dh~~gmll~Ea~RQa~~~~~h~~~~vp~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~ 100 (132)
T PF03756_consen 29 PRSHPFFFDH--------PGDHVPGMLLLEAARQAGIALAHRFYGVPLDHQFVLTSLDFTFSRFAELDVPADLTVRITCR 100 (132)
T ss_pred CCCCccccCC--------CCCccChHHHHHHHHHHHHHhhccccCCCCCceEEEEEEEEEEccccccCCCEEEEEEEEec
Confidence 4556666664 22246777776444332 221 1 23 2 35678999999999888888888888765
Q ss_pred EecC-CeeEEEEEEEEEecCCcEEEEEEEEE
Q 031503 121 REMK-KRYLVKFSTKCIKNGELLVLDGEAMA 150 (158)
Q Consensus 121 ~~~~-~~~~v~~~~~~~n~~g~~v~~g~~~~ 150 (158)
...+ +.....+++++ .|+|+++++++.++
T Consensus 101 ~~~~~~~~~~~~~v~~-~q~g~~~a~~~~~~ 130 (132)
T PF03756_consen 101 DRRGGRPRGLRFRVTV-SQGGRVVATASMTF 130 (132)
T ss_pred cccCCccceEEEEEEE-EECCEEEEEEEEEE
Confidence 4432 23445667776 48999999998875
No 72
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=93.44 E-value=0.53 Score=37.21 Aligned_cols=84 Identities=18% Similarity=0.120 Sum_probs=60.4
Q ss_pred CceechhhHHHHHHHHhhccCC-CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEE
Q 031503 69 DRLVHGMLVASMFPQIISSHFP-GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGE 147 (158)
Q Consensus 69 ~~i~~G~~~~a~~~~~~~~~~~-g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~ 147 (158)
..-+-|+.+.|..........+ +....+...-|++|.-+-..+...++.. | +|+.+.+-++.++ |+|++++...
T Consensus 31 ~~~vFGGqvvaQAL~Aa~~TV~~~r~vhSlh~yFl~pgd~~~pi~y~Ve~l--R--dG~sfs~rrV~ai-Q~g~~If~~~ 105 (289)
T COG1946 31 LRRVFGGQVVAQALVAALRTVPEDRVVHSLHSYFLRPGDPEQPIIYDVERL--R--DGRSFSTRRVDAI-QHGKLIFSAT 105 (289)
T ss_pred CccccccchHHHHHHHHHhhcCCCCCcceehhhhcCCCCcCCceEEEEEec--c--CCCceEeEEEEEE-ECCEEEEEEE
Confidence 3456677777765554445555 4555666778999999988888777654 3 3456777778774 9999999999
Q ss_pred EEEEeecCCC
Q 031503 148 AMAFLPSLAM 157 (158)
Q Consensus 148 ~~~~~~~~~~ 157 (158)
+.+-.+....
T Consensus 106 ASF~~~e~g~ 115 (289)
T COG1946 106 ASFQVPEEGF 115 (289)
T ss_pred eeccCCCCCc
Confidence 9998876543
No 73
>PLN02647 acyl-CoA thioesterase
Probab=93.34 E-value=2 Score=36.08 Aligned_cols=83 Identities=8% Similarity=-0.003 Sum_probs=52.5
Q ss_pred eechhhHHHHHHHHh---h-ccCCC---------eeE-EEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEE
Q 031503 71 LVHGMLVASMFPQII---S-SHFPG---------AVY-VSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCI 136 (158)
Q Consensus 71 i~~G~~~~a~~~~~~---~-~~~~g---------~~~-~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~ 136 (158)
-++|+.++.+++.+. + .+..+ .+. .-.++.|++|+.+||.|.+.+.|.-+-.+ .-.|.+++...
T Consensus 110 ~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~Vt~vGrS--SMEV~v~V~~~ 187 (437)
T PLN02647 110 EVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAVTWVGRS--SMEIQLEVIQP 187 (437)
T ss_pred cEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEEEEecCC--eEEEEEEEEEc
Confidence 468888887765432 2 12222 222 46899999999999999999999876321 22333444332
Q ss_pred ec-----CCcEEEEEEEEEEeecC
Q 031503 137 KN-----GELLVLDGEAMAFLPSL 155 (158)
Q Consensus 137 n~-----~g~~v~~g~~~~~~~~~ 155 (158)
+. ....++++.++++..+.
T Consensus 188 ~~~~~~~~~~~~~~a~FtfVA~D~ 211 (437)
T PLN02647 188 TKDESNTSDSVALTANFTFVARDS 211 (437)
T ss_pred cccCCCCcEEEEEEEEEEEEEEcC
Confidence 21 22468889888877553
No 74
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=92.98 E-value=2.8 Score=32.41 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=51.8
Q ss_pred CCCceechhhHHHHHHHHhhccCCCeeEEEEEEEEcCCcccC--CEEEEEEEEEEEEecCCeeEEEEEEEEEecCC---c
Q 031503 67 FDDRLVHGMLVASMFPQIISSHFPGAVYVSQSLHFRLPVYIG--DEVLGQLQAVNVREMKKRYLVKFSTKCIKNGE---L 141 (158)
Q Consensus 67 ~~~~i~~G~~~~a~~~~~~~~~~~g~~~~~~~~rf~~Pv~~G--d~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g---~ 141 (158)
.+.+|+||...+.++........++....-.+++|.+|+... +...+...+...........+.+++.-.+.++ .
