Query 031504
Match_columns 158
No_of_seqs 167 out of 590
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 15:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 98.3 7.8E-07 1.7E-11 48.6 3.0 21 60-80 1-21 (21)
2 KOG0160 Myosin class V heavy c 98.0 3E-05 6.5E-10 75.5 9.0 61 58-122 671-732 (862)
3 smart00015 IQ Short calmodulin 97.9 1.1E-05 2.4E-10 46.0 2.7 22 59-80 2-23 (26)
4 KOG0160 Myosin class V heavy c 97.6 0.00025 5.4E-09 69.3 9.1 66 57-125 693-758 (862)
5 KOG0520 Uncharacterized conser 97.2 0.00031 6.7E-09 69.2 3.9 71 58-128 808-886 (975)
6 PTZ00014 myosin-A; Provisional 97.1 0.00071 1.5E-08 65.8 4.8 41 61-101 778-819 (821)
7 COG5022 Myosin heavy chain [Cy 96.4 0.015 3.3E-07 59.5 8.8 65 58-123 743-808 (1463)
8 PF00612 IQ: IQ calmodulin-bin 96.3 0.0036 7.8E-08 33.9 2.2 19 83-101 2-20 (21)
9 KOG2128 Ras GTPase-activating 96.2 0.012 2.5E-07 60.1 6.8 72 54-125 558-639 (1401)
10 KOG0164 Myosin class I heavy c 96.2 0.013 2.8E-07 57.1 6.6 26 59-84 695-720 (1001)
11 smart00015 IQ Short calmodulin 94.8 0.023 5.1E-07 32.0 2.1 19 83-101 4-22 (26)
12 PTZ00014 myosin-A; Provisional 94.3 0.11 2.5E-06 50.8 6.6 39 84-125 779-817 (821)
13 KOG0161 Myosin class II heavy 93.0 0.28 6E-06 52.2 7.2 37 85-121 776-812 (1930)
14 KOG4427 E3 ubiquitin protein l 89.9 0.28 6E-06 48.5 3.2 24 57-80 27-50 (1096)
15 KOG0942 E3 ubiquitin protein l 87.3 0.4 8.7E-06 47.8 2.4 26 57-82 26-51 (1001)
16 KOG2128 Ras GTPase-activating 85.4 1.5 3.3E-05 45.4 5.4 59 65-126 540-610 (1401)
17 KOG0162 Myosin class I heavy c 83.6 0.91 2E-05 45.0 2.8 38 61-101 697-735 (1106)
18 KOG0520 Uncharacterized conser 82.0 2.4 5.3E-05 42.6 5.1 64 61-124 834-930 (975)
19 KOG0377 Protein serine/threoni 81.3 2.2 4.8E-05 40.2 4.3 35 57-91 14-48 (631)
20 KOG0161 Myosin class II heavy 79.0 11 0.00025 40.6 9.0 42 60-101 773-818 (1930)
21 PF08763 Ca_chan_IQ: Voltage g 68.5 5.7 0.00012 24.7 2.4 19 61-79 10-28 (35)
22 KOG0163 Myosin class VI heavy 65.7 14 0.0003 37.3 5.6 33 58-90 811-844 (1259)
23 PF15157 IQ-like: IQ-like 63.4 5.2 0.00011 29.8 1.8 21 60-80 47-67 (97)
24 COG5022 Myosin heavy chain [Cy 60.8 35 0.00076 36.1 7.7 63 60-123 793-857 (1463)
25 COG5261 IQG1 Protein involved 46.7 31 0.00068 35.0 4.6 40 84-123 408-464 (1054)
26 KOG4427 E3 ubiquitin protein l 42.9 59 0.0013 32.9 5.8 24 83-106 31-54 (1096)
27 KOG0164 Myosin class I heavy c 41.7 48 0.001 33.3 4.9 20 85-104 699-718 (1001)
28 KOG0942 E3 ubiquitin protein l 40.8 32 0.00069 35.0 3.7 26 81-106 28-53 (1001)
29 KOG0165 Microtubule-associated 36.8 81 0.0018 31.9 5.7 24 57-80 940-963 (1023)
30 KOG0163 Myosin class VI heavy 34.7 40 0.00086 34.2 3.2 22 84-105 815-836 (1259)
31 PF03832 WSK: WSK motif; Inte 34.7 22 0.00047 21.5 1.0 19 3-21 5-25 (31)
32 KOG1419 Voltage-gated K+ chann 34.7 20 0.00044 34.6 1.3 21 57-77 337-357 (654)
33 PF06936 Selenoprotein_S: Sele 30.2 1.1E+02 0.0024 25.3 4.7 22 107-128 74-95 (190)
34 COG5374 Uncharacterized conser 29.2 3.1E+02 0.0068 22.9 7.2 77 62-150 87-180 (192)
35 KOG3684 Ca2+-activated K+ chan 27.4 5.5E+02 0.012 24.5 9.4 27 54-80 358-384 (489)
36 KOG4229 Myosin VII, myosin IXB 24.3 89 0.0019 32.2 3.8 81 56-138 962-1047(1062)
37 PF04849 HAP1_N: HAP1 N-termin 21.1 4.2E+02 0.0092 23.6 7.0 48 103-150 235-282 (306)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=98.29 E-value=7.8e-07 Score=48.57 Aligned_cols=21 Identities=48% Similarity=0.680 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhchHHHHHHH
Q 031504 60 DVAAIRIQTAFRAYKARKTFR 80 (158)
Q Consensus 60 ~~AAi~IQsa~RGylaRr~~~ 80 (158)
+.||+.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 469999999999999999884
No 2
