Query 031506
Match_columns 158
No_of_seqs 182 out of 1691
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 15:05:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 99.9 7.5E-27 1.6E-31 176.2 11.8 121 34-157 3-148 (173)
2 COG3897 Predicted methyltransf 99.7 6.3E-18 1.4E-22 128.5 6.1 109 45-155 54-169 (218)
3 KOG3201 Uncharacterized conser 99.7 8.5E-18 1.8E-22 124.5 3.8 110 47-158 6-133 (201)
4 PF06325 PrmA: Ribosomal prote 99.7 4.7E-16 1E-20 126.3 11.0 101 34-140 129-236 (295)
5 COG2264 PrmA Ribosomal protein 99.7 1.1E-15 2.3E-20 123.8 11.8 115 34-156 130-254 (300)
6 KOG2793 Putative N2,N2-dimethy 99.6 3.4E-15 7.4E-20 118.1 11.0 119 36-157 41-191 (248)
7 PF05175 MTS: Methyltransferas 99.6 7.9E-15 1.7E-19 110.0 11.4 99 53-157 18-132 (170)
8 COG4123 Predicted O-methyltran 99.6 4.6E-14 9.9E-19 111.7 11.8 112 37-157 18-162 (248)
9 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.4E-13 3E-18 107.9 7.6 87 69-157 58-153 (243)
10 COG2890 HemK Methylase of poly 99.5 3.8E-13 8.1E-18 108.7 9.4 88 53-143 94-190 (280)
11 TIGR00537 hemK_rel_arch HemK-r 99.4 1.4E-12 3E-17 98.3 11.3 81 54-140 7-93 (179)
12 TIGR00406 prmA ribosomal prote 99.4 2.7E-12 5.8E-17 103.9 13.3 116 34-157 127-251 (288)
13 COG2263 Predicted RNA methylas 99.4 1.3E-12 2.9E-17 99.2 10.4 94 45-140 17-119 (198)
14 TIGR00477 tehB tellurite resis 99.4 1.8E-12 3.9E-17 99.3 11.3 88 69-158 29-126 (195)
15 PRK00517 prmA ribosomal protei 99.4 3.7E-12 8.1E-17 101.0 13.0 116 34-157 87-205 (250)
16 PRK15001 SAM-dependent 23S rib 99.4 5.2E-12 1.1E-16 105.8 13.4 100 52-157 214-332 (378)
17 PRK11207 tellurite resistance 99.4 4E-12 8.7E-17 97.5 11.1 88 69-158 29-127 (197)
18 PRK09489 rsmC 16S ribosomal RN 99.4 4.6E-12 1E-16 105.0 11.3 99 53-157 183-295 (342)
19 PF12847 Methyltransf_18: Meth 99.4 3.4E-12 7.4E-17 88.3 8.8 86 70-157 1-103 (112)
20 PRK14967 putative methyltransf 99.4 7.9E-12 1.7E-16 97.4 11.8 87 53-142 20-114 (223)
21 PRK10909 rsmD 16S rRNA m(2)G96 99.4 6.1E-12 1.3E-16 97.0 10.7 83 69-153 52-145 (199)
22 COG2813 RsmC 16S RNA G1207 met 99.4 4.3E-12 9.3E-17 102.7 9.1 84 54-143 146-238 (300)
23 PLN02396 hexaprenyldihydroxybe 99.3 4.6E-12 9.9E-17 104.2 9.1 88 69-158 130-228 (322)
24 TIGR00095 RNA methyltransferas 99.3 1.9E-11 4.2E-16 93.5 11.3 83 68-152 47-144 (189)
25 PRK12335 tellurite resistance 99.3 1.1E-11 2.5E-16 100.1 10.2 87 69-157 119-215 (287)
26 KOG1270 Methyltransferases [Co 99.3 1.7E-12 3.7E-17 102.9 4.7 86 70-157 89-187 (282)
27 PRK11036 putative S-adenosyl-L 99.3 2.5E-11 5.3E-16 96.4 10.6 87 70-158 44-142 (255)
28 PRK14968 putative methyltransf 99.3 6E-11 1.3E-15 89.0 12.1 86 50-141 7-102 (188)
29 PRK14966 unknown domain/N5-glu 99.3 2.1E-11 4.6E-16 103.0 10.4 87 53-143 236-333 (423)
30 TIGR03704 PrmC_rel_meth putati 99.3 4.8E-11 1E-15 94.9 11.8 86 53-142 68-166 (251)
31 PF13847 Methyltransf_31: Meth 99.3 3.1E-11 6.7E-16 88.5 9.5 86 70-157 3-102 (152)
32 PLN02244 tocopherol O-methyltr 99.3 6.9E-11 1.5E-15 97.8 12.3 88 69-158 117-216 (340)
33 PF03602 Cons_hypoth95: Conser 99.3 3.3E-11 7.2E-16 91.8 9.5 82 69-152 41-138 (183)
34 PF13659 Methyltransf_26: Meth 99.3 1.8E-11 3.9E-16 85.4 7.2 84 71-156 1-106 (117)
35 TIGR03533 L3_gln_methyl protei 99.3 8.5E-11 1.8E-15 95.1 12.0 70 70-141 121-201 (284)
36 TIGR00536 hemK_fam HemK family 99.3 8.5E-11 1.8E-15 94.9 11.7 89 53-143 96-196 (284)
37 TIGR00138 gidB 16S rRNA methyl 99.2 6.9E-11 1.5E-15 89.8 10.0 84 69-157 41-134 (181)
38 PRK15128 23S rRNA m(5)C1962 me 99.2 7.5E-11 1.6E-15 99.5 11.1 73 70-144 220-308 (396)
39 PLN02585 magnesium protoporphy 99.2 8.7E-11 1.9E-15 96.4 10.9 83 69-153 143-239 (315)
40 PRK11783 rlmL 23S rRNA m(2)G24 99.2 9.7E-11 2.1E-15 105.1 10.6 86 70-157 538-648 (702)
41 PRK13168 rumA 23S rRNA m(5)U19 99.2 2E-10 4.4E-15 98.0 12.0 95 55-153 282-389 (443)
42 PRK05134 bifunctional 3-demeth 99.2 2.5E-10 5.4E-15 89.0 11.4 99 57-157 35-143 (233)
43 PF08241 Methyltransf_11: Meth 99.2 4E-11 8.7E-16 79.7 5.9 79 75-157 1-89 (95)
44 PF03848 TehB: Tellurite resis 99.2 1.3E-10 2.7E-15 89.2 9.1 86 68-155 28-123 (192)
45 PRK11805 N5-glutamine S-adenos 99.2 2.9E-10 6.4E-15 92.9 11.8 68 72-141 135-213 (307)
46 PRK00107 gidB 16S rRNA methylt 99.2 4.4E-10 9.5E-15 85.9 11.8 83 70-157 45-137 (187)
47 TIGR02021 BchM-ChlM magnesium 99.2 3.1E-10 6.6E-15 88.0 11.0 86 68-155 53-148 (219)
48 TIGR02085 meth_trns_rumB 23S r 99.2 2.5E-10 5.4E-15 95.6 10.9 82 69-153 232-323 (374)
49 PRK10258 biotin biosynthesis p 99.2 2E-10 4.3E-15 90.7 9.8 86 70-157 42-132 (251)
50 TIGR03534 RF_mod_PrmC protein- 99.2 4.6E-10 1E-14 88.0 11.8 89 50-141 68-166 (251)
51 PLN02336 phosphoethanolamine N 99.2 3.3E-10 7.2E-15 97.1 11.7 88 69-158 265-362 (475)
52 PRK03522 rumB 23S rRNA methylu 99.2 3.2E-10 7E-15 92.8 11.1 81 69-152 172-262 (315)
53 PRK15068 tRNA mo(5)U34 methylt 99.2 4E-10 8.7E-15 92.7 11.7 105 51-158 104-219 (322)
54 TIGR00452 methyltransferase, p 99.2 4.1E-10 8.9E-15 92.4 11.7 91 66-158 117-218 (314)
55 PF13489 Methyltransf_23: Meth 99.2 1.6E-10 3.5E-15 84.1 8.4 81 68-157 20-107 (161)
56 PRK09328 N5-glutamine S-adenos 99.2 3.9E-10 8.5E-15 89.8 11.3 89 52-142 90-188 (275)
57 TIGR01177 conserved hypothetic 99.2 4.4E-10 9.5E-15 92.5 11.5 99 57-157 169-286 (329)
58 PRK01544 bifunctional N5-gluta 99.2 2.2E-10 4.7E-15 99.5 9.9 71 71-143 139-220 (506)
59 PF02353 CMAS: Mycolic acid cy 99.1 4.4E-10 9.6E-15 90.5 10.9 103 54-158 46-159 (273)
60 KOG1499 Protein arginine N-met 99.1 1.7E-10 3.7E-15 94.7 8.5 89 62-153 52-151 (346)
61 smart00650 rADc Ribosomal RNA 99.1 3E-10 6.5E-15 84.9 9.1 79 61-142 4-90 (169)
62 PRK01683 trans-aconitate 2-met 99.1 5.6E-10 1.2E-14 88.4 11.1 84 69-158 30-123 (258)
63 PRK14103 trans-aconitate 2-met 99.1 3.8E-10 8.3E-15 89.5 10.0 82 69-158 28-119 (255)
64 PRK11727 23S rRNA mA1618 methy 99.1 2.3E-10 4.9E-15 94.1 8.8 75 70-146 114-206 (321)
65 PTZ00098 phosphoethanolamine N 99.1 4.1E-10 9E-15 90.1 9.9 103 53-158 35-149 (263)
66 PF13649 Methyltransf_25: Meth 99.1 2.2E-10 4.7E-15 78.5 7.0 82 74-157 1-99 (101)
67 PF08242 Methyltransf_12: Meth 99.1 1E-11 2.2E-16 84.6 0.3 82 75-158 1-96 (99)
68 PRK07580 Mg-protoporphyrin IX 99.1 5.7E-10 1.2E-14 86.5 9.5 84 69-154 62-155 (230)
69 PLN02672 methionine S-methyltr 99.1 3.4E-10 7.4E-15 104.9 9.5 89 53-143 100-217 (1082)
70 PRK08317 hypothetical protein; 99.1 1.8E-09 3.9E-14 83.2 12.0 102 55-158 4-117 (241)
71 PF05401 NodS: Nodulation prot 99.1 2.9E-10 6.2E-15 87.2 7.3 80 72-154 45-132 (201)
72 TIGR02752 MenG_heptapren 2-hep 99.1 1.6E-09 3.6E-14 84.2 11.7 87 69-157 44-143 (231)
73 PRK08287 cobalt-precorrin-6Y C 99.1 3.1E-09 6.7E-14 80.5 12.8 85 69-157 30-123 (187)
74 TIGR01983 UbiG ubiquinone bios 99.1 1.4E-09 3E-14 84.1 10.9 87 69-157 44-141 (224)
75 COG0742 N6-adenine-specific me 99.1 1.9E-09 4.2E-14 82.1 10.7 80 68-149 41-134 (187)
76 TIGR02469 CbiT precorrin-6Y C5 99.1 5.9E-09 1.3E-13 72.8 12.3 92 61-157 10-114 (124)
77 PLN02233 ubiquinone biosynthes 99.1 2.7E-09 5.8E-14 85.3 11.7 88 69-158 72-175 (261)
78 TIGR00080 pimt protein-L-isoas 99.1 1.3E-09 2.8E-14 84.5 9.6 80 54-135 61-152 (215)
79 PRK05785 hypothetical protein; 99.0 5.3E-10 1.2E-14 87.6 6.7 83 71-157 52-139 (226)
80 COG2226 UbiE Methylase involve 99.0 3.1E-09 6.6E-14 84.0 10.6 87 70-158 51-149 (238)
81 PRK15451 tRNA cmo(5)U34 methyl 99.0 1.8E-09 3.9E-14 85.5 9.3 87 70-158 56-157 (247)
82 PRK11705 cyclopropane fatty ac 99.0 3.3E-09 7.3E-14 89.2 11.2 93 62-158 159-260 (383)
83 smart00828 PKS_MT Methyltransf 99.0 2.2E-09 4.7E-14 83.2 9.1 85 72-158 1-97 (224)
84 PRK11873 arsM arsenite S-adeno 99.0 3.6E-09 7.7E-14 84.5 10.4 87 70-158 77-176 (272)
85 PRK06202 hypothetical protein; 99.0 1.8E-09 3.9E-14 84.4 8.3 84 70-155 60-158 (232)
86 PF01209 Ubie_methyltran: ubiE 99.0 2.1E-09 4.5E-14 84.8 8.7 102 49-158 32-146 (233)
87 COG2230 Cfa Cyclopropane fatty 99.0 4.3E-09 9.3E-14 84.9 10.6 96 60-157 62-168 (283)
88 KOG3420 Predicted RNA methylas 99.0 2.2E-09 4.9E-14 78.7 8.0 92 65-158 43-153 (185)
89 PRK13944 protein-L-isoaspartat 99.0 7.3E-09 1.6E-13 79.9 11.3 80 55-136 57-149 (205)
90 TIGR00479 rumA 23S rRNA (uraci 99.0 4.8E-09 1E-13 89.2 11.2 96 55-153 277-385 (431)
91 PRK05031 tRNA (uracil-5-)-meth 99.0 4.2E-09 9E-14 88.0 10.6 95 54-152 191-310 (362)
92 PRK00312 pcm protein-L-isoaspa 99.0 7.9E-09 1.7E-13 79.8 11.4 81 54-136 62-151 (212)
93 PHA03412 putative methyltransf 99.0 1.5E-09 3.3E-14 85.6 7.4 77 58-142 39-127 (241)
94 PRK14896 ksgA 16S ribosomal RN 99.0 3.5E-09 7.5E-14 84.5 9.4 83 57-142 16-104 (258)
95 PRK04148 hypothetical protein; 99.0 3E-09 6.5E-14 77.2 7.9 55 57-113 3-58 (134)
96 PRK00377 cbiT cobalt-precorrin 99.0 1.8E-08 3.9E-13 77.2 12.7 87 67-157 37-137 (198)
97 TIGR02143 trmA_only tRNA (urac 99.0 5.9E-09 1.3E-13 86.8 10.7 94 55-152 183-301 (353)
98 KOG2904 Predicted methyltransf 99.0 3.5E-09 7.5E-14 84.8 8.8 88 54-143 129-236 (328)
99 PRK00274 ksgA 16S ribosomal RN 99.0 5.3E-09 1.1E-13 84.1 9.7 81 58-142 30-118 (272)
100 TIGR02072 BioC biotin biosynth 98.9 6.4E-09 1.4E-13 80.4 9.5 84 69-157 33-127 (240)
101 TIGR03587 Pse_Me-ase pseudamin 98.9 3.6E-09 7.8E-14 81.8 8.0 78 70-153 43-132 (204)
102 PRK00216 ubiE ubiquinone/menaq 98.9 1.5E-08 3.4E-13 78.4 11.5 86 70-157 51-150 (239)
103 PTZ00338 dimethyladenosine tra 98.9 6E-09 1.3E-13 84.8 9.3 84 58-143 24-115 (294)
104 PRK10901 16S rRNA methyltransf 98.9 1.5E-08 3.2E-13 86.3 12.1 70 69-140 243-324 (427)
105 PF08003 Methyltransf_9: Prote 98.9 1.7E-08 3.6E-13 82.1 11.4 104 51-157 97-211 (315)
106 PRK13942 protein-L-isoaspartat 98.9 1.6E-08 3.4E-13 78.5 10.7 80 54-135 60-151 (212)
107 TIGR00740 methyltransferase, p 98.9 1.3E-08 2.8E-13 79.9 10.3 86 70-157 53-153 (239)
108 KOG1500 Protein arginine N-met 98.9 8.6E-09 1.9E-13 84.8 9.4 83 65-150 172-264 (517)
109 PHA03411 putative methyltransf 98.9 5.9E-09 1.3E-13 83.9 8.2 86 47-142 45-139 (279)
110 PRK04266 fibrillarin; Provisio 98.9 4.9E-08 1.1E-12 76.7 12.6 107 46-158 44-169 (226)
111 COG2518 Pcm Protein-L-isoaspar 98.9 1.8E-08 3.9E-13 78.0 9.8 86 47-134 49-143 (209)
112 PLN02490 MPBQ/MSBQ methyltrans 98.9 1E-08 2.2E-13 85.0 8.9 85 70-158 113-208 (340)
113 PRK07402 precorrin-6B methylas 98.9 7.4E-08 1.6E-12 73.5 12.5 84 69-157 39-134 (196)
114 TIGR03840 TMPT_Se_Te thiopurin 98.9 2.4E-08 5.2E-13 77.8 9.8 102 54-158 19-145 (213)
115 PRK00121 trmB tRNA (guanine-N( 98.9 3.1E-08 6.7E-13 76.3 10.3 86 70-157 40-148 (202)
116 COG1092 Predicted SAM-dependen 98.8 5.1E-08 1.1E-12 82.1 12.0 87 69-157 216-328 (393)
117 COG4976 Predicted methyltransf 98.8 1.2E-09 2.6E-14 85.5 2.1 86 71-158 126-218 (287)
118 KOG2920 Predicted methyltransf 98.8 6.3E-09 1.4E-13 83.5 5.8 101 46-148 89-216 (282)
119 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 8.6E-08 1.9E-12 73.4 11.4 85 70-157 39-135 (223)
120 PRK14904 16S rRNA methyltransf 98.8 1.4E-07 3.1E-12 80.7 13.3 87 49-140 232-329 (445)
121 TIGR00091 tRNA (guanine-N(7)-) 98.8 4.8E-08 1E-12 74.6 9.3 87 70-158 16-125 (194)
122 PRK06922 hypothetical protein; 98.8 4.2E-08 9.2E-13 86.9 9.8 88 69-158 417-530 (677)
123 PLN02336 phosphoethanolamine N 98.8 4.8E-08 1E-12 83.8 9.8 86 69-157 36-134 (475)
124 PLN02781 Probable caffeoyl-CoA 98.8 8.3E-08 1.8E-12 75.6 10.4 86 68-157 66-170 (234)
125 TIGR00755 ksgA dimethyladenosi 98.8 4.4E-08 9.5E-13 77.8 8.5 82 58-142 17-107 (253)
126 PRK13255 thiopurine S-methyltr 98.8 6.7E-08 1.5E-12 75.5 9.3 102 54-158 22-148 (218)
127 TIGR00446 nop2p NOL1/NOP2/sun 98.7 1.2E-07 2.6E-12 75.9 10.3 85 51-141 56-152 (264)
128 TIGR00478 tly hemolysin TlyA f 98.7 3.3E-08 7.1E-13 77.8 6.9 63 50-114 55-119 (228)
129 TIGR02716 C20_methyl_CrtF C-20 98.7 2.1E-07 4.6E-12 75.7 11.9 86 69-157 148-246 (306)
130 PRK14902 16S rRNA methyltransf 98.7 1.7E-07 3.7E-12 80.1 11.7 82 53-140 237-331 (444)
131 KOG1271 Methyltransferases [Ge 98.7 5.6E-08 1.2E-12 73.9 7.2 83 50-134 40-141 (227)
132 PRK14903 16S rRNA methyltransf 98.7 2.5E-07 5.5E-12 79.0 11.8 70 69-140 236-318 (431)
133 COG2265 TrmA SAM-dependent met 98.7 1.8E-07 4E-12 79.8 10.8 95 55-152 278-384 (432)
134 TIGR00308 TRM1 tRNA(guanine-26 98.7 1.3E-07 2.8E-12 79.4 9.7 67 71-140 45-124 (374)
135 PF10672 Methyltrans_SAM: S-ad 98.7 3E-07 6.6E-12 74.6 11.0 98 37-141 95-207 (286)
136 TIGR00563 rsmB ribosomal RNA s 98.7 4.3E-07 9.3E-12 77.3 12.0 83 53-141 225-321 (426)
137 PF05958 tRNA_U5-meth_tr: tRNA 98.6 1.3E-07 2.8E-12 78.8 8.2 88 53-143 180-292 (352)
138 smart00138 MeTrc Methyltransfe 98.6 2.1E-07 4.5E-12 74.6 8.9 87 70-158 99-235 (264)
139 COG4106 Tam Trans-aconitate me 98.6 8.5E-08 1.8E-12 74.7 6.3 83 70-158 30-122 (257)
140 TIGR02081 metW methionine bios 98.6 1.7E-07 3.6E-12 71.4 7.7 80 70-155 13-102 (194)
141 KOG3191 Predicted N6-DNA-methy 98.6 1.8E-07 3.9E-12 71.0 7.2 93 53-147 23-128 (209)
142 PRK04338 N(2),N(2)-dimethylgua 98.6 2.9E-07 6.2E-12 77.5 9.2 75 71-150 58-143 (382)
143 cd02440 AdoMet_MTases S-adenos 98.6 4.3E-07 9.3E-12 59.7 8.1 83 73-157 1-96 (107)
144 TIGR03438 probable methyltrans 98.6 4.3E-07 9.4E-12 74.0 9.7 86 70-157 63-169 (301)
145 COG2242 CobL Precorrin-6B meth 98.6 9.1E-07 2E-11 67.4 10.7 84 68-157 32-127 (187)
146 PF01135 PCMT: Protein-L-isoas 98.6 2.5E-07 5.5E-12 71.9 7.9 79 54-134 56-146 (209)
147 PRK13943 protein-L-isoaspartat 98.6 4E-07 8.6E-12 75.1 9.2 77 57-135 67-155 (322)
148 PRK14121 tRNA (guanine-N(7)-)- 98.5 8.2E-07 1.8E-11 74.8 10.6 87 70-158 122-228 (390)
149 PRK04457 spermidine synthase; 98.5 6E-07 1.3E-11 71.9 9.2 86 70-157 66-169 (262)
150 PTZ00146 fibrillarin; Provisio 98.5 2.1E-06 4.5E-11 69.9 12.3 107 46-157 104-229 (293)
151 PRK14901 16S rRNA methyltransf 98.5 1.3E-06 2.8E-11 74.6 11.5 69 69-139 251-335 (434)
152 PF01596 Methyltransf_3: O-met 98.5 9.3E-07 2E-11 68.5 9.4 98 55-156 30-146 (205)
153 PLN03075 nicotianamine synthas 98.5 1.5E-06 3.3E-11 70.7 10.7 87 70-158 123-226 (296)
154 PRK00811 spermidine synthase; 98.5 1.3E-06 2.8E-11 70.7 10.1 86 70-157 76-183 (283)
155 PLN02476 O-methyltransferase 98.5 2E-06 4.3E-11 69.6 10.8 85 69-157 117-220 (278)
156 PF02475 Met_10: Met-10+ like- 98.4 8.8E-07 1.9E-11 68.4 7.4 77 69-147 100-188 (200)
157 KOG3010 Methyltransferase [Gen 98.4 2.5E-07 5.5E-12 72.9 3.7 82 73-157 36-128 (261)
158 PF09445 Methyltransf_15: RNA 98.4 1.3E-06 2.8E-11 65.5 7.3 67 73-141 2-81 (163)
159 PRK13256 thiopurine S-methyltr 98.4 3.2E-06 7E-11 66.5 9.9 109 46-157 20-155 (226)
160 COG4122 Predicted O-methyltran 98.4 2.4E-06 5.3E-11 66.8 8.9 80 70-151 59-156 (219)
161 PF01170 UPF0020: Putative RNA 98.4 1.1E-06 2.4E-11 66.6 6.8 84 57-142 15-119 (179)
162 PF07021 MetW: Methionine bios 98.4 1.4E-06 3.1E-11 66.7 7.2 76 70-153 13-100 (193)
163 COG1041 Predicted DNA modifica 98.4 3.4E-06 7.3E-11 69.8 9.6 100 56-157 183-302 (347)
164 PRK11088 rrmA 23S rRNA methylt 98.4 3.3E-06 7.1E-11 67.7 9.4 59 70-134 85-156 (272)
165 COG0030 KsgA Dimethyladenosine 98.3 3.7E-06 8.1E-11 67.3 9.3 82 59-143 19-109 (259)
166 PF05185 PRMT5: PRMT5 arginine 98.3 4.4E-06 9.5E-11 71.8 10.1 83 70-154 186-286 (448)
167 PF05971 Methyltransf_10: Prot 98.3 1.3E-06 2.9E-11 71.1 6.4 74 71-146 103-194 (299)
168 TIGR00417 speE spermidine synt 98.3 8.4E-06 1.8E-10 65.4 10.5 86 70-157 72-178 (270)
169 KOG2187 tRNA uracil-5-methyltr 98.3 2.1E-06 4.5E-11 74.0 6.7 111 35-151 351-476 (534)
170 PRK03612 spermidine synthase; 98.2 5.9E-06 1.3E-10 72.2 9.1 86 70-157 297-407 (521)
171 PRK01581 speE spermidine synth 98.2 5.7E-06 1.2E-10 69.2 8.4 86 70-157 150-260 (374)
172 KOG4300 Predicted methyltransf 98.2 3.6E-06 7.9E-11 65.3 6.7 84 73-158 79-175 (252)
173 PRK11188 rrmJ 23S rRNA methylt 98.2 1.9E-05 4.1E-10 61.2 10.7 34 69-102 50-86 (209)
174 TIGR00438 rrmJ cell division p 98.2 1.8E-05 3.8E-10 59.9 10.3 47 57-103 19-68 (188)
175 PF05724 TPMT: Thiopurine S-me 98.2 4.3E-06 9.3E-11 65.4 6.7 102 53-157 21-147 (218)
176 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.8E-05 4E-10 71.4 11.4 86 55-142 174-316 (702)
177 PRK10742 putative methyltransf 98.2 1.1E-05 2.4E-10 64.2 8.5 72 73-146 91-181 (250)
178 COG2520 Predicted methyltransf 98.2 1E-05 2.3E-10 67.1 8.5 80 70-151 188-279 (341)
179 COG2519 GCD14 tRNA(1-methylade 98.1 1.9E-05 4.2E-10 62.8 9.2 83 68-156 92-186 (256)
180 KOG0820 Ribosomal RNA adenine 98.1 2.7E-05 5.9E-10 62.6 9.3 95 46-143 35-137 (315)
181 PLN02366 spermidine synthase 98.1 4.3E-05 9.3E-10 62.7 10.5 85 70-156 91-197 (308)
182 PLN02589 caffeoyl-CoA O-methyl 98.1 1.5E-05 3.3E-10 63.5 7.3 77 69-147 78-176 (247)
183 KOG2497 Predicted methyltransf 98.1 6.4E-06 1.4E-10 66.0 5.2 110 45-157 65-192 (262)
184 PF05219 DREV: DREV methyltran 98.0 1E-05 2.2E-10 64.6 5.8 82 70-157 94-180 (265)
185 KOG1541 Predicted protein carb 98.0 8.8E-06 1.9E-10 63.7 5.2 41 70-112 50-90 (270)
186 KOG1540 Ubiquinone biosynthesi 98.0 5.4E-05 1.2E-09 60.5 9.7 105 46-158 82-207 (296)
187 TIGR02987 met_A_Alw26 type II 98.0 2.3E-05 4.9E-10 68.4 8.1 71 70-142 31-125 (524)
188 PF02384 N6_Mtase: N-6 DNA Met 98.0 2.6E-05 5.6E-10 63.4 7.0 86 55-142 31-138 (311)
189 PF01861 DUF43: Protein of unk 97.9 9.6E-05 2.1E-09 58.5 9.7 106 46-155 21-138 (243)
190 PF08704 GCD14: tRNA methyltra 97.9 5.6E-05 1.2E-09 60.2 8.4 84 66-151 36-135 (247)
191 PRK11760 putative 23S rRNA C24 97.9 0.0001 2.3E-09 61.2 9.9 89 54-150 188-291 (357)
192 PF00398 RrnaAD: Ribosomal RNA 97.9 7.6E-05 1.6E-09 59.6 8.4 92 55-151 15-117 (262)
193 PF00891 Methyltransf_2: O-met 97.9 0.00015 3.3E-09 56.8 9.5 79 70-156 100-188 (241)
194 PHA01634 hypothetical protein 97.8 0.00011 2.5E-09 53.0 7.1 69 67-137 25-100 (156)
195 COG0116 Predicted N6-adenine-s 97.8 0.00016 3.4E-09 60.8 9.0 85 55-141 176-311 (381)
196 TIGR01444 fkbM_fam methyltrans 97.8 5.9E-05 1.3E-09 54.1 5.4 46 73-120 1-48 (143)
197 PF13679 Methyltransf_32: Meth 97.7 0.0002 4.4E-09 52.0 7.0 48 69-118 24-77 (141)
198 PLN02823 spermine synthase 97.7 0.00037 8.1E-09 57.9 9.2 66 70-137 103-184 (336)
199 COG3963 Phospholipid N-methylt 97.6 0.00036 7.8E-09 52.6 7.9 91 51-143 29-132 (194)
200 COG4076 Predicted RNA methylas 97.6 0.00013 2.9E-09 56.0 5.1 63 71-135 33-102 (252)
201 KOG2361 Predicted methyltransf 97.6 0.00012 2.6E-09 58.0 4.8 84 73-158 74-176 (264)
202 PF03291 Pox_MCEL: mRNA cappin 97.5 0.00053 1.2E-08 56.9 8.5 106 50-157 42-178 (331)
203 PRK00050 16S rRNA m(4)C1402 me 97.5 0.0006 1.3E-08 55.7 8.0 46 69-116 18-66 (296)
204 PF02390 Methyltransf_4: Putat 97.4 0.0011 2.3E-08 51.0 8.1 82 73-157 20-125 (195)
205 PRK11933 yebU rRNA (cytosine-C 97.3 0.0022 4.8E-08 55.5 10.0 84 53-140 98-194 (470)
206 PF09243 Rsm22: Mitochondrial 97.3 0.0023 5E-08 51.6 8.9 85 67-154 30-127 (274)
207 COG0220 Predicted S-adenosylme 97.3 0.0029 6.3E-08 49.8 9.2 84 72-157 50-156 (227)
208 COG0357 GidB Predicted S-adeno 97.2 0.0025 5.4E-08 49.8 8.3 66 71-138 68-144 (215)
209 PRK00536 speE spermidine synth 97.2 0.0034 7.3E-08 50.5 9.0 75 70-146 72-156 (262)
210 KOG1501 Arginine N-methyltrans 97.2 0.00089 1.9E-08 57.4 5.9 51 72-124 68-119 (636)
211 KOG2899 Predicted methyltransf 97.1 0.00058 1.3E-08 54.3 4.3 48 67-116 55-104 (288)
212 PF06080 DUF938: Protein of un 97.1 0.0029 6.3E-08 49.1 7.9 83 73-157 28-133 (204)
213 KOG3987 Uncharacterized conser 97.1 7.9E-05 1.7E-09 58.1 -1.0 85 70-157 112-198 (288)
214 KOG2671 Putative RNA methylase 97.1 0.00054 1.2E-08 56.9 3.8 72 69-142 207-297 (421)
215 PF02527 GidB: rRNA small subu 97.0 0.0018 3.9E-08 49.4 6.0 64 73-138 51-124 (184)
216 COG2521 Predicted archaeal met 97.0 0.0011 2.4E-08 52.6 4.8 85 70-156 134-236 (287)
217 PF04816 DUF633: Family of unk 97.0 0.0043 9.3E-08 48.1 7.7 47 74-122 1-49 (205)
218 COG1189 Predicted rRNA methyla 97.0 0.0024 5.2E-08 50.6 6.2 54 50-103 59-113 (245)
219 KOG1661 Protein-L-isoaspartate 96.9 0.0019 4E-08 50.4 5.0 69 47-117 57-131 (237)
220 COG0421 SpeE Spermidine syntha 96.9 0.015 3.3E-07 47.3 10.2 83 72-156 78-181 (282)
221 KOG2940 Predicted methyltransf 96.8 0.0016 3.5E-08 51.7 4.3 84 71-157 73-166 (325)
222 PF08123 DOT1: Histone methyla 96.8 0.0097 2.1E-07 46.2 8.3 81 68-150 40-144 (205)
223 KOG2730 Methylase [General fun 96.6 0.004 8.7E-08 49.0 5.0 88 52-141 75-178 (263)
224 COG3129 Predicted SAM-dependen 96.6 0.0069 1.5E-07 48.1 6.2 74 70-145 78-169 (292)
225 COG1568 Predicted methyltransf 96.6 0.0082 1.8E-07 48.8 6.6 81 67-150 149-242 (354)
226 PF01564 Spermine_synth: Sperm 96.5 0.014 3E-07 46.4 7.8 85 70-156 76-182 (246)
227 PF01728 FtsJ: FtsJ-like methy 96.5 0.0074 1.6E-07 45.1 5.9 51 53-103 4-59 (181)
228 PRK10611 chemotaxis methyltran 96.4 0.012 2.5E-07 48.0 6.8 86 71-158 116-255 (287)
229 KOG1663 O-methyltransferase [S 96.4 0.016 3.4E-07 45.7 7.0 83 68-152 71-174 (237)
230 COG0144 Sun tRNA and rRNA cyto 96.3 0.036 7.8E-07 46.4 9.4 69 69-139 155-239 (355)
231 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.2 0.046 9.9E-07 44.3 9.4 89 47-140 65-167 (283)
232 cd00315 Cyt_C5_DNA_methylase C 96.2 0.013 2.9E-07 47.2 6.2 64 73-138 2-72 (275)
233 KOG2078 tRNA modification enzy 96.1 0.0075 1.6E-07 51.5 4.4 85 34-121 211-298 (495)
234 PF12147 Methyltransf_20: Puta 96.0 0.17 3.7E-06 41.5 11.3 84 70-155 135-239 (311)
235 PRK01544 bifunctional N5-gluta 95.9 0.068 1.5E-06 46.8 9.2 86 70-157 347-454 (506)
236 KOG2915 tRNA(1-methyladenosine 95.8 0.12 2.5E-06 42.1 9.5 80 68-149 103-197 (314)
237 COG1352 CheR Methylase of chem 95.7 0.11 2.4E-06 42.0 9.0 86 70-157 96-233 (268)
238 PF02005 TRM: N2,N2-dimethylgu 95.6 0.039 8.4E-07 46.6 6.6 79 70-150 49-143 (377)
239 PF01555 N6_N4_Mtase: DNA meth 95.5 0.044 9.5E-07 41.6 6.1 60 50-112 172-231 (231)
240 KOG0024 Sorbitol dehydrogenase 95.5 0.049 1.1E-06 45.2 6.4 75 34-112 135-212 (354)
241 KOG1975 mRNA cap methyltransfe 95.4 0.11 2.3E-06 43.3 8.3 86 70-157 117-229 (389)
242 COG0500 SmtA SAM-dependent met 95.4 0.22 4.8E-06 33.3 8.8 79 74-156 52-146 (257)
243 PLN02232 ubiquinone biosynthes 95.4 0.04 8.7E-07 40.7 5.3 61 96-158 1-74 (160)
244 PF05891 Methyltransf_PK: AdoM 95.3 0.042 9.1E-07 43.0 5.4 81 70-152 55-148 (218)
245 COG1867 TRM1 N2,N2-dimethylgua 95.3 0.06 1.3E-06 45.3 6.5 80 71-152 53-145 (380)
246 KOG4058 Uncharacterized conser 94.9 0.042 9.2E-07 40.9 4.1 48 70-119 72-120 (199)
247 PF07942 N2227: N2227-like pro 94.9 0.46 9.9E-06 38.5 10.4 35 69-103 55-89 (270)
248 COG2384 Predicted SAM-dependen 94.9 0.18 3.9E-06 39.6 7.6 50 70-121 16-67 (226)
249 PF11968 DUF3321: Putative met 94.7 0.15 3.2E-06 40.0 6.8 92 53-157 30-136 (219)
250 PRK11524 putative methyltransf 94.7 0.13 2.9E-06 41.5 6.8 57 56-115 195-251 (284)
251 PF04445 SAM_MT: Putative SAM- 94.6 0.16 3.4E-06 40.3 6.9 70 72-143 77-165 (234)
252 PRK13699 putative methylase; P 94.6 0.17 3.8E-06 39.7 7.1 58 56-116 150-207 (227)
253 PF07757 AdoMet_MTase: Predict 94.5 0.073 1.6E-06 37.3 4.3 33 70-102 58-90 (112)
254 PF01269 Fibrillarin: Fibrilla 94.2 1 2.3E-05 35.5 10.6 108 45-156 44-169 (229)
255 PF03686 UPF0146: Uncharacteri 94.2 0.14 3E-06 36.8 5.2 43 57-102 3-46 (127)
256 COG1255 Uncharacterized protei 94.1 0.21 4.5E-06 35.5 5.9 81 58-153 4-89 (129)
257 KOG1227 Putative methyltransfe 94.0 0.039 8.5E-07 45.3 2.3 70 49-120 167-244 (351)
258 COG4262 Predicted spermidine s 93.9 0.24 5.1E-06 42.0 6.8 45 70-116 289-335 (508)
259 KOG1709 Guanidinoacetate methy 93.8 0.48 1E-05 37.5 7.9 87 69-157 100-198 (271)
260 TIGR03439 methyl_EasF probable 93.7 0.21 4.6E-06 41.3 6.2 84 70-155 76-187 (319)
261 PF01739 CheR: CheR methyltran 93.7 0.11 2.3E-06 40.0 4.2 42 70-113 31-83 (196)
262 COG0293 FtsJ 23S rRNA methylas 93.0 0.27 5.8E-06 38.2 5.4 50 53-102 28-80 (205)
263 PF07091 FmrO: Ribosomal RNA m 93.0 0.42 9.2E-06 38.2 6.7 55 71-127 106-162 (251)
264 TIGR00006 S-adenosyl-methyltra 92.9 1 2.2E-05 37.1 9.0 59 58-118 8-68 (305)
265 KOG1201 Hydroxysteroid 17-beta 92.7 0.73 1.6E-05 37.8 7.8 71 67-140 34-127 (300)
266 COG1565 Uncharacterized conser 92.6 0.54 1.2E-05 39.6 7.0 59 55-115 59-130 (370)
267 COG0286 HsdM Type I restrictio 91.8 0.78 1.7E-05 40.1 7.4 69 70-140 186-275 (489)
268 PF00145 DNA_methylase: C-5 cy 91.6 0.37 8.1E-06 38.6 4.9 41 73-115 2-43 (335)
269 KOG2912 Predicted DNA methylas 91.5 0.22 4.8E-06 41.4 3.5 69 74-144 106-193 (419)
270 PF11599 AviRa: RRNA methyltra 90.9 0.86 1.9E-05 36.0 6.1 45 70-116 51-99 (246)
271 TIGR00675 dcm DNA-methyltransf 90.9 0.39 8.4E-06 39.4 4.4 63 74-138 1-69 (315)
272 PF01234 NNMT_PNMT_TEMT: NNMT/ 90.8 0.2 4.3E-06 40.2 2.6 44 67-112 53-97 (256)
273 PF03141 Methyltransf_29: Puta 90.7 0.42 9.1E-06 41.8 4.6 51 45-95 88-142 (506)
274 PF02636 Methyltransf_28: Puta 90.4 0.86 1.9E-05 36.0 5.9 43 71-115 19-71 (252)
275 PF02086 MethyltransfD12: D12 90.3 0.36 7.9E-06 37.7 3.7 47 57-103 7-53 (260)
276 KOG2651 rRNA adenine N-6-methy 90.2 0.93 2E-05 38.6 6.0 34 70-103 153-187 (476)
277 COG1748 LYS9 Saccharopine dehy 89.7 1.2 2.6E-05 37.9 6.5 65 72-141 2-81 (389)
278 PF03059 NAS: Nicotianamine sy 89.1 4.4 9.6E-05 32.9 9.1 81 72-154 122-219 (276)
279 PF01488 Shikimate_DH: Shikima 88.8 2.8 6.2E-05 29.8 7.1 70 67-140 8-87 (135)
280 PRK01438 murD UDP-N-acetylmura 88.7 2.2 4.8E-05 36.7 7.6 69 67-136 12-86 (480)
281 KOG1269 SAM-dependent methyltr 87.9 1.3 2.9E-05 37.3 5.5 88 69-157 109-207 (364)
282 KOG1253 tRNA methyltransferase 87.6 0.62 1.3E-05 40.7 3.4 81 70-152 109-207 (525)
283 PRK08862 short chain dehydroge 87.0 12 0.00026 28.8 10.7 48 69-118 3-53 (227)
284 COG1064 AdhP Zn-dependent alco 86.5 1.9 4.1E-05 36.0 5.6 42 68-111 164-207 (339)
285 PF05206 TRM13: Methyltransfer 86.5 1.7 3.8E-05 34.9 5.3 43 60-102 8-57 (259)
286 PF13578 Methyltransf_24: Meth 86.0 0.44 9.6E-06 32.1 1.4 62 75-139 1-79 (106)
287 PRK09424 pntA NAD(P) transhydr 85.5 1.4 3.1E-05 38.7 4.7 42 69-112 163-206 (509)
288 COG5459 Predicted rRNA methyla 85.3 1 2.2E-05 38.1 3.5 86 66-154 109-211 (484)
289 COG3392 Adenine-specific DNA m 84.9 1.2 2.5E-05 36.3 3.5 48 55-102 7-59 (330)
290 PRK09242 tropinone reductase; 84.8 8.9 0.00019 29.5 8.5 47 68-116 6-55 (257)
291 PRK05867 short chain dehydroge 84.5 13 0.00028 28.6 9.3 48 69-118 7-57 (253)
292 PF10237 N6-adenineMlase: Prob 83.3 17 0.00036 27.2 9.5 100 53-157 10-115 (162)
293 PRK12548 shikimate 5-dehydroge 82.2 22 0.00048 28.7 10.1 47 55-102 110-160 (289)
294 PRK12549 shikimate 5-dehydroge 82.1 17 0.00038 29.3 9.4 49 55-103 111-162 (284)
295 PF05148 Methyltransf_8: Hypot 81.8 2.9 6.3E-05 32.8 4.5 49 50-102 53-103 (219)
296 PRK06172 short chain dehydroge 81.5 15 0.00033 28.1 8.6 56 69-126 5-63 (253)
297 COG0863 DNA modification methy 81.3 7.6 0.00017 30.8 7.0 61 54-117 207-267 (302)