T Consensus 36 ~g~~i~Pga~~le~~~~Aa~~~~~~~~~~l~~~~~~~pl~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~ 115 (295)
T PF14765_consen 36 QGQPILPGAAYLEMALEAARQLSPSSVVELRDLRFHRPLVLDEGEPRELRVELDPEEDGSGSMEWRFEIFSRNKDDSGWT 115 (295)
T ss_dssp TTEEEE-HHHHHHHHHHHHHHHTCSSEEEEEEEEE-S-EEE-TTTEEEEEEEEEEETTTTEEEEEEEEEEEEESTCCGEE
T ss_pred CCEeeehhHHHHHHHHHHHHHhhCcccceEEEeEecccEEecCCCcEEEEEEEEEccCCCCccceEEEEEEecCCCcceE
Confidence 467899999999888877666565556677899999999754 66666555554311111234455555555554 5
Q ss_pred EEEEEEEEEEe
Q 031503 142 LVLDGEAMAFL 152 (158)
Q Consensus 142 ~v~~g~~~~~~ 152 (158)
..++|...+.-
T Consensus 116 ~h~~g~v~~~~ 126 (295)
T PF14765_consen 116 LHASGQVSLDK 126 (295)
T ss_dssp EEEEEEEEEES
T ss_pred EeeeeEEEeee
Confidence 66677766543
No 75
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=92.13 E-value=0.49 Score=33.69 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=32.3
Q ss_pred eeEEEEEEEEcCCcccCCEEEEEEEEEEEEe---------cCCeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 92 AVYVSQSLHFRLPVYIGDEVLGQLQAVNVRE---------MKKRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 92 ~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~---------~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
.++...+++|++||.-+ +++.++.-+... ++++.++++.+++. ++|+.+++.+...++
T Consensus 76 IVi~~~~i~Y~~Pv~~d--~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~-~~~~~~a~f~G~yv~ 142 (144)
T PF09500_consen 76 IVIADSNIRYLKPVTGD--FTARCSLPEPEDWERFLQTLARGGRARITLEVEIY-SGGELAAEFTGRYVA 142 (144)
T ss_dssp EEEEEEEEEE-S---S----EEEEE-------S---GGGGCTS-EEEEEEEEEE-ETTEEEEEEEEEEEE
T ss_pred EEEEeCceEEcCCCCCC--cEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEE-ECCEEEEEEEEEEEE
Confidence 45678999999999765 555555541111 12367888888886 477788877766654
No 76
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=91.45 E-value=0.12 Score=39.83 Aligned_cols=116 Identities=15% Similarity=0.239 Sum_probs=75.4
Q ss_pred eeEeeCHHHHHHHHhhcCCCCCcCCCHHH---------Hh-hCCCCCceechhhHHHHHHHHhhccCCCeeEEEEEEEEc
Q 031503 33 QTRIFSSEDVVEYSKVSHDSNPLHFNSES---------AR-NAGFDDRLVHGMLVASMFPQIISSHFPGAVYVSQSLHFR 102 (158)
Q Consensus 33 ~~~~vt~~~~~~fa~~sgD~npiH~D~~~---------A~-~~g~~~~i~~G~~~~a~~~~~~~~~~~g~~~~~~~~rf~ 102 (158)
....++..+..+++++.++..|-|+-|-+ ++ ..|.++--+.|.+.- .+ .++....++-.++|+
T Consensus 16 ~~~~~t~s~~~r~~a~~~~~~~t~l~p~~H~lff~~p~~~~~lg~dghp~rg~flp----p~---~~~RRmWa~G~l~f~ 88 (273)
T COG3777 16 THHRLTASDVLRCAALFVSEAPTHLQPGWHFLFFPPPVEKADLGPDGHPARGSFLP----PL---RYRRRMWAGGELVFH 88 (273)
T ss_pred hhhhccccccceehhhcCCCcccccCcceeeeecCCchhhhcCCCCCCcCccCCCC----Cc---chhhhhhccceEEEe
Confidence 45567888999999999999888866432 11 123333223332221 00 011123356789999
Q ss_pred CCcccCCEEEEEEEEEEEEecCC----eeEEEEEEEEEecCCcEEEEEEEEEEeecCC
Q 031503 103 LPVYIGDEVLGQLQAVNVREMKK----RYLVKFSTKCIKNGELLVLDGEAMAFLPSLA 156 (158)
Q Consensus 103 ~Pv~~Gd~l~~~~~v~~~~~~~~----~~~v~~~~~~~n~~g~~v~~g~~~~~~~~~~ 156 (158)
.|+..|++.++.-+|..++++.+ ..+|++.- ++.+.|++++.-+.+++-....
T Consensus 89 ~pl~lgqe~t~~e~Iq~i~ek~g~~g~ltfvT~~h-~~~~~~~l~l~Err~ivY~n~~ 145 (273)
T COG3777 89 LPLRLGQEYTCHETIQYIEEKHGRSGELTFVTVPH-VYSSPGQLCLFERRTIVYTNAP 145 (273)
T ss_pred cceecCceeehhHHHHHHHHhcccccceeEEeccc-eeccCcceeeeeeeeEEEecCC
Confidence 99999999999998888777654 24555433 3457899999988888876553
No 77
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=90.22 E-value=3 Score=27.64 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=37.7
Q ss_pred EEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEE
Q 031503 95 VSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAF 151 (158)
Q Consensus 95 ~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~ 151 (158)
...+++|+.|....|=+..+.+.... . .++...+.++++++|++|++..-+.+
T Consensus 51 ldhsi~Fh~~~~~~~W~l~~~~~~~~--~--~gr~~~~~~l~~~~G~LvAs~~Q~~l 103 (104)
T cd03444 51 LDHAIWFHRPFRADDWLLYEQRSPRA--G--NGRGLVEGRIFTRDGELVASVAQEGL 103 (104)
T ss_pred eeEEEEEeCCCCCCceEEEEEECccc--c--CCeeEEEEEEECCCCCEEEEEEEeee
Confidence 46789999998886655555544332 2 35666778888999999998776543
No 78
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.34 E-value=1 Score=34.45 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=51.0
Q ss_pred CCCCCceechhhHHHHHHHHhhcc----CC--CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEec
Q 031503 65 AGFDDRLVHGMLVASMFPQIISSH----FP--GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKN 138 (158)
Q Consensus 65 ~g~~~~i~~G~~~~a~~~~~~~~~----~~--g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~ 138 (158)
.|+++ ++||++++.++...+... +| -......++.|..|++....+.+...+..+..+ ...+..++..+
T Consensus 138 ~gy~~-~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~~f~vi~t~~~~~~Gr----k~~~~g~l~~~ 212 (237)
T KOG4781|consen 138 TGYPG-LVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTNHFVVIRTQLDKVEGR----KCKTFGELNVQ 212 (237)
T ss_pred cCCCC-ccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccceEEEEecchhhhcCc----ccceeeEEEEe
Confidence 45555 899999999888776542 23 246788999999999999998888887765432 23445555555
Q ss_pred CCcE
Q 031503 139 GELL 142 (158)
Q Consensus 139 ~g~~ 142 (158)
.++.
T Consensus 213 ~~d~ 216 (237)
T KOG4781|consen 213 SGDD 216 (237)
T ss_pred cCCc
Confidence 5543
No 79
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=89.29 E-value=4.5 Score=28.35 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=33.7
Q ss_pred EEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEE-ecCCcEEEEEEEE
Q 031503 95 VSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCI-KNGELLVLDGEAM 149 (158)
Q Consensus 95 ~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~-n~~g~~v~~g~~~ 149 (158)
...++.|++|+..+|-|....+--. ..++|+.+. .+++ +|+|++|++..-+
T Consensus 78 lDHs~wFHrpfr~ddWlLY~~~sp~--A~~~Rgl~~--G~~f~~q~G~Lvas~~QE 129 (131)
T PF02551_consen 78 LDHSMWFHRPFRADDWLLYAIESPS--ASGGRGLVR--GRFFDTQDGELVASVVQE 129 (131)
T ss_dssp EEEEEEE-S--BTTS-EEEEEEEEE--EETTEEEEE--ECCEEECTTEEEEEEEEE
T ss_pred cceeEEEcCCCCCCCCEEEEEEcCc--cccCccccc--CceEecCCCCEEEEEecC
Confidence 4578899999999998887766543 344566654 4566 8999999986543
No 80
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=87.48 E-value=8.3 Score=30.63 Aligned_cols=81 Identities=12% Similarity=-0.022 Sum_probs=55.6
Q ss_pred CCCceechhhHHHHHHHHhhccCC-CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEE
Q 031503 67 FDDRLVHGMLVASMFPQIISSHFP-GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLD 145 (158)
Q Consensus 67 ~~~~i~~G~~~~a~~~~~~~~~~~-g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~ 145 (158)
++..-+.|+++++.+........+ +....+..+-|.+-.-+...++-.++. ++ +|+.+++-.++++ |+|+++..