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.98 E-value=3e-05 Score=75.53 Aligned_cols=61 Identities=28% Similarity=0.292 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhhchHHHHHHHhhh-hhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 031504 58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARR 122 (158)
Q Consensus 58 re~~AAi~IQsa~RGylaRr~~~~lk-~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~ 122 (158)
....+++.||+.+|||+.|+.|..++ +++.||+++||+++|+.. . ...|++.||+.+|++.
T Consensus 671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~ 732 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYL 732 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHH
Confidence 34567888999999999999999666 788999999999999811 1 2334445555544443
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.90 E-value=1.1e-05 Score=45.95 Aligned_cols=22 Identities=50% Similarity=0.662 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhchHHHHHHH
Q 031504 59 EDVAAIRIQTAFRAYKARKTFR 80 (158)
Q Consensus 59 e~~AAi~IQsa~RGylaRr~~~ 80 (158)
.+.||+.||+.||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4689999999999999999984
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.64 E-value=0.00025 Score=69.29 Aligned_cols=66 Identities=20% Similarity=0.092 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHhhchHHHHHHHhhhhhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 031504 57 PVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (158)
Q Consensus 57 ~re~~AAi~IQsa~RGylaRr~~~~lk~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm 125 (158)
+....+++.||+.+||+++|+....-.+++.+|..+|+++.|++|.... .+++.||+.+|+..+|-
T Consensus 693 ~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~~---~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 693 LQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRALI---PASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence 5677899999999999999984444457899999999999999995444 89999999999999887
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.20 E-value=0.00031 Score=69.21 Aligned_cols=71 Identities=25% Similarity=0.359 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHhhchHHHHHHHhhh-hhHHHHhhhhcHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHhhhHH
Q 031504 58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTT-------LSYLHTWSKLQAEIRARRLCMVKE 128 (158)
Q Consensus 58 re~~AAi~IQsa~RGylaRr~~~~lk-~ivrLQal~RG~lvRkq~~~~-------lr~~~A~vkIQs~iRgr~~Rm~~e 128 (158)
....||..||.-||||+.|+.|..++ -+|++|+.+||+.+|++|... -.-+.+|=.+|.-+||+..+-..|
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e 886 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE 886 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence 34568999999999999999999766 699999999999999999721 122678889999999998776543
No 6
>PTZ00014 myosin-A; Provisional
Probab=97.05 E-value=0.00071 Score=65.85 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhchHHHHHHHhh-hhhHHHHhhhhcHHHHHHH
Q 031504 61 VAAIRIQTAFRAYKARKTFRRL-KGTIRLQGVSQRHSVQKQA 101 (158)
Q Consensus 61 ~AAi~IQsa~RGylaRr~~~~l-k~ivrLQal~RG~lvRkq~ 101 (158)
..++.||++||||++|+.|..+ .+++.||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3678899999999999998854 4788889999998888753
No 7
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=96.39 E-value=0.015 Score=59.55 Aligned_cols=65 Identities=23% Similarity=0.223 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhhchHHHHHHH-hhhhhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 031504 58 VEDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRL 123 (158)
Q Consensus 58 re~~AAi~IQsa~RGylaRr~~~-~lk~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~ 123 (158)
.-...++.||++|||+..|++|. .++.+..+|...+|..+++.+...+ -..+.+++|..+|....