298 KOG3115 Methyltransferase-like 80.8 2.2 4.7E-05 33.6 3.5 44 71-116 61-106 (249)
299 PRK00421 murC UDP-N-acetylmura 80.3 7 0.00015 33.5 6.8 66 68-139 4-77 (461)
300 COG1063 Tdh Threonine dehydrog 80.2 4.3 9.4E-05 33.7 5.4 41 70-112 168-211 (350)
301 PRK06139 short chain dehydroge 80.1 13 0.00028 30.5 8.1 56 69-126 5-63 (330)
302 PRK07063 short chain dehydroge 80.0 18 0.00038 27.9 8.6 46 69-116 5-53 (260)
303 PRK05876 short chain dehydroge 79.9 16 0.00035 28.8 8.4 57 69-127 4-63 (275)
304 PRK07035 short chain dehydroge 79.8 18 0.00038 27.7 8.5 46 69-116 6-54 (252)
305 PRK15001 SAM-dependent 23S rib 79.8 24 0.00052 29.9 9.7 102 47-155 23-132 (378)
306 COG1179 Dinucleotide-utilizing 79.3 9.3 0.0002 30.7 6.6 36 68-103 27-65 (263)
307 PLN02668 indole-3-acetate carb 79.3 1.4 2.9E-05 37.5 2.1 33 71-103 64-113 (386)
308 KOG4589 Cell division protein 79.2 3 6.5E-05 32.4 3.7 34 69-102 68-104 (232)
309 TIGR02356 adenyl_thiF thiazole 79.1 13 0.00027 28.4 7.3 35 68-102 18-55 (202)
310 PRK03369 murD UDP-N-acetylmura 79.0 8.3 0.00018 33.5 6.9 34 69-102 10-45 (488)
311 PF02737 3HCDH_N: 3-hydroxyacy 78.7 4.1 8.8E-05 30.6 4.4 40 74-115 2-43 (180)
312 PRK07523 gluconate 5-dehydroge 78.6 20 0.00043 27.5 8.4 56 68-126 7-66 (255)
313 PRK07097 gluconate 5-dehydroge 78.5 21 0.00047 27.6 8.7 57 68-126 7-66 (265)
314 cd01080 NAD_bind_m-THF_DH_Cycl 77.3 14 0.00031 27.5 7.0 42 61-102 34-78 (168)
315 COG1889 NOP1 Fibrillarin-like 77.0 33 0.00072 27.0 8.9 56 48-103 50-111 (231)
316 PRK07478 short chain dehydroge 76.8 26 0.00057 26.8 8.7 56 69-126 4-62 (254)
317 PRK05866 short chain dehydroge 76.7 22 0.00048 28.4 8.4 56 68-126 37-96 (293)
318 PRK07890 short chain dehydroge 76.3 29 0.00063 26.5 8.8 44 70-115 4-50 (258)
319 PRK08277 D-mannonate oxidoredu 76.3 20 0.00043 28.0 7.9 57 68-126 7-66 (278)
320 PRK08085 gluconate 5-dehydroge 76.0 26 0.00057 26.8 8.4 46 69-116 7-55 (254)
321 PRK06194 hypothetical protein; 75.9 26 0.00056 27.4 8.5 55 69-126 4-62 (287)
322 cd08283 FDH_like_1 Glutathione 75.8 7.9 0.00017 32.2 5.7 44 68-113 182-228 (386)
323 PRK12481 2-deoxy-D-gluconate 3 75.7 24 0.00052 27.2 8.2 34 69-102 6-42 (251)
324 KOG2798 Putative trehalase [Ca 75.5 18 0.0004 30.3 7.5 34 70-103 150-183 (369)
325 PF05050 Methyltransf_21: Meth 75.5 7.5 0.00016 27.6 4.9 41 76-118 1-49 (167)
326 COG0270 Dcm Site-specific DNA 75.3 6.7 0.00015 32.3 5.1 43 71-115 3-46 (328)
327 PRK06935 2-deoxy-D-gluconate 3 75.2 35 0.00076 26.2 9.0 44 58-102 3-49 (258)
328 PRK10458 DNA cytosine methylas 75.1 5.9 0.00013 34.6 4.9 42 71-114 88-130 (467)
329 PRK08213 gluconate 5-dehydroge 74.8 28 0.00061 26.7 8.4 56 68-126 9-68 (259)
330 TIGR00497 hsdM type I restrict 74.6 9.3 0.0002 33.4 6.1 70 70-141 217-305 (501)
331 PRK06124 gluconate 5-dehydroge 74.3 37 0.00079 26.0 9.6 57 68-126 8-67 (256)
332 cd00401 AdoHcyase S-adenosyl-L 74.1 15 0.00032 31.6 7.0 37 67-103 198-236 (413)
333 KOG2017 Molybdopterin synthase 74.1 18 0.0004 30.6 7.3 35 68-102 63-100 (427)
334 KOG1122 tRNA and rRNA cytosine 74.0 11 0.00024 32.6 6.1 68 68-137 239-320 (460)
335 KOG3045 Predicted RNA methylas 73.9 19 0.00042 29.4 7.1 30 70-102 180-209 (325)
336 KOG3178 Hydroxyindole-O-methyl 73.8 13 0.00027 31.2 6.3 77 72-153 179-263 (342)
337 PRK07677 short chain dehydroge 73.7 30 0.00065 26.5 8.2 43 71-115 1-46 (252)
338 PRK08644 thiamine biosynthesis 73.6 17 0.00036 28.1 6.7 35 68-102 25-62 (212)
339 PRK08589 short chain dehydroge 73.5 34 0.00074 26.7 8.6 55 69-126 4-61 (272)
340 PF07015 VirC1: VirC1 protein; 73.2 6.8 0.00015 31.0 4.4 27 87-114 25-51 (231)
341 PRK07791 short chain dehydroge 72.6 36 0.00077 27.0 8.6 34 69-102 4-40 (286)
342 KOG2352 Predicted spermine/spe 72.5 17 0.00038 31.8 7.0 82 72-156 50-152 (482)
343 PRK06701 short chain dehydroge 72.3 39 0.00085 26.8 8.8 58 68-126 43-103 (290)
344 PRK06128 oxidoreductase; Provi 72.2 44 0.00095 26.6 9.1 33 69-102 53-89 (300)
345 PRK05597 molybdopterin biosynt 72.2 18 0.0004 30.2 7.1 35 68-102 25-62 (355)
346 TIGR03206 benzo_BadH 2-hydroxy 72.0 39 0.00084 25.6 8.5 54 70-126 2-59 (250)
347 cd00757 ThiF_MoeB_HesA_family 71.8 24 0.00052 27.3 7.2 35 68-102 18-55 (228)
348 PRK08217 fabG 3-ketoacyl-(acyl 71.8 41 0.00088 25.4 8.5 44 69-115 3-50 (253)
349 PRK06113 7-alpha-hydroxysteroi 71.5 40 0.00087 25.8 8.5 44 69-114 9-55 (255)
350 TIGR03366 HpnZ_proposed putati 71.3 15 0.00033 29.0 6.1 35 69-103 119-156 (280)
351 PRK07109 short chain dehydroge 71.3 35 0.00076 27.9 8.5 56 69-126 6-64 (334)
352 TIGR00853 pts-lac PTS system, 70.7 12 0.00026 25.2 4.7 57 72-147 4-70 (95)
353 PRK09880 L-idonate 5-dehydroge 70.7 17 0.00036 29.6 6.4 42 68-111 167-211 (343)
354 PRK08303 short chain dehydroge 70.3 43 0.00093 27.0 8.7 33 69-101 6-41 (305)
355 PRK08762 molybdopterin biosynt 70.1 23 0.0005 29.7 7.2 33 69-101 133-168 (376)
356 PRK06949 short chain dehydroge 69.9 43 0.00094 25.5 8.4 55 69-126 7-65 (258)
357 PRK08993 2-deoxy-D-gluconate 3 69.8 44 0.00096 25.6 8.4 34 69-103 8-45 (253)
358 cd05188 MDR Medium chain reduc 69.6 21 0.00046 27.0 6.5 41 69-111 133-175 (271)
359 TIGR03201 dearomat_had 6-hydro 69.5 17 0.00038 29.6 6.3 41 68-110 164-206 (349)
360 cd08237 ribitol-5-phosphate_DH 69.4 8.1 0.00017 31.6 4.3 41 69-111 162-206 (341)
361 PRK07985 oxidoreductase; Provi 69.4 55 0.0012 26.1 9.1 59 68-126 46-107 (294)
362 PF04989 CmcI: Cephalosporin h 69.4 23 0.0005 27.5 6.5 85 69-157 31-139 (206)
363 PRK12475 thiamine/molybdopteri 69.4 27 0.00058 29.1 7.4 35 68-102 21-58 (338)
364 PRK05690 molybdopterin biosynt 69.2 16 0.00034 28.9 5.8 35 68-102 29-66 (245)
365 PF03721 UDPG_MGDP_dh_N: UDP-g 69.1 7.3 0.00016 29.5 3.7 30 74-103 3-34 (185)
366 PRK07814 short chain dehydroge 68.8 52 0.0011 25.4 8.6 44 69-115 8-55 (263)
367 PRK05650 short chain dehydroge 68.5 44 0.00095 25.9 8.2 51 73-126 2-56 (270)
368 PF13450 NAD_binding_8: NAD(P) 67.9 5.8 0.00013 24.8 2.5 27 77-103 2-30 (68)
369 PRK08339 short chain dehydroge 67.7 36 0.00079 26.5 7.6 44 69-114 6-52 (263)
370 PRK07688 thiamine/molybdopteri 67.7 31 0.00067 28.7 7.4 35 68-102 21-58 (339)
371 PRK07889 enoyl-(acyl carrier p 67.6 31 0.00068 26.7 7.2 43 69-111 5-52 (256)
372 PRK08643 acetoin reductase; Va 67.3 54 0.0012 25.0 8.4 53 71-126 2-58 (256)
373 PRK06720 hypothetical protein; 67.2 48 0.001 24.5 9.1 44 69-114 14-60 (169)
374 KOG0725 Reductases with broad 66.9 65 0.0014 25.8 9.3 48 67-116 4-54 (270)
375 PF04672 Methyltransf_19: S-ad 66.9 18 0.00039 29.3 5.6 84 72-157 70-182 (267)
376 PRK12826 3-ketoacyl-(acyl-carr 66.5 53 0.0012 24.7 10.6 55 69-126 4-62 (251)
377 PRK06125 short chain dehydroge 65.9 59 0.0013 25.0 8.6 44 69-115 5-52 (259)
378 cd01487 E1_ThiF_like E1_ThiF_l 65.7 34 0.00073 25.5 6.7 30 73-102 1-33 (174)
379 PRK05854 short chain dehydroge 65.5 59 0.0013 26.2 8.6 36 68-103 11-49 (313)
380 PRK01390 murD UDP-N-acetylmura 65.3 17 0.00036 31.1 5.6 64 69-138 7-75 (460)
381 TIGR02822 adh_fam_2 zinc-bindi 65.3 20 0.00044 29.0 5.9 36 68-103 163-200 (329)
382 PRK14027 quinate/shikimate deh 65.1 69 0.0015 25.9 8.8 47 56-102 112-161 (283)
383 TIGR00561 pntA NAD(P) transhyd 65.0 12 0.00026 33.1 4.7 41 69-111 162-204 (511)
384 PRK08306 dipicolinate synthase 64.9 29 0.00064 28.2 6.7 38 66-103 147-186 (296)
385 PRK13656 trans-2-enoyl-CoA red 64.3 91 0.002 26.8 9.6 47 55-102 24-76 (398)
386 PRK08628 short chain dehydroge 63.9 63 0.0014 24.7 8.3 35 68-103 4-42 (258)
387 PRK00141 murD UDP-N-acetylmura 63.8 25 0.00055 30.4 6.4 36 67-102 11-48 (473)
388 PRK07576 short chain dehydroge 63.8 67 0.0014 24.9 8.7 34 69-103 7-44 (264)
389 PRK07231 fabG 3-ketoacyl-(acyl 63.8 61 0.0013 24.4 8.4 43 69-114 3-49 (251)
390 PRK05872 short chain dehydroge 63.8 46 0.001 26.4 7.6 43 68-112 6-51 (296)
391 PRK14106 murD UDP-N-acetylmura 63.7 55 0.0012 27.7 8.4 63 69-134 3-73 (450)
392 KOG0821 Predicted ribosomal RN 63.5 26 0.00057 28.1 5.8 57 59-117 39-96 (326)
393 PF12242 Eno-Rase_NADH_b: NAD( 63.2 33 0.00071 22.5 5.3 46 57-102 25-74 (78)
394 PF00106 adh_short: short chai 62.8 51 0.0011 23.2 7.5 68 73-141 2-93 (167)
395 PRK12823 benD 1,6-dihydroxycyc 62.3 69 0.0015 24.5 8.5 34 69-102 6-42 (260)
396 cd08281 liver_ADH_like1 Zinc-d 62.2 27 0.00058 28.8 6.1 36 68-103 189-227 (371)
397 PRK06138 short chain dehydroge 61.5 68 0.0015 24.2 8.3 44 69-114 3-49 (252)
398 PRK08340 glucose-1-dehydrogena 61.5 61 0.0013 24.9 7.8 41 73-115 2-45 (259)
399 cd08254 hydroxyacyl_CoA_DH 6-h 61.2 30 0.00066 27.4 6.1 41 69-111 164-206 (338)
400 PRK02006 murD UDP-N-acetylmura 61.2 46 0.001 28.8 7.6 65 70-138 6-79 (498)
401 PF01795 Methyltransf_5: MraW 61.1 11 0.00024 31.1 3.6 54 68-123 18-73 (310)
402 PRK07454 short chain dehydroge 61.0 69 0.0015 24.1 9.1 33 70-103 5-41 (241)
403 PRK08265 short chain dehydroge 61.0 72 0.0016 24.6 8.1 33 69-102 4-40 (261)
404 PRK01710 murD UDP-N-acetylmura 60.9 27 0.00059 29.9 6.1 68 69-138 12-87 (458)
405 COG0771 MurD UDP-N-acetylmuram 60.8 36 0.00077 29.7 6.7 35 69-103 5-41 (448)
406 cd01065 NAD_bind_Shikimate_DH 60.7 56 0.0012 23.0 7.9 40 62-103 10-54 (155)
407 PRK06114 short chain dehydroge 60.6 74 0.0016 24.3 9.5 46 69-116 6-55 (254)
408 PRK05600 thiamine biosynthesis 60.6 46 0.001 28.0 7.3 35 68-102 38-75 (370)
409 cd01075 NAD_bind_Leu_Phe_Val_D 60.3 42 0.00091 25.5 6.5 42 66-111 23-68 (200)
410 PRK07453 protochlorophyllide o 60.3 61 0.0013 26.0 7.8 32 70-102 5-40 (322)
411 PRK07792 fabG 3-ketoacyl-(acyl 60.2 69 0.0015 25.6 8.1 35 68-102 9-46 (306)
412 COG1062 AdhC Zn-dependent alco 59.8 21 0.00045 30.2 4.9 34 70-103 185-221 (366)
413 COG2961 ComJ Protein involved 59.2 96 0.0021 25.2 8.9 103 49-155 65-183 (279)
414 cd08239 THR_DH_like L-threonin 59.2 32 0.00068 27.7 5.9 36 68-103 161-199 (339)
415 PRK07326 short chain dehydroge 59.1 74 0.0016 23.8 8.7 32 70-102 5-40 (237)
416 PRK09590 celB cellobiose phosp 59.0 22 0.00047 24.5 4.2 16 73-89 3-18 (104)
417 PRK09291 short chain dehydroge 58.8 78 0.0017 24.0 7.9 60 72-134 3-78 (257)
418 KOG1596 Fibrillarin and relate 58.6 99 0.0021 25.2 8.4 67 36-103 119-192 (317)
419 PRK08416 7-alpha-hydroxysteroi 58.3 83 0.0018 24.2 9.0 58 68-126 5-66 (260)
420 KOG2198 tRNA cytosine-5-methyl 58.3 46 0.00099 28.3 6.7 71 70-142 155-249 (375)
421 PRK00258 aroE shikimate 5-dehy 58.1 94 0.002 24.8 8.6 36 68-103 120-158 (278)
422 PRK07062 short chain dehydroge 57.9 84 0.0018 24.1 9.3 45 68-114 5-52 (265)
423 PLN02780 ketoreductase/ oxidor 57.9 40 0.00087 27.4 6.4 45 70-116 52-99 (320)
424 TIGR02818 adh_III_F_hyde S-(hy 57.4 29 0.00062 28.6 5.5 36 68-103 183-221 (368)
425 PRK07774 short chain dehydroge 57.3 82 0.0018 23.8 8.7 43 69-114 4-50 (250)
426 PF11899 DUF3419: Protein of u 57.3 39 0.00085 28.7 6.3 49 50-103 19-68 (380)
427 COG0275 Predicted S-adenosylme 57.2 1.1E+02 0.0023 25.5 8.5 54 68-123 21-77 (314)
428 PRK12770 putative glutamate sy 57.2 17 0.00037 29.9 4.1 40 63-102 10-51 (352)
429 PLN02740 Alcohol dehydrogenase 57.0 29 0.00063 28.7 5.5 41 68-110 196-239 (381)
430 COG0078 ArgF Ornithine carbamo 56.8 1.1E+02 0.0025 25.3 10.0 88 52-140 132-232 (310)
431 PRK07024 short chain dehydroge 56.7 58 0.0012 25.0 6.9 38 72-112 3-44 (257)
432 PF00107 ADH_zinc_N: Zinc-bind 56.3 10 0.00023 25.9 2.3 30 80-111 1-31 (130)
433 KOG2918 Carboxymethyl transfer 56.1 17 0.00037 30.2 3.8 55 44-101 64-120 (335)
434 PRK06153 hypothetical protein; 56.0 14 0.00031 31.5 3.4 34 69-102 174-210 (393)
435 PLN00203 glutamyl-tRNA reducta 54.9 70 0.0015 28.4 7.7 63 69-135 264-336 (519)
436 TIGR01425 SRP54_euk signal rec 54.3 93 0.002 27.0 8.2 84 72-155 101-208 (429)
437 PRK02705 murD UDP-N-acetylmura 54.3 48 0.001 28.2 6.5 65 73-138 2-78 (459)
438 COG5379 BtaA S-adenosylmethion 54.2 30 0.00066 28.8 4.9 50 50-103 47-96 (414)
439 PRK08278 short chain dehydroge 53.8 1E+02 0.0023 23.9 8.5 34 69-102 4-40 (273)
440 PRK12939 short chain dehydroge 53.6 94 0.002 23.4 8.7 44 69-115 5-52 (250)
441 PRK02318 mannitol-1-phosphate 53.5 17 0.00037 30.5 3.6 39 73-113 2-43 (381)
442 PRK12429 3-hydroxybutyrate deh 53.4 96 0.0021 23.4 8.6 54 70-126 3-60 (258)
443 TIGR00936 ahcY adenosylhomocys 52.3 35 0.00075 29.3 5.2 36 68-103 192-229 (406)
444 PF03435 Saccharop_dh: Sacchar 52.1 34 0.00074 28.5 5.1 60 74-139 1-78 (386)
445 COG0541 Ffh Signal recognition 51.9 94 0.002 27.1 7.7 82 72-154 101-207 (451)
446 TIGR00518 alaDH alanine dehydr 51.9 31 0.00066 29.0 4.8 35 69-103 165-201 (370)
447 PRK04690 murD UDP-N-acetylmura 51.9 25 0.00053 30.4 4.4 34 69-102 6-41 (468)
448 PF01262 AlaDh_PNT_C: Alanine 51.6 22 0.00047 26.1 3.5 35 68-102 17-53 (168)
449 PRK07666 fabG 3-ketoacyl-(acyl 51.4 1E+02 0.0022 23.2 8.5 54 70-126 6-63 (239)
450 PRK05855 short chain dehydroge 51.3 1.1E+02 0.0025 26.2 8.5 56 69-127 313-372 (582)
451 COG0773 MurC UDP-N-acetylmuram 51.3 12 0.00026 32.6 2.3 24 80-103 17-42 (459)
452 PLN02253 xanthoxin dehydrogena 50.5 1.2E+02 0.0025 23.6 8.0 34 68-102 15-52 (280)
453 TIGR01081 mpl UDP-N-acetylmura 50.5 15 0.00033 31.3 2.9 55 79-138 10-70 (448)
454 COG0300 DltE Short-chain dehyd 50.4 1.3E+02 0.0029 24.2 8.2 57 69-127 4-64 (265)
455 PRK08328 hypothetical protein; 50.4 16 0.00034 28.6 2.7 35 68-102 24-61 (231)
456 PRK04663 murD UDP-N-acetylmura 50.2 52 0.0011 28.0 6.1 32 72-103 8-43 (438)
457 PRK12743 oxidoreductase; Provi 50.2 1.1E+02 0.0025 23.3 9.0 54 71-126 2-59 (256)
458 PRK11524 putative methyltransf 49.9 20 0.00043 28.8 3.3 31 127-157 25-72 (284)
459 COG1004 Ugd Predicted UDP-gluc 49.9 25 0.00055 30.2 4.0 30 74-103 3-34 (414)
460 PRK07201 short chain dehydroge 49.9 1.1E+02 0.0024 27.2 8.3 55 69-126 369-427 (657)
461 TIGR01082 murC UDP-N-acetylmur 49.9 23 0.0005 30.2 3.9 54 80-139 9-69 (448)
462 PRK05717 oxidoreductase; Valid 49.8 1.1E+02 0.0025 23.2 7.6 35 67-102 6-44 (255)
463 COG0373 HemA Glutamyl-tRNA red 49.8 91 0.002 26.9 7.3 47 53-102 163-212 (414)
464 cd01492 Aos1_SUMO Ubiquitin ac 49.4 38 0.00082 25.8 4.6 35 68-102 18-55 (197)
465 TIGR01832 kduD 2-deoxy-D-gluco 49.3 1.1E+02 0.0024 23.0 9.5 33 69-102 3-39 (248)
466 PRK06181 short chain dehydroge 49.2 1.2E+02 0.0025 23.2 8.8 52 72-126 2-57 (263)
467 PF00670 AdoHcyase_NAD: S-aden 48.6 61 0.0013 24.2 5.5 48 56-103 7-57 (162)
468 PRK12771 putative glutamate sy 48.6 21 0.00045 31.6 3.5 33 69-101 135-169 (564)
469 PRK08226 short chain dehydroge 48.2 1.2E+02 0.0026 23.1 8.5 33 69-102 4-40 (263)
470 PRK13394 3-hydroxybutyrate deh 48.2 1.2E+02 0.0026 23.0 9.5 56 69-127 5-64 (262)
471 PF03492 Methyltransf_7: SAM d 48.0 16 0.00035 30.3 2.6 34 70-103 16-67 (334)
472 PF04072 LCM: Leucine carboxyl 47.8 1.1E+02 0.0024 22.6 8.2 45 72-117 80-124 (183)
473 COG0499 SAM1 S-adenosylhomocys 47.7 36 0.00079 29.1 4.5 51 46-103 190-243 (420)
474 cd08300 alcohol_DH_class_III c 47.7 62 0.0014 26.5 6.0 35 69-103 185-222 (368)
475 cd00755 YgdL_like Family of ac 47.6 17 0.00036 28.6 2.5 34 69-102 9-45 (231)
476 TIGR01289 LPOR light-dependent 47.5 1.4E+02 0.003 24.0 7.9 32 71-102 3-38 (314)
477 COG1743 Adenine-specific DNA m 47.4 27 0.00059 32.6 4.0 35 69-103 89-123 (875)
478 TIGR01470 cysG_Nterm siroheme 47.3 45 0.00098 25.6 4.8 35 69-103 7-43 (205)
479 PRK11730 fadB multifunctional 47.1 37 0.00081 31.2 4.9 40 72-113 314-355 (715)
480 PRK06197 short chain dehydroge 46.8 1.4E+02 0.0031 23.5 8.4 34 68-102 13-50 (306)
481 cd08232 idonate-5-DH L-idonate 46.8 76 0.0017 25.3 6.3 34 70-103 165-201 (339)
482 cd05564 PTS_IIB_chitobiose_lic 46.6 60 0.0013 21.7 4.8 10 77-86 4-13 (96)
483 cd08230 glucose_DH Glucose deh 46.6 71 0.0015 26.0 6.2 33 69-101 171-205 (355)
484 COG0505 CarA Carbamoylphosphat 46.5 1.3E+02 0.0028 25.6 7.5 60 93-156 180-248 (368)
485 PLN02494 adenosylhomocysteinas 46.0 33 0.00071 30.1 4.2 36 68-103 251-288 (477)
486 PRK09072 short chain dehydroge 45.9 1.3E+02 0.0028 23.1 7.3 34 70-103 4-40 (263)
487 cd01078 NAD_bind_H4MPT_DH NADP 45.7 1.2E+02 0.0027 22.4 8.9 37 66-102 23-62 (194)
488 KOG1098 Putative SAM-dependent 45.6 39 0.00084 30.9 4.6 49 54-102 28-79 (780)
489 PRK14573 bifunctional D-alanyl 45.4 48 0.001 30.8 5.4 61 73-139 6-74 (809)
490 PRK07904 short chain dehydroge 45.1 1.4E+02 0.003 23.0 7.4 46 70-116 7-56 (253)
491 TIGR00507 aroE shikimate 5-deh 45.1 1.5E+02 0.0033 23.4 8.3 34 68-102 114-150 (270)
492 PRK06198 short chain dehydroge 45.0 1.4E+02 0.003 22.7 8.2 33 69-102 4-41 (260)
493 KOG0022 Alcohol dehydrogenase, 44.9 45 0.00097 28.1 4.6 34 70-103 192-228 (375)
494 PRK06035 3-hydroxyacyl-CoA deh 44.9 49 0.0011 26.4 4.8 39 72-112 4-44 (291)
495 PRK02472 murD UDP-N-acetylmura 44.7 1.1E+02 0.0024 25.8 7.2 33 70-102 4-38 (447)
496 PRK05476 S-adenosyl-L-homocyst 44.7 71 0.0015 27.6 6.0 36 68-103 209-246 (425)
497 cd01491 Ube1_repeat1 Ubiquitin 44.6 1.5E+02 0.0033 24.1 7.6 34 69-102 17-53 (286)
498 TIGR03451 mycoS_dep_FDH mycoth 44.5 40 0.00088 27.5 4.4 40 69-110 175-217 (358)
499 PRK07533 enoyl-(acyl carrier p 44.3 1.1E+02 0.0023 23.7 6.6 35 68-102 7-46 (258)
500 PRK07825 short chain dehydroge 44.2 1.5E+02 0.0032 22.9 7.5 33 70-102 4-39 (273)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.94 E-value=7.5e-27 Score=176.18 Aligned_cols=121 Identities=33% Similarity=0.473 Sum_probs=79.5
Q ss_pred ceEEEEeccCCCCCceEecchHHHHHHHHHhc------ccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHH
Q 031506 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQ------RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIE 105 (158)
Q Consensus 34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~------~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~ 105 (158)
..+|.|.|....++|.++||++.+|++|+.++ ...+++++|||||||+|++|+.+++. +.+|++||+++
T Consensus 3 ~~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--- 79 (173)
T PF10294_consen 3 NKTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--- 79 (173)
T ss_dssp --------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----
T ss_pred ccccccccccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---
Confidence 45689999988899999999999999999984 56778999999999999999999998 56999999986
Q ss_pred HHHHHHHHHHHcC----CcceEEEcCC------------CCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506 106 VLKNMRRVCEMNK----LNCRLLMTSL------------PPSHIC-SRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 106 ~l~~~~~n~~~n~----~~~~~~~~d~------------~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
.+++++.|++.|+ .++.+...+| +||+|+ +||+|+.+.+++|++|+..++..
T Consensus 80 ~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~ 148 (173)
T PF10294_consen 80 VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKP 148 (173)
T ss_dssp HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT
T ss_pred hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCC
Confidence 7999999999987 2345555554 699999 99999999999999999998864
No 2
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.72 E-value=6.3e-18 Score=128.50 Aligned_cols=109 Identities=19% Similarity=0.300 Sum_probs=99.3
Q ss_pred CCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceE
Q 031506 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRL 123 (158)
Q Consensus 45 ~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~ 123 (158)
+.++.+.|.+++.+|+|+..++..+++++|||+|+|+|+++|.+++.|+ .|+++|+.+. .+.+++.|++.|+..+.+
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~--~~~ai~lNa~angv~i~~ 131 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW--LEQAIRLNAAANGVSILF 131 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChH--HHHHhhcchhhccceeEE
Confidence 4588999999999999999999999999999999999999999999998 8999999965 889999999999988777
Q ss_pred EEcCC-----CCcEEE-ecCCCCCccHHHHHHHHHHHh
Q 031506 124 LMTSL-----PPSHIC-SRVLQDQSSLRLIIIEVGIIL 155 (158)
Q Consensus 124 ~~~d~-----~fD~Ii-~d~iy~~~~~~~ll~tl~~ll 155 (158)
...|. .||+|+ .|++|....+..++..+..+.
T Consensus 132 ~~~d~~g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~ 169 (218)
T COG3897 132 THADLIGSPPAFDLLLAGDLFYNHTEADRLIPWKDRLA 169 (218)
T ss_pred eeccccCCCcceeEEEeeceecCchHHHHHHHHHHHHH
Confidence 65543 899999 999999999999999776554
No 3
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=8.5e-18 Score=124.50 Aligned_cols=110 Identities=24% Similarity=0.356 Sum_probs=93.5
Q ss_pred CceEecchHHHHHHHHHhcccCCCCCeEEEeccC-CCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCC----
Q 031506 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL---- 119 (158)
Q Consensus 47 ~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~G-tGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~---- 119 (158)
+..++||+.+.|+.++++++..+.+++|||||.| ||+.|+++|.... .|.+||.++. .+++.++-...|..
T Consensus 6 gnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~--svrnv~ki~~~n~~s~~t 83 (201)
T KOG3201|consen 6 GNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEE--SVRNVEKIRNSNMASSLT 83 (201)
T ss_pred CcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHH--HHHHHHHHHhcccccccc
Confidence 3468999999999999999999999999999999 9999999988754 8999999975 88888887777732
Q ss_pred cceEEEcCC----------CCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506 120 NCRLLMTSL----------PPSHIC-SRVLQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 120 ~~~~~~~d~----------~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~ 158 (158)
++.+..+.+ .||+|+ +||+|..+.+++|++|+..+|.++
T Consensus 84 sc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~ 133 (201)
T KOG3201|consen 84 SCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPS 133 (201)
T ss_pred eehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcc
Confidence 233333321 899999 999999999999999999999764
No 4
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.67 E-value=4.7e-16 Score=126.25 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=82.3
Q ss_pred ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 031506 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~ 112 (158)
...|.|.+.+..++|.| |++....+++.+. ..++++|||+|||||+++++++++|+ +|+++|+++. +++.+++
T Consensus 129 ~~~I~idPg~AFGTG~H--~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~--Av~~a~~ 202 (295)
T PF06325_consen 129 EIVIEIDPGMAFGTGHH--PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPL--AVEAARE 202 (295)
T ss_dssp SEEEEESTTSSS-SSHC--HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCH--HHHHHHH
T ss_pred cEEEEECCCCcccCCCC--HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHH--HHHHHHH
Confidence 56788888888888887 8999999999875 45678999999999999999999999 8999999986 9999999
Q ss_pred HHHHcCCcceEEEc---C---CCCcEEEecCCCC
Q 031506 113 VCEMNKLNCRLLMT---S---LPPSHICSRVLQD 140 (158)
Q Consensus 113 n~~~n~~~~~~~~~---d---~~fD~Ii~d~iy~ 140 (158)
|+..|++..++... + .+||+|+++++..
T Consensus 203 N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 203 NAELNGVEDRIEVSLSEDLVEGKFDLVVANILAD 236 (295)
T ss_dssp HHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HH
T ss_pred HHHHcCCCeeEEEEEecccccccCCEEEECCCHH
Confidence 99999988766432 2 3899999888654
No 5
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.1e-15 Score=123.83 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=89.5
Q ss_pred ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 031506 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~ 112 (158)
.+.|+|.+.+..++|++ |.+..-.+++.+.. .++++|||+|||||+++|+++++|+ +|+++|+++. +++.++.
T Consensus 130 ~~~i~lDPGlAFGTG~H--pTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~--AV~aa~e 203 (300)
T COG2264 130 ELNIELDPGLAFGTGTH--PTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQ--AVEAARE 203 (300)
T ss_pred ceEEEEccccccCCCCC--hhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHH--HHHHHHH
Confidence 56688888777888886 88888888887743 4889999999999999999999999 6999999976 9999999
Q ss_pred HHHHcCCc--ceEEEc-------CCCCcEEEecCCCCCccHHHHHHHHHHHhc
Q 031506 113 VCEMNKLN--CRLLMT-------SLPPSHICSRVLQDQSSLRLIIIEVGIILL 156 (158)
Q Consensus 113 n~~~n~~~--~~~~~~-------d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~ 156 (158)
|+..|++. .++... ..+||+|+++++= +-+..|...+..+++
T Consensus 204 Na~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA--~vl~~La~~~~~~lk 254 (300)
T COG2264 204 NARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA--EVLVELAPDIKRLLK 254 (300)
T ss_pred HHHHcCCchhhhcccccchhhcccCcccEEEehhhH--HHHHHHHHHHHHHcC
Confidence 99999987 333333 2389999988843 223345555554443
No 6
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.63 E-value=3.4e-15 Score=118.09 Aligned_cols=119 Identities=26% Similarity=0.470 Sum_probs=91.5
Q ss_pred EEEEeccCCCCCceEecchHHHHHHHHHhccc------CCC-----CCeEEEeccCCCHHHHHHhh-cCCEEEEEecCCh
Q 031506 36 SIAIIENMKEEYGLFVWPCSVILAEYVWQQRY------RFS-----GANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR 103 (158)
Q Consensus 36 ~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~------~~~-----~~~vLELG~GtGl~~i~~a~-~g~~v~~tD~~~~ 103 (158)
+..+......+..+.+|+++-.++.++..++. ... ..+|||||+|||++|+.+|. .+++|..||...
T Consensus 41 ~~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~- 119 (248)
T KOG2793|consen 41 KTVIESGLEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK- 119 (248)
T ss_pred eeecccccccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh-
Confidence 35555656678999999999999999987655 222 34699999999999999888 677999999986
Q ss_pred HHHHHHHHHHHHHcCC-------cceEEEcCC-----------C-CcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506 104 IEVLKNMRRVCEMNKL-------NCRLLMTSL-----------P-PSHIC-SRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 104 ~~~l~~~~~n~~~n~~-------~~~~~~~d~-----------~-fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
.+.+++.|...|+. .+.+...+| . ||+|+ +||+|.++.++.|+.+++.++..
T Consensus 120 --~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~ 191 (248)
T KOG2793|consen 120 --VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAK 191 (248)
T ss_pred --hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhc
Confidence 45555555444332 233333322 4 89999 99999999999999999999863
No 7
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.61 E-value=7.9e-15 Score=110.04 Aligned_cols=99 Identities=25% Similarity=0.292 Sum_probs=77.4
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC-
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL- 128 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~- 128 (158)
+++.+|++++... ++.+|||+|||+|.+|+.+++.+. +|+++|+++. +++.+++|++.|++. +++...|.