T Consensus 35 ~~~~~~fGG~i~sQaLaAA~~TV~e~f~p~SlH~YFI~~gd~~~pI~Y~V~r--ir--dGr~F~~R~V~Av-Q~~k~If~ 109 (294)
T KOG3016|consen 35 IPSNHAYGGQIASQALAAASKTVEEMFIPHSLHCYFILVGDPNIPIIYDVKR--IR--DGRNFATRSVDAV-QKGKTIFT 109 (294)
T ss_pred ccCcccccceehHHHHHHHHhccccccccceeeeeeeecCCCCCceEEEeee--ec--CCceeEEEEEEEE-ECCeEEEE
Confidence 344456677776665555444454 445567788898887777777665544 33 4567887788885 99999999
Q ss_pred EEEEEEe
Q 031503 146 GEAMAFL 152 (158)
Q Consensus 146 g~~~~~~ 152 (158)
+...+-.
T Consensus 110 ~qiSF~~ 116 (294)
T KOG3016|consen 110 LQISFQQ 116 (294)
T ss_pred EEEEEcc
Confidence 9888774
No 81
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=85.02 E-value=3.8 Score=32.52 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=41.1
Q ss_pred EEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEee
Q 031503 96 SQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLP 153 (158)
Q Consensus 96 ~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~ 153 (158)
...++|++|+..+|=|....+.-+.+. +++. .+.++++++|++++...-+.++.
T Consensus 230 DHs~wFhrp~~~ddWlLy~~~sp~A~~--~rgl--~~G~lf~r~G~LiA~~~QEG~~r 283 (289)
T COG1946 230 DHSMWFHRPFRLDDWLLYAQESPSASG--GRGL--VRGQLFDRDGQLIASVVQEGLIR 283 (289)
T ss_pred cceEEEeccccCCCEEEEEeeCCcccC--Ccce--eeeEEEcCCCCEEEEEeeeEEEe
Confidence 578999999999998888877766543 3455 45677899999999866665554
No 82
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=84.64 E-value=9.6 Score=29.49 Aligned_cols=55 Identities=9% Similarity=-0.002 Sum_probs=36.1
Q ss_pred eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEE
Q 031503 92 AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAM 149 (158)
Q Consensus 92 ~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~ 149 (158)
..+...++.|.+.+..||++.+...+...... ....+...+++.+|+.++.++..
T Consensus 204 ~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~---~~~~~~h~i~~~~g~~~~~~~~~ 258 (261)
T PF01643_consen 204 YQIKSIDINYKKEIRYGDTITSYTEVEKDEEE---DGLSTLHEIRNEDGEEVARARTE 258 (261)
T ss_dssp EEEEEEEEEE-S--BTT-EEEEEEEEEEECCT---TEEEEEEEEECT-TCEEEEEEEE
T ss_pred CCcEEEEEEEccccCCCCEEEEEEEEcccccC---CceEEEEEEEcCCCceEEEEEEE
Confidence 45688999999999999999988877643322 23344455667779999988765
No 83
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=83.73 E-value=7.1 Score=30.77 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=41.4
Q ss_pred EEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEeecC
Q 031503 95 VSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLPSL 155 (158)
Q Consensus 95 ~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~~~ 155 (158)
...+++|++|+.++|=+....+.... ..+++. .+..+++++|++|++..-+.++..+
T Consensus 229 Ldhsi~Fh~~~~~d~W~L~~~~s~~a--~~gr~~--~~g~i~~~~G~LvAs~~Qegl~r~~ 285 (286)
T PRK10526 229 IDHSMWFHRPFNLNEWLLYSVESTSA--SSARGF--VRGEFYTQDGVLVASTVQEGVMRNH 285 (286)
T ss_pred eeEeEEEeCCCCCCceEEEEEECCcc--cCCceE--EEEEEECCCCCEEEEEEeeEEEEec
Confidence 35778999999988877766655432 233445 4557779999999999888777654
No 84
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=82.54 E-value=16 Score=27.74 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=38.1
Q ss_pred EEEEEEEE-cCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 94 YVSQSLHF-RLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 94 ~~~~~~rf-~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
....++.| ..|...++=+.+..+..... .++...+.+++|++|++|+.+.-+.++
T Consensus 200 tld~ti~f~~~p~~~~~Wl~~~~~~~~~~----~Gr~~~~~~l~d~~G~lvA~~~Q~~lv 255 (255)
T PF13622_consen 200 TLDHTIHFHRLPFDGDEWLLLEARSPRAG----NGRALMEGRLWDEDGRLVASSRQEALV 255 (255)
T ss_dssp EEEEEEEECSHCCTTTS-EEEEEEEEEEE----TTEEEEEEEEEETTS-EEEEEEEEEE-
T ss_pred cceeEEEEEeCCccCCceEEEEEEEeEeC----CCEEEEEEEEECCCCCEEEEEEEEeeC
Confidence 34677886 45766788888887765543 245667888899999999998877653
No 85
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=82.45 E-value=20 Score=27.54 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=40.4
Q ss_pred EEEEEEEEc-CCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEE
Q 031503 94 YVSQSLHFR-LPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAF 151 (158)
Q Consensus 94 ~~~~~~rf~-~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~ 151 (158)
++..++++. .|..+++.+.+.++.. ..+...+..++.+.|++|+++++.+-..+
T Consensus 232 ~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dv~v~d~~G~~~~~~~gl~~ 286 (295)
T PF14765_consen 232 VSIERIRIFRAPPPPGDRLYVYARLV----KSDDDTITGDVTVFDEDGRVVAELEGLTF 286 (295)
T ss_dssp EEEEEEEESSS--SSTSEEEEEEEEE----STTTTEEEEEEEEEETTSBEEEEEEEEEE
T ss_pred cEeCEEEEEeccCCCCCEEEEEEEEe----cccceEEEEEEEEECCCCCEEEEEccEEE
Confidence 457899999 5889999999999882 22235778999999999999987654443
No 86
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=80.63 E-value=10 Score=29.24 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=38.9
Q ss_pred EEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 95 VSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 95 ~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
....+.|++|+..++=+....+.... .. ++...+.+++|++|++|++..-+.++
T Consensus 217 ldhtv~fh~~~~~~~W~l~~~~s~~~--~~--Grg~~~~~l~d~~G~lvAs~~Qe~l~ 270 (271)
T TIGR00189 217 LDHSIWFHRPFRADDWLLYKCSSPSA--SG--SRGLVEGKIFTRDGVLIASTVQEGLV 270 (271)
T ss_pred eeeeEEEeCCCCCCeeEEEEEEeccc--cC--CceEEEEEEECCCCCEEEEEEeeeec
Confidence 45788999998888877766665432 22 34446678889999999998766554
No 87
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=75.21 E-value=36 Score=26.33 Aligned_cols=57 Identities=9% Similarity=-0.011 Sum_probs=44.1
Q ss_pred CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 91 GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 91 g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
-+++....+.+.+|...||.+++.-+..+.. +-.+.-++++.+ +|+...+.++..++
T Consensus 55 ~WiV~~~~i~~ir~pef~e~iti~t~~~s~~----~ffcyrrf~~~~-~gg~Lie~~a~wil 111 (250)
T COG3884 55 LWIVRRTEIDVIRPPEFGEMITIETWCSSIS----NFFCYRRFRLDG-RGGGLIEIEAFWIL 111 (250)
T ss_pred eEEEEEEEEEEeeccccCCcceEEEeecccc----ceEEEEEEEEec-CCCcEEEEEEEEEE
Confidence 3677889999999999999999999988764 346667777777 66666666665555
No 88
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=74.27 E-value=21 Score=23.08 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=30.5
Q ss_pred EEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEE
Q 031503 99 LHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMA 150 (158)
Q Consensus 99 ~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~ 150 (158)
++...|. +||+++...+|.++-. --..++.+++.|.+|+++.++..+.