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 808 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGS 808 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhh
Confidence 34568999999999999999999 7778999999999999997764333 34677999999886543
No 8
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.30 E-value=0.0036 Score=33.88 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=14.9
Q ss_pred hhhHHHHhhhhcHHHHHHH
Q 031504 83 KGTIRLQGVSQRHSVQKQA 101 (158)
Q Consensus 83 k~ivrLQal~RG~lvRkq~ 101 (158)
+++|.||+.+||+++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3577888888888888876
No 9
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.21 E-value=0.012 Score=60.14 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=55.0
Q ss_pred CCchh-HHHHHHHHHHHhhchHH---HHHHH--hhhhhHHHHhhhhcHHHHHHHHHHH----HHHhHHHHHHHHHHHHHH
Q 031504 54 LGMPV-EDVAAIRIQTAFRAYKA---RKTFR--RLKGTIRLQGVSQRHSVQKQATTTL----SYLHTWSKLQAEIRARRL 123 (158)
Q Consensus 54 ~~~~r-e~~AAi~IQsa~RGyla---Rr~~~--~lk~ivrLQal~RG~lvRkq~~~~l----r~~~A~vkIQs~iRgr~~ 123 (158)
++.+. .....+.||.+||||+. +..|. ..+.++.+|++.||+++|+.+...+ .++.+++.||+.+|++..
T Consensus 558 ~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~ 637 (1401)
T KOG2128|consen 558 LDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPN 637 (1401)
T ss_pred hhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 44444 55678999999999995 22222 3346999999999999999887444 458999999999999965
Q ss_pred hh
Q 031504 124 CM 125 (158)
Q Consensus 124 Rm 125 (158)
|-
T Consensus 638 r~ 639 (1401)
T KOG2128|consen 638 RK 639 (1401)
T ss_pred ch
Confidence 44
No 10
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.16 E-value=0.013 Score=57.11 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhhhh
Q 031504 59 EDVAAIRIQTAFRAYKARKTFRRLKG 84 (158)
Q Consensus 59 e~~AAi~IQsa~RGylaRr~~~~lk~ 84 (158)
.-.-|+.||++|||+++|.+|+.|++
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka 720 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKA 720 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999998884
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.85 E-value=0.023 Score=32.01 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.9
Q ss_pred hhhHHHHhhhhcHHHHHHH
Q 031504 83 KGTIRLQGVSQRHSVQKQA 101 (158)
Q Consensus 83 k~ivrLQal~RG~lvRkq~ 101 (158)
+.++.||+.+||+++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4678889999999998887
No 12
>PTZ00014 myosin-A; Provisional
Probab=94.29 E-value=0.11 Score=50.83 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=33.7
Q ss_pred hhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 031504 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (158)
Q Consensus 84 ~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~Rm 125 (158)
.++.||+.+||+++|+.|... .++++.||+.+|++..+.
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~---~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKN---IKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 467899999999999999544 579999999999998764
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.03 E-value=0.28 Score=52.19 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=34.4
Q ss_pred hHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031504 85 TIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRAR 121 (158)
Q Consensus 85 ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr 121 (158)
|+.|||.||||++|+.|......+.|+..||..+|.+
T Consensus 776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~ 812 (1930)
T KOG0161|consen 776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAY 812 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999998888899999999999988
No 14
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=0.28 Score=48.49 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHhhchHHHHHHH
Q 031504 57 PVEDVAAIRIQTAFRAYKARKTFR 80 (158)
Q Consensus 57 ~re~~AAi~IQsa~RGylaRr~~~ 80 (158)
-|++.||+.||..||||++|+.|.