T Consensus 18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~--a~~~a~~n~~~n~~~~v~~~~~d~~ 91 (170)
T PF05175_consen 18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPD--ALELAKRNAERNGLENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHH--HHHHHHHHHHHTTCTTEEEEESSTT
T ss_pred HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHH--HHHHHHHHHHhcCcccccccccccc
Confidence 5788999988875 567899999999999999999876 5999999965 999999999999987 66666554
Q ss_pred ------CCcEEEecCCCCCcc------HHHHHHHHHHHhcC
Q 031506 129 ------PPSHICSRVLQDQSS------LRLIIIEVGIILLS 157 (158)
Q Consensus 129 ------~fD~Ii~d~iy~~~~------~~~ll~tl~~ll~~ 157 (158)
+||+|+++|+++... ...+++.....|.+
T Consensus 92 ~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~ 132 (170)
T PF05175_consen 92 EALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP 132 (170)
T ss_dssp TTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE
T ss_pred ccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccC
Confidence 799999777765543 46666666665543
No 8
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.56 E-value=4.6e-14 Score=111.71 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=88.3
Q ss_pred EEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHH
Q 031506 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVC 114 (158)
Q Consensus 37 ~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g-~~v~~tD~~~~~~~l~~~~~n~ 114 (158)
+.|.| ...|++.--++..|+.|+... ..++|||||||+|++++++|++ . ++|+++|+++. +.+.+++|+
T Consensus 18 ~~I~q---~~~~~~~~~DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~--~a~~A~~nv 88 (248)
T COG4123 18 FFIIQ---DRCGFRYGTDAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEE--AAEMAQRNV 88 (248)
T ss_pred eEEEe---CCCccccccHHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHH--HHHHHHHHH
Confidence 66777 456778788999999998542 3779999999999999999987 4 59999999964 999999999
Q ss_pred HHcCCcceEE--EcCC----------CCcEEEecCCCCCcc-------------------HHHHHHHHHHHhcC
Q 031506 115 EMNKLNCRLL--MTSL----------PPSHICSRVLQDQSS-------------------LRLIIIEVGIILLS 157 (158)
Q Consensus 115 ~~n~~~~~~~--~~d~----------~fD~Ii~d~iy~~~~-------------------~~~ll~tl~~ll~~ 157 (158)
+.|++..++. ..|. +||+|+|+|+|+... ++++++.-+.+|++
T Consensus 89 ~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~ 162 (248)
T COG4123 89 ALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP 162 (248)
T ss_pred HhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC
Confidence 9999875543 3332 599999999988654 55666666666554
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.47 E-value=1.4e-13 Score=107.94 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=78.8
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-------C-CCCcEEE-ecCCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-------S-LPPSHIC-SRVLQ 139 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-------d-~~fD~Ii-~d~iy 139 (158)
+.+++|||+|||-|+++..+|+.|++|+++|.++. +++.++..+..+++.+++... + .+||+|+ .+++-
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~--~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEK--PIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChH--HHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 68999999999999999999999999999999976 999999999999988655433 1 3999999 99999
Q ss_pred CCccHHHHHHHHHHHhcC
Q 031506 140 DQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 140 ~~~~~~~ll~tl~~ll~~ 157 (158)
|.++.+.+++.+..++.+
T Consensus 136 Hv~dp~~~~~~c~~lvkP 153 (243)
T COG2227 136 HVPDPESFLRACAKLVKP 153 (243)
T ss_pred ccCCHHHHHHHHHHHcCC
Confidence 999999999999999875
No 10
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.8e-13 Score=108.69 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=68.1
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcCC-
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTSL- 128 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d~- 128 (158)
|.+..|.+.+......... +|||||||||.+++.+++.+. +|+++|+|+. +++.+++|++.|++ +......|+
T Consensus 94 ~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~--Al~~A~~Na~~~~l~~~~~~~~dlf 170 (280)
T COG2890 94 PDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPD--ALALARENAERNGLVRVLVVQSDLF 170 (280)
T ss_pred CchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHH--HHHHHHHHHHHcCCccEEEEeeecc
Confidence 5677777776522111112 799999999999999998875 9999999975 99999999999996 222222244
Q ss_pred -----CCcEEEecCCCCCcc
Q 031506 129 -----PPSHICSRVLQDQSS 143 (158)
Q Consensus 129 -----~fD~Ii~d~iy~~~~ 143 (158)
+||+|+++|+|-+..
T Consensus 171 ~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 171 EPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cccCCceeEEEeCCCCCCCc
Confidence 799999999999876
No 11
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.44 E-value=1.4e-12 Score=98.32 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL----- 128 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~----- 128 (158)
.+..|.+++.. .++.+|||+|||+|..++.+++.+.+|+++|+++. +++.+++|++.++..+++...|.
T Consensus 7 d~~~l~~~l~~----~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 80 (179)
T TIGR00537 7 DSLLLEANLRE----LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPF--AVKELRENAKLNNVGLDVVMTDLFKGVR 80 (179)
T ss_pred cHHHHHHHHHh----cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHHcCCceEEEEcccccccC
Confidence 34566666543 34578999999999999999998889999999965 99999999998887665554443
Q ss_pred -CCcEEEecCCCC
Q 031506 129 -PPSHICSRVLQD 140 (158)
Q Consensus 129 -~fD~Ii~d~iy~ 140 (158)
+||+|+++++|+
T Consensus 81 ~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 81 GKFDVILFNPPYL 93 (179)
T ss_pred CcccEEEECCCCC
Confidence 799999777775
No 12
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.44 E-value=2.7e-12 Score=103.92 Aligned_cols=116 Identities=17% Similarity=0.298 Sum_probs=86.4
Q ss_pred ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 031506 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~ 112 (158)
...+.|.+.+..++|.+ +.+....+++... ..++++|||+|||+|.+++.+++.|+ +|+++|+++. +++.+++
T Consensus 127 ~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~--~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~--al~~a~~ 200 (288)
T TIGR00406 127 ALIIMLDPGLAFGTGTH--PTTSLCLEWLEDL--DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPL--AVESARK 200 (288)
T ss_pred cEEEEECCCCcccCCCC--HHHHHHHHHHHhh--cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHH--HHHHHHH
Confidence 45677777666667655 7776666666553 23678999999999999999988887 8999999975 9999999
Q ss_pred HHHHcCCcceE--EEc------CCCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506 113 VCEMNKLNCRL--LMT------SLPPSHICSRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 113 n~~~n~~~~~~--~~~------d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
|+..|++..++ ... +.+||+|+++++. ..+..++..+..+|.+
T Consensus 201 n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~--~~l~~ll~~~~~~Lkp 251 (288)
T TIGR00406 201 NAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA--EVIKELYPQFSRLVKP 251 (288)
T ss_pred HHHHcCCCcceEEEecccccccCCCceEEEEecCH--HHHHHHHHHHHHHcCC
Confidence 99999875332 221 2389999977653 3455677777777665
No 13
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.3e-12 Score=99.16 Aligned_cols=94 Identities=23% Similarity=0.263 Sum_probs=71.2
Q ss_pred CCCceEecchHHHHHHHHHh---cccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506 45 EEYGLFVWPCSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (158)
Q Consensus 45 ~~~g~~vW~~~~~la~~l~~---~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (158)
+..++-.++.---++.++.. ...++.++.|+|||||||.+|+.++.+|+ .|+++|+++ ++++.+++|+......
T Consensus 17 p~~~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~--~a~ei~r~N~~~l~g~ 94 (198)
T COG2263 17 PKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP--EALEIARANAEELLGD 94 (198)
T ss_pred CCccceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH--HHHHHHHHHHHhhCCc
Confidence 33444444444444444433 34677899999999999999999999997 899999996 4999999999997766
Q ss_pred ceEEEcCC-----CCcEEEecCCCC
Q 031506 121 CRLLMTSL-----PPSHICSRVLQD 140 (158)
Q Consensus 121 ~~~~~~d~-----~fD~Ii~d~iy~ 140 (158)
+++...|. +||.++.||+|-
T Consensus 95 v~f~~~dv~~~~~~~dtvimNPPFG 119 (198)
T COG2263 95 VEFVVADVSDFRGKFDTVIMNPPFG 119 (198)
T ss_pred eEEEEcchhhcCCccceEEECCCCc
Confidence 77666643 899888666654
No 14
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.43 E-value=1.8e-12 Score=99.28 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=71.2
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------CCCcEEE-ecCCCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------LPPSHIC-SRVLQD 140 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------~~fD~Ii-~d~iy~ 140 (158)
.++.+|||+|||+|..++.++++|.+|+++|+++. |++.+++++..+++++.....| .+||+|+ +.++++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~--~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPA--SIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHH--HHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEeccccc
Confidence 35679999999999999999999999999999965 9999999988877665443332 2799999 777765
Q ss_pred C--ccHHHHHHHHHHHhcCC
Q 031506 141 Q--SSLRLIIIEVGIILLSS 158 (158)
Q Consensus 141 ~--~~~~~ll~tl~~ll~~~ 158 (158)
. +..+.+++.+..+|.++
T Consensus 107 ~~~~~~~~~l~~~~~~Lkpg 126 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPG 126 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 4 46788899998888753
No 15
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.42 E-value=3.7e-12 Score=101.03 Aligned_cols=116 Identities=20% Similarity=0.323 Sum_probs=87.4
Q ss_pred ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 031506 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~ 112 (158)
...+.|.+.+..++|. ++.+..+.+++... ..++.+|||+|||+|.+++.+++.|+ +|+++|+++. +++.+++
T Consensus 87 ~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~--~l~~A~~ 160 (250)
T PRK00517 87 EINIELDPGMAFGTGT--HPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQ--AVEAARE 160 (250)
T ss_pred eEEEEECCCCccCCCC--CHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHH--HHHHHHH
Confidence 4557777777777776 57888888877753 24678999999999999999998887 5999999965 9999999
Q ss_pred HHHHcCCcceEEE--cCCCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506 113 VCEMNKLNCRLLM--TSLPPSHICSRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 113 n~~~n~~~~~~~~--~d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
|+..|++...+.. .+.+||+|+++... +.+..++..+...|.+
T Consensus 161 n~~~~~~~~~~~~~~~~~~fD~Vvani~~--~~~~~l~~~~~~~Lkp 205 (250)
T PRK00517 161 NAELNGVELNVYLPQGDLKADVIVANILA--NPLLELAPDLARLLKP 205 (250)
T ss_pred HHHHcCCCceEEEccCCCCcCEEEEcCcH--HHHHHHHHHHHHhcCC
Confidence 9999987533332 23479999976542 3355666777666654
No 16
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.41 E-value=5.2e-12 Score=105.84 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc----ceEEE
Q 031506 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRLLM 125 (158)
Q Consensus 52 W~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~----~~~~~ 125 (158)
=.++.+|.+++-. ..+.+|||||||+|.+|+.+++++ .+|+++|.++. +++.+++|++.|+.. +.+..
T Consensus 214 D~GtrllL~~lp~----~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~--Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 214 DIGARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPM--AVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred ChHHHHHHHhCCc----ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCcccCceEEEEE
Confidence 3566666666532 224589999999999999988874 59999999965 999999999988642 34433
Q ss_pred cC-------CCCcEEEecCCCCCcc------HHHHHHHHHHHhcC
Q 031506 126 TS-------LPPSHICSRVLQDQSS------LRLIIIEVGIILLS 157 (158)
Q Consensus 126 ~d-------~~fD~Ii~d~iy~~~~------~~~ll~tl~~ll~~ 157 (158)
.| .+||+|+++|+|+... ...+++.....|.+
T Consensus 288 ~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp 332 (378)
T PRK15001 288 NNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI 332 (378)
T ss_pred ccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc
Confidence 32 2799999999988642 35566666655543
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=4e-12 Score=97.52 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=71.2
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-------CCCcEEE-ecCCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-------LPPSHIC-SRVLQ 139 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-------~~fD~Ii-~d~iy 139 (158)
.++.+|||+|||+|..++.++++|.+|+++|+++. |++.+++++..+++. +.+...| .+||+|+ +.+++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~--~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPM--SIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLM 106 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchh
Confidence 35679999999999999999999999999999965 999999998887654 3433332 2799999 88887
Q ss_pred CCc--cHHHHHHHHHHHhcCC
Q 031506 140 DQS--SLRLIIIEVGIILLSS 158 (158)
Q Consensus 140 ~~~--~~~~ll~tl~~ll~~~ 158 (158)
+.+ ..+.+++.+..+|.++
T Consensus 107 ~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCC
Confidence 643 5788999998888753
No 18
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.38 E-value=4.6e-12 Score=104.96 Aligned_cols=99 Identities=20% Similarity=0.173 Sum_probs=74.9
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--- 127 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--- 127 (158)
.++..|.+.+.. ....+|||+|||+|.+++.+++++. +|+++|+++. |++.+++|++.|++..++...|
T Consensus 183 ~gt~lLl~~l~~----~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~--Al~~A~~nl~~n~l~~~~~~~D~~~ 256 (342)
T PRK09489 183 VGSQLLLSTLTP----HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAA--ALESSRATLAANGLEGEVFASNVFS 256 (342)
T ss_pred HHHHHHHHhccc----cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCEEEEccccc
Confidence 345555555532 2234799999999999998888753 8999999965 9999999999998876655443
Q ss_pred ---CCCcEEEecCCCCC------ccHHHHHHHHHHHhcC
Q 031506 128 ---LPPSHICSRVLQDQ------SSLRLIIIEVGIILLS 157 (158)
Q Consensus 128 ---~~fD~Ii~d~iy~~------~~~~~ll~tl~~ll~~ 157 (158)
.+||+|+++|+||. ...+.+++.....|.+
T Consensus 257 ~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp 295 (342)
T PRK09489 257 DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS 295 (342)
T ss_pred ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc
Confidence 38999998888774 3456777777777664
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.38 E-value=3.4e-12 Score=88.28 Aligned_cols=86 Identities=22% Similarity=0.273 Sum_probs=64.2
Q ss_pred CCCeEEEeccCCCHHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC--------CCcEEE-ec
Q 031506 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL--------PPSHIC-SR 136 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~--------~fD~Ii-~d 136 (158)
++.+|||||||+|..++.+++ .+++|+++|+++. |++.+++|+...+. ++++...|. +||+|+ ..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPE--MLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHH--HHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 467999999999999999998 7889999999965 99999999965544 344444443 899999 55
Q ss_pred -CCC-C--CccHHHHHHHHHHHhcC
Q 031506 137 -VLQ-D--QSSLRLIIIEVGIILLS 157 (158)
Q Consensus 137 -~iy-~--~~~~~~ll~tl~~ll~~ 157 (158)
+.. + .+....+++.+...|.+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~p 103 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKP 103 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCC
Confidence 222 1 23456677777766653
No 20
>PRK14967 putative methyltransferase; Provisional
Probab=99.38 E-value=7.9e-12 Score=97.44 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=69.3
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---- 127 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---- 127 (158)
..+..+++++.... ..++.+|||+|||+|.+++.+++.+. +|+++|+++. +++.+++|+..++..+.+...|
T Consensus 20 ~ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~--~l~~a~~n~~~~~~~~~~~~~d~~~~ 96 (223)
T PRK14967 20 EDTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRR--AVRSARLNALLAGVDVDVRRGDWARA 96 (223)
T ss_pred CcHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHH--HHHHHHHHHHHhCCeeEEEECchhhh
Confidence 46778888876532 23567999999999999999888876 9999999975 9999999999887765555443
Q ss_pred ---CCCcEEEecCCCCCc
Q 031506 128 ---LPPSHICSRVLQDQS 142 (158)
Q Consensus 128 ---~~fD~Ii~d~iy~~~ 142 (158)
.+||+|+++++|...
T Consensus 97 ~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred ccCCCeeEEEECCCCCCC
Confidence 279999988887754
No 21
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.37 E-value=6.1e-12 Score=97.02 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=66.6
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------CCCcEEEecC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------LPPSHICSRV 137 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~~fD~Ii~d~ 137 (158)
..+.+|||||||+|.+++.++.++ .+|+++|.++. +++.+++|++.+++. +.+...| .+||+|++||
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~--a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP 129 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRA--VAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP 129 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHH--HHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC
Confidence 456799999999999999654444 59999999965 999999999998763 4444332 2599999999
Q ss_pred CCCCccHHHHHHHHHH
Q 031506 138 LQDQSSLRLIIIEVGI 153 (158)
Q Consensus 138 iy~~~~~~~ll~tl~~ 153 (158)
+|.....+.+++.+..
T Consensus 130 Py~~g~~~~~l~~l~~ 145 (199)
T PRK10909 130 PFRKGLLEETINLLED 145 (199)
T ss_pred CCCCChHHHHHHHHHH
Confidence 9999888888887765
No 22
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=4.3e-12 Score=102.66 Aligned_cols=84 Identities=26% Similarity=0.290 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcc-eEEEcCC--
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC-RLLMTSL-- 128 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~~d~-- 128 (158)
++.+|.+-+ ....+.+|||||||.|.+|+.+++... +++++|.+.. +++.+|+|+..|++.. .++..+.
T Consensus 146 GS~lLl~~l----~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~--Av~~ar~Nl~~N~~~~~~v~~s~~~~ 219 (300)
T COG2813 146 GSRLLLETL----PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNAR--AVESARKNLAANGVENTEVWASNLYE 219 (300)
T ss_pred HHHHHHHhC----CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHH--HHHHHHHhHHHcCCCccEEEEecccc
Confidence 444444433 333344999999999999999999874 9999999975 9999999999999876 4554433
Q ss_pred ----CCcEEEecCCCCCcc
Q 031506 129 ----PPSHICSRVLQDQSS 143 (158)
Q Consensus 129 ----~fD~Ii~d~iy~~~~ 143 (158)
+||+|+++|++|...
T Consensus 220 ~v~~kfd~IisNPPfh~G~ 238 (300)
T COG2813 220 PVEGKFDLIISNPPFHAGK 238 (300)
T ss_pred cccccccEEEeCCCccCCc
Confidence 899999888877543
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.34 E-value=4.6e-12 Score=104.20 Aligned_cols=88 Identities=18% Similarity=0.281 Sum_probs=73.6
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEc--------CCCCcEEE-ecC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMT--------SLPPSHIC-SRV 137 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~--------d~~fD~Ii-~d~ 137 (158)
.++.+|||+|||+|.++..+++.|++|+++|.++. +++.++++...++. .+.+... +.+||+|+ .++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~--~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDK--NVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 46779999999999999999999999999999965 99999988776543 2333332 23899999 999
Q ss_pred CCCCccHHHHHHHHHHHhcCC
Q 031506 138 LQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 138 iy~~~~~~~ll~tl~~ll~~~ 158 (158)
++|..+...+++.+..+|+++
T Consensus 208 LeHv~d~~~~L~~l~r~LkPG 228 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPN 228 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCC
Confidence 999999999999999988753
No 24
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.33 E-value=1.9e-11 Score=93.46 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=67.5
Q ss_pred CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------------CCcE
Q 031506 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------------PPSH 132 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------------~fD~ 132 (158)
.+.+.+||||+||||.+|+.++++|+ +|+++|.++. +++.+++|++.+++. +.+...|. .||+
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~--a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRK--ANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceE
Confidence 45788999999999999999999998 8999999975 999999999999864 34433321 3677
Q ss_pred EEecCCCCCccHHHHHHHHH
Q 031506 133 ICSRVLQDQSSLRLIIIEVG 152 (158)
Q Consensus 133 Ii~d~iy~~~~~~~ll~tl~ 152 (158)
|+.||+|.....+.++..+.
T Consensus 125 v~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 125 IYLDPPFFNGALQALLELCE 144 (189)
T ss_pred EEECcCCCCCcHHHHHHHHH
Confidence 77999999888877776553
No 25
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.32 E-value=1.1e-11 Score=100.08 Aligned_cols=87 Identities=23% Similarity=0.237 Sum_probs=71.9
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------CCCcEEE-ecCCCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------LPPSHIC-SRVLQD 140 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------~~fD~Ii-~d~iy~ 140 (158)
.++.+|||+|||+|..++.+++.|.+|+++|.++. +++.+++|++.+++.+++...| .+||+|+ ..++++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~--ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQ--SLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999999999999999965 9999999999888766654443 3799999 777776
Q ss_pred C--ccHHHHHHHHHHHhcC
Q 031506 141 Q--SSLRLIIIEVGIILLS 157 (158)
Q Consensus 141 ~--~~~~~ll~tl~~ll~~ 157 (158)
. +..+.+++.+...|.+
T Consensus 197 l~~~~~~~~l~~~~~~Lkp 215 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNP 215 (287)
T ss_pred CCHHHHHHHHHHHHHhcCC
Confidence 4 4678889888887765
No 26
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.31 E-value=1.7e-12 Score=102.89 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=71.7
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcce---E-EEc--------CCCCcEEE-ec
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR---L-LMT--------SLPPSHIC-SR 136 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~---~-~~~--------d~~fD~Ii-~d 136 (158)
.|++|||+|||+|++++-+|+.|+.|+++|.++. |++.+++....+..... + ... ..+||.|+ ++
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~--~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDD--MVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CCceEEEeccCccccchhhHhhCCeeEeecccHH--HHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 3578999999999999999999999999999975 99999988665543211 1 111 22899999 99
Q ss_pred CCCCCccHHHHHHHHHHHhcC
Q 031506 137 VLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 137 ~iy~~~~~~~ll~tl~~ll~~ 157 (158)
++.|..+...++..+..+|.+
T Consensus 167 vleHV~dp~~~l~~l~~~lkP 187 (282)
T KOG1270|consen 167 VLEHVKDPQEFLNCLSALLKP 187 (282)
T ss_pred HHHHHhCHHHHHHHHHHHhCC
Confidence 999999999999999999876
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=2.5e-11 Score=96.36 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=73.3
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc---------CCCCcEEE-ecC
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT---------SLPPSHIC-SRV 137 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~---------d~~fD~Ii-~d~ 137 (158)
++.+|||+|||+|..++.+++.|.+|+++|+++. |++.+++++...++. +.+... +.+||+|+ .++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~--~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAE--MIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4679999999999999999999999999999965 999999999887653 333322 23899999 999
Q ss_pred CCCCccHHHHHHHHHHHhcCC
Q 031506 138 LQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 138 iy~~~~~~~ll~tl~~ll~~~ 158 (158)
+++.+....+++.+..+|.++
T Consensus 122 l~~~~~~~~~l~~~~~~Lkpg 142 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPG 142 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCC
Confidence 999988899999999988763
No 28
>PRK14968 putative methyltransferase; Provisional
Probab=99.30 E-value=6e-11 Score=89.01 Aligned_cols=86 Identities=22% Similarity=0.205 Sum_probs=68.2
Q ss_pred EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEc
Q 031506 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMT 126 (158)
Q Consensus 50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~ 126 (158)
.-|+.+..+.+++.. .++++|||+|||+|..++.+++.+.+|+++|+++. +++.+++|+..++.. +.+...
T Consensus 7 ~p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~--~~~~a~~~~~~~~~~~~~~~~~~~ 80 (188)
T PRK14968 7 EPAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPY--AVECAKCNAKLNNIRNNGVEVIRS 80 (188)
T ss_pred CcchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHH--HHHHHHHHHHHcCCCCcceEEEec
Confidence 346777888887754 35679999999999999998888899999999964 999999999888765 444444
Q ss_pred CC-------CCcEEEecCCCCC
Q 031506 127 SL-------PPSHICSRVLQDQ 141 (158)
Q Consensus 127 d~-------~fD~Ii~d~iy~~ 141 (158)
|. +||+|+++++|..
T Consensus 81 d~~~~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 81 DLFEPFRGDKFDVILFNPPYLP 102 (188)
T ss_pred cccccccccCceEEEECCCcCC
Confidence 32 6999997776654
No 29
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.29 E-value=2.1e-11 Score=103.00 Aligned_cols=87 Identities=20% Similarity=0.106 Sum_probs=68.7
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC--
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-- 128 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-- 128 (158)
|.+..+.+.+..... ++.+|||+|||+|.+++.+++. +.+|+++|+++. |++.+++|++.++.++.+...|+
T Consensus 236 peTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~--ALe~AreNa~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 236 PETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPP--ALETARKNAADLGARVEFAHGSWFD 311 (423)
T ss_pred ccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCcEEEEEcchhc
Confidence 567788888776432 4568999999999999987764 469999999965 99999999998876665554432
Q ss_pred -------CCcEEEecCCCCCcc
Q 031506 129 -------PPSHICSRVLQDQSS 143 (158)
Q Consensus 129 -------~fD~Ii~d~iy~~~~ 143 (158)
+||+|++||+|....
T Consensus 312 ~~l~~~~~FDLIVSNPPYI~~~ 333 (423)
T PRK14966 312 TDMPSEGKWDIIVSNPPYIENG 333 (423)
T ss_pred cccccCCCccEEEECCCCCCcc
Confidence 599999999997654
No 30
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.29 E-value=4.8e-11 Score=94.94 Aligned_cols=86 Identities=13% Similarity=0.017 Sum_probs=63.9
Q ss_pred chHHHHHHHHHhcccC-CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--
Q 031506 53 PCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-- 127 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~-~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-- 127 (158)
+.+..|.+.+...... ....+|||+|||+|.+++.+++. +.+|+++|+++. +++.+++|++.|+.. +...|
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~--al~~A~~N~~~~~~~--~~~~D~~ 143 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPA--AVRCARRNLADAGGT--VHEGDLY 143 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCE--EEEeech
Confidence 4567777776553221 13458999999999999987764 459999999965 999999999988743 32222
Q ss_pred --------CCCcEEEecCCCCCc
Q 031506 128 --------LPPSHICSRVLQDQS 142 (158)
Q Consensus 128 --------~~fD~Ii~d~iy~~~ 142 (158)
.+||+|++||+|...
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred hhcchhcCCCEeEEEECCCCCCc
Confidence 269999999999753
No 31
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.28 E-value=3.1e-11 Score=88.49 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=70.4
Q ss_pred CCCeEEEeccCCCHHHHHHh-hc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc-----C----CCCcEEE-e
Q 031506 70 SGANVVELGAGTSLPGLVAA-KV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT-----S----LPPSHIC-S 135 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a-~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~-----d----~~fD~Ii-~ 135 (158)
++.+|||+|||+|..+..++ +. +.+++++|+++. |++.++++++.++.. +.+... + .+||+|+ .
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~--~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEE--MIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHH--HHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHH--HHHHhhcccccccccccceEEeehhccccccCCCeeEEEEc
Confidence 56799999999999999888 44 569999999965 999999999988775 554433 2 3699999 8
Q ss_pred cCCCCCccHHHHHHHHHHHhcC
Q 031506 136 RVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 136 d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
.++++......+++.+..+|..
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~ 102 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKP 102 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEE
T ss_pred CchhhccCHHHHHHHHHHHcCC
Confidence 8899999999999998887753
No 32
>PLN02244 tocopherol O-methyltransferase
Probab=99.27 E-value=6.9e-11 Score=97.79 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=73.1
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------CCCcEEE-ec
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------LPPSHIC-SR 136 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------~~fD~Ii-~d 136 (158)
.++.+|||+|||+|..+..+++. +++|+++|+++. |++.++++++.+++. +.+...| ..||+|+ ..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~--~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPV--QAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 46789999999999999988875 789999999975 999999998887653 4444333 2799999 89
Q ss_pred CCCCCccHHHHHHHHHHHhcCC
Q 031506 137 VLQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 137 ~iy~~~~~~~ll~tl~~ll~~~ 158 (158)
+++|..+...+++.+..+|.++
T Consensus 195 ~~~h~~d~~~~l~e~~rvLkpG 216 (340)
T PLN02244 195 SGEHMPDKRKFVQELARVAAPG 216 (340)
T ss_pred chhccCCHHHHHHHHHHHcCCC
Confidence 9999999999999999888753
No 33
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.27 E-value=3.3e-11 Score=91.79 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=63.0
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC------------CCCcEE
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS------------LPPSHI 133 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d------------~~fD~I 133 (158)
+.+.++|||-||||.+|+.+.++|+ +|+++|.+.. ++..+++|++..+.. +.+...| .+||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~--a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRK--AIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HH--HHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHH--HHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence 6899999999999999999999998 9999999965 999999999987755 3444443 389999
Q ss_pred EecCCCCCccH-HHHHHHHH
Q 031506 134 CSRVLQDQSSL-RLIIIEVG 152 (158)
Q Consensus 134 i~d~iy~~~~~-~~ll~tl~ 152 (158)
+.||+|..... +.++..+.
T Consensus 119 flDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 119 FLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp EE--STTSCHHHHHHHHHHH
T ss_pred EECCCcccchHHHHHHHHHH
Confidence 99999999984 88887775
No 34
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.26 E-value=1.8e-11 Score=85.36 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=64.2
Q ss_pred CCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc----------CCCCcEEEecC
Q 031506 71 GANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT----------SLPPSHICSRV 137 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~----------d~~fD~Ii~d~ 137 (158)
|.+|||+|||+|.+.+.+++.+ .+++++|+++. +++.+++|+..++.. +++... +.+||+|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~--~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPE--AVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHH--HHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHH--HHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 4589999999999999999998 79999999965 999999999998764 444443 23899999888
Q ss_pred CCCCc---------cHHHHHHHHHHHhc
Q 031506 138 LQDQS---------SLRLIIIEVGIILL 156 (158)
Q Consensus 138 iy~~~---------~~~~ll~tl~~ll~ 156 (158)
+|... .+..+++....+|.
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~ 106 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLK 106 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcC
Confidence 88853 24566666666554
No 35
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.26 E-value=8.5e-11 Score=95.09 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=57.8
Q ss_pred CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEEecCC
Q 031506 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHICSRVL 138 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii~d~i 138 (158)
++.+|||+|||+|.+++.+++. +.+|+++|+++. +++.+++|++.+++. +.+...|. +||+|++||+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~--al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPD--ALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCC
Confidence 3568999999999999998876 359999999965 999999999998864 44444432 6999999999
Q ss_pred CCC
Q 031506 139 QDQ 141 (158)
Q Consensus 139 y~~ 141 (158)
|..
T Consensus 199 y~~ 201 (284)
T TIGR03533 199 YVD 201 (284)
T ss_pred CCC
Confidence 865
No 36
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.25 E-value=8.5e-11 Score=94.92 Aligned_cols=89 Identities=20% Similarity=0.150 Sum_probs=66.9
Q ss_pred chHHHHHHHHHhccc-CCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC
Q 031506 53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS 127 (158)
Q Consensus 53 ~~~~~la~~l~~~~~-~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d 127 (158)
|.+..+.+.+..... .....+|||+|||+|.+++.+++.. .+|+++|+++. +++.+++|++.+++. +.+...|
T Consensus 96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~--al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPD--ALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEECc
Confidence 456666666554221 1122689999999999999888764 59999999965 999999999988875 4555443
Q ss_pred C-------CCcEEEecCCCCCcc
Q 031506 128 L-------PPSHICSRVLQDQSS 143 (158)
Q Consensus 128 ~-------~fD~Ii~d~iy~~~~ 143 (158)
+ +||+|++||+|....
T Consensus 174 ~~~~~~~~~fDlIvsNPPyi~~~ 196 (284)
T TIGR00536 174 LFEPLAGQKIDIIVSNPPYIDEE 196 (284)
T ss_pred hhccCcCCCccEEEECCCCCCcc
Confidence 2 699999999987654
No 37
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.24 E-value=6.9e-11 Score=89.79 Aligned_cols=84 Identities=24% Similarity=0.344 Sum_probs=64.7
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-------CCCcEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-------LPPSHICSRVL 138 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-------~~fD~Ii~d~i 138 (158)
+++.+|||+|||+|.+++.+++.+ .+|+++|.++. |++.+++|++.+++. +++...| .+||+|+++.+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~--~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHK--KVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRAL 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHH--HHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehhh
Confidence 457899999999999999887654 48999999975 999999999888763 4444332 38999997662
Q ss_pred CCCccHHHHHHHHHHHhcC
Q 031506 139 QDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 139 y~~~~~~~ll~tl~~ll~~ 157 (158)
..++.+++.+..+|.+
T Consensus 119 ---~~~~~~~~~~~~~Lkp 134 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKV 134 (181)
T ss_pred ---hCHHHHHHHHHHhcCC
Confidence 4566777777777654
No 38
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.24 E-value=7.5e-11 Score=99.49 Aligned_cols=73 Identities=19% Similarity=0.086 Sum_probs=60.7
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcC------------CCCcEE
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTS------------LPPSHI 133 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d------------~~fD~I 133 (158)
++++|||+|||||.+++.++..|+ +|+++|+++. +++.+++|++.|++. +++...| .+||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~--al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQE--ALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 578999999999999998777776 9999999975 999999999999874 3444332 279999
Q ss_pred EecCCCCCccH
Q 031506 134 CSRVLQDQSSL 144 (158)
Q Consensus 134 i~d~iy~~~~~ 144 (158)
++||+|+...-
T Consensus 298 ilDPP~f~~~k 308 (396)
T PRK15128 298 VMDPPKFVENK 308 (396)
T ss_pred EECCCCCCCCh
Confidence 99999987653
No 39
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.23 E-value=8.7e-11 Score=96.40 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=62.9
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC------CcceEEEcC-----CCCcEEE-ec
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK------LNCRLLMTS-----LPPSHIC-SR 136 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~------~~~~~~~~d-----~~fD~Ii-~d 136 (158)
.++.+|||+|||+|.+++.+++.|.+|+++|+++. |++.+++|..... ..+++...| .+||+|+ .+
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~--ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAA--MVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 46789999999999999999999999999999975 9999999987541 223333333 4899999 89
Q ss_pred CCCCCcc--HHHHHHHHHH
Q 031506 137 VLQDQSS--LRLIIIEVGI 153 (158)
Q Consensus 137 ~iy~~~~--~~~ll~tl~~ 153 (158)
+++|.+. ...+++.+..
T Consensus 221 vL~H~p~~~~~~ll~~l~~ 239 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS 239 (315)
T ss_pred EEEecCHHHHHHHHHHHHh
Confidence 9866543 3445555543
No 40
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.20 E-value=9.7e-11 Score=105.12 Aligned_cols=86 Identities=23% Similarity=0.156 Sum_probs=69.0
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc---ceEEEcC---------CCCcEEEec
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRLLMTS---------LPPSHICSR 136 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~~d---------~~fD~Ii~d 136 (158)
++++|||||||||.+++.+++.|+ +|+++|+++. +++.+++|++.|++. +++...| .+||+|++|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~--al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNT--YLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 578999999999999999999887 7999999975 999999999999875 4455443 279999999
Q ss_pred CCCCCc------------cHHHHHHHHHHHhcC
Q 031506 137 VLQDQS------------SLRLIIIEVGIILLS 157 (158)
Q Consensus 137 ~iy~~~------------~~~~ll~tl~~ll~~ 157 (158)
|+|... .+.+++.....+|.+
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~ 648 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP 648 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC
Confidence 998753 245566666555543
No 41
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.20 E-value=2e-10 Score=98.02 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------ 127 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------ 127 (158)
+..|.+.+.+.....++.+|||+|||+|.+++.+++.+.+|+++|.++. |++.+++|++.|++. +++...|
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~--al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEA--MVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHH--HHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 4667776665444446789999999999999999998899999999975 999999999988763 4444332
Q ss_pred ------CCCcEEEecCCCCCccHHHHHHHHHH
Q 031506 128 ------LPPSHICSRVLQDQSSLRLIIIEVGI 153 (158)
Q Consensus 128 ------~~fD~Ii~d~iy~~~~~~~ll~tl~~ 153 (158)
.+||+|++||+|... .++++.+..
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~--~~~~~~l~~ 389 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA--AEVMQALAK 389 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh--HHHHHHHHh
Confidence 259999999999862 355555544
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.20 E-value=2.5e-10 Score=89.05 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=79.4
Q ss_pred HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc---------C
Q 031506 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---------S 127 (158)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---------d 127 (158)
...+|+.......++.+|||+|||+|.++..+++.+++++++|.++. +++.+++|+..++....+... +
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEE--NIEVARLHALESGLKIDYRQTTAEELAAEHP 112 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHH--HHHHHHHHHHHcCCceEEEecCHHHhhhhcC
Confidence 33456666555567889999999999999999998999999999965 899999988876655444332 2
Q ss_pred CCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506 128 LPPSHIC-SRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 128 ~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
.+||+|+ +.++.+..+...+++.+..+|.+
T Consensus 113 ~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~ 143 (233)
T PRK05134 113 GQFDVVTCMEMLEHVPDPASFVRACAKLVKP 143 (233)
T ss_pred CCccEEEEhhHhhccCCHHHHHHHHHHHcCC
Confidence 3899999 88999988999999999888764
No 43
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.20 E-value=4e-11 Score=79.73 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=64.5
Q ss_pred EEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE-ecCCCCCccH
Q 031506 75 VELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC-SRVLQDQSSL 144 (158)
Q Consensus 75 LELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii-~d~iy~~~~~ 144 (158)
||+|||+|..+..+++. +.+|+++|.++. +++.++++....+.. +... +..||+|+ ..++++.+..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~--~~~~~~~~~~~~~~~--~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE--MLEQARKRLKNEGVS--FRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH--HHHHHHHHTTTSTEE--EEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH--HHHHHHhcccccCch--heeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999998 779999999965 999999988766544 3333 33899999 9999999999
Q ss_pred HHHHHHHHHHhcC
Q 031506 145 RLIIIEVGIILLS 157 (158)
Q Consensus 145 ~~ll~tl~~ll~~ 157 (158)
..+++.+..+|++
T Consensus 77 ~~~l~e~~rvLk~ 89 (95)
T PF08241_consen 77 EAALREIYRVLKP 89 (95)
T ss_dssp HHHHHHHHHHEEE
T ss_pred HHHHHHHHHHcCc
Confidence 9999999998875
No 44
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.19 E-value=1.3e-10 Score=89.17 Aligned_cols=86 Identities=23% Similarity=0.249 Sum_probs=65.3
Q ss_pred CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-ecCCC
Q 031506 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-SRVLQ 139 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~d~iy 139 (158)
..++.++||||||.|.-++.+|++|.+|+++|.++. +++.+++-++..+++++....|. .||+|+ .-+++
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~--al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPV--ALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHH--HHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHH--HHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEec
Confidence 346789999999999999999999999999999975 89999888888888887776653 799999 44544
Q ss_pred C--CccHHHHHHHHHHHh
Q 031506 140 D--QSSLRLIIIEVGIIL 155 (158)
Q Consensus 140 ~--~~~~~~ll~tl~~ll 155 (158)
+ .+..+.+++.+..-+
T Consensus 106 fL~~~~~~~i~~~m~~~~ 123 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAAT 123 (192)
T ss_dssp GS-GGGHHHHHHHHHHTE
T ss_pred cCCHHHHHHHHHHHHhhc
Confidence 3 455677777776543
No 45
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=2.9e-10 Score=92.95 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=56.5
Q ss_pred CeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEEecCCCC
Q 031506 72 ANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHICSRVLQD 140 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii~d~iy~ 140 (158)
.+|||+|||+|.+++.+++. +.+|+++|+++. +++.+++|++.+++. +.+...|. +||+|++||+|.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~--al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPD--ALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCC
Confidence 68999999999999988876 359999999965 999999999998764 44444432 699999999886
Q ss_pred C
Q 031506 141 Q 141 (158)
Q Consensus 141 ~ 141 (158)
.