T Consensus 3 I~V~~P~-pg~~V~sp~~V~G~A~---~FEgtv~~rv~D~~g~vl~e~~~~a 50 (88)
T PF10648_consen 3 IWVTAPA-PGDTVSSPVKVSGKAR---VFEGTVNIRVRDGHGEVLAEGFVTA 50 (88)
T ss_pred eEEcCCC-CcCCcCCCEEEEEEEE---EeeeEEEEEEEcCCCcEEEEeeEEe
Confidence 3444454 6777776666665421 1223567777889999997777664
No 89
>PF10862 FcoT: FcoT-like thioesterase domain; InterPro: IPR022598 Proteins in this family have a HotDog fold. This family was formerly known as DUF2662. The structure of Rv0098 from M. tuberculosis [] suggested a thioesterase function. Assays showed that this protein was a thioesterase with a preference for long chain fatty acyl groups []. The maximal Kcat was observed for palmitoyl-CoA, although longer and shorter molecules were also cleaved. In solution this protein forms a homo-hexameric complex.; PDB: 2PFC_A 3B18_A.
Probab=72.95 E-value=32 Score=24.76 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=31.1
Q ss_pred CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCe---eEEEEEEEEEecCCcEEEEEEEEEE
Q 031503 91 GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKR---YLVKFSTKCIKNGELLVLDGEAMAF 151 (158)
Q Consensus 91 g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~---~~v~~~~~~~n~~g~~v~~g~~~~~ 151 (158)
+.++...+-+|++|+-+ -..+.+.++..++...+. -.+...++..|++|-. +.|+..+.
T Consensus 95 dilI~~~~S~Frr~i~~-~~F~g~~~~~~~~~~~~~~~~l~l~t~~~F~D~~GG~-~~Ge~~lA 156 (157)
T PF10862_consen 95 DILITSFKSRFRRPINP-RHFSGELEVTDMRVRDRTWPYLFLSTECRFWDDDGGR-ASGEVELA 156 (157)
T ss_dssp HEEEEEE-EEE-S---T-TSEEEEEEEE--EEE-SSS-EEEEEEEEEEE-----E-EEEEEEEE
T ss_pred ceeEeechhhhhcccCc-ceEEEEEEEEEEEEeccCCceEEEeeEEEEEeCCCCc-cccEEEee
Confidence 45678899999999965 567788888877766554 4556667777776633 45665554
No 90
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=68.66 E-value=13 Score=30.50 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=35.2
Q ss_pred eechhhHHHHHHHHh---hccC-CC--eeEEEEEEEEcCCcccCCEEEEEEEEEEEEec
Q 031503 71 LVHGMLVASMFPQII---SSHF-PG--AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREM 123 (158)
Q Consensus 71 i~~G~~~~a~~~~~~---~~~~-~g--~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~ 123 (158)
-..|++++..+..+. +..+ .+ ..-.-..+.|.+||-.|+.|+..+.|.-...+
T Consensus 216 ~iFGGflMrka~ElA~~~A~~f~~~~p~~rsVD~i~F~~pVdvG~~L~f~s~V~yT~~k 274 (357)
T KOG2763|consen 216 TIFGGFLMRKALELAEITAKLFCKGRPATRSVDDIEFQKPVDVGCVLTFSSFVTYTDNK 274 (357)
T ss_pred ceehHHHHHHHHHHHHHHHHHHcCCCceEEEechhhccCcceeeeEEEEeeEEEEecCC
Confidence 356677765543322 1112 22 33356889999999999999999999876543
No 91
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=67.45 E-value=30 Score=22.16 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=31.5
Q ss_pred cCCcc-cCCEEEEEEEEEEEEec-CCeeEEEEEEEEEecCCcEEEEEEE
Q 031503 102 RLPVY-IGDEVLGQLQAVNVREM-KKRYLVKFSTKCIKNGELLVLDGEA 148 (158)
Q Consensus 102 ~~Pv~-~Gd~l~~~~~v~~~~~~-~~~~~v~~~~~~~n~~g~~v~~g~~ 148 (158)
-+|+| |||+|.+.+-+...... ..-....+.+++.|.+|..+.....
T Consensus 7 Dr~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~ 55 (99)
T PF01835_consen 7 DRPIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSV 55 (99)
T ss_dssp SSSEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEE
T ss_pred CccCcCCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEe
Confidence 35554 89999999998776511 0011134567888999998877665
No 92
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=67.37 E-value=30 Score=28.58 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=39.7
Q ss_pred eeEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEE
Q 031503 92 AVYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAM 149 (158)
Q Consensus 92 ~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~ 149 (158)
...-...+-|.+||..+++|++..+|.+. +|....++++++.++ ..|+.+-.+
T Consensus 375 iiIE~i~iyflk~vqid~~l~I~prIl~~----gR~~a~idvei~~~~-~ivaKAiv~ 427 (432)
T COG4109 375 IIIENITIYFLKPVQIDSVLEIYPRILEE----GRKFAKIDVEIYHDG-QIVAKAIVT 427 (432)
T ss_pred eEEEeeeeeeecceecccEEEEeeeeecc----ccccceeEEEEeeCc-chhhhheee
Confidence 34568899999999999999999999875 245667788887654 445555443
No 93
>PLN02868 acyl-CoA thioesterase family protein
Probab=65.26 E-value=21 Score=29.60 Aligned_cols=52 Identities=15% Similarity=0.039 Sum_probs=36.9
Q ss_pred EEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEE
Q 031503 96 SQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAF 151 (158)
Q Consensus 96 ~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~ 151 (158)
...++|++|+..+|=+....+.... .. ++...+.+++|++|++|++..-..+
T Consensus 361 dhsi~Fh~~~~~d~W~l~~~~s~~a--~~--gr~~~~g~l~~~~G~LvAs~~Qe~l 412 (413)
T PLN02868 361 DHSMWFHRPFRADDWLLFVIVSPAA--HN--GRGFATGHMFNRKGELVVSLTQEAL 412 (413)
T ss_pred ceeEEEecCCCCCceEEEEEECCcc--CC--CcceEEEEEECCCCCEEEEEEeeec
Confidence 4789999999888877666655432 22 3444557778999999998765543
No 94
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=54.63 E-value=52 Score=26.26 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=31.8
Q ss_pred EEEEEEcCC-cccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEE
Q 031503 96 SQSLHFRLP-VYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDG 146 (158)
Q Consensus 96 ~~~~rf~~P-v~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g 146 (158)
..++.|+++ +.++|=+.-+... .....+++++. ..+.+++|++++..