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999987
No 15
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.31 E-value=0.4 Score=47.81 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHhhchHHHHHHHhh
Q 031504 57 PVEDVAAIRIQTAFRAYKARKTFRRL 82 (158)
Q Consensus 57 ~re~~AAi~IQsa~RGylaRr~~~~l 82 (158)
.+++.+|+.||+.||||++|+..+.+
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999999987743
No 16
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=85.42 E-value=1.5 Score=45.45 Aligned_cols=59 Identities=20% Similarity=0.101 Sum_probs=44.1
Q ss_pred HHHHHhhchHHHHHHHhhh--------hhHHHHhhhhcHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHhhh
Q 031504 65 RIQTAFRAYKARKTFRRLK--------GTIRLQGVSQRHSVQKQAT----TTLSYLHTWSKLQAEIRARRLCMV 126 (158)
Q Consensus 65 ~IQsa~RGylaRr~~~~lk--------~ivrLQal~RG~lvRkq~~----~~lr~~~A~vkIQs~iRgr~~Rm~ 126 (158)
+||+-.|||..|..+.... .++-+|+++||++. +. .-.....-++++|+..|+...|-.
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~ 610 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKK 610 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 4599999999998877443 37888999999996 22 222235678999999999888764
No 17
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=83.63 E-value=0.91 Score=44.97 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhchHHHHHHHhhhh-hHHHHhhhhcHHHHHHH
Q 031504 61 VAAIRIQTAFRAYKARKTFRRLKG-TIRLQGVSQRHSVQKQA 101 (158)
Q Consensus 61 ~AAi~IQsa~RGylaRr~~~~lk~-ivrLQal~RG~lvRkq~ 101 (158)
.=|.+||.+||.|++|+.|-.++. ... +.-|.-.|+.+
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~ 735 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRY 735 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHH
Confidence 368999999999999999998872 232 23355555555
No 18
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=81.99 E-value=2.4 Score=42.63 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhchHHHHHHHhhh-h----------hHHHHhhhhcHHHHHHHH----------------------HHHHH
Q 031504 61 VAAIRIQTAFRAYKARKTFRRLK-G----------TIRLQGVSQRHSVQKQAT----------------------TTLSY 107 (158)
Q Consensus 61 ~AAi~IQsa~RGylaRr~~~~lk-~----------ivrLQal~RG~lvRkq~~----------------------~~lr~ 107 (158)
.-++.||+++|||-.|+.|..+- + .-++|+-+||+..|..+. ...+-
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~ 913 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL 913 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999998442 1 244588888887765221 22233
Q ss_pred HhHHHHHHHHHHHHHHh
Q 031504 108 LHTWSKLQAEIRARRLC 124 (158)
Q Consensus 108 ~~A~vkIQs~iRgr~~R 124 (158)
-+|+++||+.+|....+
T Consensus 914 ~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 914 TRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 68999999999988777
No 19
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=81.27 E-value=2.2 Score=40.22 Aligned_cols=35 Identities=34% Similarity=0.246 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHhhchHHHHHHHhhhhhHHHHhh
Q 031504 57 PVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGV 91 (158)
Q Consensus 57 ~re~~AAi~IQsa~RGylaRr~~~~lk~ivrLQal 91 (158)
.+--+||+.||..+|+|.||.+.++.-.-..+|++
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 44568999999999999999988765555555654
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=78.97 E-value=11 Score=40.62 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhchHHHHHHHhhh----hhHHHHhhhhcHHHHHHH
Q 031504 60 DVAAIRIQTAFRAYKARKTFRRLK----GTIRLQGVSQRHSVQKQA 101 (158)
Q Consensus 60 ~~AAi~IQsa~RGylaRr~~~~lk----~ivrLQal~RG~lvRkq~ 101 (158)
..-.+.+|+.+|||++|+.|.... ++..||.=+|-++.-+..
