BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031504
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UXF|A Chain A, Structure Of The Fimbrial Protein Fimp From Actonomyces
           Oris
          Length = 488

 Score = 28.9 bits (63), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 57  PVEDV--AAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKL 114
           PV DV     ++      Y   KT   LKG +   G  +  +VQK  TT  + L +++  
Sbjct: 73  PVSDVEFTITKLNVDLTTYDGWKTLADLKGDVVKAGALKSTTVQK-ITTGANGLASFTDA 131

Query: 115 QAEIRARRLCMVKEGRLRQKKL--ENQLKLDAKLNSLEVSTWTYHL 158
           Q E+ A    +V E R   K +  E+ +      N  + + W Y++
Sbjct: 132 QTEVGAY---LVSETRTPDKVIPAEDFVVTLPMTNPQDTAKWNYNV 174


>pdb|2QT3|A Chain A, Crystal Structure Of N-Isopropylammelide
           Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
           Adp Complexed With Zn
 pdb|2QT3|B Chain B, Crystal Structure Of N-Isopropylammelide
           Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
           Adp Complexed With Zn
          Length = 403

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 87  RLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI-RARRLCMVKEGRL 131
           R+ G+ + + ++      L  L++ S   A I +A+RLC++K GR+
Sbjct: 349 RVLGIEKNYGIEVGKKADLVVLNSLSPQWAIIDQAKRLCVIKNGRI 394


>pdb|1QSJ|A Chain A, N-Terminally Truncated C3dg Fragment
 pdb|1QSJ|B Chain B, N-Terminally Truncated C3dg Fragment
 pdb|1QSJ|C Chain C, N-Terminally Truncated C3dg Fragment
 pdb|1QSJ|D Chain D, N-Terminally Truncated C3dg Fragment
          Length = 277

 Score = 26.2 bits (56), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 101 ATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTW 154
           A   L     W K   E R   L ++K+G  +Q   +  +   A  N+   STW
Sbjct: 15  AVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTW 68


>pdb|1QQF|A Chain A, N-Terminally Truncated C3d,G Fragment Of The Complement
           System
          Length = 277

 Score = 26.2 bits (56), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 101 ATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEVSTW 154
           A   L     W K   E R   L ++K+G  +Q   +  +   A  N+   STW
Sbjct: 15  AVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTW 68


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.132    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,249,879
Number of Sequences: 62578
Number of extensions: 88564
Number of successful extensions: 260
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 6
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)