T Consensus 244 dHsiwfH~~e~~iddwilye~~s--~~a~~sr~~i~--Grlw~rdG~l~~s~ 291 (294)
T KOG3016|consen 244 DHSIWFHRPEVRADDWLLYECVS--PIATGSRGFIE--GKLWNRDGRLICST 291 (294)
T ss_pred ceeEEEecccccccceEEEEEEe--ccccCcceeEe--eeEEccCCcEEEEe
Confidence 588999997 8999855444443 33334456654 45568999998864
No 95
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=51.28 E-value=70 Score=21.20 Aligned_cols=40 Identities=8% Similarity=-0.068 Sum_probs=24.8
Q ss_pred cCCcccCCEEEEEEE--EEEEEecCCeeEEEEEEEEEecCCcEEE
Q 031503 102 RLPVYIGDEVLGQLQ--AVNVREMKKRYLVKFSTKCIKNGELLVL 144 (158)
Q Consensus 102 ~~Pv~~Gd~l~~~~~--v~~~~~~~~~~~v~~~~~~~n~~g~~v~ 144 (158)
.-|+..|+....+.. |-...+ .+.++++++++|++|+.++
T Consensus 71 ~CPl~~G~~~~~~~~~~v~~~~P---~~~~~v~~~l~d~~~~~i~ 112 (118)
T smart00737 71 KCPIEKGETVNYTNSLTVPGIFP---PGKYTVKWELTDEDGEELA 112 (118)
T ss_pred CCCCCCCeeEEEEEeeEccccCC---CeEEEEEEEEEcCCCCEEE
Confidence 468888887655544 322222 3466777788888776543
No 96
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=50.35 E-value=6.5 Score=23.97 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=23.3
Q ss_pred cccCCcEEe--eeEeeCHHHHHHHHhhcCC
Q 031503 24 ILKTGDILR--QTRIFSSEDVVEYSKVSHD 51 (158)
Q Consensus 24 dl~vG~~~~--~~~~vt~~~~~~fa~~sgD 51 (158)
++++|+.+. ...+.+.+++..|+...|.
T Consensus 22 ~l~~G~~l~V~~d~~~a~~di~~~~~~~G~ 51 (69)
T cd03420 22 KLQDGEQLEVKASDPGFARDAQAWCKSTGN 51 (69)
T ss_pred cCCCCCEEEEEECCccHHHHHHHHHHHcCC
Confidence 699999998 5668889999999987654
No 97
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=48.21 E-value=1.2e+02 Score=23.06 Aligned_cols=58 Identities=22% Similarity=0.184 Sum_probs=41.0
Q ss_pred eEEEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEee
Q 031503 93 VYVSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLP 153 (158)
Q Consensus 93 ~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~ 153 (158)
+|-++++.|.+--..--+|.......++. +.|+.++++..+ ..+|++|-+|.-++++.
T Consensus 152 iYESMs~~l~~Ld~~~~~l~l~~~~l~v~--GKRG~v~L~F~l-~~~g~~VG~G~K~lvlS 209 (218)
T PF12119_consen 152 IYESMSFELDRLDFTSPELELAGATLEVD--GKRGDVTLNFEL-KEGGEVVGTGSKRLVLS 209 (218)
T ss_pred EeEeeEEEecccCCCCCeeEeccceeEee--cceeeEEEEEEE-eECCEEEeeEEEEEEEc
Confidence 46688888888555544555555444443 336788888887 47999999998888764
No 98
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=47.53 E-value=1.1e+02 Score=23.03 Aligned_cols=55 Identities=9% Similarity=0.066 Sum_probs=43.1
Q ss_pred EEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEE
Q 031503 95 VSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMA 150 (158)
Q Consensus 95 ~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~ 150 (158)
.+.++.|..+=|-|++|.+...+...... .--.|++++.+++.+|+++.+-+.++
T Consensus 98 sGVdV~l~~~~y~~~~L~l~~~ltnqSsq-sVv~Vel~v~l~d~~G~~L~~e~v~v 152 (199)
T PF11355_consen 98 SGVDVSLGASQYEDGQLGLPFSLTNQSSQ-SVVLVELEVTLFDDSGQLLKTETVKV 152 (199)
T ss_pred CCeeEEEeccceeCCeEEEEEEEecCCCc-eEEEEEEEEEEEcCCCCEeeEeeeeh
Confidence 35799999999999999999988764321 12456888889999999998877664
No 99
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=46.65 E-value=54 Score=25.38 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.7
Q ss_pred EEEEEEEcCCcccCCEEEEEEEEEEE
Q 031503 95 VSQSLHFRLPVYIGDEVLGQLQAVNV 120 (158)
Q Consensus 95 ~~~~~rf~~Pv~~Gd~l~~~~~v~~~ 120 (158)
....++|.+||.+|+++++..++...
T Consensus 194 ~r~~l~y~keva~G~~iti~~e~~~~ 219 (250)
T COG3884 194 LRLTLEYVKEVAPGEKITIVYEVHPL 219 (250)
T ss_pred ceeEEEEEcccCCCCeEEEEEEEccc
Confidence 46799999999999999999888744
No 100
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=45.59 E-value=74 Score=33.10 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=39.1
Q ss_pred EEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEE
Q 031503 95 VSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLD 145 (158)
Q Consensus 95 ~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~ 145 (158)
...+++..+|+.+|+..++..+|++... ..++.++.++|++|++++.
T Consensus 2519 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~d~~~~~~~g~~~~~ 2565 (2582)
T TIGR02813 2519 SIGEFVSYRPVSLGEKFYLKLDVVKSSG----RSLVANIELYHQDGRLSSE 2565 (2582)
T ss_pred ccceEEEecCCCCCCceEEEEEEEeccC----CeEEEEEEEECCCCcEEEE
Confidence 3468899999999999999999988642 3577889999999998765
No 101
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=43.24 E-value=37 Score=24.05 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=20.9
Q ss_pred eEEEEEEEEEecCCcEEEEEEEEE
Q 031503 127 YLVKFSTKCIKNGELLVLDGEAMA 150 (158)
Q Consensus 127 ~~v~~~~~~~n~~g~~v~~g~~~~ 150 (158)
..++++.+..+++|+++.+|+.++
T Consensus 86 PRI~l~Y~L~d~~G~vi~~g~e~L 109 (141)
T PF11454_consen 86 PRIELSYTLTDADGKVIKQGEEKL 109 (141)
T ss_pred CcEEEEEEEECCCCcEEEecceEE
Confidence 468899999999999999998776
No 102
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=43.08 E-value=1e+02 Score=20.68 Aligned_cols=41 Identities=7% Similarity=-0.040 Sum_probs=27.7
Q ss_pred CCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEE
Q 031503 103 LPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVL 144 (158)
Q Consensus 103 ~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~ 144 (158)
-|+.+|+..+.+.++. +...-..+.++++.+++|++|+.++
T Consensus 86 CPi~~G~~~~~~~~~~-i~~~~p~~~~~i~~~l~d~~~~~i~ 126 (134)
T PF02221_consen 86 CPIKAGEYYTYTYTIP-IPKIYPPGKYTIQWKLTDQDGEEIA 126 (134)
T ss_dssp STBTTTEEEEEEEEEE-ESTTSSSEEEEEEEEEEETTTEEEE
T ss_pred CccCCCcEEEEEEEEE-cccceeeEEEEEEEEEEeCCCCEEE
Confidence 3899998877766663 2211124677888889999876554
No 103
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=41.71 E-value=11 Score=23.89 Aligned_cols=28 Identities=11% Similarity=0.284 Sum_probs=23.1
Q ss_pred cccCCcEEe--eeEeeCHHHHHHHHhhcCC
Q 031503 24 ILKTGDILR--QTRIFSSEDVVEYSKVSHD 51 (158)
Q Consensus 24 dl~vG~~~~--~~~~vt~~~~~~fa~~sgD 51 (158)
.+++|+.+. ...+-+.+++..|++..|.