T Consensus 773 s~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 773 SQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345788999999999999998433 788899999888766643
No 21
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=68.48 E-value=5.7 Score=24.67 Aligned_cols=19 Identities=42% Similarity=0.555 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhchHHHHHH
Q 031504 61 VAAIRIQTAFRAYKARKTF 79 (158)
Q Consensus 61 ~AAi~IQsa~RGylaRr~~ 79 (158)
=||..||-+||-+..|+.-
T Consensus 10 YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998864
No 22
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=65.68 E-value=14 Score=37.26 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhhchHHHHHHH-hhhhhHHHHh
Q 031504 58 VEDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQG 90 (158)
Q Consensus 58 re~~AAi~IQsa~RGylaRr~~~-~lk~ivrLQa 90 (158)
-+..+++++|+..|||++|++++ ++-++..+-+
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~ 844 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRPRIAGIRKINA 844 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 34567888999999999999887 5545444433
No 23
>PF15157 IQ-like: IQ-like
Probab=63.38 E-value=5.2 Score=29.82 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhchHHHHHHH
Q 031504 60 DVAAIRIQTAFRAYKARKTFR 80 (158)
Q Consensus 60 ~~AAi~IQsa~RGylaRr~~~ 80 (158)
+.-+.+||.+||-|++|....
T Consensus 47 eskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 47 ESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hHHHHHHHHHHHHHHHhcCCc
Confidence 455789999999999998755
No 24
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=60.76 E-value=35 Score=36.11 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhchHHHHHHH-hhhhhHHHH-hhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 031504 60 DVAAIRIQTAFRAYKARKTFR-RLKGTIRLQ-GVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRL 123 (158)
Q Consensus 60 ~~AAi~IQsa~RGylaRr~~~-~lk~ivrLQ-al~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~ 123 (158)
..+++.||..||.+..|..|+ .+..|..+| .+.+...++-.. +...-+.+.+.+|+.+|+..+
T Consensus 793 ~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~-e~~~~~~~~~L~~~~~rs~~~ 857 (1463)
T COG5022 793 WRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETE-EVEFSLKAEVLIQKFGRSLKA 857 (1463)
T ss_pred HHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhhhh
Confidence 567888888888888888888 444678888 444444444432 333345677888888887643
No 25
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=46.72 E-value=31 Score=34.96 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=23.9
Q ss_pred hhHHHHhhhhcHHHHHHH----------------HHHHH-HHhHHHHHHHHHHHHHH
Q 031504 84 GTIRLQGVSQRHSVQKQA----------------TTTLS-YLHTWSKLQAEIRARRL 123 (158)
Q Consensus 84 ~ivrLQal~RG~lvRkq~----------------~~~lr-~~~A~vkIQs~iRgr~~ 123 (158)
.|++||.+.||+..|+-+ ....+ ++++-..+|+++||..+
T Consensus 408 ni~klq~L~nG~~iRkl~~l~~s~~~~hlsv~~~q~L~R~evE~~sl~qsl~rG~l~ 464 (1054)
T COG5261 408 NIVKLQILGNGYEIRKLYSLGKSNCEEHLSVSLFQMLLRTEVEATSLVQSLLRGNLP 464 (1054)
T ss_pred HHHHHHHhhcceeeeeeecccccchhHHHHHHHHHHHHHHHhhccHHHHHHHhccch
Confidence 467778888888777311 11122 34444467888887765
No 26
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.94 E-value=59 Score=32.93 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=19.9
Q ss_pred hhhHHHHhhhhcHHHHHHHHHHHH
Q 031504 83 KGTIRLQGVSQRHSVQKQATTTLS 106 (158)
Q Consensus 83 k~ivrLQal~RG~lvRkq~~~~lr 106 (158)
.+++.||+.+|||++|+++....+
T Consensus 31 ~aa~~iq~~lrsyl~Rkk~~~~I~ 54 (1096)
T KOG4427|consen 31 AAALFIQRVLRSYLVRKKAQIEIQ 54 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999864443
No 27
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=41.71 E-value=48 Score=33.34 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=16.8