T Consensus 213 ~ 213 (307)
T PRK11805 213 D 213 (307)
T ss_pred C
Confidence 4
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.18 E-value=4.4e-10 Score=85.89 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=65.1
Q ss_pred CCCeEEEeccCCCHHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-------CCCcEEEecCCC
Q 031506 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-------LPPSHICSRVLQ 139 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-------~~fD~Ii~d~iy 139 (158)
++.+|||+|||+|..++.+++ .+.+|+++|.++. |++.+++|++.+++. +.+...| .+||+|+++.+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~--~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGK--KIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHH--HHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 378999999999999998775 3469999999975 999999999998874 4443332 27999996543
Q ss_pred CCccHHHHHHHHHHHhcC
Q 031506 140 DQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 140 ~~~~~~~ll~tl~~ll~~ 157 (158)
..++.+++.+..+|.+
T Consensus 122 --~~~~~~l~~~~~~Lkp 137 (187)
T PRK00107 122 --ASLSDLVELCLPLLKP 137 (187)
T ss_pred --cCHHHHHHHHHHhcCC
Confidence 4567888888877765
No 47
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.18 E-value=3.1e-10 Score=87.98 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=66.6
Q ss_pred CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC-----CCCcEEE-ecCCC
Q 031506 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS-----LPPSHIC-SRVLQ 139 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d-----~~fD~Ii-~d~iy 139 (158)
..++.+|||+|||+|.++..+++.+.+|+++|+++. |++.+++++..++. .+.+...| .+||+|+ +++++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~--~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQ--MVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 346789999999999999999988889999999965 99999999887664 34444444 3799999 89986
Q ss_pred CCc--cHHHHHHHHHHHh
Q 031506 140 DQS--SLRLIIIEVGIIL 155 (158)
Q Consensus 140 ~~~--~~~~ll~tl~~ll 155 (158)
+.+ ....+++.+..++
T Consensus 131 ~~~~~~~~~~l~~i~~~~ 148 (219)
T TIGR02021 131 HYPASDMAKALGHLASLT 148 (219)
T ss_pred hCCHHHHHHHHHHHHHHh
Confidence 643 3556666665543
No 48
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.17 E-value=2.5e-10 Score=95.63 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=66.2
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------CCCcEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------LPPSHICSRVL 138 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~~fD~Ii~d~i 138 (158)
..+.+|||||||+|.+++.++..+.+|+++|.++. +++.+++|++.|++. +.+...| .+||+|+.||+
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~--av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESE--AIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHH--HHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 35679999999999999999998899999999965 999999999999873 4444433 15999999999
Q ss_pred CCCccHHHHHHHHHH
Q 031506 139 QDQSSLRLIIIEVGI 153 (158)
Q Consensus 139 y~~~~~~~ll~tl~~ 153 (158)
|. ...+.+++.+..
T Consensus 310 r~-G~~~~~l~~l~~ 323 (374)
T TIGR02085 310 RR-GIGKELCDYLSQ 323 (374)
T ss_pred CC-CCcHHHHHHHHh
Confidence 86 555666666654
No 49
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.17 E-value=2e-10 Score=90.72 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=66.8
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEc---CCCCcEEE-ecCCCCCccH
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMT---SLPPSHIC-SRVLQDQSSL 144 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~---d~~fD~Ii-~d~iy~~~~~ 144 (158)
+..+|||+|||+|..+..+++.+.+|+++|+++. |++.++++...... ..++... +..||+|+ +.++.+..+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~--~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPP--MLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHH--HHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 5678999999999999988888999999999965 99988887542211 1111111 23799999 8888888899
Q ss_pred HHHHHHHHHHhcC
Q 031506 145 RLIIIEVGIILLS 157 (158)
Q Consensus 145 ~~ll~tl~~ll~~ 157 (158)
..+++.+..+|.+
T Consensus 120 ~~~l~~~~~~Lk~ 132 (251)
T PRK10258 120 STALRELYRVVRP 132 (251)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988875
No 50
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.17 E-value=4.6e-10 Score=87.99 Aligned_cols=89 Identities=22% Similarity=0.141 Sum_probs=68.7
Q ss_pred EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc
Q 031506 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT 126 (158)
Q Consensus 50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~ 126 (158)
..++.+..+.+.+..... ..+.+|||+|||+|.+++.+++. +.+++++|+++. +++.+++|+..+++. +.+...
T Consensus 68 ~p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~--~~~~a~~~~~~~~~~~~~~~~~ 144 (251)
T TIGR03534 68 IPRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPE--ALAVARKNAARLGLDNVTFLQS 144 (251)
T ss_pred cCCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCCCeEEEEEC
Confidence 345777777777765432 24568999999999999988876 459999999965 999999999988764 444443
Q ss_pred C-------CCCcEEEecCCCCC
Q 031506 127 S-------LPPSHICSRVLQDQ 141 (158)
Q Consensus 127 d-------~~fD~Ii~d~iy~~ 141 (158)
| .+||+|+++|+|..
T Consensus 145 d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 145 DWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred chhccCcCCceeEEEECCCCCc
Confidence 3 27999999888875
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.17 E-value=3.3e-10 Score=97.14 Aligned_cols=88 Identities=13% Similarity=0.025 Sum_probs=71.0
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRVL 138 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~i 138 (158)
.++.+|||+|||+|..++.+++. +.+|+++|+++. +++.+++|.......+.+...| .+||+|+ .+++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~--~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVN--MISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence 35679999999999999977764 679999999964 9999998876444344444433 2699999 8999
Q ss_pred CCCccHHHHHHHHHHHhcCC
Q 031506 139 QDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 139 y~~~~~~~ll~tl~~ll~~~ 158 (158)
+|..+.+.+++.++.+|.++
T Consensus 343 ~h~~d~~~~l~~~~r~Lkpg 362 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPG 362 (475)
T ss_pred cccCCHHHHHHHHHHHcCCC
Confidence 99999999999999988763
No 52
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.17 E-value=3.2e-10 Score=92.82 Aligned_cols=81 Identities=12% Similarity=0.041 Sum_probs=64.5
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------CCCcEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------LPPSHICSRVL 138 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~~fD~Ii~d~i 138 (158)
.++.+|||+|||+|.+++.+++.+.+|+++|+++. +++.+++|++.|++. +++...| .+||+|+.||+
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~--av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAE--AIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHH--HHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 35689999999999999999999999999999965 999999999999874 5554443 26999999998
Q ss_pred CCCccHHHHHHHHH
Q 031506 139 QDQSSLRLIIIEVG 152 (158)
Q Consensus 139 y~~~~~~~ll~tl~ 152 (158)
+.. ..+.+++.+.
T Consensus 250 r~G-~~~~~~~~l~ 262 (315)
T PRK03522 250 RRG-IGKELCDYLS 262 (315)
T ss_pred CCC-ccHHHHHHHH
Confidence 653 3455555544
No 53
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.17 E-value=4e-10 Score=92.69 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=74.1
Q ss_pred ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHc--CCcceEEEc-
Q 031506 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN--KLNCRLLMT- 126 (158)
Q Consensus 51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~~- 126 (158)
-|++-.... .+..+...+++++|||+|||+|..+..++..|+ .|+++|.++. ++...+...+.. ..++.+...
T Consensus 104 ew~s~~k~~-~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~--~l~q~~a~~~~~~~~~~i~~~~~d 180 (322)
T PRK15068 104 EWRSDWKWD-RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQL--FLCQFEAVRKLLGNDQRAHLLPLG 180 (322)
T ss_pred eehHHhHHH-HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHH--HHHHHHHHHHhcCCCCCeEEEeCC
Confidence 465444322 233333456789999999999999998888887 6999999864 665433322221 223444433
Q ss_pred ------CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506 127 ------SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 127 ------d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~ 158 (158)
+.+||+|+ ..++||..+...+++.++..|.++
T Consensus 181 ~e~lp~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpG 219 (322)
T PRK15068 181 IEQLPALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPG 219 (322)
T ss_pred HHHCCCcCCcCEEEECChhhccCCHHHHHHHHHHhcCCC
Confidence 23799999 899999999999999999988753
No 54
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.17 E-value=4.1e-10 Score=92.37 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=68.4
Q ss_pred ccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHH--HcCCcceEEEc-------CCCCcEEE-
Q 031506 66 RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE--MNKLNCRLLMT-------SLPPSHIC- 134 (158)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~--~n~~~~~~~~~-------d~~fD~Ii- 134 (158)
....++++|||+|||+|.....++..|+ .|+++|.++. |+..++...+ .+...+.+... ...||+|+
T Consensus 117 l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~--ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s 194 (314)
T TIGR00452 117 LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVL--FLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFS 194 (314)
T ss_pred cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHH--HHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEE
Confidence 3456789999999999999998888887 7999999975 7765433222 12222333322 12899999
Q ss_pred ecCCCCCccHHHHHHHHHHHhcCC
Q 031506 135 SRVLQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 135 ~d~iy~~~~~~~ll~tl~~ll~~~ 158 (158)
..++||..+....++.++..|.++
T Consensus 195 ~gvL~H~~dp~~~L~el~r~LkpG 218 (314)
T TIGR00452 195 MGVLYHRKSPLEHLKQLKHQLVIK 218 (314)
T ss_pred cchhhccCCHHHHHHHHHHhcCCC
Confidence 999999999999999999988764
No 55
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.17 E-value=1.6e-10 Score=84.13 Aligned_cols=81 Identities=22% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEE------EcCCCCcEEE-ecCCCC
Q 031506 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL------MTSLPPSHIC-SRVLQD 140 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~------~~d~~fD~Ii-~d~iy~ 140 (158)
..++.+|||+|||+|..+..+++.|.+++++|+++. +++. .+ ...... ..+.+||+|+ +++++|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~--~~~~------~~-~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQ--MIEK------RN-VVFDNFDAQDPPFPDGSFDLIICNDVLEH 90 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHH--HHHH------TT-SEEEEEECHTHHCHSSSEEEEEEESSGGG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHH--HHhh------hh-hhhhhhhhhhhhccccchhhHhhHHHHhh
Confidence 457789999999999999999999999999999975 7766 11 111111 1134999999 999999
Q ss_pred CccHHHHHHHHHHHhcC
Q 031506 141 QSSLRLIIIEVGIILLS 157 (158)
Q Consensus 141 ~~~~~~ll~tl~~ll~~ 157 (158)
.++...+++.+..+|.+
T Consensus 91 ~~d~~~~l~~l~~~Lkp 107 (161)
T PF13489_consen 91 LPDPEEFLKELSRLLKP 107 (161)
T ss_dssp SSHHHHHHHHHHHCEEE
T ss_pred cccHHHHHHHHHHhcCC
Confidence 99999999999998764
No 56
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.16 E-value=3.9e-10 Score=89.80 Aligned_cols=89 Identities=22% Similarity=0.138 Sum_probs=67.5
Q ss_pred cchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHH-cCCcceEEEcC-
Q 031506 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRLLMTS- 127 (158)
Q Consensus 52 W~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~~d- 127 (158)
.+.+..+.+++.......++.+|||+|||+|.+++.+++.. .+|+++|+++. +++.+++|+.. ...++.+...|
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~--~l~~a~~n~~~~~~~~i~~~~~d~ 167 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPE--ALAVARRNAKHGLGARVEFLQGDW 167 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHhCCCCcEEEEEccc
Confidence 46677888877754444467799999999999999888765 59999999975 99999999982 22234444433
Q ss_pred ------CCCcEEEecCCCCCc
Q 031506 128 ------LPPSHICSRVLQDQS 142 (158)
Q Consensus 128 ------~~fD~Ii~d~iy~~~ 142 (158)
.+||+|+++|+|...
T Consensus 168 ~~~~~~~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 168 FEPLPGGRFDLIVSNPPYIPE 188 (275)
T ss_pred cCcCCCCceeEEEECCCcCCc
Confidence 379999999988754
No 57
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.16 E-value=4.4e-10 Score=92.52 Aligned_cols=99 Identities=17% Similarity=0.019 Sum_probs=74.8
Q ss_pred HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcc-eEEEcC--------
Q 031506 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RLLMTS-------- 127 (158)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~~d-------- 127 (158)
.++..+.+.....++.+|||.|||||.+.+.++..+.+|+++|+++. |+..++.|++.+++.. .+...|
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~--~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWK--MVAGARINLEHYGIEDFFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHH--HHHHHHHHHHHhCCCCCeEEecchhcCCccc
Confidence 45555554333346779999999999999998889999999999965 9999999999877642 443332
Q ss_pred CCCcEEEecCCCCCc----------cHHHHHHHHHHHhcC
Q 031506 128 LPPSHICSRVLQDQS----------SLRLIIIEVGIILLS 157 (158)
Q Consensus 128 ~~fD~Ii~d~iy~~~----------~~~~ll~tl~~ll~~ 157 (158)
.+||+|++||+|... .+..+++.+...|.+
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~ 286 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS 286 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC
Confidence 379999999998642 256777777776653
No 58
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.15 E-value=2.2e-10 Score=99.47 Aligned_cols=71 Identities=18% Similarity=0.131 Sum_probs=57.2
Q ss_pred CCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEEecCCC
Q 031506 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHICSRVLQ 139 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii~d~iy 139 (158)
+.+|||+|||+|.+++.+++. +++|+++|+++. +++.+++|++.+++. +.+...|+ +||+|+++|+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~--al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLD--AIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHH--HHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCC
Confidence 468999999999999977764 469999999965 999999999988764 44444332 69999999998
Q ss_pred CCcc
Q 031506 140 DQSS 143 (158)
Q Consensus 140 ~~~~ 143 (158)
....
T Consensus 217 i~~~ 220 (506)
T PRK01544 217 ISHS 220 (506)
T ss_pred CCch
Confidence 8643
No 59
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.15 E-value=4.4e-10 Score=90.54 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC--
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-- 128 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-- 128 (158)
+.....+++++.....+|.+|||+|||.|.+++.+++. |++|+++.+|+. ..+.+++.++..++. +.+...|.
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~--Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEE--QAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HH--HHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 44555666776666678999999999999999988877 999999999964 889999999988875 34444433
Q ss_pred ---CCcEEE-ecCCCCC--ccHHHHHHHHHHHhcCC
Q 031506 129 ---PPSHIC-SRVLQDQ--SSLRLIIIEVGIILLSS 158 (158)
Q Consensus 129 ---~fD~Ii-~d~iy~~--~~~~~ll~tl~~ll~~~ 158 (158)
+||.|+ ...+.+. ..++.+++.+..+|.++
T Consensus 124 ~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred cCCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 999999 8999887 68899999999998763
No 60
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.15 E-value=1.7e-10 Score=94.74 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=73.8
Q ss_pred HHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceE-------EEcCC---CC
Q 031506 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRL-------LMTSL---PP 130 (158)
Q Consensus 62 l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~-------~~~d~---~f 130 (158)
+.++...++++.|||+|||||++++.+|+.|+ +|+++|.+. +.+.+++.+..|++...+ +...+ +.
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~---ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKV 128 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS---IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKV 128 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH---HHHHHHHHHHhcCccceEEEeecceEEEecCccce
Confidence 44556678999999999999999999999998 999999986 778999999999876432 22222 79
Q ss_pred cEEEecCCCCCccHHHHHHHHHH
Q 031506 131 SHICSRVLQDQSSLRLIIIEVGI 153 (158)
Q Consensus 131 D~Ii~d~iy~~~~~~~ll~tl~~ 153 (158)
|+|+++..-|.-.++.+++++-+
T Consensus 129 DiIvSEWMGy~Ll~EsMldsVl~ 151 (346)
T KOG1499|consen 129 DIIVSEWMGYFLLYESMLDSVLY 151 (346)
T ss_pred eEEeehhhhHHHHHhhhhhhhhh
Confidence 99999999888888888888754
No 61
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.14 E-value=3e-10 Score=84.91 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=59.6
Q ss_pred HHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC--------CCcE
Q 031506 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL--------PPSH 132 (158)
Q Consensus 61 ~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~--------~fD~ 132 (158)
.+.+.....++.+|||+|||+|.++..+++++.+|+++|+++. +++.+++|+..+. ++++...|. .||+
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~--~~~~~~~~~~~~~-~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPR--LAPRLREKFAAAD-NLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHH--HHHHHHHHhccCC-CEEEEECchhcCCccccCCCE
Confidence 3444333346679999999999999999988889999999975 9999999886422 344443322 4899
Q ss_pred EEecCCCCCc
Q 031506 133 ICSRVLQDQS 142 (158)
Q Consensus 133 Ii~d~iy~~~ 142 (158)
|+++++|+..
T Consensus 81 vi~n~Py~~~ 90 (169)
T smart00650 81 VVGNLPYNIS 90 (169)
T ss_pred EEECCCcccH
Confidence 9999999863
No 62
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.14 E-value=5.6e-10 Score=88.37 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=66.3
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-------CCCCcEEE-ecCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-------SLPPSHIC-SRVL 138 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-------d~~fD~Ii-~d~i 138 (158)
.++.+|||+|||+|.++..+++. +.+|+++|+++. |++.++++... +.+... +.+||+|+ +.++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~--~i~~a~~~~~~----~~~~~~d~~~~~~~~~fD~v~~~~~l 103 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPA--MLAEARSRLPD----CQFVEADIASWQPPQALDLIFANASL 103 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHhCCC----CeEEECchhccCCCCCccEEEEccCh
Confidence 46789999999999999988775 469999999975 99998887531 222222 23899999 8888
Q ss_pred CCCccHHHHHHHHHHHhcCC
Q 031506 139 QDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 139 y~~~~~~~ll~tl~~ll~~~ 158 (158)
.+..+...+++.+...|.++
T Consensus 104 ~~~~d~~~~l~~~~~~Lkpg 123 (258)
T PRK01683 104 QWLPDHLELFPRLVSLLAPG 123 (258)
T ss_pred hhCCCHHHHHHHHHHhcCCC
Confidence 88888899999999888753
No 63
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.14 E-value=3.8e-10 Score=89.48 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=65.7
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-------CCCCcEEE-ecCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-------SLPPSHIC-SRVL 138 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-------d~~fD~Ii-~d~i 138 (158)
.++.+|||+|||+|.++..+++. +.+|+++|+++. |++.++++ + +++... +.+||+|+ +.++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~--~~~~a~~~----~--~~~~~~d~~~~~~~~~fD~v~~~~~l 99 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPE--MVAAARER----G--VDARTGDVRDWKPKPDTDVVVSNAAL 99 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHhc----C--CcEEEcChhhCCCCCCceEEEEehhh
Confidence 46789999999999999988877 569999999965 99887653 2 222222 33899999 8999
Q ss_pred CCCccHHHHHHHHHHHhcCC
Q 031506 139 QDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 139 y~~~~~~~ll~tl~~ll~~~ 158 (158)
++.++...+++.+...|.++
T Consensus 100 ~~~~d~~~~l~~~~~~Lkpg 119 (255)
T PRK14103 100 QWVPEHADLLVRWVDELAPG 119 (255)
T ss_pred hhCCCHHHHHHHHHHhCCCC
Confidence 99889999999999888753
No 64
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.13 E-value=2.3e-10 Score=94.11 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=58.1
Q ss_pred CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHc-CCcce--EEE-c------------CCCCc
Q 031506 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCR--LLM-T------------SLPPS 131 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n-~~~~~--~~~-~------------d~~fD 131 (158)
.+.++||||||+|.+..+++.+ +.+++++|+++. +++.+++|++.| ++..+ +.. . +.+||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~--Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQ--ALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHH--HHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 4578999999999777766543 569999999965 999999999999 66533 221 1 22799
Q ss_pred EEEecCCCCCccHHH
Q 031506 132 HICSRVLQDQSSLRL 146 (158)
Q Consensus 132 ~Ii~d~iy~~~~~~~ 146 (158)
+|+|+|+|+....+.
T Consensus 192 livcNPPf~~s~~ea 206 (321)
T PRK11727 192 ATLCNPPFHASAAEA 206 (321)
T ss_pred EEEeCCCCcCcchhh
Confidence 999999999876553
No 65
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.13 E-value=4.1e-10 Score=90.06 Aligned_cols=103 Identities=9% Similarity=0.011 Sum_probs=74.8
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---- 127 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---- 127 (158)
|++..-+..+.......++.+|||+|||+|..+..+++ .+.+|+++|+++. |++.++++.... ..+.+...|
T Consensus 35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~--~~~~a~~~~~~~-~~i~~~~~D~~~~ 111 (263)
T PTZ00098 35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEK--MVNIAKLRNSDK-NKIEFEANDILKK 111 (263)
T ss_pred CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHH--HHHHHHHHcCcC-CceEEEECCcccC
Confidence 44444455555544445678999999999999987765 4679999999965 999888876542 223333332
Q ss_pred ----CCCcEEE-ecCCCCCc--cHHHHHHHHHHHhcCC
Q 031506 128 ----LPPSHIC-SRVLQDQS--SLRLIIIEVGIILLSS 158 (158)
Q Consensus 128 ----~~fD~Ii-~d~iy~~~--~~~~ll~tl~~ll~~~ 158 (158)
.+||+|+ .+++++.. ....+++.+..+|.++
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG 149 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN 149 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC
Confidence 3799999 78887764 7889999999988764
No 66
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.12 E-value=2.2e-10 Score=78.47 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=62.8
Q ss_pred EEEeccCCCHHHHHHhhcC-----CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC--------CCcEEE-ecC-C
Q 031506 74 VVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL--------PPSHIC-SRV-L 138 (158)
Q Consensus 74 vLELG~GtGl~~i~~a~~g-----~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~--------~fD~Ii-~d~-i 138 (158)
|||+|||+|.....+++.. .+++++|+++. |++.++++....+.++++...|. +||+|+ +.. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~--~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPE--MLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HH--HHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHH--HHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999888764 69999999965 99999999988777777776654 899999 555 5
Q ss_pred CCC--ccHHHHHHHHHHHhcC
Q 031506 139 QDQ--SSLRLIIIEVGIILLS 157 (158)
Q Consensus 139 y~~--~~~~~ll~tl~~ll~~ 157 (158)
.|. +....+++.+..++.+
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCC
Confidence 443 3578888888877653
No 67
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.12 E-value=1e-11 Score=84.58 Aligned_cols=82 Identities=16% Similarity=0.119 Sum_probs=55.9
Q ss_pred EEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-c---eEEEcC-------CCCcEEE-ecCCCC
Q 031506 75 VELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-C---RLLMTS-------LPPSHIC-SRVLQD 140 (158)
Q Consensus 75 LELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~---~~~~~d-------~~fD~Ii-~d~iy~ 140 (158)
||+|||+|.++..+... +.+++++|+++. |++.+++++...... . +....+ .+||+|+ +.++++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPS--MLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSS--TTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999977776 569999999987 998777777765532 1 111111 2899999 999999
Q ss_pred CccHHHHHHHHHHHhcCC
Q 031506 141 QSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 141 ~~~~~~ll~tl~~ll~~~ 158 (158)
.+..+.+++.++.+|.++
T Consensus 79 l~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS
T ss_pred hhhHHHHHHHHHHHcCCC
Confidence 999999999999888763
No 68
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.11 E-value=5.7e-10 Score=86.49 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=64.4
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC-----CCCcEEE-ecCCCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS-----LPPSHIC-SRVLQD 140 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d-----~~fD~Ii-~d~iy~ 140 (158)
.++.+|||+|||+|..+..+++.+.+|+++|+++. |++.++++....+. .+.+...| ..||+|+ .+++.+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~--~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQ--MVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 45679999999999999999998899999999965 99999999887665 34444443 3799999 888855
Q ss_pred C--ccHHHHHHHHHHH
Q 031506 141 Q--SSLRLIIIEVGII 154 (158)
Q Consensus 141 ~--~~~~~ll~tl~~l 154 (158)
. +....+++.+..+
T Consensus 140 ~~~~~~~~~l~~l~~~ 155 (230)
T PRK07580 140 YPQEDAARMLAHLASL 155 (230)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 3 3455566555543
No 69
>PLN02672 methionine S-methyltransferase
Probab=99.10 E-value=3.4e-10 Score=104.87 Aligned_cols=89 Identities=21% Similarity=0.141 Sum_probs=68.8
Q ss_pred chHHHHHHHHHhccc-CCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCC----------
Q 031506 53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL---------- 119 (158)
Q Consensus 53 ~~~~~la~~l~~~~~-~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~---------- 119 (158)
|.++.|.+.+...+. .+++.+|||+|||+|.+++.+++.. .+|+++|+++. +++.+++|++.|++
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~--Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPR--AVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCccccccccccc
Confidence 677888888544332 2456799999999999999888764 48999999965 99999999998753
Q ss_pred -------cceEEEcCC---------CCcEEEecCCCCCcc
Q 031506 120 -------NCRLLMTSL---------PPSHICSRVLQDQSS 143 (158)
Q Consensus 120 -------~~~~~~~d~---------~fD~Ii~d~iy~~~~ 143 (158)
++++...|+ +||+|+++|+|-...
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~ 217 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNP 217 (1082)
T ss_pred ccccccccEEEEECchhhhccccCCceEEEEECCCcCCCc
Confidence 234444443 499999999998654
No 70
>PRK08317 hypothetical protein; Provisional
Probab=99.10 E-value=1.8e-09 Score=83.25 Aligned_cols=102 Identities=16% Similarity=0.089 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---- 127 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---- 127 (158)
...+-+.+.......++.+|||+|||+|..+..+++.. .+++++|.++. +++.++++.......+.+...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~--~~~~a~~~~~~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 4 FRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA--MLALAKERAAGLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHHHHhhCCCCceEEEecccccC
Confidence 33344444444444567899999999999999777653 58999999975 8888888844333334444332
Q ss_pred ----CCCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506 128 ----LPPSHIC-SRVLQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 128 ----~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~ 158 (158)
.+||+|+ ..++.+..+...+++.+..+|.++
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g 117 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG 117 (241)
T ss_pred CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCC
Confidence 2799999 899988889999999999888753
No 71
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.10 E-value=2.9e-10 Score=87.16 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=58.8
Q ss_pred CeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-------CCcEEE-ecCCCCCcc
Q 031506 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-------PPSHIC-SRVLQDQSS 143 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-------~fD~Ii-~d~iy~~~~ 143 (158)
.++||+|||.|.++..+|.++.+++++|+++. +++.+++.+... -.+.+...+. +||+|+ ++++||...
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~--Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPR--ALARARERLAGL-PHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HH--HHHHHHHHTTT--SSEEEEES-TTT---SS-EEEEEEES-GGGSSS
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHH--HHHHHHHhcCCC-CCeEEEECcCCCCCCCCCeeEEEEehHhHcCCC
Confidence 47999999999999999999889999999975 999999888743 2455555532 899999 999999987
Q ss_pred HHHHHHHHHHH
Q 031506 144 LRLIIIEVGII 154 (158)
Q Consensus 144 ~~~ll~tl~~l 154 (158)
.+++-..+..+
T Consensus 122 ~~~L~~~l~~l 132 (201)
T PF05401_consen 122 AEDLRAALDRL 132 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655555444
No 72
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.09 E-value=1.6e-09 Score=84.21 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=68.5
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc--------CCCCcEEE-e
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT--------SLPPSHIC-S 135 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~--------d~~fD~Ii-~ 135 (158)
.++.+|||+|||+|..+..+++. +.+|+++|+++. +++.+++|+..++.. +.+... +.+||+|+ .
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN--MLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 35789999999999999988764 349999999964 999999998766542 333322 23799999 8
Q ss_pred cCCCCCccHHHHHHHHHHHhcC
Q 031506 136 RVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 136 d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
.++.+.+....+++.+..+|.+
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKP 143 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCc
Confidence 8888888888999988887765
No 73
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.09 E-value=3.1e-09 Score=80.53 Aligned_cols=85 Identities=16% Similarity=0.060 Sum_probs=63.3
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------CCCcEEEecCCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------LPPSHICSRVLQ 139 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------~~fD~Ii~d~iy 139 (158)
.++.+|||+|||+|.+++.+++.+ .+|+++|.++. +++.+++|++.+++. +++...+ .+||+|+++-.
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~--~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~- 106 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPD--ALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGS- 106 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCC-
Confidence 367799999999999999888764 49999999965 999999999887653 4443332 27999994322
Q ss_pred CCccHHHHHHHHHHHhcC
Q 031506 140 DQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 140 ~~~~~~~ll~tl~~ll~~ 157 (158)
...+..+++.+...|.+
T Consensus 107 -~~~~~~~l~~~~~~Lk~ 123 (187)
T PRK08287 107 -GGNLTAIIDWSLAHLHP 123 (187)
T ss_pred -ccCHHHHHHHHHHhcCC
Confidence 23456777777776654
No 74
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.09 E-value=1.4e-09 Score=84.10 Aligned_cols=87 Identities=22% Similarity=0.247 Sum_probs=72.4
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcC---------CCCcEEE-ecC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTS---------LPPSHIC-SRV 137 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d---------~~fD~Ii-~d~ 137 (158)
.++.+|||+|||+|..+..+++.+.+++++|.++. +++.+++|+..++. .+++...+ .+||+|+ ..+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~--~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEE--NIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHH--HHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 46789999999999999988888889999999965 99999999887765 34443321 3799999 889
Q ss_pred CCCCccHHHHHHHHHHHhcC
Q 031506 138 LQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 138 iy~~~~~~~ll~tl~~ll~~ 157 (158)
+++......+++.+..+|.+
T Consensus 122 l~~~~~~~~~l~~~~~~L~~ 141 (224)
T TIGR01983 122 LEHVPDPQAFIRACAQLLKP 141 (224)
T ss_pred HHhCCCHHHHHHHHHHhcCC
Confidence 99999999999998887754
No 75
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.07 E-value=1.9e-09 Score=82.07 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=65.0
Q ss_pred CCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC-----------CCcEE
Q 031506 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL-----------PPSHI 133 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~-----------~fD~I 133 (158)
.+.+.++|||-||+|.+|+.+.++|+ .++++|.+.. ++..+++|++.-+. .+++...|- +||+|
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~--a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRK--AVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHH--HHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEE
Confidence 47899999999999999999999988 9999999975 99999999998774 344443321 49999
Q ss_pred EecCCCCCccHHHHHH
Q 031506 134 CSRVLQDQSSLRLIII 149 (158)
Q Consensus 134 i~d~iy~~~~~~~ll~ 149 (158)
+.||+|.....+..+.
T Consensus 119 flDPPy~~~l~~~~~~ 134 (187)
T COG0742 119 FLDPPYAKGLLDKELA 134 (187)
T ss_pred EeCCCCccchhhHHHH
Confidence 9999999666644433
No 76
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.06 E-value=5.9e-09 Score=72.76 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=65.6
Q ss_pred HHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------C
Q 031506 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------L 128 (158)
Q Consensus 61 ~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~ 128 (158)
++.......++.+|||+|||+|..+..+++.. .+|+++|+++. +++.+++|++.++.. +.+...| .
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPE--ALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHH--HHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 33333333356799999999999999888763 58999999975 999999999877653 3332221 2
Q ss_pred CCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506 129 PPSHIC-SRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 129 ~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
+||+|+ ..+. ....++++.+...|.+
T Consensus 88 ~~D~v~~~~~~---~~~~~~l~~~~~~Lk~ 114 (124)
T TIGR02469 88 EPDRVFIGGSG---GLLQEILEAIWRRLRP 114 (124)
T ss_pred CCCEEEECCcc---hhHHHHHHHHHHHcCC
Confidence 799999 4332 3456788888887764
No 77
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.06 E-value=2.7e-09 Score=85.30 Aligned_cols=88 Identities=17% Similarity=0.078 Sum_probs=68.1
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHH--c--CCcceEEEcC--------CCCcEE
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEM--N--KLNCRLLMTS--------LPPSHI 133 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~--n--~~~~~~~~~d--------~~fD~I 133 (158)
.++.+|||+|||||..+..+++. + .+|+++|+++. |++.++++... . ..++.+...| ..||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~--ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSE--QLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 35779999999999999988765 3 48999999965 99998876542 1 1123333332 279999
Q ss_pred E-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506 134 C-SRVLQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 134 i-~d~iy~~~~~~~ll~tl~~ll~~~ 158 (158)
+ +..+.+.++...+++.+..+|.++
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLkpG 175 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLKPG 175 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcC
Confidence 9 899999999999999999988764
No 78
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.06 E-value=1.3e-09 Score=84.49 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-- 127 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-- 127 (158)
.+..+..++.+.....++.+|||+|||+|..+..+++... +|+++|+++. +++.+++|++.+++. +.+...|
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~--~~~~A~~~~~~~g~~~v~~~~~d~~ 138 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPE--LAEKAERRLRKLGLDNVIVIVGDGT 138 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHCCCCCeEEEECCcc
Confidence 3334444555444445778999999999999998888744 5999999965 999999999988763 4444333
Q ss_pred ------CCCcEEEe
Q 031506 128 ------LPPSHICS 135 (158)
Q Consensus 128 ------~~fD~Ii~ 135 (158)
.+||+|+.
T Consensus 139 ~~~~~~~~fD~Ii~ 152 (215)
T TIGR00080 139 QGWEPLAPYDRIYV 152 (215)
T ss_pred cCCcccCCCCEEEE
Confidence 27999993
No 79
>PRK05785 hypothetical protein; Provisional
Probab=99.04 E-value=5.3e-10 Score=87.62 Aligned_cols=83 Identities=17% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc---CCCCcEEE-ecCCCCCccHH
Q 031506 71 GANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---SLPPSHIC-SRVLQDQSSLR 145 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---d~~fD~Ii-~d~iy~~~~~~ 145 (158)
+.+|||+|||||..+..+++. +.+|+++|.++. |++.++++.. .....+... +..||+|+ +..+.+.++.+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~--Ml~~a~~~~~--~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAEN--MLKMNLVADD--KVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHH--HHHHHHhccc--eEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 679999999999999988887 579999999965 9998776421 111111111 34899999 89999999999
Q ss_pred HHHHHHHHHhcC
Q 031506 146 LIIIEVGIILLS 157 (158)
Q Consensus 146 ~ll~tl~~ll~~ 157 (158)
.+++.+...|.+
T Consensus 128 ~~l~e~~RvLkp 139 (226)
T PRK05785 128 KVIAEFTRVSRK 139 (226)
T ss_pred HHHHHHHHHhcC
Confidence 999999888753
No 80
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.03 E-value=3.1e-09 Score=84.03 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=73.8
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc--------CCCCcEEE-ecC
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT--------SLPPSHIC-SRV 137 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~--------d~~fD~Ii-~d~ 137 (158)
+|.+|||+|||||-.++.+++.. .+|+++|+++. |++.+++.+...+.. +.+... |..||+|. +=.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~--ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISES--MLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHH--HHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 78899999999999999988875 59999999976 999999998864433 443333 44899999 999
Q ss_pred CCCCccHHHHHHHHHHHhcCC
Q 031506 138 LQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 138 iy~~~~~~~ll~tl~~ll~~~ 158 (158)
+-+..+.+..|+++...|+++
T Consensus 129 lrnv~d~~~aL~E~~RVlKpg 149 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPG 149 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCC
Confidence 999999999999999998864
No 81
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.02 E-value=1.8e-09 Score=85.50 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=66.8
Q ss_pred CCCeEEEeccCCCHHHHHHhh----cCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC------CCcEEE-ec
Q 031506 70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL------PPSHIC-SR 136 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~----~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~------~fD~Ii-~d 136 (158)
++.+|||+|||+|..++.+++ .+.+|+++|.++. |++.+++|+..++. ++.+...|. .+|+|+ +-
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~--ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPA--MIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHH--HHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 567999999999999987765 2469999999965 99999999987665 345544432 689999 66
Q ss_pred CCCCCc--cHHHHHHHHHHHhcCC
Q 031506 137 VLQDQS--SLRLIIIEVGIILLSS 158 (158)
Q Consensus 137 ~iy~~~--~~~~ll~tl~~ll~~~ 158 (158)
++.+.+ ....+++.+...|.++
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpG 157 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPG 157 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCC
Confidence 666553 3467889988888753
No 82
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.02 E-value=3.3e-09 Score=89.18 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=69.7
Q ss_pred HHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----CCCCcEEE-
Q 031506 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----SLPPSHIC- 134 (158)
Q Consensus 62 l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----d~~fD~Ii- 134 (158)
+.+.....++.+|||+|||+|.+++.+++. |.+|+++|+++. +++.+++++. ++.+.+... +.+||.|+
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~--~l~~A~~~~~--~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAE--QQKLAQERCA--GLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHhc--cCeEEEEECchhhcCCCCCEEEE
Confidence 333333446789999999999999977764 779999999965 9999998884 333443333 34899999
Q ss_pred ecCCCCC--ccHHHHHHHHHHHhcCC
Q 031506 135 SRVLQDQ--SSLRLIIIEVGIILLSS 158 (158)
Q Consensus 135 ~d~iy~~--~~~~~ll~tl~~ll~~~ 158 (158)
...+.+. ...+.+++.+..+|.++
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~LkpG 260 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKPD 260 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCCC
Confidence 7777775 34678899998888753
No 83
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.01 E-value=2.2e-09 Score=83.15 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=69.0
Q ss_pred CeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-------CCCcEEE-ecCCC
Q 031506 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-------LPPSHIC-SRVLQ 139 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-------~~fD~Ii-~d~iy 139 (158)
++|||+|||+|..+..+++.. .+|+++|+++. +++.+++++...++. +.+...| .+||+|+ ..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~--~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPE--QAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHH
Confidence 479999999999999877753 59999999864 999999999877654 2333322 2799999 89999
Q ss_pred CCccHHHHHHHHHHHhcCC
Q 031506 140 DQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 140 ~~~~~~~ll~tl~~ll~~~ 158 (158)
+..+.+.+++.+..+|.++
T Consensus 79 ~~~~~~~~l~~~~~~Lkpg 97 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDG 97 (224)
T ss_pred hCCCHHHHHHHHHHHcCCC
Confidence 9999999999999988763
No 84
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.00 E-value=3.6e-09 Score=84.54 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=67.8
Q ss_pred CCCeEEEeccCCCHHHHHHhhc-CC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc--------CCCCcEEE-ec
Q 031506 70 SGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT--------SLPPSHIC-SR 136 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~-g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~--------d~~fD~Ii-~d 136 (158)
++.+|||+|||+|..++.+++. +. +|+++|.++. |++.+++|...++.. +.+... +..||+|+ ..
