BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031506
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
           Arginine Methyltransferase Prmt3
          Length = 321

 Score = 33.5 bits (75), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 60  EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
           ++++Q  + F    V+++G GT +  + AAK G+   +  D +  E+L     +  +NKL
Sbjct: 35  DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQS--EILYQAMDIIRLNKL 92

Query: 120 NCRLLM 125
              +++
Sbjct: 93  EDTIVL 98


>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
           Protein
 pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
 pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
           Allosteric Inhibitor (Prmt3- Ktd)
          Length = 340

 Score = 33.5 bits (75), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 60  EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
           ++++Q  + F    V+++G GT +  + AAK G+   L  D +  E+L     +  +NKL
Sbjct: 54  DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS--EILYQAMDIIRLNKL 111


>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
           The Primitive Red Alga Cyanidioschyzon Merolae
 pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
           The Primitive Red Alga Cyanidioschyzon Merolae
          Length = 281

 Score = 32.0 bits (71), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 45  EEYGLF---VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDS 101
           +E+ L+   VW  +  LA+ +  Q    +G  V ELGAG  L  +VA   G++  +  D 
Sbjct: 51  QEHPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDY 110

Query: 102 NRIEVLKNM 110
              E+L ++
Sbjct: 111 PDPEILNSL 119


>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
          Structure Of Arabidopsis Thaliana Protein Arginine
          Methyltransferase 10
 pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
          Structure Of Arabidopsis Thaliana Protein Arginine
          Methyltransferase 10
 pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
          Structure Of Arabidopsis Thaliana Protein Arginine
          Methyltransferase 10
 pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
          Structure Of Arabidopsis Thaliana Protein Arginine
          Methyltransferase 10
          Length = 376

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query: 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS 93
          V+Q ++ F G  V+++G G+ +  + +A+ G+
Sbjct: 55 VFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA 86


>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
 pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
 pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
 pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
 pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
 pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
          Length = 993

 Score = 26.6 bits (57), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 34/124 (27%)

Query: 41  ENMKEEYGLFVW--PCSVILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTL 97
           E MKE Y  F+   PC V                      AGT L P ++A      VTL
Sbjct: 418 EQMKERYEGFMRDVPCPVC---------------------AGTRLKPEILA------VTL 450

Query: 98  TDDSNRIEVLKNMRRVCEMNKLNCRLLMTSLP----PSHICSRVLQDQSSLRLIIIEVGI 153
             +S      K++  VCE++  +C   + +L        I  +VL++  S    +++VG+
Sbjct: 451 AGESKGEHGAKSIAEVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRLGFLLDVGL 510

Query: 154 ILLS 157
             LS
Sbjct: 511 EYLS 514


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,267,609
Number of Sequences: 62578
Number of extensions: 154846
Number of successful extensions: 423
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 10
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)