Q ss_pred hHHHHhhhhcHHHHHHHHHH
Q 031504 85 TIRLQGVSQRHSVQKQATTT 104 (158)
Q Consensus 85 ivrLQal~RG~lvRkq~~~~ 104 (158)
++.||..+||.++|..|..+
T Consensus 699 vtllQK~~RG~~~R~ry~rm 718 (1001)
T KOG0164|consen 699 VTLLQKAWRGWLARQRYRRM 718 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57779999999999998543
No 28
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.80 E-value=32 Score=34.97 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=20.8
Q ss_pred hhhhhHHHHhhhhcHHHHHHHHHHHH
Q 031504 81 RLKGTIRLQGVSQRHSVQKQATTTLS 106 (158)
Q Consensus 81 ~lk~ivrLQal~RG~lvRkq~~~~lr 106 (158)
+.+++|.+|.++||+.+|++.....|
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHH
Confidence 55689999999999999998765444
No 29
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=36.83 E-value=81 Score=31.93 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHhhchHHHHHHH
Q 031504 57 PVEDVAAIRIQTAFRAYKARKTFR 80 (158)
Q Consensus 57 ~re~~AAi~IQsa~RGylaRr~~~ 80 (158)
+-...||+.||.+.|||.+|+.|+
T Consensus 940 enkKkaavviqkmirgfiarrkfq 963 (1023)
T KOG0165|consen 940 ENKKKAAVVIQKMIRGFIARRKFQ 963 (1023)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334579999999999999999987
No 30
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=34.74 E-value=40 Score=34.23 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=18.1
Q ss_pred hhHHHHhhhhcHHHHHHHHHHH
Q 031504 84 GTIRLQGVSQRHSVQKQATTTL 105 (158)
Q Consensus 84 ~ivrLQal~RG~lvRkq~~~~l 105 (158)
.++++|+.+|||++|+++...+
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchHH
Confidence 3788999999999999885433
No 31
>PF03832 WSK: WSK motif; InterPro: IPR001573 Cell signalling mediated via GPCRs (G-protein-coupled receptors) involves the assembly of receptors, G-proteins, effectors and downstream elements into complexes that approach in design 'solid-state' signalling devices. Scaffold molecules, such as the AKAPs (A-kinase anchoring proteins), were discovered more than a decade ago and represent dynamic platforms, enabling multivalent signalling []. This family of functionally related proteins is classified on the basis of their ability to associate with the PKA holoenzyme inside cells. A shared property of most, if not all, AKAPs is the ability to form multivalent signal transduction complexes. Each anchoring protein contains at least two functional motifs []. The conserved PKA binding motif forms an amphipathic helix of 14-18 residues that interacts with hydrophobic determinants located in the extreme N terminus of the regulatory subunit dimmer. The subcellular address of each AKAP is encoded by a unique targeting motif. Gravin, an autoantigen recognised by serum from myasthenia gravis patients contains 3 repeats of this domain []. The WSK motif is short motif, named after three conserved residues found in the WXSXK motif, found in protein kinase A anchoring proteins. ; GO: 0006605 protein targeting, 0007165 signal transduction
Probab=34.72 E-value=22 Score=21.51 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=13.8
Q ss_pred Ccc--hhHhhhcccCCCCCCc
Q 031504 3 GDW--FKTFVCQKKVKVGSSK 21 (158)
Q Consensus 3 g~w--~k~ii~~kk~~~~~sk 21 (158)
|-| ||.+|..+|..++.++
T Consensus 5 ~~W~S~KrlVt~rkrsks~~~ 25 (31)
T PF03832_consen 5 STWASFKRLVTPRKRSKSSKE 25 (31)
T ss_pred chhHHHHhhcCcccccccchh
Confidence 557 9999999886665433
No 32
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=34.69 E-value=20 Score=34.60 Aligned_cols=21 Identities=38% Similarity=0.389 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHhhchHHHH
Q 031504 57 PVEDVAAIRIQTAFRAYKARK 77 (158)
Q Consensus 57 ~re~~AAi~IQsa~RGylaRr 77 (158)
-+...||..||.+||-|.+=.