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~--~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPE--MLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHH--HHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 6789999999999988866653 43 7999999965 999999998876652 333322 22799999 66
Q ss_pred CCCCCccHHHHHHHHHHHhcCC
Q 031506 137 VLQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 137 ~iy~~~~~~~ll~tl~~ll~~~ 158 (158)
++++....+.+++.+..+|.++
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpG 176 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPG 176 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCC
Confidence 7777788889999999888753
No 85
>PRK06202 hypothetical protein; Provisional
Probab=99.00 E-value=1.8e-09 Score=84.41 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=61.9
Q ss_pred CCCeEEEeccCCCHHHHHHhh----cC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc------CCCCcEEE-ec
Q 031506 70 SGANVVELGAGTSLPGLVAAK----VG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT------SLPPSHIC-SR 136 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~----~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~------d~~fD~Ii-~d 136 (158)
++.+|||+|||+|.++..+++ .| .+|+++|+++. |++.++++...+++....... +.+||+|+ +.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR--AVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH--HHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 567999999999999887764 23 49999999975 999998887655544332211 34899999 88
Q ss_pred CCCCCcc--HHHHHHHHHHHh
Q 031506 137 VLQDQSS--LRLIIIEVGIIL 155 (158)
Q Consensus 137 ~iy~~~~--~~~ll~tl~~ll 155 (158)
+++|.++ ...+++.+..++
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~ 158 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALA 158 (232)
T ss_pred eeecCChHHHHHHHHHHHHhc
Confidence 9988766 345777766544
No 86
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.00 E-value=2.1e-09 Score=84.81 Aligned_cols=102 Identities=19% Similarity=0.124 Sum_probs=67.7
Q ss_pred eEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCC-cceEE
Q 031506 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLL 124 (158)
Q Consensus 49 ~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~ 124 (158)
.+.|.. .+.+.+ ...++.+|||+|||||.+++.+++. + .+|+++|+++. |++.+++++...+. ++++.
T Consensus 32 ~~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~--ML~~a~~k~~~~~~~~i~~v 103 (233)
T PF01209_consen 32 DRRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG--MLEVARKKLKREGLQNIEFV 103 (233)
T ss_dssp -----S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH--HHHHHHHHHHHTT--SEEEE
T ss_pred HHHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH--HHHHHHHHHHhhCCCCeeEE
Confidence 467876 344433 2335779999999999999988765 3 48999999965 99999999887654 45554
Q ss_pred Ec--------CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506 125 MT--------SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 125 ~~--------d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~ 158 (158)
.. |..||+|+ +=.+.+.++.+..++.+..+|+++
T Consensus 104 ~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG 146 (233)
T PF01209_consen 104 QGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPG 146 (233)
T ss_dssp E-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE
T ss_pred EcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC
Confidence 44 33899999 989988889999999999988753
No 87
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=4.3e-09 Score=84.93 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=77.8
Q ss_pred HHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-----CCc
Q 031506 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-----PPS 131 (158)
Q Consensus 60 ~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-----~fD 131 (158)
+.+++.....+|.+|||+|||-|.+++.+|+. |.+|+++++|+. +.+.+++.+...++. +++.-.|+ +||
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~--Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD 139 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEE--QLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD 139 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHH--HHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence 34455555668999999999999999988876 789999999975 999999999988876 44443443 799
Q ss_pred EEE-ecCCCCCcc--HHHHHHHHHHHhcC
Q 031506 132 HIC-SRVLQDQSS--LRLIIIEVGIILLS 157 (158)
Q Consensus 132 ~Ii-~d~iy~~~~--~~~ll~tl~~ll~~ 157 (158)
-|+ ...+-|... ++..++.+..+|..
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~ 168 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKP 168 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCC
Confidence 999 899877665 99999999888764
No 88
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.2e-09 Score=78.71 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=70.5
Q ss_pred cccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC--------CCcEEEe
Q 031506 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL--------PPSHICS 135 (158)
Q Consensus 65 ~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~--------~fD~Ii~ 135 (158)
.-.++.|++++|||||||.+++.++..+. .|+++|+++ ++++..++|+....+++++.+.+. .||..+.
T Consensus 43 TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 43 TYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred hhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCH--HHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEe
Confidence 34578999999999999999988888877 899999996 499999999998877766665532 7999996
Q ss_pred cCCCCCcc----------HHHHHHHHHHHhcCC
Q 031506 136 RVLQDQSS----------LRLIIIEVGIILLSS 158 (158)
Q Consensus 136 d~iy~~~~----------~~~ll~tl~~ll~~~ 158 (158)
||+|-... .-.+.+.+.+|+++|
T Consensus 121 NppFGTk~~~aDm~fv~~al~~~~~VySLHKtS 153 (185)
T KOG3420|consen 121 NPPFGTKKKGADMEFVSAALKVASAVYSLHKTS 153 (185)
T ss_pred cCCCCcccccccHHHHHHHHHHHHHHHHHhccc
Confidence 66665432 224455666666654
No 89
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.99 E-value=7.3e-09 Score=79.88 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-- 127 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-- 127 (158)
+..+..++.+.....++.+|||+|||+|..+..+++. +.+|+++|+++. +++.+++|++.++.. +.+...|
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~--~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKE--LAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 3344455554433346789999999999999877764 359999999965 999999999988764 4444332
Q ss_pred ------CCCcEEEec
Q 031506 128 ------LPPSHICSR 136 (158)
Q Consensus 128 ------~~fD~Ii~d 136 (158)
.+||+|+++
T Consensus 135 ~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 135 RGLEKHAPFDAIIVT 149 (205)
T ss_pred cCCccCCCccEEEEc
Confidence 279999943
No 90
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.99 E-value=4.8e-09 Score=89.20 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------ 127 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------ 127 (158)
+..|.+.+.+.....++.+|||+|||+|.+++.+++.+.+|+++|.++. +++.+++|++.|++. +.+...|
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~--av~~a~~n~~~~~~~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPE--SVEKAQQNAELNGIANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHH--HHHHHHHHHHHhCCCceEEEeCCHHHHHH
Confidence 3344444444332335579999999999999999998889999999965 999999999998863 4444332
Q ss_pred ------CCCcEEEecCCCCCccHHHHHHHHHH
Q 031506 128 ------LPPSHICSRVLQDQSSLRLIIIEVGI 153 (158)
Q Consensus 128 ------~~fD~Ii~d~iy~~~~~~~ll~tl~~ 153 (158)
..||+|+.||++. ...+.+++.+..
T Consensus 355 ~~~~~~~~~D~vi~dPPr~-G~~~~~l~~l~~ 385 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRK-GCAAEVLRTIIE 385 (431)
T ss_pred HHHhcCCCCCEEEECcCCC-CCCHHHHHHHHh
Confidence 2589999999985 334556665543
No 91
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.99 E-value=4.2e-09 Score=87.96 Aligned_cols=95 Identities=16% Similarity=0.059 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS----- 127 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d----- 127 (158)
.+..|.+++...... .+.++|||+||+|.+|+.+++...+|+++|.++. +++.+++|+..|++. +.+...|
T Consensus 191 ~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~--ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 191 VNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARNFRRVLATEISKP--SVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhhCCEEEEEECCHH--HHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 355666666553221 2357999999999999998888779999999975 999999999999874 4443321
Q ss_pred -------------------CCCcEEEecCCCCCccHHHHHHHHH
Q 031506 128 -------------------LPPSHICSRVLQDQSSLRLIIIEVG 152 (158)
Q Consensus 128 -------------------~~fD~Ii~d~iy~~~~~~~ll~tl~ 152 (158)
.+||+|+.||+| ....+.+++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G~~~~~l~~l~ 310 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AGLDDETLKLVQ 310 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCC-CCCcHHHHHHHH
Confidence 148999999997 455677777664
No 92
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.99 E-value=7.9e-09 Score=79.76 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS----- 127 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d----- 127 (158)
....+..++.......++.+|||+|||+|..+..+++.+.+|+++|.++. +++.+++|++.+++. +.+...|
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKT--LQWEAKRRLKQLGLHNVSVRHGDGWKGW 139 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHH--HHHHHHHHHHHCCCCceEEEECCcccCC
Confidence 33444455544444456789999999999999988888779999999964 999999999887653 4443332
Q ss_pred ---CCCcEEEec
Q 031506 128 ---LPPSHICSR 136 (158)
Q Consensus 128 ---~~fD~Ii~d 136 (158)
.+||+|+++
T Consensus 140 ~~~~~fD~I~~~ 151 (212)
T PRK00312 140 PAYAPFDRILVT 151 (212)
T ss_pred CcCCCcCEEEEc
Confidence 279999933
No 93
>PHA03412 putative methyltransferase; Provisional
Probab=98.98 E-value=1.5e-09 Score=85.61 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=56.1
Q ss_pred HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-----CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc------
Q 031506 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT------ 126 (158)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-----g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~------ 126 (158)
+|+++... ...+.+|||+|||+|.+++.++++ ..+|+++|+++. +++.+++|... +.+...
T Consensus 39 iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~--Al~~Ar~n~~~----~~~~~~D~~~~~ 110 (241)
T PHA03412 39 LARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT--YYKLGKRIVPE----ATWINADALTTE 110 (241)
T ss_pred HHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH--HHHHHHhhccC----CEEEEcchhccc
Confidence 55555322 224679999999999999987763 348999999975 99999988642 222222
Q ss_pred -CCCCcEEEecCCCCCc
Q 031506 127 -SLPPSHICSRVLQDQS 142 (158)
Q Consensus 127 -d~~fD~Ii~d~iy~~~ 142 (158)
+.+||+||++|+|...
T Consensus 111 ~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 111 FDTLFDMAISNPPFGKI 127 (241)
T ss_pred ccCCccEEEECCCCCCc
Confidence 3379999999999853
No 94
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.98 E-value=3.5e-09 Score=84.48 Aligned_cols=83 Identities=16% Similarity=0.092 Sum_probs=62.4
Q ss_pred HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------CC
Q 031506 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------PP 130 (158)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------~f 130 (158)
-+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++. +++.+++++... -++.+...|. .|
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~--~~~~l~~~~~~~-~~v~ii~~D~~~~~~~~~ 92 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPR--LAEFLRDDEIAA-GNVEIIEGDALKVDLPEF 92 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHH--HHHHHHHHhccC-CCEEEEEeccccCCchhc
Confidence 34455555444456789999999999999999998889999999976 999999887642 1344443332 67
Q ss_pred cEEEecCCCCCc
Q 031506 131 SHICSRVLQDQS 142 (158)
Q Consensus 131 D~Ii~d~iy~~~ 142 (158)
|.|+++++|+..
T Consensus 93 d~Vv~NlPy~i~ 104 (258)
T PRK14896 93 NKVVSNLPYQIS 104 (258)
T ss_pred eEEEEcCCcccC
Confidence 988888889875
No 95
>PRK04148 hypothetical protein; Provisional
Probab=98.97 E-value=3e-09 Score=77.15 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=45.6
Q ss_pred HHHHHHHhcccCCCCCeEEEeccCCCH-HHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 031506 57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (158)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl-~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n 113 (158)
.+++|+.++....+++++||+|||+|. ++..+++.|.+|+++|+++. .++.++++
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~--aV~~a~~~ 58 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEK--AVEKAKKL 58 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHH--HHHHHHHh
Confidence 477888776555567899999999996 99999999999999999975 77776655
No 96
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.97 E-value=1.8e-08 Score=77.16 Aligned_cols=87 Identities=20% Similarity=0.168 Sum_probs=64.6
Q ss_pred cCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcC---------CCCcE
Q 031506 67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTS---------LPPSH 132 (158)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d---------~~fD~ 132 (158)
...++.+|||+|||+|.+++.+++. +.+|+++|.++. +++.+++|++.+++ ++.+...| ..||+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~--~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEK--AINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 4457789999999999999987764 358999999965 99999999998874 23333222 26999
Q ss_pred EEecCCCCCccHHHHHHHHHHHhcC
Q 031506 133 ICSRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 133 Ii~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
|++.. ....+..+++.+..+|.+
T Consensus 115 V~~~~--~~~~~~~~l~~~~~~Lkp 137 (198)
T PRK00377 115 IFIGG--GSEKLKEIISASWEIIKK 137 (198)
T ss_pred EEECC--CcccHHHHHHHHHHHcCC
Confidence 99533 344567778877777654
No 97
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.97 E-value=5.9e-09 Score=86.79 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------ 127 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------ 127 (158)
...|.+++.+... ..+.+|||||||+|.+++.+++...+|+++|.++. +++.+++|++.|++. +.+...|
T Consensus 183 ~~~l~~~v~~~~~-~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~--av~~a~~n~~~~~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 183 NIKMLEWACEVTQ-GSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKP--SVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred HHHHHHHHHHHhh-cCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHH--HHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence 4455555544322 12347999999999999999988789999999965 999999999999873 3433221
Q ss_pred ------------------CCCcEEEecCCCCCccHHHHHHHHH
Q 031506 128 ------------------LPPSHICSRVLQDQSSLRLIIIEVG 152 (158)
Q Consensus 128 ------------------~~fD~Ii~d~iy~~~~~~~ll~tl~ 152 (158)
.+||+|+.||+ .....+.+++.+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R~G~~~~~l~~l~ 301 (353)
T TIGR02143 260 AMNGVREFRRLKGIDLKSYNCSTIFVDPP-RAGLDPDTCKLVQ 301 (353)
T ss_pred HHhhccccccccccccccCCCCEEEECCC-CCCCcHHHHHHHH
Confidence 13799999999 4566677766653
No 98
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.97 E-value=3.5e-09 Score=84.80 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=64.7
Q ss_pred hHHHHHHHHHh---cccCCCCCeEEEeccCCCHHHHHHh-hcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--
Q 031506 54 CSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAA-KVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-- 126 (158)
Q Consensus 54 ~~~~la~~l~~---~~~~~~~~~vLELG~GtGl~~i~~a-~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-- 126 (158)
.++.+.+++.. +..-+++..+||+|||+|..++.++ ..+. .|+|+|.++. ++..+.+|++.+++..+++..
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~--Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA--AIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHH--HHHHHHHHHHHHhhcCceEEEec
Confidence 34555565544 2334466689999999999999554 4443 8999999986 999999999999876554432
Q ss_pred -------------CCCCcEEEecCCCCCcc
Q 031506 127 -------------SLPPSHICSRVLQDQSS 143 (158)
Q Consensus 127 -------------d~~fD~Ii~d~iy~~~~ 143 (158)
+.++|+|+++|+|-...
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~d 236 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKD 236 (328)
T ss_pred ccccccccccccccCceeEEecCCCccccc
Confidence 12899999999987543
No 99
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.95 E-value=5.3e-09 Score=84.06 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=60.5
Q ss_pred HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------C--
Q 031506 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------P-- 129 (158)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------~-- 129 (158)
+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++. |++.+++|... .++.+...|. .
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~--~~~~~~~~~~~--~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRD--LAPILAETFAE--DNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHH--HHHHHHHhhcc--CceEEEEChhhcCCHHHcC
Confidence 4455555444456789999999999999999998889999999975 99999887753 2344444433 2
Q ss_pred CcEEEecCCCCCc
Q 031506 130 PSHICSRVLQDQS 142 (158)
Q Consensus 130 fD~Ii~d~iy~~~ 142 (158)
++.|+++++|+..
T Consensus 106 ~~~vv~NlPY~is 118 (272)
T PRK00274 106 PLKVVANLPYNIT 118 (272)
T ss_pred cceEEEeCCccch
Confidence 4677788999875
No 100
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.94 E-value=6.4e-09 Score=80.37 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=65.5
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE-ecC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC-SRV 137 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii-~d~ 137 (158)
..+.+|||+|||+|..+..+++.+. +++++|.++. +++.++.+... ++.+... +.+||+|+ +.+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~--~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAG--MLAQAKTKLSE---NVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHH--HHHHHHHhcCC---CCeEEecchhhCCCCCCceeEEEEhhh
Confidence 3457899999999999998888764 6899999964 88877766542 2333322 23799999 999
Q ss_pred CCCCccHHHHHHHHHHHhcC
Q 031506 138 LQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 138 iy~~~~~~~ll~tl~~ll~~ 157 (158)
+++..+...+++.+..+|.+
T Consensus 108 l~~~~~~~~~l~~~~~~L~~ 127 (240)
T TIGR02072 108 LQWCDDLSQALSELARVLKP 127 (240)
T ss_pred hhhccCHHHHHHHHHHHcCC
Confidence 99998999999999888765
No 101
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.94 E-value=3.6e-09 Score=81.77 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=56.8
Q ss_pred CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-------CCCCcEEE-ecCCC
Q 031506 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-------SLPPSHIC-SRVLQ 139 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-------d~~fD~Ii-~d~iy 139 (158)
++.+|||+|||+|..+..+++. +.+++++|+++. |++.+++|... ..+... +.+||+|+ ..+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~--~l~~A~~~~~~----~~~~~~d~~~~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEY--AVEKAKAYLPN----INIIQGSLFDPFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHH--HHHHHHhhCCC----CcEEEeeccCCCCCCCEEEEEECChhh
Confidence 5678999999999999988776 569999999965 99999887531 122221 33899999 89888
Q ss_pred CCc--cHHHHHHHHHH
Q 031506 140 DQS--SLRLIIIEVGI 153 (158)
Q Consensus 140 ~~~--~~~~ll~tl~~ 153 (158)
|.. ....+++.+..
T Consensus 117 hl~p~~~~~~l~el~r 132 (204)
T TIGR03587 117 HINPDNLPTAYRELYR 132 (204)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 764 34445554443
No 102
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.94 E-value=1.5e-08 Score=78.38 Aligned_cols=86 Identities=19% Similarity=0.132 Sum_probs=68.8
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--------CCCcEEE-e
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS--------LPPSHIC-S 135 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d--------~~fD~Ii-~ 135 (158)
++.+|||+|||+|..+..+++.+ .+++++|+++. +++.+++|+..++.. +.+...| ..||+|+ +
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG--MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 56799999999999999887765 69999999975 999999998764332 3333322 2799999 8
Q ss_pred cCCCCCccHHHHHHHHHHHhcC
Q 031506 136 RVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 136 d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
.++.+......+++.+..+|..
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~ 150 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKP 150 (239)
T ss_pred cccccCCCHHHHHHHHHHhccC
Confidence 8888888999999998887764
No 103
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.93 E-value=6e-09 Score=84.84 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=65.2
Q ss_pred HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC------C
Q 031506 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL------P 129 (158)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~------~ 129 (158)
+.+.+.......++.+|||+|||+|.++..+++.+.+|+++|+++. +++.+++|+..++. ++.+...|. .
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~--li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPR--MVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHH--HHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 4445555444456789999999999999999988889999999975 99999999886552 344444433 6
Q ss_pred CcEEEecCCCCCcc
Q 031506 130 PSHICSRVLQDQSS 143 (158)
Q Consensus 130 fD~Ii~d~iy~~~~ 143 (158)
||.|+++++|+...
T Consensus 102 ~d~VvaNlPY~Ist 115 (294)
T PTZ00338 102 FDVCVANVPYQISS 115 (294)
T ss_pred cCEEEecCCcccCc
Confidence 89888999999775
No 104
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=1.5e-08 Score=86.32 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=57.5
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----------CCCcEEEec
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS----------LPPSHICSR 136 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d----------~~fD~Ii~d 136 (158)
.++.+|||+|||+|..++.+++.+ .+|+++|.++. +++.+++|++.+++.+.+...| .+||.|++|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~--~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQ--RLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHH--HHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 367899999999999999887764 49999999975 9999999999988765554433 259999988
Q ss_pred CCCC
Q 031506 137 VLQD 140 (158)
Q Consensus 137 ~iy~ 140 (158)
++|.
T Consensus 321 ~Pcs 324 (427)
T PRK10901 321 APCS 324 (427)
T ss_pred CCCC
Confidence 8765
No 105
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.92 E-value=1.7e-08 Score=82.11 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=70.4
Q ss_pred ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHH--HHHHHHHcCCcceEE--E
Q 031506 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKN--MRRVCEMNKLNCRLL--M 125 (158)
Q Consensus 51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~--~~~n~~~n~~~~~~~--~ 125 (158)
-|.+-..-.. +..+...++|++|||+|||.|..+..++..|+ .|+++|-+.. .+-+ +-++...+....... +
T Consensus 97 EWrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l--f~~QF~~i~~~lg~~~~~~~lplg 173 (315)
T PF08003_consen 97 EWRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL--FYLQFEAIKHFLGQDPPVFELPLG 173 (315)
T ss_pred cccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH--HHHHHHHHHHHhCCCccEEEcCcc
Confidence 3554433322 33444578999999999999999999999998 7999999864 2221 111222111111111 1
Q ss_pred c-----CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506 126 T-----SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 126 ~-----d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
. ...||+|+ .-++||..+.-..|+.++..|.+
T Consensus 174 vE~Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~ 211 (315)
T PF08003_consen 174 VEDLPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRP 211 (315)
T ss_pred hhhccccCCcCEEEEeeehhccCCHHHHHHHHHHhhCC
Confidence 1 23899999 99999999999999998887764
No 106
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.91 E-value=1.6e-08 Score=78.50 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-- 127 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-- 127 (158)
.+..+..++.+.....++.+|||+|||+|..+..+++.. .+|+++|.++. +++.+++|++.++.. +.+...|
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~--~~~~a~~~l~~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPE--LAEKAKKTLKKLGYDNVEVIVGDGT 137 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCCeEEEECCcc
Confidence 445555656554445578899999999999999887653 49999999965 999999999987753 4554443
Q ss_pred ------CCCcEEEe
Q 031506 128 ------LPPSHICS 135 (158)
Q Consensus 128 ------~~fD~Ii~ 135 (158)
.+||+|++
T Consensus 138 ~~~~~~~~fD~I~~ 151 (212)
T PRK13942 138 LGYEENAPYDRIYV 151 (212)
T ss_pred cCCCcCCCcCEEEE
Confidence 27999993
No 107
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.91 E-value=1.3e-08 Score=79.94 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=65.7
Q ss_pred CCCeEEEeccCCCHHHHHHhhc----CCEEEEEecCChHHHHHHHHHHHHHcCC--cceEEEcCC------CCcEEE-ec
Q 031506 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRLLMTSL------PPSHIC-SR 136 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~----g~~v~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~~d~------~fD~Ii-~d 136 (158)
++.+|||+|||+|..++.+++. +.+++++|+++. |++.+++++...+. ++++...|. .+|+|+ ..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~--ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQP--MVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHH--HHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeec
Confidence 5679999999999999977764 568999999965 99999999876543 345544433 689988 77
Q ss_pred CCCCCc--cHHHHHHHHHHHhcC
Q 031506 137 VLQDQS--SLRLIIIEVGIILLS 157 (158)
Q Consensus 137 ~iy~~~--~~~~ll~tl~~ll~~ 157 (158)
++.+.. ....+++.+...|.+
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~Lkp 153 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNP 153 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCC
Confidence 776653 356788888887765
No 108
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.91 E-value=8.6e-09 Score=84.81 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=67.5
Q ss_pred cccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----C----CCCcEEE
Q 031506 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----S----LPPSHIC 134 (158)
Q Consensus 65 ~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----d----~~fD~Ii 134 (158)
+..+++++.|||+|||+|+++..+++.|+ +|.+++-++ |.+.+++-++.|.+..++... | .+.|+||
T Consensus 172 N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~---MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviI 248 (517)
T KOG1500|consen 172 NHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE---MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVII 248 (517)
T ss_pred cccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH---HHHHHHHHHhcCCccceEEEccCccccccCchhccEEE
Confidence 34688999999999999999999999998 999999975 999999999999876655433 2 2899999
Q ss_pred ecCCCCCccHHHHHHH
Q 031506 135 SRVLQDQSSLRLIIIE 150 (158)
Q Consensus 135 ~d~iy~~~~~~~ll~t 150 (158)
++|+-+.-.-+.++.+
T Consensus 249 SEPMG~mL~NERMLEs 264 (517)
T KOG1500|consen 249 SEPMGYMLVNERMLES 264 (517)
T ss_pred eccchhhhhhHHHHHH
Confidence 9998665555555554
No 109
>PHA03411 putative methyltransferase; Provisional
Probab=98.91 E-value=5.9e-09 Score=83.94 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=59.5
Q ss_pred CceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEE
Q 031506 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL 124 (158)
Q Consensus 47 ~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (158)
.|...=|.+++ ..|+.. .....+|||+|||+|.+++.++++ +.+|+++|+++. |++.+++|.. .+.+.
T Consensus 45 ~G~FfTP~~i~-~~f~~~---~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~--al~~Ar~n~~----~v~~v 114 (279)
T PHA03411 45 SGAFFTPEGLA-WDFTID---AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE--FARIGKRLLP----EAEWI 114 (279)
T ss_pred ceeEcCCHHHH-HHHHhc---cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHhCc----CCEEE
Confidence 45555566653 344432 123468999999999999987765 459999999975 9999888753 23333
Q ss_pred EcC-------CCCcEEEecCCCCCc
Q 031506 125 MTS-------LPPSHICSRVLQDQS 142 (158)
Q Consensus 125 ~~d-------~~fD~Ii~d~iy~~~ 142 (158)
..| .+||+|+++|+|+..
T Consensus 115 ~~D~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 115 TSDVFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred ECchhhhcccCCCcEEEEcCCcccc
Confidence 332 379999988887763
No 110
>PRK04266 fibrillarin; Provisional
Probab=98.89 E-value=4.9e-08 Score=76.70 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=67.6
Q ss_pred CCceEecch------HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHc
Q 031506 46 EYGLFVWPC------SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN 117 (158)
Q Consensus 46 ~~g~~vW~~------~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n 117 (158)
+.++++|.. +..++.+ +.....++.+|||+|||||..++.+++.. .+|+++|.++. |++.+.++++..
T Consensus 44 ~~~~~~~~~~r~~~~~~ll~~~--~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~--ml~~l~~~a~~~ 119 (226)
T PRK04266 44 GVEYREWNPRRSKLAAAILKGL--KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPR--PMRELLEVAEER 119 (226)
T ss_pred CcEEEEECCCccchHHHHHhhH--hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHH--HHHHHHHHhhhc
Confidence 455677743 4444443 12233467899999999999999888763 48999999975 888777776642
Q ss_pred CCcceEEEc-----------CCCCcEEEecCCCCCccHHHHHHHHHHHhcCC
Q 031506 118 KLNCRLLMT-----------SLPPSHICSRVLQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 118 ~~~~~~~~~-----------d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~~ 158 (158)
.++..... ..+||+|++|... +.....+++.+..+|+++
T Consensus 120 -~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~-p~~~~~~L~~~~r~LKpG 169 (226)
T PRK04266 120 -KNIIPILADARKPERYAHVVEKVDVIYQDVAQ-PNQAEIAIDNAEFFLKDG 169 (226)
T ss_pred -CCcEEEECCCCCcchhhhccccCCEEEECCCC-hhHHHHHHHHHHHhcCCC
Confidence 11222211 2268998855332 223344577777777653
No 111
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.8e-08 Score=78.03 Aligned_cols=86 Identities=19% Similarity=0.141 Sum_probs=69.1
Q ss_pred CceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEE
Q 031506 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLM 125 (158)
Q Consensus 47 ~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~ 125 (158)
.|.-.|-++..+...+.+.....++.+|||+|||||..+-.+|+...+|+.+|..+. ..+.+++|++..+. ++.+..
T Consensus 49 i~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~--L~~~A~~~L~~lg~~nV~v~~ 126 (209)
T COG2518 49 IGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEE--LAEQARRNLETLGYENVTVRH 126 (209)
T ss_pred CCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHH--HHHHHHHHHHHcCCCceEEEE
Confidence 344456666666666666555567899999999999999999999889999999964 88999999999887 466665
Q ss_pred cCC--------CCcEEE
Q 031506 126 TSL--------PPSHIC 134 (158)
Q Consensus 126 ~d~--------~fD~Ii 134 (158)
.|. +||.|+
T Consensus 127 gDG~~G~~~~aPyD~I~ 143 (209)
T COG2518 127 GDGSKGWPEEAPYDRII 143 (209)
T ss_pred CCcccCCCCCCCcCEEE
Confidence 553 899999
No 112
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.88 E-value=1e-08 Score=84.95 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=66.9
Q ss_pred CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE-ecCC
Q 031506 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC-SRVL 138 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii-~d~i 138 (158)
.+.+|||+|||+|..++.+++. +.+|+++|.++. |++.+++|...+++ ++... +..||+|+ ++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~--mL~~A~~k~~~~~i--~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH--QLAKAKQKEPLKEC--KIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHhhhccCC--eEEeccHHhCCCCCCceeEEEEcChh
Confidence 4679999999999999877764 359999999965 99999988764433 33322 22799999 8999
Q ss_pred CCCccHHHHHHHHHHHhcCC
Q 031506 139 QDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 139 y~~~~~~~ll~tl~~ll~~~ 158 (158)
++..+.+.+++.+..+|.++
T Consensus 189 ~~~~d~~~~L~e~~rvLkPG 208 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIG 208 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCC
Confidence 88888889999999888753
No 113
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.86 E-value=7.4e-08 Score=73.52 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=61.5
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC---------CCcEEEec
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL---------PPSHICSR 136 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~---------~fD~Ii~d 136 (158)
.++.+|||+|||+|.+++.+++. +.+|+++|.++. +++.+++|++.+++. +.+...|. .+|.|+.+
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~--~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEE--VVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 46779999999999999988764 369999999965 999999999887653 34443321 45766633
Q ss_pred CCCCCccHHHHHHHHHHHhcC
Q 031506 137 VLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 137 ~iy~~~~~~~ll~tl~~ll~~ 157 (158)
. ....+.+++.+..+|.+
T Consensus 117 ~---~~~~~~~l~~~~~~Lkp 134 (196)
T PRK07402 117 G---GRPIKEILQAVWQYLKP 134 (196)
T ss_pred C---CcCHHHHHHHHHHhcCC
Confidence 2 23457788888777654
No 114
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.85 E-value=2.4e-08 Score=77.76 Aligned_cols=102 Identities=15% Similarity=0.054 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH-------------cCCc
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-------------NKLN 120 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~-------------n~~~ 120 (158)
....|.+|+..... .++.+||++|||.|.-++.+|.+|.+|+++|+++. +++.+...... .+.+
T Consensus 19 p~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~--Ai~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (213)
T TIGR03840 19 VNPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI--AVEQFFAENGLTPTVTQQGEFTRYRAGN 95 (213)
T ss_pred CCHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH--HHHHHHHHcCCCcceeccccceeeecCc
Confidence 45667777665321 25679999999999999999999999999999975 88864332111 0122
Q ss_pred ceEEEcCC---------CCcEEE-ecCCCC--CccHHHHHHHHHHHhcCC
Q 031506 121 CRLLMTSL---------PPSHIC-SRVLQD--QSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 121 ~~~~~~d~---------~fD~Ii-~d~iy~--~~~~~~ll~tl~~ll~~~ 158 (158)
+++...|. +||.|+ .-++.+ .+..+..++.+..+|.++
T Consensus 96 v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 96 IEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred eEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence 44444332 589999 655433 344566788888888753
No 115
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.85 E-value=3.1e-08 Score=76.27 Aligned_cols=86 Identities=15% Similarity=-0.011 Sum_probs=62.9
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----------CCCcEEE-
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----------LPPSHIC- 134 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----------~~fD~Ii- 134 (158)
.+.+|||+|||+|..+..+++.. .+|+++|+++. +++.+++|++.++.. +.+...| ..||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~--~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEP--GVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechH--HHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 46789999999999999887753 48999999975 999999999887652 3433332 2699999
Q ss_pred ecCC-CCC-c------cHHHHHHHHHHHhcC
Q 031506 135 SRVL-QDQ-S------SLRLIIIEVGIILLS 157 (158)
Q Consensus 135 ~d~i-y~~-~------~~~~ll~tl~~ll~~ 157 (158)
.-+. +.. . ..+.+++.+..+|.+
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp 148 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKP 148 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCC
Confidence 4322 211 1 247788888888765
No 116
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.84 E-value=5.1e-08 Score=82.14 Aligned_cols=87 Identities=24% Similarity=0.107 Sum_probs=68.5
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcc---eEEEcC------------CCCcE
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC---RLLMTS------------LPPSH 132 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~---~~~~~d------------~~fD~ 132 (158)
.+|++||+|-|=||.+|+.+|..|+ +|+.+|++.. +++.+++|.++|++.. +....| .+||+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~--al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKR--ALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHH--HHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 3589999999999999999999999 9999999986 9999999999999853 333332 28999
Q ss_pred EEecCCCCCcc----------HHHHHHHHHHHhcC
Q 031506 133 ICSRVLQDQSS----------LRLIIIEVGIILLS 157 (158)
Q Consensus 133 Ii~d~iy~~~~----------~~~ll~tl~~ll~~ 157 (158)
|+.||+=+..+ +.+|+.....||.+
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p 328 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP 328 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCC
Confidence 99998855433 45555555555543
No 117
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.84 E-value=1.2e-09 Score=85.52 Aligned_cols=86 Identities=21% Similarity=0.210 Sum_probs=66.1
Q ss_pred CCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc----ceEE--EcCCCCcEEE-ecCCCCCcc
Q 031506 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRLL--MTSLPPSHIC-SRVLQDQSS 143 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~----~~~~--~~d~~fD~Ii-~d~iy~~~~ 143 (158)
=+++||||||||+.|..+-.+..+++++|+|+. |++.+.++=--..+- +.+. .-+.+||+|. +|++-|...
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~n--Ml~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~ 203 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISEN--MLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA 203 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHH--HHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc
Confidence 368999999999999999888889999999986 998766532111110 1111 1134999999 999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 031506 144 LRLIIIEVGIILLSS 158 (158)
Q Consensus 144 ~~~ll~tl~~ll~~~ 158 (158)
++.++....-+|.++
T Consensus 204 Le~~~~~aa~~L~~g 218 (287)
T COG4976 204 LEGLFAGAAGLLAPG 218 (287)
T ss_pred hhhHHHHHHHhcCCC
Confidence 999999999888764
No 118
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=6.3e-09 Score=83.52 Aligned_cols=101 Identities=32% Similarity=0.466 Sum_probs=74.3
Q ss_pred CCceEecchHHHHHHHHHhc---ccCCCCCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHH-----HHHHHHHH
Q 031506 46 EYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLK-----NMRRVCEM 116 (158)
Q Consensus 46 ~~g~~vW~~~~~la~~l~~~---~~~~~~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~-----~~~~n~~~ 116 (158)
..|++.|.++..+..++... .-.+.+++|||||||+|+.++.+.+.| ..+.+.|++.. .++ ++..|...
T Consensus 89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~--vl~~~t~pn~~~~~~~ 166 (282)
T KOG2920|consen 89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAE--VLRLVTLPNILVNSHA 166 (282)
T ss_pred ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchh--heeeecccceecchhh
Confidence 58999999999999999865 445689999999999999999998888 59999999974 542 22222211
Q ss_pred c----CC-c-ceEEEc---CC--------CCcEEE-ecCCCCCccHHHHH
Q 031506 117 N----KL-N-CRLLMT---SL--------PPSHIC-SRVLQDQSSLRLII 148 (158)
Q Consensus 117 n----~~-~-~~~~~~---d~--------~fD~Ii-~d~iy~~~~~~~ll 148 (158)
+ .. . ..+... || .||+|+ +..+|.....+.+.
T Consensus 167 ~~~~~e~~~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~ 216 (282)
T KOG2920|consen 167 GVEEKENHKVDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLY 216 (282)
T ss_pred hhhhhhcccceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhH
Confidence 1 10 0 111111 22 799999 99999999988773
No 119
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.81 E-value=8.6e-08 Score=73.45 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=66.1
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecC
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRV 137 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~ 137 (158)
++.+|||+|||+|..+..+++.+. +++++|+++. +++.+++|.. ...++++...| .+||+|+ +..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~--~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE--MLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH--HHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence 678999999999999997777654 8999999965 8898888875 22223333222 2799999 888
Q ss_pred CCCCccHHHHHHHHHHHhcC
Q 031506 138 LQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 138 iy~~~~~~~ll~tl~~ll~~ 157 (158)
+.+......+++.+..+|.+
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~ 135 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKP 135 (223)
T ss_pred eCCcccHHHHHHHHHHHcCC
Confidence 88888889999998888765
No 120
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.79 E-value=1.4e-07 Score=80.68 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=64.8
Q ss_pred eEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEE
Q 031506 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLL 124 (158)
Q Consensus 49 ~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~ 124 (158)
+.+++.+-.++..+.. ..++.+|||+|||+|..++.+++. +.+|+++|.++. +++.+++|++.+++. +.+.
T Consensus 232 ~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~--~l~~~~~~~~~~g~~~v~~~ 306 (445)
T PRK14904 232 VSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQ--KLEKIRSHASALGITIIETI 306 (445)
T ss_pred EEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHH--HHHHHHHHHHHhCCCeEEEE
Confidence 4677655555555543 235789999999999999877653 359999999975 999999999988764 3444
Q ss_pred EcCC-------CCcEEEecCCCC
Q 031506 125 MTSL-------PPSHICSRVLQD 140 (158)
Q Consensus 125 ~~d~-------~fD~Ii~d~iy~ 140 (158)
..|. +||.|+.|+++.