T Consensus 32 ~l~~G~~l~V~~dd~~~~~di~~~~~~~G~ 61 (81)
T PRK00299 32 NMQPGETLLIIADDPATTRDIPSFCRFMDH 61 (81)
T ss_pred cCCCCCEEEEEeCCccHHHHHHHHHHHcCC
Confidence 699999998 4668889999999986654
No 104
>PLN02370 acyl-ACP thioesterase
Probab=41.63 E-value=2.1e+02 Score=24.06 Aligned_cols=62 Identities=6% Similarity=-0.129 Sum_probs=39.7
Q ss_pred CeeEEEEEEEEcCCcccCCEEEEEEEEEEEEec--CCeeEEEEEEEEEecCCcEEEEEEEEEEe
Q 031503 91 GAVYVSQSLHFRLPVYIGDEVLGQLQAVNVREM--KKRYLVKFSTKCIKNGELLVLDGEAMAFL 152 (158)
Q Consensus 91 g~~~~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~--~~~~~v~~~~~~~n~~g~~v~~g~~~~~~ 152 (158)
+..+...++.|.+.+..||.|.+...+.+-... ...+.+.+.....+++|+.++.++....-
T Consensus 339 ~~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~~~~~~~h~~~~~dG~e~a~a~t~Wr~ 402 (419)
T PLN02370 339 SHELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTAGDVECQHLLRLEDGAEIVRGRTEWRP 402 (419)
T ss_pred cceEEEEEEEEcccCCCCCEEEEEEeecccccccccCCCcceEEEEEEcCCCeEEEEEEEEEEE
Confidence 345678999999999999999977664321110 01111123333446789999998877553
No 105
>PHA01790 streptodornase
Probab=41.49 E-value=73 Score=25.48 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=31.3
Q ss_pred EEEcC-CcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEec-CC
Q 031503 99 LHFRL-PVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKN-GE 140 (158)
Q Consensus 99 ~rf~~-Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~-~g 140 (158)
++|.. |||-|+.|..++...+....+ +.+.+.+.++|. .|
T Consensus 234 V~Y~VTPIfrGnELvaRGV~meA~SsD--gtInFNVyIfNVQpG 275 (326)
T PHA01790 234 VFCSAIPEYQGTELLARSVLVSALSSD--GVINETVRVFNTADG 275 (326)
T ss_pred EEEEEEeeEeCCcccceeEEEEEEEcC--CceeEEEEEEECCCC
Confidence 55654 999999999998888776653 368899999994 44
No 106
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.98 E-value=12 Score=22.70 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=23.1
Q ss_pred cccCCcEEe--eeEeeCHHHHHHHHhhcCC
Q 031503 24 ILKTGDILR--QTRIFSSEDVVEYSKVSHD 51 (158)
Q Consensus 24 dl~vG~~~~--~~~~vt~~~~~~fa~~sgD 51 (158)
.++.|+.+. ...+.+.+++..|++..|.
T Consensus 22 ~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~ 51 (69)
T cd03422 22 SLKPGEILEVISDCPQSINNIPIDARNHGY 51 (69)
T ss_pred cCCCCCEEEEEecCchHHHHHHHHHHHcCC
Confidence 699999988 5778899999999986553
No 107
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.30 E-value=13 Score=22.57 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=22.8
Q ss_pred cccCCcEEe--eeEeeCHHHHHHHHhhcCC
Q 031503 24 ILKTGDILR--QTRIFSSEDVVEYSKVSHD 51 (158)
Q Consensus 24 dl~vG~~~~--~~~~vt~~~~~~fa~~sgD 51 (158)
.++.|+.+. ...+.+.+++..|+...|.
T Consensus 22 ~l~~G~~l~V~~dd~~s~~di~~~~~~~g~ 51 (69)
T cd03423 22 KMKPGDTLLVLATDPSTTRDIPKFCTFLGH 51 (69)
T ss_pred cCCCCCEEEEEeCCCchHHHHHHHHHHcCC
Confidence 699999988 4667889999999886654
No 108
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=37.82 E-value=68 Score=21.07 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=18.0
Q ss_pred CCcccCCEEEEEEEEEEEEecCC
Q 031503 103 LPVYIGDEVLGQLQAVNVREMKK 125 (158)
Q Consensus 103 ~Pv~~Gd~l~~~~~v~~~~~~~~ 125 (158)
.+-..|.++++.++|..+|..++
T Consensus 7 ~~~~~g~~V~v~Gwv~~~R~~g~ 29 (108)
T cd04316 7 TPELDGEEVTVAGWVHEIRDLGG 29 (108)
T ss_pred chhhCCCEEEEEEEEEeeeccCC
Confidence 34557899999999999887653
No 109
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=36.53 E-value=1.3e+02 Score=19.98 Aligned_cols=49 Identities=8% Similarity=-0.057 Sum_probs=27.6
Q ss_pred cccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEee
Q 031503 105 VYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLP 153 (158)
Q Consensus 105 v~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~ 153 (158)
|.+|+.......|..-...-..+.-.++..+.++++....+-+.+++.|
T Consensus 70 v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~~~~~~~~~~~s~F~~P 118 (118)
T PF11614_consen 70 VPPGETREVPVFVTAPPDALKSGSTPITFTVTDDDGGEIITYKSTFIGP 118 (118)
T ss_dssp E-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEEGGGTEEEEEEEEEE--
T ss_pred ECCCCEEEEEEEEEECHHHccCCCeeEEEEEEECCCCEEEEEEEEEEcC
Confidence 6678887777777654333111222455555567888888888887765
No 110
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=36.34 E-value=1.5e+02 Score=20.70 Aligned_cols=45 Identities=9% Similarity=-0.055 Sum_probs=27.0
Q ss_pred CCcccCCEEEEE--EEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEE
Q 031503 103 LPVYIGDEVLGQ--LQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAM 149 (158)
Q Consensus 103 ~Pv~~Gd~l~~~--~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~ 149 (158)
-|+..|++++-. ...-..+ -..+.++++.+..|++++.++=.++|
T Consensus 83 CP~~kGet~~Y~~p~slpi~~--yP~~~y~V~weL~d~~~~~l~Cf~~t 129 (130)
T cd00915 83 CGALKGETVYYVGPFSFKGIL--IPQGQYRCVAELIVENRETVACANFT 129 (130)
T ss_pred CCccCCceEEEeeeecccccc--cCCccEEEEEEEECCCCCEEEEEEEE
Confidence 377888877766 3333222 11345667777788888766555544
No 111
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=35.29 E-value=1.6e+02 Score=20.89 Aligned_cols=50 Identities=10% Similarity=-0.134 Sum_probs=32.8
Q ss_pred cCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEEEEEEEEee
Q 031503 102 RLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLDGEAMAFLP 153 (158)
Q Consensus 102 ~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~~~~ 153 (158)
--||.+||-+.....+..-..- -+...+..++.|.+|+...=-++.+.++
T Consensus 96 sCPVepG~f~~~hsq~LPg~tP--PG~Y~lkm~~~d~~~~~LTCisfsf~i~ 145 (153)
T KOG4680|consen 96 SCPVEPGDFLVAHSQVLPGYTP--PGSYVLKMTAYDAKGKELTCISFSFDIG 145 (153)
T ss_pred cCCcCcCceeeeeeEeccCcCC--CceEEEEEEeecCCCCEEEEEEEEEEee
Confidence 5699999988777766643322 3466788899999887644434444333
No 112
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=34.98 E-value=1.6e+02 Score=20.63 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=31.0
Q ss_pred EEEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCC
Q 031503 95 VSQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGE 140 (158)
Q Consensus 95 ~~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g 140 (158)
...++.|..||.+|+++++...-.. .-...++..+.+.+.-.+.