T Consensus 337 rrr~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 337 RRRNPAASLIQCAWRYYAAEN 357 (654)
T ss_pred hhcchHHHHHHHHHHHHhccc
Confidence 345569999999999998765
No 33
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=30.18 E-value=1.1e+02 Score=25.29 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=17.0
Q ss_pred HHhHHHHHHHHHHHHHHhhhHH
Q 031504 107 YLHTWSKLQAEIRARRLCMVKE 128 (158)
Q Consensus 107 ~~~A~vkIQs~iRgr~~Rm~~e 128 (158)
..+.++.-|..+++-+.||-+|
T Consensus 74 dpd~v~~rqEa~eaAR~RmQEE 95 (190)
T PF06936_consen 74 DPDVVVRRQEAMEAARRRMQEE 95 (190)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHH
Confidence 3677888888998888888533
No 34
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=29.25 E-value=3.1e+02 Score=22.94 Aligned_cols=77 Identities=21% Similarity=0.114 Sum_probs=44.0
Q ss_pred HHHHHHHHhhchHHHHHHHhhh-----------------hhHHHHhhhhcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 031504 62 AAIRIQTAFRAYKARKTFRRLK-----------------GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC 124 (158)
Q Consensus 62 AAi~IQsa~RGylaRr~~~~lk-----------------~ivrLQal~RG~lvRkq~~~~lr~~~A~vkIQs~iRgr~~R 124 (158)
|.+.|+..+|.+.+.+....-- .++.-|+..+|-.-..++- .+.+++.+| +
T Consensus 87 ~~~~i~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml~~~~~~~~k~D~~eA~--------~t~lk~~~~----~ 154 (192)
T COG5374 87 AVTRIAVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEMLEENAKKGGKIDKMEAD--------STDLKARLR----K 154 (192)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcc--------hHHHHHHHh----h
Confidence 6788888887777666532111 1223344444444333331 134555555 3
Q ss_pred hhHHhHHHHHHHHHHHhhhhhhcccc
Q 031504 125 MVKEGRLRQKKLENQLKLDAKLNSLE 150 (158)
Q Consensus 125 m~~e~~~~qk~le~q~k~~~~l~~~~ 150 (158)
-..+-..+|++.|+..|+-++.+++-
T Consensus 155 ~~~~le~Lqkn~~~~~k~~d~~ne~~ 180 (192)
T COG5374 155 AQILLEGLQKNQEELFKLLDKYNELR 180 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444567888888888888877763
No 35
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=27.44 E-value=5.5e+02 Score=24.47 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=22.0
Q ss_pred CCchhHHHHHHHHHHHhhchHHHHHHH
Q 031504 54 LGMPVEDVAAIRIQTAFRAYKARKTFR 80 (158)
Q Consensus 54 ~~~~re~~AAi~IQsa~RGylaRr~~~ 80 (158)
..+...+.||-++|-.|.=|+..+-+.
T Consensus 358 LTk~~KnAAA~VLqeTW~i~K~trl~~ 384 (489)
T KOG3684|consen 358 LTKEHKNAAANVLQETWLIYKHTKLVS 384 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 345677899999999999998887654
No 36
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=24.34 E-value=89 Score=32.24 Aligned_cols=81 Identities=17% Similarity=0.062 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHHHhhchHHHHHHH-hhhhhHHHHhhhhcHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHhhhHHhH
Q 031504 56 MPVEDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVSQRHSVQKQATTTLSYLHT----WSKLQAEIRARRLCMVKEGR 130 (158)
Q Consensus 56 ~~re~~AAi~IQsa~RGylaRr~~~-~lk~ivrLQal~RG~lvRkq~~~~lr~~~A----~vkIQs~iRgr~~Rm~~e~~ 130 (158)
......||+-+|.+|+.|..+..++ ..++++.+|...+++..+..++... . ++ -..+....+|+.++|-.-|.
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~f~a~~~~~gd 1039 (1062)
T KOG4229|consen 962 AGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIFAADK-F-RKPVKRSLAAEEAREGFRAIMKFMGD 1039 (1062)
T ss_pred hhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhHHHhh-c-cchhhhHHHHHHHHHHHHHHHHhccc
Confidence 3456788999999999999999988 5558899999999998888775332 1 11 23344445788888877776
Q ss_pred HHHHHHHH
Q 031504 131 LRQKKLEN 138 (158)
Q Consensus 131 ~~qk~le~ 138 (158)
.-++..+.
T Consensus 1040 ~~~k~~~~ 1047 (1062)
T KOG4229|consen 1040 EPSKGSES 1047 (1062)
T ss_pred cccccchh
Confidence 66665554
No 37
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.10 E-value=4.2e+02 Score=23.60 Aligned_cols=48 Identities=23% Similarity=0.138 Sum_probs=37.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHhhhhhhcccc
Q 031504 103 TTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLE 150 (158)
Q Consensus 103 ~~lr~~~A~vkIQs~iRgr~~Rm~~e~~~~qk~le~q~k~~~~l~~~~ 150 (158)
...+-+--++.+|..++...+=+.+=.+.++--.++|..|.++|++|+
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elq 282 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQ 282 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345667788888877777666667788888899999999999986
Done!