T Consensus 307 ~~Da~~~~~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 307 EGDARSFSPEEQPDAILLDAPCT 329 (445)
T ss_pred eCcccccccCCCCCEEEEcCCCC
Confidence 4332 699999888763
No 121
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.78 E-value=4.8e-08 Score=74.64 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=63.6
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----------CCCcEEE-
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----------LPPSHIC- 134 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----------~~fD~Ii- 134 (158)
...++||+|||+|.+++.+++.. .+|+++|+++. +++.+++|+..+++. +++...| ..+|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~--~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTP--IVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHH--HHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45689999999999999888764 48999999975 999999999887653 4444332 2688888
Q ss_pred e-cCCCCCccH-------HHHHHHHHHHhcCC
Q 031506 135 S-RVLQDQSSL-------RLIIIEVGIILLSS 158 (158)
Q Consensus 135 ~-d~iy~~~~~-------~~ll~tl~~ll~~~ 158 (158)
. ..++....+ +.+++.+..+|.++
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 3 223333222 67889998888753
No 122
>PRK06922 hypothetical protein; Provisional
Probab=98.78 E-value=4.2e-08 Score=86.92 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=64.2
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC----------CCCcEEE-e
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS----------LPPSHIC-S 135 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d----------~~fD~Ii-~ 135 (158)
.++.+|||+|||+|..+..+++. +.+|+++|+++. |++.+++++..++.+..+...| .+||+|+ +
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~--MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISEN--VIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 46789999999999998877764 459999999975 9999999887665544443232 2799999 5
Q ss_pred cCCCC-------------CccHHHHHHHHHHHhcCC
Q 031506 136 RVLQD-------------QSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 136 d~iy~-------------~~~~~~ll~tl~~ll~~~ 158 (158)
.++.+ ......+++.+...|.++
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG 530 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG 530 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence 44332 235677888888777653
No 123
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.77 E-value=4.8e-08 Score=83.83 Aligned_cols=86 Identities=21% Similarity=0.150 Sum_probs=62.3
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc----------CCCCcEEE-ecC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT----------SLPPSHIC-SRV 137 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~----------d~~fD~Ii-~d~ 137 (158)
.++.+|||+|||+|..+..+++.+.+|+++|+++. |++.+++.... ..++.+... +.+||+|+ ..+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~--~l~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIES--VIKKNESINGH-YKNVKFMCADVTSPDLNISDGSVDLIFSNWL 112 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHH--HHHHHHHHhcc-CCceEEEEecccccccCCCCCCEEEEehhhh
Confidence 35679999999999999999998889999999965 88765432111 112233222 12799999 778
Q ss_pred CCCCcc--HHHHHHHHHHHhcC
Q 031506 138 LQDQSS--LRLIIIEVGIILLS 157 (158)
Q Consensus 138 iy~~~~--~~~ll~tl~~ll~~ 157 (158)
+++... ...+++.+..+|.+
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk~ 134 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLKV 134 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC
Confidence 887655 57888888887765
No 124
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.77 E-value=8.3e-08 Score=75.64 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=61.0
Q ss_pred CCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEc--------------CC
Q 031506 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMT--------------SL 128 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~--------------d~ 128 (158)
..+.++|||+|||+|..++.+++. +.+|+++|.++. +++.+++|++.+++.. ++... +.
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~--~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKE--AYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 346789999999999988866543 349999999965 9999999999998753 33322 13
Q ss_pred CCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506 129 PPSHICSRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 129 ~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
+||+|+.|.- .+.+..++..+..++.+
T Consensus 144 ~fD~VfiDa~--k~~y~~~~~~~~~ll~~ 170 (234)
T PLN02781 144 EFDFAFVDAD--KPNYVHFHEQLLKLVKV 170 (234)
T ss_pred CCCEEEECCC--HHHHHHHHHHHHHhcCC
Confidence 7999996643 23444555555555543
No 125
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.75 E-value=4.4e-08 Score=77.81 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=60.0
Q ss_pred HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------CCc
Q 031506 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------PPS 131 (158)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------~fD 131 (158)
+++.+.+.....++.+|||+|||+|.++..+++++..|+++|.++. +++.++.+.... .++.+...|. .||
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~--~~~~l~~~~~~~-~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPR--LAEILRKLLSLY-ERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHH--HHHHHHHHhCcC-CcEEEEECchhcCChhHcC
Confidence 3444554444456789999999999999999999899999999975 999988877532 2344444433 356
Q ss_pred ---EEEecCCCCCc
Q 031506 132 ---HICSRVLQDQS 142 (158)
Q Consensus 132 ---~Ii~d~iy~~~ 142 (158)
+|+++++|+..
T Consensus 94 ~~~~vvsNlPy~i~ 107 (253)
T TIGR00755 94 KQLKVVSNLPYNIS 107 (253)
T ss_pred CcceEEEcCChhhH
Confidence 66699998864
No 126
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.75 E-value=6.7e-08 Score=75.48 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc-------------CCc
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-------------KLN 120 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n-------------~~~ 120 (158)
....|.+|+.... ..++.+||++|||.|.-++.+|.+|.+|+++|+++. +++.+....... ..+
T Consensus 22 p~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~--Ai~~~~~~~~l~~~~~~~~~~~~~~~~~ 98 (218)
T PRK13255 22 VNPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSEL--AVEQFFAENGLTPQTRQSGEFEHYQAGE 98 (218)
T ss_pred CCHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHH--HHHHHHHHcCCCccccccccccccccCc
Confidence 3445666665321 124679999999999999999999999999999975 888653211100 112
Q ss_pred ceEEEcCC---------CCcEEE-ecCCCC--CccHHHHHHHHHHHhcCC
Q 031506 121 CRLLMTSL---------PPSHIC-SRVLQD--QSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 121 ~~~~~~d~---------~fD~Ii-~d~iy~--~~~~~~ll~tl~~ll~~~ 158 (158)
++++..|. .||+|+ .-++.+ .+..+..++.+..+|.++
T Consensus 99 v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 99 ITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred eEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 33333322 688998 554433 445678888888888753
No 127
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.73 E-value=1.2e-07 Score=75.93 Aligned_cols=85 Identities=8% Similarity=-0.081 Sum_probs=61.7
Q ss_pred ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc
Q 031506 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT 126 (158)
Q Consensus 51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~ 126 (158)
...++...+ +++. ..++.+|||+|||+|..++.++++ ...|+++|.++. +++.+++|++.+++. +.+...
T Consensus 56 qd~~s~~~~-~~l~---~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~--~l~~~~~n~~~~g~~~v~~~~~ 129 (264)
T TIGR00446 56 QEASSMIPP-LALE---PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKS--RTKVLIANINRCGVLNVAVTNF 129 (264)
T ss_pred ECHHHHHHH-HHhC---CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHH--HHHHHHHHHHHcCCCcEEEecC
Confidence 344554444 4432 235789999999999999977664 248999999975 999999999998864 344433
Q ss_pred C--------CCCcEEEecCCCCC
Q 031506 127 S--------LPPSHICSRVLQDQ 141 (158)
Q Consensus 127 d--------~~fD~Ii~d~iy~~ 141 (158)
| ..||.|+.|+++..
T Consensus 130 D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 130 DGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred CHHHhhhhccCCCEEEEcCCCCC
Confidence 3 26999998887653
No 128
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.73 E-value=3.3e-08 Score=77.81 Aligned_cols=63 Identities=21% Similarity=0.109 Sum_probs=53.2
Q ss_pred EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHH-HHHHHH
Q 031506 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-NMRRVC 114 (158)
Q Consensus 50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~-~~~~n~ 114 (158)
.++.++..|...+......+++++|||+|||||.++..+++.|+ +|+++|.++. |+. .+++|.
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~--~l~~~l~~~~ 119 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYN--QLAEKLRQDE 119 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHH--HHHHHHhcCC
Confidence 66889999999998877677899999999999999999999987 8999999974 555 455543
No 129
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.73 E-value=2.1e-07 Score=75.66 Aligned_cols=86 Identities=9% Similarity=0.050 Sum_probs=66.1
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC------CCcEEE-ecC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL------PPSHIC-SRV 137 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~------~fD~Ii-~d~ 137 (158)
.++.+|||+|||+|..++.+++.. .+++++|+ +++++.+++|+...++. +.+...|. .+|+|+ +.+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~---~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL---PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec---HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhh
Confidence 355799999999999999888875 48999998 35899999999988765 33444432 579999 998
Q ss_pred CCCCcc--HHHHHHHHHHHhcC
Q 031506 138 LQDQSS--LRLIIIEVGIILLS 157 (158)
Q Consensus 138 iy~~~~--~~~ll~tl~~ll~~ 157 (158)
+++... ...+++.+...|.+
T Consensus 225 lh~~~~~~~~~il~~~~~~L~p 246 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRS 246 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCC
Confidence 876533 45788888877765
No 130
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.72 E-value=1.7e-07 Score=80.12 Aligned_cols=82 Identities=15% Similarity=0.016 Sum_probs=60.6
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS- 127 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d- 127 (158)
.++..++.++. ..++.+|||+|||+|..++.++++ ..+|+++|+++. +++.+++|++.+++. +.+...|
T Consensus 237 ~~s~lv~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~--~l~~~~~n~~~~g~~~v~~~~~D~ 310 (444)
T PRK14902 237 ESSMLVAPALD----PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEH--KLKLIEENAKRLGLTNIETKALDA 310 (444)
T ss_pred hHHHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCeEEEEeCCc
Confidence 34445554442 235679999999999999987764 359999999965 999999999988764 3443332
Q ss_pred --------CCCcEEEecCCCC
Q 031506 128 --------LPPSHICSRVLQD 140 (158)
Q Consensus 128 --------~~fD~Ii~d~iy~ 140 (158)
..||+|++|+++.
T Consensus 311 ~~~~~~~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 311 RKVHEKFAEKFDKILVDAPCS 331 (444)
T ss_pred ccccchhcccCCEEEEcCCCC
Confidence 2699999888754
No 131
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.70 E-value=5.6e-08 Score=73.90 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=64.2
Q ss_pred Eec---chHHHHHHHHHhccc----CCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506 50 FVW---PCSVILAEYVWQQRY----RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (158)
Q Consensus 50 ~vW---~~~~~la~~l~~~~~----~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (158)
-+| ++...+.+|+..+.. .....+|||||||.|.+-.-+++.|. ..+++|+++. +++.++.-++.++..
T Consensus 40 EvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~--AV~LA~niAe~~~~~ 117 (227)
T KOG1271|consen 40 EVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEK--AVELAQNIAERDGFS 117 (227)
T ss_pred ceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHH--HHHHHHHHHHhcCCC
Confidence 456 677888999887543 22233999999999999998999886 5999999976 888877777777776
Q ss_pred --ceEEEcCC--------CCcEEE
Q 031506 121 --CRLLMTSL--------PPSHIC 134 (158)
Q Consensus 121 --~~~~~~d~--------~fD~Ii 134 (158)
+++.+.|. +||+|+
T Consensus 118 n~I~f~q~DI~~~~~~~~qfdlvl 141 (227)
T KOG1271|consen 118 NEIRFQQLDITDPDFLSGQFDLVL 141 (227)
T ss_pred cceeEEEeeccCCcccccceeEEe
Confidence 56666654 688887
No 132
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=2.5e-07 Score=78.97 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=56.1
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------CCCcEEEe
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------LPPSHICS 135 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~~fD~Ii~ 135 (158)
.++.+|||+|||+|..++.++.. +.+|+++|+++. +++.+++|++..++. +.+...| .+||.|+.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~--rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISRE--KIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 35779999999999999877764 459999999975 999999999988764 3444333 26999998
Q ss_pred cCCCC
Q 031506 136 RVLQD 140 (158)
Q Consensus 136 d~iy~ 140 (158)
|++|.
T Consensus 314 DaPCs 318 (431)
T PRK14903 314 DAPCT 318 (431)
T ss_pred CCCCC
Confidence 88874
No 133
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.8e-07 Score=79.83 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------ 127 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------ 127 (158)
+..|.++........++.++|||=||.|.+|+.+|+...+|+++++++. +++.+++|++.|++. +.+...+
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~--aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPE--AVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHH--HHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 5566666666555556789999999999999999999999999999964 999999999999986 4444331
Q ss_pred -----CCCcEEEecCCCCCccHHHHHHHHH
Q 031506 128 -----LPPSHICSRVLQDQSSLRLIIIEVG 152 (158)
Q Consensus 128 -----~~fD~Ii~d~iy~~~~~~~ll~tl~ 152 (158)
..||.|+.||+=---. +++++.+.
T Consensus 356 ~~~~~~~~d~VvvDPPR~G~~-~~~lk~l~ 384 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAGAD-REVLKQLA 384 (432)
T ss_pred hccccCCCCEEEECCCCCCCC-HHHHHHHH
Confidence 2789999999865443 34444443
No 134
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.69 E-value=1.3e-07 Score=79.39 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=55.2
Q ss_pred CCeEEEeccCCCHHHHHHhhc--CC-EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC---------CCCcEEEecC
Q 031506 71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS---------LPPSHICSRV 137 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~--g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d---------~~fD~Ii~d~ 137 (158)
+.+|||+.||+|..|+.+++. |+ +|++.|+++. +++.+++|++.|++. +.+...| .+||+|..||
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~--Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPK--AVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHH--HHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 358999999999999988886 54 8999999965 999999999999875 4444332 2799999999
Q ss_pred CCC
Q 031506 138 LQD 140 (158)
Q Consensus 138 iy~ 140 (158)
|.
T Consensus 123 -fG 124 (374)
T TIGR00308 123 -FG 124 (374)
T ss_pred -CC
Confidence 54
No 135
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.67 E-value=3e-07 Score=74.58 Aligned_cols=98 Identities=20% Similarity=0.133 Sum_probs=63.8
Q ss_pred EEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHH
Q 031506 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 37 ~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
..+.-..+..+|+.. .-...=.|+.+. .++++||++-|=||.+|+.+++.|+ +|+.+|.+.. +++.+++|+.
T Consensus 95 f~v~l~~gqktGlFl--DqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~--al~~a~~N~~ 167 (286)
T PF10672_consen 95 FRVDLTDGQKTGLFL--DQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKR--ALEWAKENAA 167 (286)
T ss_dssp EEEESSSSSSTSS-G--GGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HH--HHHHHHHHHH
T ss_pred EEEEcCCCCcceEcH--HHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHH
Confidence 333333345677652 222222333332 3688999999999999999999998 8999999976 9999999999
Q ss_pred HcCCc---ceEEEcC-----------CCCcEEEecCCCCC
Q 031506 116 MNKLN---CRLLMTS-----------LPPSHICSRVLQDQ 141 (158)
Q Consensus 116 ~n~~~---~~~~~~d-----------~~fD~Ii~d~iy~~ 141 (158)
+|++. .++...| .+||+||.||+=+.
T Consensus 168 lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~ 207 (286)
T PF10672_consen 168 LNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA 207 (286)
T ss_dssp HTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEE
T ss_pred HcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 99975 3344443 28999998887443
No 136
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.65 E-value=4.3e-07 Score=77.33 Aligned_cols=83 Identities=10% Similarity=-0.033 Sum_probs=62.1
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHHcCCcceE--EEcC-
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMTS- 127 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~d- 127 (158)
.++..++.++. ..++.+|||+|||+|..++.+++. + .+|+++|.++. +++.+++|++.+++.+.+ ...|
T Consensus 225 ~~s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~--~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 225 ASAQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEH--RLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred HHHHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHH--HHHHHHHHHHHcCCCeEEEEecccc
Confidence 45666666553 235679999999999999987764 3 59999999975 999999999998876443 2221
Q ss_pred ---------CCCcEEEecCCCCC
Q 031506 128 ---------LPPSHICSRVLQDQ 141 (158)
Q Consensus 128 ---------~~fD~Ii~d~iy~~ 141 (158)
.+||.|+.|+++..
T Consensus 299 ~~~~~~~~~~~fD~VllDaPcSg 321 (426)
T TIGR00563 299 RGPSQWAENEQFDRILLDAPCSA 321 (426)
T ss_pred ccccccccccccCEEEEcCCCCC
Confidence 25999998876553
No 137
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.63 E-value=1.3e-07 Score=78.75 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=60.1
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc-----
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT----- 126 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~----- 126 (158)
.....|.+++.+.....++ ++|||-||+|.+|+.+|+.+.+|+++|.++. +++.+++|++.|++. +.+...
T Consensus 180 ~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~--av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEE--AVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HH--HHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHH--HHHHHHHHHHHcCCCcceEEEeeccch
Confidence 4556666666654433334 7999999999999999999999999999965 999999999999975 333321
Q ss_pred -------------------CCCCcEEEecCCCCCcc
Q 031506 127 -------------------SLPPSHICSRVLQDQSS 143 (158)
Q Consensus 127 -------------------d~~fD~Ii~d~iy~~~~ 143 (158)
+..+|+|+.||+=..-.
T Consensus 257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp CCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 01579999999865544
No 138
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.63 E-value=2.1e-07 Score=74.65 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=60.3
Q ss_pred CCCeEEEeccCCCH----HHHHHhhc-------CCEEEEEecCChHHHHHHHHHHHH----HcCC---------------
Q 031506 70 SGANVVELGAGTSL----PGLVAAKV-------GSNVTLTDDSNRIEVLKNMRRVCE----MNKL--------------- 119 (158)
Q Consensus 70 ~~~~vLELG~GtGl----~~i~~a~~-------g~~v~~tD~~~~~~~l~~~~~n~~----~n~~--------------- 119 (158)
++.+|+|+|||||- +++.+++. +.+|++||+++. |++.+++++- ..++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~--~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK--ALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH--HHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 45699999999995 56655543 348999999975 9999888641 1111
Q ss_pred ---------cceEEEcC--------CCCcEEE-ecCCCCCc--cHHHHHHHHHHHhcCC
Q 031506 120 ---------NCRLLMTS--------LPPSHIC-SRVLQDQS--SLRLIIIEVGIILLSS 158 (158)
Q Consensus 120 ---------~~~~~~~d--------~~fD~Ii-~d~iy~~~--~~~~ll~tl~~ll~~~ 158 (158)
.+.+...| .+||+|+ .+++.|.+ ....+++.+...|.++
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 12233322 2799999 78886653 5567999998888753
No 139
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.62 E-value=8.5e-08 Score=74.66 Aligned_cols=83 Identities=18% Similarity=0.157 Sum_probs=65.5
Q ss_pred CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-------CCCcEEE-ecCCC
Q 031506 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-------LPPSHIC-SRVLQ 139 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-------~~fD~Ii-~d~iy 139 (158)
...+|.|||||+|..+.+++++ ++.|+++|-|+. |++.++..+- ++++...| .++|+|+ +-++.
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~--Mla~Aa~rlp----~~~f~~aDl~~w~p~~~~dllfaNAvlq 103 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPA--MLAKAAQRLP----DATFEEADLRTWKPEQPTDLLFANAVLQ 103 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHH--HHHHHHHhCC----CCceecccHhhcCCCCccchhhhhhhhh
Confidence 5568999999999999999987 469999999964 9988755332 34443333 3899999 88889
Q ss_pred CCccHHHHHHHHHHHhcCC
Q 031506 140 DQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 140 ~~~~~~~ll~tl~~ll~~~ 158 (158)
+.+++.+|+..+-..|.++
T Consensus 104 WlpdH~~ll~rL~~~L~Pg 122 (257)
T COG4106 104 WLPDHPELLPRLVSQLAPG 122 (257)
T ss_pred hccccHHHHHHHHHhhCCC
Confidence 9999999999988877653
No 140
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.61 E-value=1.7e-07 Score=71.43 Aligned_cols=80 Identities=15% Similarity=0.012 Sum_probs=57.9
Q ss_pred CCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHcCCcc---eEEE----c-CCCCcEEE-ecCCC
Q 031506 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC---RLLM----T-SLPPSHIC-SRVLQ 139 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~---~~~~----~-d~~fD~Ii-~d~iy 139 (158)
++.+|||+|||+|.++..+++. +..++++|+++. +++.++++ ++.. .+.. . +.+||+|+ +.+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~--~i~~a~~~----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQD--GVLACVAR----GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHH--HHHHHHHc----CCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 4568999999999999877654 558899999964 88776542 2221 1111 1 23799999 99999
Q ss_pred CCccHHHHHHHHHHHh
Q 031506 140 DQSSLRLIIIEVGIIL 155 (158)
Q Consensus 140 ~~~~~~~ll~tl~~ll 155 (158)
+..+...+++.+...+
T Consensus 87 ~~~d~~~~l~e~~r~~ 102 (194)
T TIGR02081 87 ATRNPEEILDEMLRVG 102 (194)
T ss_pred cCcCHHHHHHHHHHhC
Confidence 9988888888776543
No 141
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.8e-07 Score=70.98 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=70.6
Q ss_pred chHHHHHHHHHhcccCC---CCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 53 PCSVILAEYVWQQRYRF---SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~---~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
+.+..|.+-+++..... ..+.++|+|||+|.++-.+++. + +...+||+++. +++...+.+..|+....+...
T Consensus 23 EDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~--A~~~Tl~TA~~n~~~~~~V~t 100 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPE--ALEATLETARCNRVHIDVVRT 100 (209)
T ss_pred chhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHH--HHHHHHHHHHhcCCccceeeh
Confidence 45666777666543222 3567999999999999987764 3 47899999964 999999999999988776666
Q ss_pred CC-------CCcEEEecCCCCCccHHHH
Q 031506 127 SL-------PPSHICSRVLQDQSSLRLI 147 (158)
Q Consensus 127 d~-------~fD~Ii~d~iy~~~~~~~l 147 (158)
|. +.|+++.+|+|-+...+++
T Consensus 101 dl~~~l~~~~VDvLvfNPPYVpt~~~~i 128 (209)
T KOG3191|consen 101 DLLSGLRNESVDVLVFNPPYVPTSDEEI 128 (209)
T ss_pred hHHhhhccCCccEEEECCCcCcCCcccc
Confidence 54 8999999999887664444
No 142
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.59 E-value=2.9e-07 Score=77.54 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=57.4
Q ss_pred CCeEEEeccCCCHHHHHHhhc-CC-EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC--------CCCcEEEecCCC
Q 031506 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS--------LPPSHICSRVLQ 139 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~-g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d--------~~fD~Ii~d~iy 139 (158)
+.+|||++||+|..|+.+++. ++ +|+++|+++. +++.+++|++.|++. ..+...| .+||+|+.||+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~--Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPD--AVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC-
Confidence 468999999999999988764 43 8999999965 999999999999875 2343333 36999999985
Q ss_pred CCccHHHHHHH
Q 031506 140 DQSSLRLIIIE 150 (158)
Q Consensus 140 ~~~~~~~ll~t 150 (158)
....++++.
T Consensus 135 --Gs~~~~l~~ 143 (382)
T PRK04338 135 --GSPAPFLDS 143 (382)
T ss_pred --CCcHHHHHH
Confidence 333444444
No 143
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.58 E-value=4.3e-07 Score=59.70 Aligned_cols=83 Identities=25% Similarity=0.223 Sum_probs=59.1
Q ss_pred eEEEeccCCCHHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEc---------CCCCcEEE-ecCCCC
Q 031506 73 NVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMT---------SLPPSHIC-SRVLQD 140 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~---------d~~fD~Ii-~d~iy~ 140 (158)
+++|+|||+|..+..+++ .+.+++++|.++. +++.++++...+.. ..++... ..+||+|+ ..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPV--ALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 489999999999998877 4569999999975 77777754333321 2333322 22799999 677676
Q ss_pred -CccHHHHHHHHHHHhcC
Q 031506 141 -QSSLRLIIIEVGIILLS 157 (158)
Q Consensus 141 -~~~~~~ll~tl~~ll~~ 157 (158)
......+++.+...+.+
T Consensus 79 ~~~~~~~~l~~~~~~l~~ 96 (107)
T cd02440 79 LVEDLARFLEEARRLLKP 96 (107)
T ss_pred hhhHHHHHHHHHHHHcCC
Confidence 77888888888776643
No 144
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.58 E-value=4.3e-07 Score=73.98 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=59.7
Q ss_pred CCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcC--CcceEEEcCC--------CC----cE
Q 031506 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRLLMTSL--------PP----SH 132 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~~d~--------~f----D~ 132 (158)
++.+|||||||||..+..+++. +.+++++|+|+. |++.+++++.... +++.....|. .+ .+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~--mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISAD--ALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHH--HHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 4578999999999999977766 579999999975 9999999887643 3343333332 23 33
Q ss_pred EE-e-cCCCCCc--cHHHHHHHHHHHhcC
Q 031506 133 IC-S-RVLQDQS--SLRLIIIEVGIILLS 157 (158)
Q Consensus 133 Ii-~-d~iy~~~--~~~~ll~tl~~ll~~ 157 (158)
++ . .++++.+ ....+++.++..|.+
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~p 169 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGP 169 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCC
Confidence 44 4 4565543 456678888777654
No 145
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.58 E-value=9.1e-07 Score=67.38 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=61.2
Q ss_pred CCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc-------CC-CCcEEE-e
Q 031506 68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT-------SL-PPSHIC-S 135 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~-------d~-~fD~Ii-~ 135 (158)
..++.+++|+|||||.+++.++..+. +|+++|.++. +++.+++|++..+.+ +.+... +. .||.|+ -
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~--a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIG 109 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEE--ALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIG 109 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHH--HHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEEC
Confidence 34678999999999999998886554 9999999965 999999999998854 333322 22 599998 4
Q ss_pred cCCCCCccHHHHHHHHHHHhcC
Q 031506 136 RVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 136 d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
-- ..++.++++....|++
T Consensus 110 Gg----~~i~~ile~~~~~l~~ 127 (187)
T COG2242 110 GG----GNIEEILEAAWERLKP 127 (187)
T ss_pred CC----CCHHHHHHHHHHHcCc
Confidence 33 4455666665554443
No 146
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.58 E-value=2.5e-07 Score=71.89 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-CC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC-
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL- 128 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~- 128 (158)
++..+...+.+.....++.+|||+|||||..+-++++. |. .|+.+|..+. +.+.+++|++..+.. +.+...|.
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~--l~~~A~~~l~~~~~~nv~~~~gdg~ 133 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPE--LAERARRNLARLGIDNVEVVVGDGS 133 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHH--HHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHH--HHHHHHHHHHHhccCceeEEEcchh
Confidence 44444445555555568899999999999999988876 43 6999999964 899999999988764 55554442
Q ss_pred -------CCcEEE
Q 031506 129 -------PPSHIC 134 (158)
Q Consensus 129 -------~fD~Ii 134 (158)
+||.|+
T Consensus 134 ~g~~~~apfD~I~ 146 (209)
T PF01135_consen 134 EGWPEEAPFDRII 146 (209)
T ss_dssp GTTGGG-SEEEEE
T ss_pred hccccCCCcCEEE
Confidence 899999
No 147
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.57 E-value=4e-07 Score=75.09 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=55.8
Q ss_pred HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----
Q 031506 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS----- 127 (158)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d----- 127 (158)
.+..++.+.....++.+|||+|||+|..++.+++... .|+++|.++. +++.+++|++.++.. +.+...|
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~--~l~~Ar~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK--ICEIAKRNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHH--HHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence 3333444433334678999999999999998887542 6999999965 999999999988764 3333333
Q ss_pred ---CCCcEEEe
Q 031506 128 ---LPPSHICS 135 (158)
Q Consensus 128 ---~~fD~Ii~ 135 (158)
.+||+|+.
T Consensus 145 ~~~~~fD~Ii~ 155 (322)
T PRK13943 145 PEFAPYDVIFV 155 (322)
T ss_pred cccCCccEEEE
Confidence 27999994
No 148
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.54 E-value=8.2e-07 Score=74.79 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=64.2
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC----------CCCcEEE-e
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS----------LPPSHIC-S 135 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d----------~~fD~Ii-~ 135 (158)
.+..+||+|||+|...+.+|+.. ..++++|+++. ++..+.+++..+++. +++...| ..+|.|+ .
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~--~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTP--SIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHH--HHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 45689999999999999888874 58999999965 999999999888763 4444333 3789998 3
Q ss_pred c-CCCCCccH-----HHHHHHHHHHhcCC
Q 031506 136 R-VLQDQSSL-----RLIIIEVGIILLSS 158 (158)
Q Consensus 136 d-~iy~~~~~-----~~ll~tl~~ll~~~ 158 (158)
= .++....+ +.+++.+..+|.++
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 2 23333322 67888888887653
No 149
>PRK04457 spermidine synthase; Provisional
Probab=98.54 E-value=6e-07 Score=71.93 Aligned_cols=86 Identities=10% Similarity=0.083 Sum_probs=62.2
Q ss_pred CCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcC--CcceEEEcCC---------CCcEEEec
Q 031506 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRLLMTSL---------PPSHICSR 136 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~~d~---------~fD~Ii~d 136 (158)
++++|||||||+|.++..+++. +.+|+++|+++. +++.++++...++ -++++...|. +||+|+.|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~--vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQ--VIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHH--HHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4578999999999999977665 358999999965 9999999987553 2345554442 79999976
Q ss_pred CCCCCc-----cHHHHHHHHHHHhcC
Q 031506 137 VLQDQS-----SLRLIIIEVGIILLS 157 (158)
Q Consensus 137 ~iy~~~-----~~~~ll~tl~~ll~~ 157 (158)
...... ...++++.+...|.+
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~p 169 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSS 169 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCC
Confidence 432111 236778888777654
No 150
>PTZ00146 fibrillarin; Provisional
Probab=98.53 E-value=2.1e-06 Score=69.86 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=66.3
Q ss_pred CCceEecch-HHHHHHHHHhc---ccCCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHH-Hc
Q 031506 46 EYGLFVWPC-SVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCE-MN 117 (158)
Q Consensus 46 ~~g~~vW~~-~~~la~~l~~~---~~~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~-~n 117 (158)
...+++|.. -=.||.-|+.. ....++.+|||||||+|..+..++..- ..|+++|+++. |++.+...++ ..
T Consensus 104 ~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r--~~~dLl~~ak~r~ 181 (293)
T PTZ00146 104 KIEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHR--SGRDLTNMAKKRP 181 (293)
T ss_pred cceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHH--HHHHHHHHhhhcC
Confidence 345899954 33455445442 223467899999999999999888763 38999999963 5543333222 12
Q ss_pred CCcceEEEc-----------CCCCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506 118 KLNCRLLMT-----------SLPPSHICSRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 118 ~~~~~~~~~-----------d~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
++ ..... ...||+|++|.. .+.....++..+..+|++
T Consensus 182 NI--~~I~~Da~~p~~y~~~~~~vDvV~~Dva-~pdq~~il~~na~r~LKp 229 (293)
T PTZ00146 182 NI--VPIIEDARYPQKYRMLVPMVDVIFADVA-QPDQARIVALNAQYFLKN 229 (293)
T ss_pred CC--EEEECCccChhhhhcccCCCCEEEEeCC-CcchHHHHHHHHHHhccC
Confidence 22 11111 126899998774 455555666677766654
No 151
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=1.3e-06 Score=74.61 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=54.4
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC------------CCCcE
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS------------LPPSH 132 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d------------~~fD~ 132 (158)
.++.+|||+|||+|..++.+++. + .+|+++|.++. +++.+++|++.+++. +.+...| ..||.
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~--rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSAS--RLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHH--HHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 35789999999999999987765 2 48999999975 999999999998864 3443322 26999
Q ss_pred EEecCCC
Q 031506 133 ICSRVLQ 139 (158)
Q Consensus 133 Ii~d~iy 139 (158)
|+.|+++
T Consensus 329 Vl~DaPC 335 (434)
T PRK14901 329 ILLDAPC 335 (434)
T ss_pred EEEeCCC
Confidence 9977764
No 152
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.51 E-value=9.3e-07 Score=68.54 Aligned_cols=98 Identities=13% Similarity=0.022 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC--
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-- 127 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-- 127 (158)
+..-..++.......+.++|||+|+++|..++.+|+. +.+|+.+|.++ +..+.+++|++..++. +++...|
T Consensus 30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~--~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP--ERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH--HHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcH--HHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 3344444433223446789999999999999988864 56999999996 4899999999998875 3444332
Q ss_pred ------------CCCcEEEecCCCCCccHHHHHHHHHHHhc
Q 031506 128 ------------LPPSHICSRVLQDQSSLRLIIIEVGIILL 156 (158)
Q Consensus 128 ------------~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~ 156 (158)
.+||+|+-|. ....+...+..+..+|.
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa--~K~~y~~y~~~~~~ll~ 146 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDA--DKRNYLEYFEKALPLLR 146 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEES--TGGGHHHHHHHHHHHEE
T ss_pred hhHHHHHhccCCCceeEEEEcc--cccchhhHHHHHhhhcc
Confidence 2699999333 23444444444444443
No 153
>PLN03075 nicotianamine synthase; Provisional
Probab=98.49 E-value=1.5e-06 Score=70.73 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=62.8
Q ss_pred CCCeEEEeccC-CCHHHHHHh-hc--CCEEEEEecCChHHHHHHHHHHHHH-cCCc--ceEEEcC--------CCCcEEE
Q 031506 70 SGANVVELGAG-TSLPGLVAA-KV--GSNVTLTDDSNRIEVLKNMRRVCEM-NKLN--CRLLMTS--------LPPSHIC 134 (158)
Q Consensus 70 ~~~~vLELG~G-tGl~~i~~a-~~--g~~v~~tD~~~~~~~l~~~~~n~~~-n~~~--~~~~~~d--------~~fD~Ii 134 (158)
.+++|+|+||| .|+.++.++ +. +.+++++|.++. +++.+++++.. .++. +++...| .+||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~--ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPS--ANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 67899999999 556666555 33 347999999965 99999999964 4443 3333322 3899999
Q ss_pred ecCC-CC-CccHHHHHHHHHHHhcCC
Q 031506 135 SRVL-QD-QSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 135 ~d~i-y~-~~~~~~ll~tl~~ll~~~ 158 (158)
++++ |. .+....+++.+...|.++
T Consensus 201 ~~ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 201 LAALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred EecccccccccHHHHHHHHHHhcCCC
Confidence 4465 44 378899999998887653
No 154
>PRK00811 spermidine synthase; Provisional
Probab=98.49 E-value=1.3e-06 Score=70.73 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=58.9
Q ss_pred CCCeEEEeccCCCHHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHHc------CCcceEEEcC---------CCCcE
Q 031506 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMN------KLNCRLLMTS---------LPPSH 132 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~-g-~~v~~tD~~~~~~~l~~~~~n~~~n------~~~~~~~~~d---------~~fD~ 132 (158)
++++||++|||+|.++..+.+. + .+|+++|+++. +++.+++++... .-++++...| .+||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~--vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER--VVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH--HHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 4679999999999999977776 4 38999999975 999999987632 2234444333 37999
Q ss_pred EEecC--CCCCc---cHHHHHHHHHHHhcC
Q 031506 133 ICSRV--LQDQS---SLRLIIIEVGIILLS 157 (158)
Q Consensus 133 Ii~d~--iy~~~---~~~~ll~tl~~ll~~ 157 (158)
|++|. .+... ...++++.++..|..
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~ 183 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKE 183 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCC
Confidence 99553 22221 125566666666543
No 155
>PLN02476 O-methyltransferase
Probab=98.47 E-value=2e-06 Score=69.55 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=62.1
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc--------------CCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT--------------SLP 129 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~--------------d~~ 129 (158)
.+.++|||+|+|+|..++.+++. +.+|+.+|.++. .++.+++|++.+++. +++... +.+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e--~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSN--SLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 36789999999999999988763 347999999964 899999999999875 333322 137
Q ss_pred CcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506 130 PSHICSRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 130 fD~Ii~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
||+|+.|.- ...+...+..+..+|.+
T Consensus 195 FD~VFIDa~--K~~Y~~y~e~~l~lL~~ 220 (278)
T PLN02476 195 YDFAFVDAD--KRMYQDYFELLLQLVRV 220 (278)
T ss_pred CCEEEECCC--HHHHHHHHHHHHHhcCC
Confidence 999995543 34555556555555543
No 156
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.43 E-value=8.8e-07 Score=68.45 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=53.0
Q ss_pred CCCCeEEEeccCCCHHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHcCCcceE--EEcC-------CCCcEEEecC
Q 031506 69 FSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMTS-------LPPSHICSRV 137 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~d-------~~fD~Ii~d~ 137 (158)
.++..|+|+.||.|.+++.+|+ .++.|++.|+++. +++.+++|+++|++...+ ...| ..||-|+++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~--a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD--AVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH--HHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHH--HHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence 3678999999999999999998 6679999999964 999999999999987544 3333 3789999544
Q ss_pred C-CCCccHHHH
Q 031506 138 L-QDQSSLRLI 147 (158)
Q Consensus 138 i-y~~~~~~~l 147 (158)
+ .-.+-++..
T Consensus 178 p~~~~~fl~~~ 188 (200)
T PF02475_consen 178 PESSLEFLDAA 188 (200)
T ss_dssp TSSGGGGHHHH
T ss_pred hHHHHHHHHHH
Confidence 4 434444443
No 157
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.40 E-value=2.5e-07 Score=72.90 Aligned_cols=82 Identities=17% Similarity=0.056 Sum_probs=62.5
Q ss_pred eEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC--Cc--------ceEEEcCCCCcEEE-ecCCCCC
Q 031506 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK--LN--------CRLLMTSLPPSHIC-SRVLQDQ 141 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~--~~--------~~~~~~d~~fD~Ii-~d~iy~~ 141 (158)
.++|+|||+|..++.++....+|++||.++. ||+.+++.-...- .. +...+.+.+.|+|+ +-|+++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~--mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEA--MLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHH--HHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 7999999999999999999889999999975 9997776332211 11 12233355899999 9999887
Q ss_pred ccHHHHHHHHHHHhcC
Q 031506 142 SSLRLIIIEVGIILLS 157 (158)
Q Consensus 142 ~~~~~ll~tl~~ll~~ 157 (158)
.. +.+.+.++.+|.+
T Consensus 114 dl-e~fy~~~~rvLRk 128 (261)
T KOG3010|consen 114 DL-ERFYKEAYRVLRK 128 (261)
T ss_pred ch-HHHHHHHHHHcCC
Confidence 65 7788888888764
No 158
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.40 E-value=1.3e-06 Score=65.46 Aligned_cols=67 Identities=10% Similarity=0.002 Sum_probs=48.1
Q ss_pred eEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcce--EEEcCC-------C----CcEEEecCCC
Q 031506 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--LLMTSL-------P----PSHICSRVLQ 139 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~~d~-------~----fD~Ii~d~iy 139 (158)
.|+|+.||.|.-++.+|+.+.+|+++|+++. .++.+++|++..++..+ +...|+ + ||+|+.+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~--~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPE--RLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HH--HHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 6999999999999999999999999999964 89999999999987544 444443 3 8999966654
Q ss_pred CC
Q 031506 140 DQ 141 (158)
Q Consensus 140 ~~ 141 (158)
--
T Consensus 80 GG 81 (163)
T PF09445_consen 80 GG 81 (163)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 159
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.39 E-value=3.2e-06 Score=66.46 Aligned_cols=109 Identities=7% Similarity=-0.074 Sum_probs=72.5
Q ss_pred CCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH----------
Q 031506 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE---------- 115 (158)
Q Consensus 46 ~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~---------- 115 (158)
.+|++.=.....|.+|+..... -++.+||..|||.|.-.+.+|.+|.+|+++|+++. +++.+.+...