T Consensus 89 ~~i~I~f~~PV~pG~tv~V~l~~v~--NP~~~G~Y~f~v~a~p~G~ 132 (146)
T PF10989_consen 89 RTITITFDEPVPPGTTVTVVLSPVR--NPRSGGTYQFNVTAFPPGD 132 (146)
T ss_pred CEEEEEeCCCCCCCCEEEEEEEeee--CCCCCCeEEEEEEEECCCC
Confidence 4579999999999999998875432 2222467778887764443
No 113
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=34.63 E-value=1.5e+02 Score=20.13 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=22.0
Q ss_pred cCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcE
Q 031503 102 RLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELL 142 (158)
Q Consensus 102 ~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~ 142 (158)
.-|+..|++++.+..+- +...-....++++.++.|++++.
T Consensus 76 ~CPl~~G~~~~y~~~~~-v~~~~P~i~~~v~~~L~d~~~~~ 115 (123)
T cd00916 76 SCPLSAGEDVTYTLSLP-VLAPYPGISVTVEWELTDDDGQV 115 (123)
T ss_pred CCCCcCCcEEEEEEeee-ccccCCCeEEEEEEEEEcCCCCE
Confidence 34788888777666432 21111123456666777775554
No 114
>PF14230 DUF4333: Domain of unknown function (DUF4333)
Probab=31.07 E-value=1.3e+02 Score=18.77 Aligned_cols=37 Identities=8% Similarity=-0.036 Sum_probs=23.5
Q ss_pred EEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCC
Q 031503 97 QSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGE 140 (158)
Q Consensus 97 ~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g 140 (158)
.++-=-.|+.+|.+.++..++.+. ...+.+++.+.+|
T Consensus 44 V~Cp~~~~~~~G~tf~C~vt~~G~-------~~~v~Vtvt~~dG 80 (80)
T PF14230_consen 44 VTCPGDLEVEVGATFTCTVTVDGE-------TQTVTVTVTDVDG 80 (80)
T ss_pred eECCCCCcccCCceEEEEEEeCCE-------EEEEEEEEECCCC
Confidence 344444588899999999775432 3445566666655
No 115
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=30.53 E-value=1.8e+02 Score=19.82 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=23.3
Q ss_pred cCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCc
Q 031503 102 RLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGEL 141 (158)
Q Consensus 102 ~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~ 141 (158)
.-|+..|++.+.+...- +...-..-.++++.+..+++|.
T Consensus 72 ~CPl~~G~~~~y~~~~~-V~~~~P~v~~~V~~~L~d~~g~ 110 (120)
T cd00918 72 KCPIKKGQHYDIKYTWN-VPAILPKIKAVVKAVLIGDHGV 110 (120)
T ss_pred eCCCcCCcEEEEEEeee-ccccCCCeEEEEEEEEEcCCCc
Confidence 56888888877665443 2111112345667777777774
No 116
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=30.21 E-value=84 Score=21.48 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=18.4
Q ss_pred cCCcccCCEEEEEEEEEEEEecCC
Q 031503 102 RLPVYIGDEVLGQLQAVNVREMKK 125 (158)
Q Consensus 102 ~~Pv~~Gd~l~~~~~v~~~~~~~~ 125 (158)
..+-+.|+++++.++|..+|..++
T Consensus 8 ~~~~~~g~~V~i~Gwv~~~R~~gk 31 (135)
T cd04317 8 LRESHVGQEVTLCGWVQRRRDHGG 31 (135)
T ss_pred CChhHCCCEEEEEEeEehhcccCC
Confidence 345667999999999998887643
No 117
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=29.87 E-value=1.2e+02 Score=18.21 Aligned_cols=21 Identities=0% Similarity=-0.007 Sum_probs=17.0
Q ss_pred EEEEEEEecCCcEEEEEEEEE
Q 031503 130 KFSTKCIKNGELLVLDGEAMA 150 (158)
Q Consensus 130 ~~~~~~~n~~g~~v~~g~~~~ 150 (158)
..++++.+++|+++..-++++
T Consensus 45 ~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 45 DWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred CEEEEEEcCCCCEEEEEEEEE
Confidence 477888899999988877765
No 118
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=27.50 E-value=10 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=21.9
Q ss_pred cccCCcEEe--eeEeeCHHHHHHHHhhcCC
Q 031503 24 ILKTGDILR--QTRIFSSEDVVEYSKVSHD 51 (158)
Q Consensus 24 dl~vG~~~~--~~~~vt~~~~~~fa~~sgD 51 (158)
.++.|+.+. ...+-+.+++..|+...|.
T Consensus 23 ~l~~G~~l~v~~d~~~~~~di~~~~~~~g~ 52 (70)
T PF01206_consen 23 ELPPGEVLEVLVDDPAAVEDIPRWCEENGY 52 (70)
T ss_dssp TSGTT-EEEEEESSTTHHHHHHHHHHHHTE
T ss_pred hcCCCCEEEEEECCccHHHHHHHHHHHCCC
Confidence 699999998 5667778999999987664
No 119
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.37 E-value=1.5e+02 Score=22.79 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=30.0
Q ss_pred EEEEEEcCCcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEE
Q 031503 96 SQSLHFRLPVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLD 145 (158)
Q Consensus 96 ~~~~rf~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~ 145 (158)
+..=-|..|+..|.++.++.+|+.= .+-..+...+.|..|+++..
T Consensus 43 Gk~eCf~Q~v~~~~tle~eyQVi~G-----~GDl~i~Ftl~~P~G~~lv~ 87 (236)
T KOG3287|consen 43 GKTECFYQPVPQGATLEVEYQVIDG-----AGDLDIDFTLLNPAGEVLVS 87 (236)
T ss_pred CCceeeeeeccCCeEEEEEEEEEec-----CCccceeeEEeCCCccEEee
Confidence 3444588999999999999988752 12234455666777765543
No 120
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=26.83 E-value=2e+02 Score=19.29 Aligned_cols=41 Identities=10% Similarity=-0.014 Sum_probs=22.7
Q ss_pred cCCcccCCEEEEEEEEEEEEe-cCCeeEEEEEEEEEecCCcEE
Q 031503 102 RLPVYIGDEVLGQLQAVNVRE-MKKRYLVKFSTKCIKNGELLV 143 (158)
Q Consensus 102 ~~Pv~~Gd~l~~~~~v~~~~~-~~~~~~v~~~~~~~n~~g~~v 143 (158)
.-|+.+|+.++....+. +.. .--...+.+.....+++|+.+
T Consensus 79 ~CPl~~G~~~~~~~~~~-v~~~~~P~~~~~v~~~l~~~~~~~v 120 (127)
T cd00912 79 FCPLRKGQQYSYAKTVN-VPEFTIPTIEYQVVLEDVTDKGEVL 120 (127)
T ss_pred cCCcCCCCEEEEEEEEe-cCcccCCCeeEEEEEEEEcCCCCEE
Confidence 46888888777666543 311 111233455556667666643
No 121
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=26.82 E-value=2.1e+02 Score=22.58 Aligned_cols=20 Identities=20% Similarity=-0.059 Sum_probs=15.4
Q ss_pred EEEEEEcCCcccCCEEEEEE
Q 031503 96 SQSLHFRLPVYIGDEVLGQL 115 (158)
Q Consensus 96 ~~~~rf~~Pv~~Gd~l~~~~ 115 (158)
+.-+-+.+|..+||.+.+..
T Consensus 121 Gi~i~~~rpf~vGD~I~i~~ 140 (286)
T PRK10334 121 GVLLVMFRPFRAGEYVDLGG 140 (286)
T ss_pred HHHHHhcCCCCCCCEEEECC
Confidence 34556779999999998753
No 122
>PHA00098 hypothetical protein
Probab=23.93 E-value=75 Score=21.18 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=17.5
Q ss_pred eeCHHHHHHHHh-hcCC----CCCcCCCHHHHhh
Q 031503 36 IFSSEDVVEYSK-VSHD----SNPLHFNSESARN 64 (158)
Q Consensus 36 ~vt~~~~~~fa~-~sgD----~npiH~D~~~A~~ 64 (158)
++..+..++|.. .+|| ..|+|.|+.||+.
T Consensus 30 ~Vn~Ekf~r~~lG~~~dvp~~~qpL~Id~~YA~~ 63 (112)
T PHA00098 30 TVNVEKFAQYGLGLNTDIPFNKQPLRIEPTYAKR 63 (112)
T ss_pred hhhHHHHHHhccccCCCcCcCCCceEeCHHHHHH
Confidence 444444444432 3344 4689999999975
No 123
>PRK11281 hypothetical protein; Provisional
Probab=23.36 E-value=1.9e+02 Score=27.66 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=16.6
Q ss_pred EEEEEEEcCCcccCCEEEEEE
Q 031503 95 VSQSLHFRLPVYIGDEVLGQL 115 (158)
Q Consensus 95 ~~~~~rf~~Pv~~Gd~l~~~~ 115 (158)
++.-+-|-+|+.+||.+++..
T Consensus 929 SGiiIl~eRPfrIGD~I~I~~ 949 (1113)
T PRK11281 929 SGLIILFERPVRIGDTVTIGT 949 (1113)
T ss_pred HHHHHHHcCCcCCCCEEEECC
Confidence 345667899999999998753
No 124
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=22.40 E-value=2.4e+02 Score=18.63 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=27.4
Q ss_pred CcccCCEEEEEEEEEEEEecCCeeEEEEEEEEEecCCcEEEE
Q 031503 104 PVYIGDEVLGQLQAVNVREMKKRYLVKFSTKCIKNGELLVLD 145 (158)
Q Consensus 104 Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~ 145 (158)
.+..||+++++.++...+. -..+.+.+.+.|.+|..++.
T Consensus 30 ~~~~ge~~~i~i~~~~~~~---i~~~~~~~~i~~~~g~~v~~ 68 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNED---IDDPVFGFAIRDSDGQRVFG 68 (142)
T ss_dssp SEETTSEEEEEEEEEESS----EEEEEEEEEEEETT--EEEE
T ss_pred EEeCCCEEEEEEEEEECCC---CCccEEEEEEEcCCCCEEEE
Confidence 6789999999998876322 23466788888999977775
No 125
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.01 E-value=2.3e+02 Score=27.15 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=16.2
Q ss_pred EEEEEEEcCCcccCCEEEEEE
Q 031503 95 VSQSLHFRLPVYIGDEVLGQL 115 (158)
Q Consensus 95 ~~~~~rf~~Pv~~Gd~l~~~~ 115 (158)
++.-+-|-+|+.+||.+++..
T Consensus 926 SGIiIL~erPfrVGD~I~I~~ 946 (1109)
T PRK10929 926 SGLIILFEKPIRIGDTVTIRD 946 (1109)
T ss_pred HHHHHHHhCCCCCCCEEEECC
Confidence 345567889999999998653
No 126
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.31 E-value=1.1e+02 Score=19.07 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.9
Q ss_pred cccCCcEEe--eeEeeCHHHHHHHHhhcC
Q 031503 24 ILKTGDILR--QTRIFSSEDVVEYSKVSH 50 (158)
Q Consensus 24 dl~vG~~~~--~~~~vt~~~~~~fa~~sg 50 (158)
.+++|+.+. ...+.+..|+..|+...+
T Consensus 28 ~m~~Ge~LeV~~ddp~~~~dIp~~~~~~~ 56 (78)
T COG0425 28 KLKPGEILEVIADDPAAKEDIPAWAKKEG 56 (78)
T ss_pred cCCCCCEEEEEecCcchHHHHHHHHHHcC
Confidence 699999999 577888899999999544
No 127
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.08 E-value=1.5e+02 Score=21.35 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=15.3
Q ss_pred EEEEecCCcEEEEEEEEEE
Q 031503 133 TKCIKNGELLVLDGEAMAF 151 (158)
Q Consensus 133 ~~~~n~~g~~v~~g~~~~~ 151 (158)
+-++|.+|++++.|++.+-
T Consensus 117 vlVVne~d~LlAvGra~ls 135 (155)
T COG1370 117 VLVVNEDDELLAVGRALLS 135 (155)
T ss_pred EEEECCCCcEEEeeeEeec
Confidence 4567999999999998753
Done!