T Consensus 20 ~~~f~~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~--Ai~~~~~e~~~~~~~~~~~~ 96 (226)
T PRK13256 20 DVGFCQESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEK--AVLSFFSQNTINYEVIHGND 96 (226)
T ss_pred CCCCccCCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHH--HHHHHHHHcCCCcceecccc
Confidence 3444333445666676655332 25679999999999999999999999999999975 7876544211
Q ss_pred ---HcCCcceEEEcCC-----------CCcEEE-ecC--CCCCccHHHHHHHHHHHhcC
Q 031506 116 ---MNKLNCRLLMTSL-----------PPSHIC-SRV--LQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 116 ---~n~~~~~~~~~d~-----------~fD~Ii-~d~--iy~~~~~~~ll~tl~~ll~~ 157 (158)
..+..++++..|. +||+|+ .-+ -..++....-++.+..+|.+
T Consensus 97 ~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p 155 (226)
T PRK13256 97 YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN 155 (226)
T ss_pred cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC
Confidence 0122344443322 589988 433 34566677788888887765
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.38 E-value=2.4e-06 Score=66.80 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=63.6
Q ss_pred CCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCcceE--EE-cC----------CCCcEE
Q 031506 70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LM-TS----------LPPSHI 133 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~-~d----------~~fD~I 133 (158)
..++|||+|.+.|..++.+|.. . .+++.+|.++. +.+.+++|++..++..++ .. .| .+||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e--~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEE--RAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHH--HHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 6789999999999999976653 2 38999999964 999999999999886542 23 22 389999
Q ss_pred E--ecCCCCCccHHHHHHHH
Q 031506 134 C--SRVLQDQSSLRLIIIEV 151 (158)
Q Consensus 134 i--~d~iy~~~~~~~ll~tl 151 (158)
+ +|--.|+..++..++.+
T Consensus 137 FIDadK~~yp~~le~~~~lL 156 (219)
T COG4122 137 FIDADKADYPEYLERALPLL 156 (219)
T ss_pred EEeCChhhCHHHHHHHHHHh
Confidence 9 88888888777766654
No 161
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.38 E-value=1.1e-06 Score=66.59 Aligned_cols=84 Identities=13% Similarity=0.070 Sum_probs=57.2
Q ss_pred HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC--E---------EEEEecCChHHHHHHHHHHHHHcCCc--ceE
Q 031506 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--N---------VTLTDDSNRIEVLKNMRRVCEMNKLN--CRL 123 (158)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~--~---------v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~ 123 (158)
.+|.-|.......++..+||--||+|.+-+.++..+. . +++.|+++. +++.+++|++..++. +.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~--~v~~a~~N~~~ag~~~~i~~ 92 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPK--AVRGARENLKAAGVEDYIDF 92 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHH--HHHHHHHHHHHTT-CGGEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHH--HHHHHHHHHHhcccCCceEE
Confidence 4555555544444677999999999999998777654 3 779999965 999999999988765 334
Q ss_pred EEcC--------CCCcEEEecCCCCCc
Q 031506 124 LMTS--------LPPSHICSRVLQDQS 142 (158)
Q Consensus 124 ~~~d--------~~fD~Ii~d~iy~~~ 142 (158)
..+| ..+|+|++||+|-..
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNPPYGRR 119 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE--STTS
T ss_pred EecchhhcccccCCCCEEEECcchhhh
Confidence 4433 268999999999863
No 162
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.37 E-value=1.4e-06 Score=66.67 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=55.7
Q ss_pred CCCeEEEeccCCCHHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc----------CCCCcEEE-ecC
Q 031506 70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT----------SLPPSHIC-SRV 137 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~----------d~~fD~Ii-~d~ 137 (158)
++.||||||||.|.+-..+.. ++.+..++|+++. .+..+ -.++++ +.+. |..||+|| +..
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~--~v~~c----v~rGv~--Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPD--NVAAC----VARGVS--VIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHH--HHHHH----HHcCCC--EEECCHHHhHhhCCCCCccEEehHhH
Confidence 467999999999987765554 6779999999964 33322 224443 3333 34899999 999
Q ss_pred CCCCccHHHHHHHHHH
Q 031506 138 LQDQSSLRLIIIEVGI 153 (158)
Q Consensus 138 iy~~~~~~~ll~tl~~ 153 (158)
+......+.+++.+..
T Consensus 85 LQ~~~~P~~vL~EmlR 100 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLR 100 (193)
T ss_pred HHhHhHHHHHHHHHHH
Confidence 9999998888887754
No 163
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.36 E-value=3.4e-06 Score=69.85 Aligned_cols=100 Identities=17% Similarity=0.082 Sum_probs=78.7
Q ss_pred HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcce--EEEcC-----C
Q 031506 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--LLMTS-----L 128 (158)
Q Consensus 56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~~d-----~ 128 (158)
..+|..+.+-..-.+|..|||=-||||.+-+.+...|++++++|++.. |+.-++.|++..++... ...+| .
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~--mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDER--MVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHH--HHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 356666666555567889999999999999999999999999999976 99999999998875421 12212 2
Q ss_pred ---CCcEEEecCCCCCcc----------HHHHHHHHHHHhcC
Q 031506 129 ---PPSHICSRVLQDQSS----------LRLIIIEVGIILLS 157 (158)
Q Consensus 129 ---~fD~Ii~d~iy~~~~----------~~~ll~tl~~ll~~ 157 (158)
.+|.|+.||+|-... +...+++++..|.+
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~ 302 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKP 302 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhc
Confidence 499999999998766 67777777777654
No 164
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.36 E-value=3.3e-06 Score=67.68 Aligned_cols=59 Identities=12% Similarity=0.118 Sum_probs=42.3
Q ss_pred CCCeEEEeccCCCHHHHHHhhc-----CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------CCCCcEEE
Q 031506 70 SGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------SLPPSHIC 134 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~-----g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------d~~fD~Ii 134 (158)
...+|||+|||+|..+..+++. +..|+++|+++. |++.++++.. + +.+... +..||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~--~l~~A~~~~~--~--~~~~~~d~~~lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKV--AIKYAAKRYP--Q--VTFCVASSHRLPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHH--HHHHHHHhCC--C--CeEEEeecccCCCcCCceeEEE
Confidence 4568999999999999877654 237999999965 9988876532 1 222221 23799999
No 165
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=3.7e-06 Score=67.27 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=61.6
Q ss_pred HHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----CC----C
Q 031506 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----SL----P 129 (158)
Q Consensus 59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----d~----~ 129 (158)
.+.+.......++.+|||+|+|.|.++..+++++..|+++++++. +++.+++... ...+..+... |. .
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~--l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRR--LAEVLKERFA-PYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHH--HHHHHHHhcc-cccceEEEeCchhcCcchhhcC
Confidence 555655444445789999999999999999999999999999976 8888887765 1122333333 22 4
Q ss_pred CcEEEecCCCCCcc
Q 031506 130 PSHICSRVLQDQSS 143 (158)
Q Consensus 130 fD~Ii~d~iy~~~~ 143 (158)
++.|+++.+|+..+
T Consensus 96 ~~~vVaNlPY~Iss 109 (259)
T COG0030 96 PYKVVANLPYNISS 109 (259)
T ss_pred CCEEEEcCCCcccH
Confidence 67888999999876
No 166
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.33 E-value=4.4e-06 Score=71.76 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=55.0
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC------CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcCC-------CCcEEE
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG------SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTSL-------PPSHIC 134 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g------~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d~-------~fD~Ii 134 (158)
+++.|+++|||+|.++..+++.+ .+|+|++-++. ++..+++.++.|+.. +++...|+ +.|+||
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~--A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN--AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV 263 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH--HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh--HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence 46789999999999998877765 39999999975 676777777788764 55555543 899999
Q ss_pred ecCCC---CCccHHHHHHHHHHH
Q 031506 135 SRVLQ---DQSSLRLIIIEVGII 154 (158)
Q Consensus 135 ~d~iy---~~~~~~~ll~tl~~l 154 (158)
|+.+- ..+..++.+......
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rf 286 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRF 286 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGG
T ss_pred EeccCCccccccCHHHHHHHHhh
Confidence 77763 344555555544433
No 167
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.32 E-value=1.3e-06 Score=71.14 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=43.7
Q ss_pred CCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHc-CCcceE--EEc-------------CCCCcE
Q 031506 71 GANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRL--LMT-------------SLPPSH 132 (158)
Q Consensus 71 ~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~n~~~n-~~~~~~--~~~-------------d~~fD~ 132 (158)
..++||+|+| +.+..++.++ .|.++++||+++. .++.+++|++.| ++.-++ ... +..||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~--sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPK--SLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HH--HHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHH--HHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 4689999999 5576776555 5779999999975 999999999999 776333 211 127999
Q ss_pred EEecCCCCCccHHH
Q 031506 133 ICSRVLQDQSSLRL 146 (158)
Q Consensus 133 Ii~d~iy~~~~~~~ 146 (158)
.+|+|+||.+.-+.
T Consensus 181 tmCNPPFy~s~~e~ 194 (299)
T PF05971_consen 181 TMCNPPFYSSQEEA 194 (299)
T ss_dssp EEE-----SS----
T ss_pred EecCCccccChhhh
Confidence 99888887766443
No 168
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.30 E-value=8.4e-06 Score=65.42 Aligned_cols=86 Identities=13% Similarity=0.025 Sum_probs=59.0
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcC-----CcceEEEcC---------CCCcEE
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK-----LNCRLLMTS---------LPPSHI 133 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~-----~~~~~~~~d---------~~fD~I 133 (158)
++++||++|||+|.++..+++.. .+++++|+++. +++.++++....+ .++++...| .+||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~--vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEK--VIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHH--HHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 45699999999999888776664 48999999965 8999998875421 223443333 389999
Q ss_pred EecCCCCC---cc--HHHHHHHHHHHhcC
Q 031506 134 CSRVLQDQ---SS--LRLIIIEVGIILLS 157 (158)
Q Consensus 134 i~d~iy~~---~~--~~~ll~tl~~ll~~ 157 (158)
++|+.... .. ..++++.++.+|.+
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~p 178 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNE 178 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCC
Confidence 96664222 11 35666777766654
No 169
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=2.1e-06 Score=73.96 Aligned_cols=111 Identities=11% Similarity=0.104 Sum_probs=79.6
Q ss_pred eEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506 35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (158)
Q Consensus 35 ~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~ 114 (158)
++++|..+....+.. ..+.+|-.++..+...-.++.++|+.||||++|+.+|+...+|+++++++. +++-+++|+
T Consensus 351 ltF~iSp~AFFQ~Nt---~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~--aV~dA~~nA 425 (534)
T KOG2187|consen 351 LTFRISPGAFFQTNT---SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPD--AVEDAEKNA 425 (534)
T ss_pred eEEEECCchhhccCc---HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChh--hcchhhhcc
Confidence 445554433333333 478888888888776667789999999999999999999889999999976 999999999
Q ss_pred HHcCCc-ceEEEc---CC----------CCcEEE-ecCCCCCccHHHHHHHH
Q 031506 115 EMNKLN-CRLLMT---SL----------PPSHIC-SRVLQDQSSLRLIIIEV 151 (158)
Q Consensus 115 ~~n~~~-~~~~~~---d~----------~fD~Ii-~d~iy~~~~~~~ll~tl 151 (158)
+.|++. +++... |. .-+++. .||.- ...+..+++.+
T Consensus 426 ~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l 476 (534)
T KOG2187|consen 426 QINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKAL 476 (534)
T ss_pred hhcCccceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHH
Confidence 999985 444433 11 335555 88875 33344444433
No 170
>PRK03612 spermidine synthase; Provisional
Probab=98.24 E-value=5.9e-06 Score=72.18 Aligned_cols=86 Identities=16% Similarity=0.038 Sum_probs=59.1
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHH---c-----CCcceEEEcC---------CCC
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM---N-----KLNCRLLMTS---------LPP 130 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~---n-----~~~~~~~~~d---------~~f 130 (158)
++++||++|||+|..+..+.+.. .+|+++|+++. +++.+++|... | .-++++...| .+|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~--vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA--MTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH--HHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 56799999999999999877765 49999999975 99999986422 1 1223444333 289
Q ss_pred cEEEecCCCCCc------cHHHHHHHHHHHhcC
Q 031506 131 SHICSRVLQDQS------SLRLIIIEVGIILLS 157 (158)
Q Consensus 131 D~Ii~d~iy~~~------~~~~ll~tl~~ll~~ 157 (158)
|+|++|+..... ..+++++.++..|..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p 407 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP 407 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC
Confidence 999977654321 123566666666654
No 171
>PRK01581 speE spermidine synthase; Validated
Probab=98.24 E-value=5.7e-06 Score=69.21 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=56.8
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHH---Hc-----CCcceEEEcC---------CCC
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE---MN-----KLNCRLLMTS---------LPP 130 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~---~n-----~~~~~~~~~d---------~~f 130 (158)
..++||++|||+|.....+.+.. .+|+++|+++. +++.+++.-. .+ .-++++...| .+|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpe--VIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGS--MINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 56799999999999888777765 49999999965 9999886211 11 2234444333 279
Q ss_pred cEEEecCCCCCc------cHHHHHHHHHHHhcC
Q 031506 131 SHICSRVLQDQS------SLRLIIIEVGIILLS 157 (158)
Q Consensus 131 D~Ii~d~iy~~~------~~~~ll~tl~~ll~~ 157 (158)
|+|+.|+.-... ...++++.++..|.+
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP 260 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTE 260 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCC
Confidence 999977542211 124566666666654
No 172
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.23 E-value=3.6e-06 Score=65.27 Aligned_cols=84 Identities=18% Similarity=0.141 Sum_probs=65.9
Q ss_pred eEEEeccCCCHHHHHHh-hcCCEEEEEecCChHHHHHHHHHHHHHcCC-cce-EEEc---------CCCCcEEE-ecCCC
Q 031506 73 NVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCR-LLMT---------SLPPSHIC-SRVLQ 139 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~-~~~~---------d~~fD~Ii-~d~iy 139 (158)
.|||+|||||.---..- +.+..|+++|-++. |-+.+.+.+..+.- ++. +... |.++|.|+ .-++.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~--mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEK--MEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHH--HHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 57999999997654332 35679999999976 88888888887742 222 2222 44899999 99999
Q ss_pred CCccHHHHHHHHHHHhcCC
Q 031506 140 DQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 140 ~~~~~~~ll~tl~~ll~~~ 158 (158)
..++....|+.+..+|.++
T Consensus 157 Sve~~~k~L~e~~rlLRpg 175 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPG 175 (252)
T ss_pred ccCCHHHHHHHHHHhcCCC
Confidence 9999999999999999764
No 173
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.23 E-value=1.9e-05 Score=61.23 Aligned_cols=34 Identities=26% Similarity=0.116 Sum_probs=28.9
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~ 102 (158)
.++.+|||||||||..+..+++.. ..|+++|+++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 467799999999999999777753 4899999986
No 174
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.23 E-value=1.8e-05 Score=59.95 Aligned_cols=47 Identities=21% Similarity=0.107 Sum_probs=35.2
Q ss_pred HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCCh
Q 031506 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR 103 (158)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~ 103 (158)
.+.+...+.....++.+|||+|||+|.++..++++. .+|+++|+++.
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 344444444445578899999999999999777653 37999999973
No 175
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.20 E-value=4.3e-06 Score=65.37 Aligned_cols=102 Identities=15% Similarity=0.039 Sum_probs=70.7
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHH-HHHHHcC------C------
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR-RVCEMNK------L------ 119 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~-~n~~~n~------~------ 119 (158)
.....|.+|+.. .....+.+||..|||.|.-.+.+|.+|.+|+++|+++. +++.+. +|..... .
T Consensus 21 ~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~--Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 21 EPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPT--AIEQAFEENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp TSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HH--HHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred CCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHH--HHHHHHHHhccCCCcccccceeeecCC
Confidence 446778888776 23345669999999999999999999999999999975 787663 2221111 0
Q ss_pred cceEEEcCC---------CCcEEE---ecCCCCCccHHHHHHHHHHHhcC
Q 031506 120 NCRLLMTSL---------PPSHIC---SRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 120 ~~~~~~~d~---------~fD~Ii---~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
.+.++..|. +||+|+ +-|--.++..+.-.+.+..||.+
T Consensus 98 ~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p 147 (218)
T PF05724_consen 98 RITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP 147 (218)
T ss_dssp SEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE
T ss_pred ceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC
Confidence 123444443 699999 44445677888888888888765
No 176
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.19 E-value=1.8e-05 Score=71.38 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcccC-CCCCeEEEeccCCCHHHHHHhhc------------------------------------------
Q 031506 55 SVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKV------------------------------------------ 91 (158)
Q Consensus 55 ~~~la~~l~~~~~~-~~~~~vLELG~GtGl~~i~~a~~------------------------------------------ 91 (158)
...||.-|...... ..+..++|-+||+|.+.|.+|..
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 45677766654332 35679999999999999977652
Q ss_pred --CCEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcCC----------CCcEEEecCCCCCc
Q 031506 92 --GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTSL----------PPSHICSRVLQDQS 142 (158)
Q Consensus 92 --g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d~----------~fD~Ii~d~iy~~~ 142 (158)
..+++++|+++. +++.+++|+..+++.. .+...|. .||+|++||+|...
T Consensus 254 ~~~~~i~G~Did~~--av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r 316 (702)
T PRK11783 254 ELPSKFYGSDIDPR--VIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER 316 (702)
T ss_pred ccCceEEEEECCHH--HHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence 126999999965 9999999999998853 3433332 49999999999643
No 177
>PRK10742 putative methyltransferase; Provisional
Probab=98.18 E-value=1.1e-05 Score=64.21 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=56.9
Q ss_pred eEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc------C--C--cceEEEcC---------CCCcEE
Q 031506 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN------K--L--NCRLLMTS---------LPPSHI 133 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n------~--~--~~~~~~~d---------~~fD~I 133 (158)
+|||+=||+|..|+.++.+|++|+++|.++. +...++.|++.. + + +..+...| ..||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~--vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPV--VAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999999999999999999975 778888888863 1 1 12233222 179999
Q ss_pred EecCCCCCccHHH
Q 031506 134 CSRVLQDQSSLRL 146 (158)
Q Consensus 134 i~d~iy~~~~~~~ 146 (158)
+.||+|....-.+
T Consensus 169 YlDPMfp~~~ksa 181 (250)
T PRK10742 169 YLDPMFPHKQKSA 181 (250)
T ss_pred EECCCCCCCcccc
Confidence 9999999876444
No 178
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.17 E-value=1e-05 Score=67.07 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=62.6
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceE--EEcCC--------CCcEEE-ecC
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMTSL--------PPSHIC-SRV 137 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~d~--------~fD~Ii-~d~ 137 (158)
.|.+|+|+-||.|-+++.+|+.|+ .|+++|+++. +++.+++|+++|++...+ ...|. .+|-|+ .-|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~--A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPD--AVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHH--HHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 588999999999999999999998 4999999965 999999999999987654 33332 599999 545
Q ss_pred CCCCccHHHHHHHH
Q 031506 138 LQDQSSLRLIIIEV 151 (158)
Q Consensus 138 iy~~~~~~~ll~tl 151 (158)
.......+..++.+
T Consensus 266 ~~a~~fl~~A~~~~ 279 (341)
T COG2520 266 KSAHEFLPLALELL 279 (341)
T ss_pred CcchhhHHHHHHHh
Confidence 44455555554443
No 179
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.9e-05 Score=62.76 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=59.8
Q ss_pred CCCCCeEEEeccCCCHHHHHHhh-cCC--EEEEEecCChHHHHHHHHHHHHHcCCcceEE--EcCC-------CCcEEEe
Q 031506 68 RFSGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL--MTSL-------PPSHICS 135 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a~-~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~--~~d~-------~fD~Ii~ 135 (158)
..++.+|||.|.|+|.++..++. .|. +|+..|+.+. .++.+++|++..++..+++ ..|. .||.|+.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d--~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRED--FAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHH--HHHHHHHHHHHhccccceEEEeccccccccccccCEEEE
Confidence 45789999999999999998886 343 8999999975 9999999999876544332 2222 8999997
Q ss_pred cCCCCCccHHHHHHHHHHHhc
Q 031506 136 RVLQDQSSLRLIIIEVGIILL 156 (158)
Q Consensus 136 d~iy~~~~~~~ll~tl~~ll~ 156 (158)
|.+-. ...+..++.+|+
T Consensus 170 Dmp~P----W~~le~~~~~Lk 186 (256)
T COG2519 170 DLPDP----WNVLEHVSDALK 186 (256)
T ss_pred cCCCh----HHHHHHHHHHhC
Confidence 76533 333444444443
No 180
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.10 E-value=2.7e-05 Score=62.62 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=69.9
Q ss_pred CCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc--ceE
Q 031506 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRL 123 (158)
Q Consensus 46 ~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~ 123 (158)
+.|-++-..+.++..-+... ...++..|||+|-|||.++..+...|++|+|++.++. |+..+++..+--... .++
T Consensus 35 d~GQHilkNp~v~~~I~~ka-~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dpr--mvael~krv~gtp~~~kLqV 111 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVEKA-DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPR--MVAELEKRVQGTPKSGKLQV 111 (315)
T ss_pred ccchhhhcCHHHHHHHHhcc-CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcH--HHHHHHHHhcCCCccceeeE
Confidence 35555555666666655443 3346678999999999999999999999999999986 888888777644322 233
Q ss_pred E-----EcCC-CCcEEEecCCCCCcc
Q 031506 124 L-----MTSL-PPSHICSRVLQDQSS 143 (158)
Q Consensus 124 ~-----~~d~-~fD~Ii~d~iy~~~~ 143 (158)
. ..|+ .||.+|++.+|..++
T Consensus 112 ~~gD~lK~d~P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 112 LHGDFLKTDLPRFDGCVSNLPYQISS 137 (315)
T ss_pred EecccccCCCcccceeeccCCccccC
Confidence 3 3354 789999999998876
No 181
>PLN02366 spermidine synthase
Probab=98.08 E-value=4.3e-05 Score=62.71 Aligned_cols=85 Identities=11% Similarity=0.020 Sum_probs=57.3
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHc-----CCcceEEEcC----------CCCcE
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRLLMTS----------LPPSH 132 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~~d----------~~fD~ 132 (158)
+.++||++|||.|.+...+++.. .+|+++|+++. +++.+++..... .-++++...| .+||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~--Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKM--VIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHH--HHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 46899999999999998888764 38999999964 999999877531 2234444333 27999
Q ss_pred EEecCCCC--Cc---cHHHHHHHHHHHhc
Q 031506 133 ICSRVLQD--QS---SLRLIIIEVGIILL 156 (158)
Q Consensus 133 Ii~d~iy~--~~---~~~~ll~tl~~ll~ 156 (158)
|+.|..-. .. ...++++.++..|.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~ 197 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALR 197 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcC
Confidence 99554321 11 12455666665554
No 182
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.07 E-value=1.5e-05 Score=63.48 Aligned_cols=77 Identities=12% Similarity=0.012 Sum_probs=56.3
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCcceE--EEc---------------CC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL--LMT---------------SL 128 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~~---------------d~ 128 (158)
.+.++|||+|+++|..++.+|+. +.+|+.+|.++. ..+.+++|++..++..++ ... ..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~--~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRE--NYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHH--HHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 46779999999999999977753 459999999964 889999999988865332 221 13
Q ss_pred CCcEEE--ecCCCCCccHHHH
Q 031506 129 PPSHIC--SRVLQDQSSLRLI 147 (158)
Q Consensus 129 ~fD~Ii--~d~iy~~~~~~~l 147 (158)
+||+|+ +|--.|...++.+
T Consensus 156 ~fD~iFiDadK~~Y~~y~~~~ 176 (247)
T PLN02589 156 TFDFIFVDADKDNYINYHKRL 176 (247)
T ss_pred cccEEEecCCHHHhHHHHHHH
Confidence 799999 6644444444433
No 183
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=6.4e-06 Score=66.03 Aligned_cols=110 Identities=22% Similarity=0.229 Sum_probs=75.9
Q ss_pred CCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc---CCcc
Q 031506 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN---KLNC 121 (158)
Q Consensus 45 ~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n---~~~~ 121 (158)
..+|..+|+++..|.+++.+.+....+.++.++|||.++..+.+++...-|...+-... +.-+...+...+ ....
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~ 142 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRC--AGLLLEEIILLSRDLSLEV 142 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCccCc--HHHHHHHHHhccccccccc
Confidence 36899999999999999999887778899999999999999777776544444444332 222222222222 1111
Q ss_pred eE-----------EEc---CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcC
Q 031506 122 RL-----------LMT---SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 122 ~~-----------~~~---d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
+. ... ...+|+|+ +|++|. ....+++.++..+|+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~ 192 (262)
T KOG2497|consen 143 RDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLR 192 (262)
T ss_pred cccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHHh
Confidence 10 000 11589999 999999 8888889888887753
No 184
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.04 E-value=1e-05 Score=64.65 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=63.4
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcc----eEEEcCCCCcEEE-ecCCCCCccH
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC----RLLMTSLPPSHIC-SRVLQDQSSL 144 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~----~~~~~d~~fD~Ii-~d~iy~~~~~ 144 (158)
+..++||||||.|-++..++....+|++|+.|.. |...++ ..+..+ .....+.+||+|. .+++=.....
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~--Mr~rL~----~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPP--MRWRLS----KKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHH--HHHHHH----hCCCeEEehhhhhccCCceEEEeehhhhhccCCH
Confidence 5568999999999999999999899999999964 654433 333321 1111234899999 9999999999
Q ss_pred HHHHHHHHHHhcC
Q 031506 145 RLIIIEVGIILLS 157 (158)
Q Consensus 145 ~~ll~tl~~ll~~ 157 (158)
-.|++.++.-|.+
T Consensus 168 ~~LL~~i~~~l~p 180 (265)
T PF05219_consen 168 LTLLRDIRRALKP 180 (265)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999887654
No 185
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.03 E-value=8.8e-06 Score=63.73 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=37.2
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~ 112 (158)
...-|||+|||||+.|-.+...|...+++|+|+. |++.+.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSps--ML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPS--MLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHH--HHHHHHH
Confidence 5668999999999999999999999999999975 9998775
No 186
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.03 E-value=5.4e-05 Score=60.49 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=75.5
Q ss_pred CCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--------CCEEEEEecCChHHHHHHHHHHHHHc
Q 031506 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------GSNVTLTDDSNRIEVLKNMRRVCEMN 117 (158)
Q Consensus 46 ~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--------g~~v~~tD~~~~~~~l~~~~~n~~~n 117 (158)
...+++|.. .+..++ ....+.++||++||||-++..+.+. ..+|++.|+++. ||...++.....
T Consensus 82 lGiHRlWKd--~~v~~L----~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~--mL~vgkqRa~~~ 153 (296)
T KOG1540|consen 82 LGIHRLWKD--MFVSKL----GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH--MLAVGKQRAKKR 153 (296)
T ss_pred cchhHHHHH--Hhhhcc----CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH--HHHHHHHHHhhc
Confidence 456678832 222222 3346689999999999988866543 258999999965 999988888766
Q ss_pred CCcce---EEEc---------CCCCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506 118 KLNCR---LLMT---------SLPPSHIC-SRVLQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 118 ~~~~~---~~~~---------d~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~ 158 (158)
++... .|.. |..||... +=-|-+..+.+..+++.+..|+.+
T Consensus 154 ~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 154 PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG 207 (296)
T ss_pred CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence 65422 2222 22788887 888888899999999999888764
No 187
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.01 E-value=2.3e-05 Score=68.40 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=51.8
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC----------CEEEEEecCChHHHHHHHHHHHHHcC-CcceEEEc-----------C
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG----------SNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRLLMT-----------S 127 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g----------~~v~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~~-----------d 127 (158)
...+|||.|||+|.+.+.++.+. .++++.|+++. ++..++.|+...+ ....+... +
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~--a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKT--LLKRAKKLLGEFALLEINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHH--HHHHHHHHHhhcCCCCceeeeccccccccccccc
Confidence 45689999999999998766432 37899999965 8999999987654 22222111 1
Q ss_pred --CCCcEEEecCCCCCc
Q 031506 128 --LPPSHICSRVLQDQS 142 (158)
Q Consensus 128 --~~fD~Ii~d~iy~~~ 142 (158)
.+||+||++|+|-..
T Consensus 109 ~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 109 YLDLFDIVITNPPYGRL 125 (524)
T ss_pred ccCcccEEEeCCCcccc
Confidence 279999999998853
No 188
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.96 E-value=2.6e-05 Score=63.42 Aligned_cols=86 Identities=7% Similarity=-0.024 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhh---------cCCEEEEEecCChHHHHHHHHHHHHHcCCcce---
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK---------VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--- 122 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~---------~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~--- 122 (158)
...++++|.+......+.+|+|-.||+|.+-+.+.+ ...++++.|+++. ++..++.|+..++....
T Consensus 31 P~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~--~~~la~~nl~l~~~~~~~~~ 108 (311)
T PF02384_consen 31 PREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPE--AVALAKLNLLLHGIDNSNIN 108 (311)
T ss_dssp -HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HH--HHHHHHHHHHHTTHHCBGCE
T ss_pred HHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHH--HHHHHHhhhhhhcccccccc
Confidence 345566666544445677899999999998887665 3458999999965 88888889887765432
Q ss_pred EEEcC----------CCCcEEEecCCCCCc
Q 031506 123 LLMTS----------LPPSHICSRVLQDQS 142 (158)
Q Consensus 123 ~~~~d----------~~fD~Ii~d~iy~~~ 142 (158)
+...| .+||+|+++|+|...
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCE
T ss_pred ccccccccccccccccccccccCCCCcccc
Confidence 33332 279999988887765
No 189
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.94 E-value=9.6e-05 Score=58.50 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=69.4
Q ss_pred CCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHcCCcceE
Q 031506 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL 123 (158)
Q Consensus 46 ~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~ 123 (158)
.-+...++.+..-+.|+.++ .++.|++||=+|=+ =+.|++++. ...+|+++|+++. +++.+++.++..+++++.
T Consensus 21 DQ~~~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeR--ll~fI~~~a~~~gl~i~~ 96 (243)
T PF01861_consen 21 DQGYATPETTLRRAALMAER-GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDER--LLDFINRVAEEEGLPIEA 96 (243)
T ss_dssp T---B-HHHHHHHHHHHHHT-T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HH--HHHHHHHHHHHHT--EEE
T ss_pred ccccccHHHHHHHHHHHHhc-CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHH--HHHHHHHHHHHcCCceEE
Confidence 35667888898889988875 45789999999954 567776554 3459999999986 999999999999988877
Q ss_pred EEcCC----------CCcEEEecCCCCCccHHHHHHHHHHHh
Q 031506 124 LMTSL----------PPSHICSRVLQDQSSLRLIIIEVGIIL 155 (158)
Q Consensus 124 ~~~d~----------~fD~Ii~d~iy~~~~~~~ll~tl~~ll 155 (158)
...|. +||+++.||+|-.+-+.-+++.-...|
T Consensus 97 ~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~L 138 (243)
T PF01861_consen 97 VHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEAL 138 (243)
T ss_dssp E---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB
T ss_pred EEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 76654 899999999999988888777654443
No 190
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.94 E-value=5.6e-05 Score=60.21 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=59.7
Q ss_pred ccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC-----------CC
Q 031506 66 RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS-----------LP 129 (158)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d-----------~~ 129 (158)
....+|.+|||-|.|+|.++..+++. | .+|+..|..+. ..+.+++|++.+++. +.+...| ..
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~--~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRED--RAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHH--HHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHH--HHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence 34558999999999999999988864 3 39999999965 999999999998875 3343332 25
Q ss_pred CcEEEecCCCCCccHHHHHHHH
Q 031506 130 PSHICSRVLQDQSSLRLIIIEV 151 (158)
Q Consensus 130 fD~Ii~d~iy~~~~~~~ll~tl 151 (158)
+|.|+.|.+--...++.+.+.|
T Consensus 114 ~DavfLDlp~Pw~~i~~~~~~L 135 (247)
T PF08704_consen 114 FDAVFLDLPDPWEAIPHAKRAL 135 (247)
T ss_dssp EEEEEEESSSGGGGHHHHHHHE
T ss_pred ccEEEEeCCCHHHHHHHHHHHH
Confidence 7999988877666666555443
No 191
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.92 E-value=0.0001 Score=61.18 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhcc-------cCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 54 CSVILAEYVWQQR-------YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 54 ~~~~la~~l~~~~-------~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
++..|.+.+.... ...++.++|||||++|..+-.+.++|+.|+++|..+ |-..+ ..+ ..+.....
T Consensus 188 s~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~---l~~~L----~~~-~~V~h~~~ 259 (357)
T PRK11760 188 STLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP---MAQSL----MDT-GQVEHLRA 259 (357)
T ss_pred HHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh---cCHhh----hCC-CCEEEEec
Confidence 4555555544432 235788999999999999999999999999999764 33322 222 22222222
Q ss_pred --------CCCCcEEEecCCCCCccHHHHHHH
Q 031506 127 --------SLPPSHICSRVLQDQSSLRLIIIE 150 (158)
Q Consensus 127 --------d~~fD~Ii~d~iy~~~~~~~ll~t 150 (158)
..++|++++|.+-++.....++..
T Consensus 260 d~fr~~p~~~~vDwvVcDmve~P~rva~lm~~ 291 (357)
T PRK11760 260 DGFKFRPPRKNVDWLVCDMVEKPARVAELMAQ 291 (357)
T ss_pred cCcccCCCCCCCCEEEEecccCHHHHHHHHHH
Confidence 226899999999888876666654
No 192
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.89 E-value=7.6e-05 Score=59.65 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC----CC
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL----PP 130 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~----~f 130 (158)
..-+++.+.+.....++..|||+|+|+|.++..+++.+.+|+++|.++. +++.+++... ..-++.+...|. .+
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~--~~~~L~~~~~-~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPD--LAKHLKERFA-SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHH--HHHHHHHHCT-TCSSEEEEES-TTTSCGG
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHh--HHHHHHHHhh-hcccceeeecchhccccH
Confidence 3445555555444447889999999999999999999999999999965 8888887665 333455555543 22
Q ss_pred -------cEEEecCCCCCccHHHHHHHH
Q 031506 131 -------SHICSRVLQDQSSLRLIIIEV 151 (158)
Q Consensus 131 -------D~Ii~d~iy~~~~~~~ll~tl 151 (158)
..|+++.+|+.. .+++..+
T Consensus 92 ~~~~~~~~~vv~NlPy~is--~~il~~l 117 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPYNIS--SPILRKL 117 (262)
T ss_dssp GHCSSSEEEEEEEETGTGH--HHHHHHH
T ss_pred HhhcCCceEEEEEecccch--HHHHHHH
Confidence 244488888543 3444443
No 193
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.85 E-value=0.00015 Score=56.80 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=55.9
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----CCcEEE-ecCCCC-
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----PPSHIC-SRVLQD- 140 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----~fD~Ii-~d~iy~- 140 (158)
+.++|||||+|+|..++.+++.. .++++.|+ |++++.+++ .-++++...|. .+|+|+ ..++++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl---p~v~~~~~~-----~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL---PEVIEQAKE-----ADRVEFVPGDFFDPLPVADVYLLRHVLHDW 171 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE----HHHHCCHHH-----TTTEEEEES-TTTCCSSESEEEEESSGGGS
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc---Hhhhhcccc-----ccccccccccHHhhhccccceeeehhhhhc
Confidence 44689999999999999887764 48999999 457887777 33455555543 599999 999965
Q ss_pred -CccHHHHHHHHHHHhc
Q 031506 141 -QSSLRLIIIEVGIILL 156 (158)
Q Consensus 141 -~~~~~~ll~tl~~ll~ 156 (158)
.+....+|+.++.-+.
T Consensus 172 ~d~~~~~iL~~~~~al~ 188 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALK 188 (241)
T ss_dssp -HHHHHHHHHHHHHHSE
T ss_pred chHHHHHHHHHHHHHhC
Confidence 4556667777766554
No 194
>PHA01634 hypothetical protein
Probab=97.79 E-value=0.00011 Score=52.97 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=54.8
Q ss_pred cCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-CC-----CCcEEEecC
Q 031506 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-SL-----PPSHICSRV 137 (158)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-d~-----~fD~Ii~d~ 137 (158)
.++++++|+|+|++.|-.+|-.+.+|+ .|++.+.++. ..+..+.|++.|.+-...... +| +||+.+.||
T Consensus 25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~k--l~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~iDC 100 (156)
T PHA01634 25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEK--LRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVMDC 100 (156)
T ss_pred eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHH--HHHHHHHHhhhheeeeceeecccccccCCCcceEEEEc
Confidence 357899999999999999999999998 8999999976 888999999998764333222 33 788776444
No 195
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00016 Score=60.79 Aligned_cols=85 Identities=9% Similarity=-0.016 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-----------------------------------------
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS----------------------------------------- 93 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~----------------------------------------- 93 (158)
-..||.-|........+..++|-=||+|.+.|.+|..+.
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 455666666655555667899999999999998888764
Q ss_pred EEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcCC--------CCcEEEecCCCCC
Q 031506 94 NVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTSL--------PPSHICSRVLQDQ 141 (158)
Q Consensus 94 ~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d~--------~fD~Ii~d~iy~~ 141 (158)
.+++.|+++. +++.++.|+...++.. .+...|. .+|+||+||+|-.
T Consensus 256 ~~~G~Did~r--~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGe 311 (381)
T COG0116 256 IIYGSDIDPR--HIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGE 311 (381)
T ss_pred eEEEecCCHH--HHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcch
Confidence 3779999976 9999999999999873 3444432 6899999999975
No 196
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.76 E-value=5.9e-05 Score=54.11 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=40.1
Q ss_pred eEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (158)
.+||+|||.|..++.+++.+. +|+++|.++. +++.+++|++.|+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~--~~~~l~~~~~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD--AYEILEENVKLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH--HHHHHHHHHHHcCCC
Confidence 389999999999998888776 6999999965 999999999988753
No 197
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.67 E-value=0.0002 Score=51.97 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=38.0
Q ss_pred CCCCeEEEeccCCCHHHHHHhh------cCCEEEEEecCChHHHHHHHHHHHHHcC
Q 031506 69 FSGANVVELGAGTSLPGLVAAK------VGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~------~g~~v~~tD~~~~~~~l~~~~~n~~~n~ 118 (158)
.+..+|+|+|||-|.+|..++. .+.+|+++|.++. .++.+++..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~--~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNES--LVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcH--HHHHHHHHHHHhc
Confidence 4667999999999999998887 4569999999975 6776666555433
No 198
>PLN02823 spermine synthase
Probab=97.65 E-value=0.00037 Score=57.88 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=49.8
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcC-----CcceEEEcC---------CCCcEE
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK-----LNCRLLMTS---------LPPSHI 133 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~-----~~~~~~~~d---------~~fD~I 133 (158)
..++||.+|+|.|..+..+.+.. .+|+++|+++. +++.++++...++ -++++...| .+||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~--vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE--VVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH--HHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 46799999999999998766643 48999999965 9999999876542 234444333 389999
Q ss_pred EecC
Q 031506 134 CSRV 137 (158)
Q Consensus 134 i~d~ 137 (158)
+.|+
T Consensus 181 i~D~ 184 (336)
T PLN02823 181 IGDL 184 (336)
T ss_pred EecC
Confidence 9774
No 199
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.63 E-value=0.00036 Score=52.59 Aligned_cols=91 Identities=21% Similarity=0.150 Sum_probs=62.7
Q ss_pred ecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHH-cCCcceEEEc
Q 031506 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEM-NKLNCRLLMT 126 (158)
Q Consensus 51 vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~~ 126 (158)
+=|++-.+|+-|...-..-++..|||+|.|||.++-.+.++|. .+++++++++ .+..+.+.-.. |-++..+...
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d--F~~~L~~~~p~~~ii~gda~~l 106 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD--FVCHLNQLYPGVNIINGDAFDL 106 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH--HHHHHHHhCCCccccccchhhH
Confidence 4588888899888866666888999999999999998888875 7999999975 66655543321 1111111111
Q ss_pred --------CCCCcEEE-ecCCCCCcc
Q 031506 127 --------SLPPSHIC-SRVLQDQSS 143 (158)
Q Consensus 127 --------d~~fD~Ii-~d~iy~~~~ 143 (158)
+..||.|+ +=|+-..+.
T Consensus 107 ~~~l~e~~gq~~D~viS~lPll~~P~ 132 (194)
T COG3963 107 RTTLGEHKGQFFDSVISGLPLLNFPM 132 (194)
T ss_pred HHHHhhcCCCeeeeEEeccccccCcH
Confidence 33799999 655544433
No 200
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.58 E-value=0.00013 Score=56.00 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=49.8
Q ss_pred CCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC------CCcEEEe
Q 031506 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL------PPSHICS 135 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~------~fD~Ii~ 135 (158)
...+-|||+|+|.++..+|+...+|++++.++. ....+++|++.++.. ..+...|. ..|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk--~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPK--RARLAEENLHVPGDVNWEVVVGDARDYDFENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcH--HHHHhhhcCCCCCCcceEEEecccccccccccceeHH
Confidence 357999999999999999999779999999986 788999999887753 44444443 4566663
No 201
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00012 Score=57.97 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=62.3
Q ss_pred eEEEeccCCCHHHHHHhhcC----CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------------CCcEEE-e
Q 031506 73 NVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------------PPSHIC-S 135 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a~~g----~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------------~fD~Ii-~ 135 (158)
+|||+|||.|....-+.+-. -.|.+.|.++. +++..++|...+..++....+|. .+|+|. -
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~--Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR--AIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChH--HHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 79999999999888665543 37999999976 99999999887765554444432 678766 3
Q ss_pred cCC--CCCccHHHHHHHHHHHhcCC
Q 031506 136 RVL--QDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 136 d~i--y~~~~~~~ll~tl~~ll~~~ 158 (158)
=++ -+++.....++.+..+|+++
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCC
Confidence 333 45677888888888888764
No 202
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.53 E-value=0.00053 Score=56.85 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=67.0
Q ss_pred EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHH-c------C---
Q 031506 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM-N------K--- 118 (158)
Q Consensus 50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~-n------~--- 118 (158)
.-|-.+.++..|+.......++.+|||||||-|.--.-..+.+. .++++|++.. .++.+++..+. . .
T Consensus 42 NNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~--si~ea~~Ry~~~~~~~~~~~~~~ 119 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEE--SIEEARERYKQLKKRNNSKQYRF 119 (331)
T ss_dssp HHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HH--HHHHHHHHHHHHHTSTT-HTSEE
T ss_pred hHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHH--HHHHHHHHHHHhccccccccccc
Confidence 35888888888887544444778999999998877666666654 9999999964 88877776621 1 0
Q ss_pred -CcceEEEcC--------------CCCcEEE-ecCCCCC----ccHHHHHHHHHHHhcC
Q 031506 119 -LNCRLLMTS--------------LPPSHIC-SRVLQDQ----SSLRLIIIEVGIILLS 157 (158)
Q Consensus 119 -~~~~~~~~d--------------~~fD~Ii-~d~iy~~----~~~~~ll~tl~~ll~~ 157 (158)
..+.....| .+||+|- --+++|. +....+++.++..|.+
T Consensus 120 ~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~ 178 (331)
T PF03291_consen 120 DFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP 178 (331)
T ss_dssp CCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred cchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 112222221 2799999 6667553 4456677777777654
No 203
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.48 E-value=0.0006 Score=55.73 Aligned_cols=46 Identities=7% Similarity=-0.094 Sum_probs=38.8
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
.++..+||.+||.|..+..+++.. .+|++.|.++. |++.+++++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~--al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPD--AIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHH--HHHHHHHhhcc
Confidence 356799999999999999887764 58999999964 99999888754
No 204
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.39 E-value=0.0011 Score=50.97 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=53.6
Q ss_pred eEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcC-----------CCCcEEE---e
Q 031506 73 NVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTS-----------LPPSHIC---S 135 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d-----------~~fD~Ii---~ 135 (158)
.+||+|||.|-..+.+|+.. ..++++|+... .+..+.+.+...++. +.+...| ..+|-|. -
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~--~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKK--RVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HH--HHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchH--HHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 79999999999999877764 49999999964 777777777766653 5555543 2566665 4
Q ss_pred cCCCCCcc-------HHHHHHHHHHHhcC
Q 031506 136 RVLQDQSS-------LRLIIIEVGIILLS 157 (158)
Q Consensus 136 d~iy~~~~-------~~~ll~tl~~ll~~ 157 (158)
|| +.... -++++..++.+|.+
T Consensus 98 DP-WpK~rH~krRl~~~~fl~~~~~~L~~ 125 (195)
T PF02390_consen 98 DP-WPKKRHHKRRLVNPEFLELLARVLKP 125 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEE
T ss_pred CC-CcccchhhhhcCCchHHHHHHHHcCC
Confidence 55 33332 46777777777654
No 205
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.32 E-value=0.0022 Score=55.54 Aligned_cols=84 Identities=10% Similarity=0.025 Sum_probs=60.5
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL 128 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~ 128 (158)
++|...+..+... ..++.+|||++||.|.=+..++.+ + ..|++.|+++. -++.+++|++..++. +.+...|.
T Consensus 98 ~sS~l~~~~L~~~--~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~--R~~~L~~nl~r~G~~nv~v~~~D~ 173 (470)
T PRK11933 98 ASSMLPVAALFAD--DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSAS--RVKVLHANISRCGVSNVALTHFDG 173 (470)
T ss_pred HHHHHHHHHhccC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCeEEEEeCch
Confidence 4555555555321 236789999999999988866654 2 38999999975 889999999998865 34443332
Q ss_pred ---------CCcEEEecCCCC
Q 031506 129 ---------PPSHICSRVLQD 140 (158)
Q Consensus 129 ---------~fD~Ii~d~iy~ 140 (158)
.||.|+.|++..
T Consensus 174 ~~~~~~~~~~fD~ILvDaPCS 194 (470)
T PRK11933 174 RVFGAALPETFDAILLDAPCS 194 (470)
T ss_pred hhhhhhchhhcCeEEEcCCCC
Confidence 699999777654
No 206
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.25 E-value=0.0023 Score=51.63 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=54.1
Q ss_pred cCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCC-cceEE-----E--cCC-CCcEEE
Q 031506 67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLL-----M--TSL-PPSHIC 134 (158)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~-----~--~d~-~fD~Ii 134 (158)
..+...+|||+|||+|....++... -.+++++|.++. |++..+.-+..... ....+ . .+. +.|+|+
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi 107 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPE--MLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVI 107 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHH--HHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEE
Confidence 4678889999999999766555432 238999999965 88766654432211 11101 0 011 569999
Q ss_pred -ecCCCCCccHHHHHHHHHHH
Q 031506 135 -SRVLQDQSSLRLIIIEVGII 154 (158)
Q Consensus 135 -~d~iy~~~~~~~ll~tl~~l 154 (158)
+.++...+. +...+.+..|
T Consensus 108 ~s~~L~EL~~-~~r~~lv~~L 127 (274)
T PF09243_consen 108 ASYVLNELPS-AARAELVRSL 127 (274)
T ss_pred EehhhhcCCc-hHHHHHHHHH
Confidence 999988777 5555555444
No 207
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.25 E-value=0.0029 Score=49.85 Aligned_cols=84 Identities=17% Similarity=-0.014 Sum_probs=62.1
Q ss_pred CeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcCC-----------CCcEEE--e
Q 031506 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTSL-----------PPSHIC--S 135 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d~-----------~fD~Ii--~ 135 (158)
..+||+|||.|-.-+..|+... .++++++... .+..+.+.+...++ ++++...|. ..|-|. .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~--~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVP--GVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehH--HHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 4799999999999998888865 7999999975 78888888888888 777765532 455555 3
Q ss_pred cCCCCCcc-------HHHHHHHHHHHhcC
Q 031506 136 RVLQDQSS-------LRLIIIEVGIILLS 157 (158)
Q Consensus 136 d~iy~~~~-------~~~ll~tl~~ll~~ 157 (158)
.-+++..- .++++++++..|..
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~ 156 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKP 156 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccC
Confidence 33344333 47788888887764
No 208
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.0025 Score=49.84 Aligned_cols=66 Identities=20% Similarity=0.407 Sum_probs=43.0
Q ss_pred CCeEEEeccCCCHHHHHHhhc--CCEEEEEecCCh-HHHHHHHHHHHHHcCCcceEEEc-------CCC-CcEEEecCC
Q 031506 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR-IEVLKNMRRVCEMNKLNCRLLMT-------SLP-PSHICSRVL 138 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~-~~~l~~~~~n~~~n~~~~~~~~~-------d~~-fD~Ii~d~i 138 (158)
+++++|+|+|.|.+|+.+|-. ..+|+.+|-... ...++.+.+-+..++ +.+... +.+ ||+|.|=.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n--v~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN--VEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC--eEEehhhHhhcccccccCcEEEeehc
Confidence 689999999999999987744 347999998875 123444444444433 333322 124 999995444
No 209
>PRK00536 speE spermidine synthase; Provisional
Probab=97.17 E-value=0.0034 Score=50.51 Aligned_cols=75 Identities=11% Similarity=-0.036 Sum_probs=54.7
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH-----cCCcceEEEc-----CCCCcEEEecCCC
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRLLMT-----SLPPSHICSRVLQ 139 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~~-----d~~fD~Ii~d~iy 139 (158)
+.++||=+|.|-|.....+.|...+|+++|+++. +++.+++-+.. +..++++... ..+||+||.|..|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~--Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~~ 149 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEK--ILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQEP 149 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHH--HHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCCC
Confidence 5689999999999999998888679999999975 89888883322 2223332221 1379999999887
Q ss_pred CCccHHH
Q 031506 140 DQSSLRL 146 (158)
Q Consensus 140 ~~~~~~~ 146 (158)
..+.++.
T Consensus 150 ~~~fy~~ 156 (262)
T PRK00536 150 DIHKIDG 156 (262)
T ss_pred ChHHHHH
Confidence 7555433
No 210
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.17 E-value=0.00089 Score=57.35 Aligned_cols=51 Identities=22% Similarity=0.396 Sum_probs=44.1
Q ss_pred CeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEE
Q 031506 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL 124 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (158)
..|||+|+|||++++++++.|+ .|++.+.-.. |.+.+++-...|+...++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkP--M~d~arkI~~kng~SdkI~ 119 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKP--MVDLARKIMHKNGMSDKIN 119 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhch--HHHHHHHHHhcCCCcccee
Confidence 3689999999999999999998 8999998864 9999999999998764443
No 211
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.15 E-value=0.00058 Score=54.34 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=40.9
Q ss_pred cCCCCCeEEEeccCCCHHHHHHhhc-CC-EEEEEecCChHHHHHHHHHHHHH
Q 031506 67 YRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~i~~a~~-g~-~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
..+.++.+||+||-+|.+++.+|+. |+ .|+++|+++. .++.+++|+..
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~--LI~~Ark~~r~ 104 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV--LIQRARKEIRF 104 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHH--HHHHHHHhccc
Confidence 4567889999999999999988775 54 8999999976 89999999753
No 212
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.13 E-value=0.0029 Score=49.05 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=57.3
Q ss_pred eEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc-------ceE----EEcC-------CCCcE
Q 031506 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-------CRL----LMTS-------LPPSH 132 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-------~~~----~~~d-------~~fD~ 132 (158)
+|||||||||--+..+|+.-. .-.-+|.++. .+..++..+...++. .++ |.+. ..||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~--~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDN--LRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChH--HHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 699999999999998877644 6667888864 556666666655432 111 1111 16999
Q ss_pred EE-ecCCCCC--ccHHHHHHHHHHHhcC
Q 031506 133 IC-SRVLQDQ--SSLRLIIIEVGIILLS 157 (158)
Q Consensus 133 Ii-~d~iy~~--~~~~~ll~tl~~ll~~ 157 (158)
|+ ++.++-. +..+.|++..+.+|.+
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~ 133 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKP 133 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCC
Confidence 99 8988664 4567788887777764
No 213
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.10 E-value=7.9e-05 Score=58.07 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=59.2
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCCCCcEEE-ecCCCCCccHHHH
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSLPPSHIC-SRVLQDQSSLRLI 147 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~~fD~Ii-~d~iy~~~~~~~l 147 (158)
.+.++||||+|-|-++...+...-+|.+|+++.. |...+++.- -|-+. ..-..-|.+||+|. .+.+=...+.-.|
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~t--Mr~rL~kk~-ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kL 188 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWT--MRDRLKKKN-YNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKL 188 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHH--HHHHHhhcC-CceeeehhhhhcCceeehHHHHHHHHhhcChHHH
Confidence 3479999999999999988887779999999975 776655311 01010 01111244899999 7887777777778
Q ss_pred HHHHHHHhcC
Q 031506 148 IIEVGIILLS 157 (158)
Q Consensus 148 l~tl~~ll~~ 157 (158)
++-+...+..
T Consensus 189 L~Di~~vl~p 198 (288)
T KOG3987|consen 189 LEDIHLVLAP 198 (288)
T ss_pred HHHHHHHhcc
Confidence 8877776654
No 214
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.09 E-value=0.00054 Score=56.92 Aligned_cols=72 Identities=19% Similarity=0.108 Sum_probs=56.7
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHH-------HHHHHHHHcCCcc---eEEEc---------CCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-------NMRRVCEMNKLNC---RLLMT---------SLP 129 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~-------~~~~n~~~n~~~~---~~~~~---------d~~ 129 (158)
.+|+.|.|=-.|||.+-+.+|..|+.|+++|++-. ++. +++.|.+..+... .+..+ ...
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr--~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYR--TVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchh--eeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 36788999999999999999999999999999964 554 5778888777442 22333 348
Q ss_pred CcEEEecCCCCCc
Q 031506 130 PSHICSRVLQDQS 142 (158)
Q Consensus 130 fD~Ii~d~iy~~~ 142 (158)
||.|++||+|-..
T Consensus 285 fDaIvcDPPYGVR 297 (421)
T KOG2671|consen 285 FDAIVCDPPYGVR 297 (421)
T ss_pred eeEEEeCCCcchh
Confidence 9999999999753
No 215
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.04 E-value=0.0018 Score=49.41 Aligned_cols=64 Identities=20% Similarity=0.397 Sum_probs=41.7
Q ss_pred eEEEeccCCCHHHHHHhhcC--CEEEEEecCCh-HHHHHHHHHHHHHcCCcceEEEc-------CCCCcEEEecCC
Q 031506 73 NVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR-IEVLKNMRRVCEMNKLNCRLLMT-------SLPPSHICSRVL 138 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~-~~~l~~~~~n~~~n~~~~~~~~~-------d~~fD~Ii~d~i 138 (158)
+++|+|+|.|.+|+.+|-.. .+++++|-... ...++.+.+.+...+ +.+... ..+||+|++=.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n--v~v~~~R~E~~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN--VEVINGRAEEPEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS--EEEEES-HHHTTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC--EEEEEeeecccccCCCccEEEeehh
Confidence 79999999999999777654 38999999974 234444444444443 444332 238999995444
No 216
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.04 E-value=0.0011 Score=52.61 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=58.2
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCC---cceEEEc----------CCCCcEEEe
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCRLLMT----------SLPPSHICS 135 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~~----------d~~fD~Ii~ 135 (158)
++.+|||-+.|.|..++.+.++|+ +|+-++-++. .++.+.-|=-.-++ .+++... |..||+||-
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~--VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN--VLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC--eEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 688999999999999999999999 9999999986 78776655322111 1233322 348999998
Q ss_pred cCCCCCcc----HHHHHHHHHHHhc
Q 031506 136 RVLQDQSS----LRLIIIEVGIILL 156 (158)
Q Consensus 136 d~iy~~~~----~~~ll~tl~~ll~ 156 (158)
||+-..-. -+.+.+.+..+|.
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLk 236 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILK 236 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcC
Confidence 77633211 2344555555554
No 217
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.98 E-value=0.0043 Score=48.12 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=40.2
Q ss_pred EEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcce
Q 031506 74 VVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (158)
Q Consensus 74 vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~~ 122 (158)
|.|+||--|.+++.+.+.|. +++++|+++. -++.++.|++.+++..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~g--pL~~A~~~i~~~~l~~~ 49 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPG--PLEKAKENIAKYGLEDR 49 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHH--HHHHHHHHHHHTT-TTT
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHHcCCccc
Confidence 68999999999999999887 8999999976 79999999999886533
No 218
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0024 Score=50.55 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=49.2
Q ss_pred EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCCh
Q 031506 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (158)
Q Consensus 50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~ 103 (158)
.+-.+++-|...+....-.++++.+||+|+-||-++-.+.++|+ +|+++|....
T Consensus 59 yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~ 113 (245)
T COG1189 59 YVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG 113 (245)
T ss_pred ccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC
Confidence 34578999999999988889999999999999999999999988 9999999875
No 219
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0019 Score=50.43 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=47.9
Q ss_pred CceEecchHHHHHHHHHhccc--CCCCCeEEEeccCCCHHHHHHhhc----CCEEEEEecCChHHHHHHHHHHHHHc
Q 031506 47 YGLFVWPCSVILAEYVWQQRY--RFSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMN 117 (158)
Q Consensus 47 ~g~~vW~~~~~la~~l~~~~~--~~~~~~vLELG~GtGl~~i~~a~~----g~~v~~tD~~~~~~~l~~~~~n~~~n 117 (158)
.|+.+-=++..+=.++++... ..+|.+.||+|+|||.++-+++.+ |..++++|.-+ +.++.+++|+...
T Consensus 57 ~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~--eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 57 IGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP--ELVEYSKKNLDKD 131 (237)
T ss_pred cCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhH--HHHHHHHHHHHhh
Confidence 343333355555554444332 568999999999999998877753 33558888875 5999999998753
No 220
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.86 E-value=0.015 Score=47.26 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=56.5
Q ss_pred CeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcC-----CcceEEEcCC---------CCcEEEe
Q 031506 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNK-----LNCRLLMTSL---------PPSHICS 135 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~-----~~~~~~~~d~---------~fD~Ii~ 135 (158)
++||-+|-|.|.....+.+... +++++|+++. +++.+++-+..-. -++++...|. +||+|+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~--Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPA--VIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHH--HHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 6999999999999999988874 9999999975 8998888665422 2233333332 7999995
Q ss_pred cCCCCCc-----cHHHHHHHHHHHhc
Q 031506 136 RVLQDQS-----SLRLIIIEVGIILL 156 (158)
Q Consensus 136 d~iy~~~-----~~~~ll~tl~~ll~ 156 (158)
|+.-... ..+++.+.++..|.
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~ 181 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALK 181 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcC
Confidence 5433311 13555555555543
No 221
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.84 E-value=0.0016 Score=51.65 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecCCCC
Q 031506 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRVLQD 140 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~iy~ 140 (158)
-..++|+|||.|.+...+...+. +++.+|.+-. |++.++. ++-+++.......| ..+|+|| +-.+++
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~--M~~s~~~-~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYD--MIKSCRD-AQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchH--HHHHhhc-cCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 34699999999999998888877 8999999976 8877653 22244443333332 2899999 999999
Q ss_pred CccHHHHHHHHHHHhcC
Q 031506 141 QSSLRLIIIEVGIILLS 157 (158)
Q Consensus 141 ~~~~~~ll~tl~~ll~~ 157 (158)
..+++.....++..|++
T Consensus 150 ~NdLPg~m~~ck~~lKP 166 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKP 166 (325)
T ss_pred hccCchHHHHHHHhcCC
Confidence 98888877777766653
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.80 E-value=0.0097 Score=46.16 Aligned_cols=81 Identities=10% Similarity=0.012 Sum_probs=43.3
Q ss_pred CCCCCeEEEeccCCCHHHHHHh-hcCC-EEEEEecCChHHHHHHHHHH-------HHHcCCc---ceEEEcCC-------
Q 031506 68 RFSGANVVELGAGTSLPGLVAA-KVGS-NVTLTDDSNRIEVLKNMRRV-------CEMNKLN---CRLLMTSL------- 128 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a-~~g~-~v~~tD~~~~~~~l~~~~~n-------~~~n~~~---~~~~~~d~------- 128 (158)
..++...+|||||.|.+-+.+| ..+. +.+++++.+. ..+.++.+ .+..+.. +.+...|.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~--~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE--LHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH--HHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH--HHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 3457789999999999888555 4555 6999999974 33333332 2233332 23333332
Q ss_pred ----CCcEEE-ecCCCCCccHHHHHHH
Q 031506 129 ----PPSHIC-SRVLQDQSSLRLIIIE 150 (158)
Q Consensus 129 ----~fD~Ii-~d~iy~~~~~~~ll~t 150 (158)
.-|+|+ ++..|.++....|.+.
T Consensus 118 ~~~s~AdvVf~Nn~~F~~~l~~~L~~~ 144 (205)
T PF08123_consen 118 DIWSDADVVFVNNTCFDPDLNLALAEL 144 (205)
T ss_dssp HHGHC-SEEEE--TTT-HHHHHHHHHH
T ss_pred hhhcCCCEEEEeccccCHHHHHHHHHH
Confidence 579999 8888877766666433
No 223
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.62 E-value=0.004 Score=48.98 Aligned_cols=88 Identities=14% Similarity=0.030 Sum_probs=62.4
Q ss_pred cchHHHHHHHHHhcccC-CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEE--EcCC
Q 031506 52 WPCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL--MTSL 128 (158)
Q Consensus 52 W~~~~~la~~l~~~~~~-~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~--~~d~ 128 (158)
|-+....+.++...-.. .....|+|.-||.|.-.+..|..|..|+++|+++. =+..+++|++..|+..+++ ..|+
T Consensus 75 svTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPi--kIa~AkhNaeiYGI~~rItFI~GD~ 152 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPV--KIACARHNAEVYGVPDRITFICGDF 152 (263)
T ss_pred EeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHH--HHHHHhccceeecCCceeEEEechH
Confidence 33334444444432211 15567999999999999999999999999999964 7889999999999876554 3333
Q ss_pred ------------CCcEEE-ecCCCCC
Q 031506 129 ------------PPSHIC-SRVLQDQ 141 (158)
Q Consensus 129 ------------~fD~Ii-~d~iy~~ 141 (158)
.+|+++ +.|--.+
T Consensus 153 ld~~~~lq~~K~~~~~vf~sppwggp 178 (263)
T KOG2730|consen 153 LDLASKLKADKIKYDCVFLSPPWGGP 178 (263)
T ss_pred HHHHHHHhhhhheeeeeecCCCCCCc
Confidence 355888 7765433
No 224
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.60 E-value=0.0069 Score=48.08 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=51.6
Q ss_pred CCCeEEEeccCCC-HHHH-HHhhcCCEEEEEecCChHHHHHHHHHHHHHc-CCc--ceE-------------EEcCCCCc
Q 031506 70 SGANVVELGAGTS-LPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLN--CRL-------------LMTSLPPS 131 (158)
Q Consensus 70 ~~~~vLELG~GtG-l~~i-~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n-~~~--~~~-------------~~~d~~fD 131 (158)
++.++||+|.|.- +.-+ -.-.+|...+++|+++. .++.++.++..| ++. ++. ++.+..||
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~--sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQ--SLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHH--HHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 4557899998843 2222 34456789999999976 899999999998 443 111 12244899
Q ss_pred EEEecCCCCCccHH
Q 031506 132 HICSRVLQDQSSLR 145 (158)
Q Consensus 132 ~Ii~d~iy~~~~~~ 145 (158)
..+++|+||....+
T Consensus 156 ~tlCNPPFh~s~~d 169 (292)
T COG3129 156 ATLCNPPFHDSAAD 169 (292)
T ss_pred eEecCCCcchhHHH
Confidence 99988888876533
No 225
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.57 E-value=0.0082 Score=48.80 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=63.6
Q ss_pred cCCCCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEcCC----------CCcEE
Q 031506 67 YRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMTSL----------PPSHI 133 (158)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~d~----------~fD~I 133 (158)
.++.|+.|+=+| ---+.|++++.-|. +|.++|+++. .++.+.+-++..+.+ +.+..+|. +||++
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDER--li~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDER--LIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHH--HHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCee
Confidence 356788999999 66788887776654 9999999986 888888888877765 55555543 89999
Q ss_pred EecCCCCCccHHHHHHH
Q 031506 134 CSRVLQDQSSLRLIIIE 150 (158)
Q Consensus 134 i~d~iy~~~~~~~ll~t 150 (158)
+.||+|-...+..++..
T Consensus 226 iTDPpeTi~alk~FlgR 242 (354)
T COG1568 226 ITDPPETIKALKLFLGR 242 (354)
T ss_pred ecCchhhHHHHHHHHhc
Confidence 99999988877776643
No 226
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.55 E-value=0.014 Score=46.42 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=56.1
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHc-----CCcceEEEcC---------C-CCcE
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRLLMTS---------L-PPSH 132 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~~d---------~-~fD~ 132 (158)
+.++||=||-|.|.....+.+.. .+|+++|+++. +++.+++-.... .-++++...| . +||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~--Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPE--VVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HH--HHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChH--HHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 57899999999999998888776 49999999965 889888865542 2345555443 2 7999
Q ss_pred EEecCCC---CCcc--HHHHHHHHHHHhc
Q 031506 133 ICSRVLQ---DQSS--LRLIIIEVGIILL 156 (158)
Q Consensus 133 Ii~d~iy---~~~~--~~~ll~tl~~ll~ 156 (158)
|+.|+.- .... ..+.++.++..|.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~ 182 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLK 182 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcC
Confidence 9954442 2221 3455666655553
No 227
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.53 E-value=0.0074 Score=45.15 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=39.0
Q ss_pred chHHHHHHHHHhcc-cCC-CCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCCh
Q 031506 53 PCSVILAEYVWQQR-YRF-SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR 103 (158)
Q Consensus 53 ~~~~~la~~l~~~~-~~~-~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~ 103 (158)
.++..|.+-..+.. ... .+.+||||||++|..+-.+.+++ ..|+++|+.+.
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 35667777666655 222 45899999999999999999888 59999999973
No 228
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.42 E-value=0.012 Score=48.02 Aligned_cols=86 Identities=17% Similarity=0.088 Sum_probs=56.0
Q ss_pred CCeEEEeccCCC----HHHHHHhhc------CCEEEEEecCChHHHHHHHHHHHH----HcCC-----------------
Q 031506 71 GANVVELGAGTS----LPGLVAAKV------GSNVTLTDDSNRIEVLKNMRRVCE----MNKL----------------- 119 (158)
Q Consensus 71 ~~~vLELG~GtG----l~~i~~a~~------g~~v~~tD~~~~~~~l~~~~~n~~----~n~~----------------- 119 (158)
.-||.-.||.|| .+++++... ..+|++||+++. +++.+++.+- ..++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~--aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~ 193 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTE--VLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHE 193 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHH--HHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCC
Confidence 369999999999 455555442 248999999975 8988877530 0000
Q ss_pred ---c--------ceEEEcC---------CCCcEEE-ecCCCCC--ccHHHHHHHHHHHhcCC
Q 031506 120 ---N--------CRLLMTS---------LPPSHIC-SRVLQDQ--SSLRLIIIEVGIILLSS 158 (158)
Q Consensus 120 ---~--------~~~~~~d---------~~fD~Ii-~d~iy~~--~~~~~ll~tl~~ll~~~ 158 (158)
. +.+...| .+||+|+ -+++.|. +....+++.+...|.++
T Consensus 194 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 194 GLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred ceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 0 1111111 2799999 6776443 55788888888887653
No 229
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.37 E-value=0.016 Score=45.75 Aligned_cols=83 Identities=8% Similarity=0.028 Sum_probs=58.8
Q ss_pred CCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEc-----------C---C
Q 031506 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMT-----------S---L 128 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~-----------d---~ 128 (158)
.++.+++||||.=||.-++..|.. +.+|++.|+++. ..+...+-.+..+.. +++... + .
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~--~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDAD--AYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChH--HHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCC
Confidence 457889999999999888876654 569999999975 777777666666654 333222 1 2
Q ss_pred CCcEEE--ecCCCCCccHHHHHHHHH
Q 031506 129 PPSHIC--SRVLQDQSSLRLIIIEVG 152 (158)
Q Consensus 129 ~fD~Ii--~d~iy~~~~~~~ll~tl~ 152 (158)
.||+++ +|=-.|...++.+++.++
T Consensus 149 tfDfaFvDadK~nY~~y~e~~l~Llr 174 (237)
T KOG1663|consen 149 TFDFAFVDADKDNYSNYYERLLRLLR 174 (237)
T ss_pred ceeEEEEccchHHHHHHHHHHHhhcc
Confidence 899999 665555566676666543
No 230
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.036 Score=46.38 Aligned_cols=69 Identities=17% Similarity=0.055 Sum_probs=51.5
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcC----CEEEEEecCChHHHHHHHHHHHHHcCCcc-eEEEcCC-----------CCcE
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RLLMTSL-----------PPSH 132 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g----~~v~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~~d~-----------~fD~ 132 (158)
.++.+|||+.|+.|.=+..++.+. ..|++.|.++. =++.+++|++..++.. .+...|. +||.
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~--Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPK--RLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHH--HHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 467899999999997777655543 45799999975 7899999999988764 3333221 4999
Q ss_pred EEecCCC
Q 031506 133 ICSRVLQ 139 (158)
Q Consensus 133 Ii~d~iy 139 (158)
|+.|++.
T Consensus 233 iLlDaPC 239 (355)
T COG0144 233 ILLDAPC 239 (355)
T ss_pred EEECCCC
Confidence 9966654
No 231
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.25 E-value=0.046 Score=44.31 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=64.3
Q ss_pred CceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHcCCcc-e
Q 031506 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-R 122 (158)
Q Consensus 47 ~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~-~ 122 (158)
..+.+++.+-.++.+++. ..++.+|||++|+.|.=+..++.. + ..|++.|++.. -+..++.|++..+... .
T Consensus 65 G~~~vQd~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~--Rl~~l~~~~~r~g~~~v~ 139 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPK--RLKRLKENLKRLGVFNVI 139 (283)
T ss_dssp TSEEEHHHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHH--HHHHHHHHHHHTT-SSEE
T ss_pred CcEEeccccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccCHH--HHHHHHHHHHhcCCceEE
Confidence 456788777777766654 236778999999999888766654 3 39999999975 7889999999888753 3
Q ss_pred EEEcC----------CCCcEEEecCCCC
Q 031506 123 LLMTS----------LPPSHICSRVLQD 140 (158)
Q Consensus 123 ~~~~d----------~~fD~Ii~d~iy~ 140 (158)
+...| ..||.|+.|++..
T Consensus 140 ~~~~D~~~~~~~~~~~~fd~VlvDaPCS 167 (283)
T PF01189_consen 140 VINADARKLDPKKPESKFDRVLVDAPCS 167 (283)
T ss_dssp EEESHHHHHHHHHHTTTEEEEEEECSCC
T ss_pred EEeeccccccccccccccchhhcCCCcc
Confidence 33232 1599999666543
No 232
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.24 E-value=0.013 Score=47.16 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=46.0
Q ss_pred eEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc---C--CCCcEEE-ecCC
Q 031506 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---S--LPPSHIC-SRVL 138 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---d--~~fD~Ii-~d~i 138 (158)
+++||-||.|.++..+.+.|. .|.++|.++. +++..++|....-...++... + ..+|+|+ +-|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~--a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKS--AAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHH--HHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCC
Confidence 699999999999998888888 5788999975 888888886432122222222 2 2799999 5444
No 233
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.15 E-value=0.0075 Score=51.49 Aligned_cols=85 Identities=21% Similarity=0.213 Sum_probs=60.1
Q ss_pred ceEEEEeccCC---CCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHH
Q 031506 34 SFSIAIIENMK---EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNM 110 (158)
Q Consensus 34 ~~~~~i~~~~~---~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~ 110 (158)
.+....+|... ..+|-.-|.+- +..+.-.-..-...|..|.|+-||.|-+++-+++.++.|++-|+++ ++++.+
T Consensus 211 n~vtevre~~~~Fk~DfskVYWnsR-L~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNp--esik~L 287 (495)
T KOG2078|consen 211 NLVTEVREGGERFKFDFSKVYWNSR-LSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNP--ESIKWL 287 (495)
T ss_pred ceEEEEecCCeeEEEecceEEeecc-chhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCH--HHHHHH
Confidence 34445554321 23555568843 3332221112334677899999999999999999999999999996 599999
Q ss_pred HHHHHHcCCcc
Q 031506 111 RRVCEMNKLNC 121 (158)
Q Consensus 111 ~~n~~~n~~~~ 121 (158)
+.|++.|.+..
T Consensus 288 k~ni~lNkv~~ 298 (495)
T KOG2078|consen 288 KANIKLNKVDP 298 (495)
T ss_pred HHhccccccch
Confidence 99999998754
No 234
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.98 E-value=0.17 Score=41.47 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=58.4
Q ss_pred CCCeEEEeccCCCHHHH-HHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEcCC-----------CCcE
Q 031506 70 SGANVVELGAGTSLPGL-VAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMTSL-----------PPSH 132 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i-~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~d~-----------~fD~ 132 (158)
..-+|||+.||.|.-=+ ++.+.. .+|.+.|+++. .++..++-++.+++.. ++...|. ++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~--Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPI--NVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHH--HHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 55699999999997766 333332 38999999975 8999999999988863 5554432 6899
Q ss_pred EE-ecCCCCCcc---HHHHHHHHHHHh
Q 031506 133 IC-SRVLQDQSS---LRLIIIEVGIIL 155 (158)
Q Consensus 133 Ii-~d~iy~~~~---~~~ll~tl~~ll 155 (158)
++ +-.+-..++ +...++-++..+
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al 239 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARAL 239 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHh
Confidence 99 877655555 333444444443
No 235
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.86 E-value=0.068 Score=46.79 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=55.7
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc----------CCCCcEEE--
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT----------SLPPSHIC-- 134 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~----------d~~fD~Ii-- 134 (158)
.+..+||+|||.|-..+.+|+... .++++|+... .+..+.+.+...++. +++... +..+|-|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~--~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLN--GVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHH--HHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 456899999999999998888754 8999999974 555555555555442 333322 22577666
Q ss_pred -ecCCCCCc------cHHHHHHHHHHHhcC
Q 031506 135 -SRVLQDQS------SLRLIIIEVGIILLS 157 (158)
Q Consensus 135 -~d~iy~~~------~~~~ll~tl~~ll~~ 157 (158)
.||=.-.. ..+++++.++.+|.+
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~ 454 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKD 454 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCC
Confidence 34432221 146777777777764
No 236
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.79 E-value=0.12 Score=42.06 Aligned_cols=80 Identities=10% Similarity=0.022 Sum_probs=55.7
Q ss_pred CCCCCeEEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEc----------CCCCcE
Q 031506 68 RFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMT----------SLPPSH 132 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~----------d~~fD~ 132 (158)
..+|.+|||-|.|+|.++..+++.- .+++-.|+.+. -.+.+++-.+..++.. .+..- +..+|.
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~--Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHET--RAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHH--HHHHHHHHHHHhCCCcceEEEEeecccCCccccccccce
Confidence 4478899999999999999888864 28999999764 5556666666666542 22211 237888
Q ss_pred EEecCCCCCccHHHHHH
Q 031506 133 ICSRVLQDQSSLRLIII 149 (158)
Q Consensus 133 Ii~d~iy~~~~~~~ll~ 149 (158)
|+.|.+-....++.+.+
T Consensus 181 VFLDlPaPw~AiPha~~ 197 (314)
T KOG2915|consen 181 VFLDLPAPWEAIPHAAK 197 (314)
T ss_pred EEEcCCChhhhhhhhHH
Confidence 88777766555555444
No 237
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.65 E-value=0.11 Score=41.97 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=54.6
Q ss_pred CCCeEEEeccCCC----HHHHHHhhcC-------CEEEEEecCChHHHHHHHHHHHHH-----cCCc-------------
Q 031506 70 SGANVVELGAGTS----LPGLVAAKVG-------SNVTLTDDSNRIEVLKNMRRVCEM-----NKLN------------- 120 (158)
Q Consensus 70 ~~~~vLELG~GtG----l~~i~~a~~g-------~~v~~tD~~~~~~~l~~~~~n~~~-----n~~~------------- 120 (158)
+.-+|.-.||+|| .+++++...+ .+|+|||++.. +++.++.-+=- .++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~--~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~ 173 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLS--VLEKARAGIYPSRELLRGLPPELLRRYFERGGD 173 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHH--HHHHHhcCCCChhHhhccCCHHHHhhhEeecCC
Confidence 4569999999999 5555555432 38999999976 88877643210 1111
Q ss_pred ------------ceEEEcCC--------CCcEEE-ecCC-CC-CccHHHHHHHHHHHhcC
Q 031506 121 ------------CRLLMTSL--------PPSHIC-SRVL-QD-QSSLRLIIIEVGIILLS 157 (158)
Q Consensus 121 ------------~~~~~~d~--------~fD~Ii-~d~i-y~-~~~~~~ll~tl~~ll~~ 157 (158)
+++...|+ +||+|+ =|++ |. .+.-..++..++..|.+
T Consensus 174 ~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~ 233 (268)
T COG1352 174 GSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP 233 (268)
T ss_pred CcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC
Confidence 01111121 699999 5554 54 45567788888887765
No 238
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.64 E-value=0.039 Score=46.65 Aligned_cols=79 Identities=20% Similarity=0.146 Sum_probs=52.6
Q ss_pred CCCeEEEeccCCCHHHHHHhhc--C-CEEEEEecCChHHHHHHHHHHHHHcCCcc---eEEEcC---------CCCcEEE
Q 031506 70 SGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNC---RLLMTS---------LPPSHIC 134 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~--g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~~---~~~~~d---------~~fD~Ii 134 (158)
.+.++||.=||||+=|+-.++. + .+|++-|+++. +++.+++|++.|++.. .+...| ..||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~--a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPE--AVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HH--HHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHH--HHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE
Confidence 3458999999999999977776 3 38999999965 9999999999999876 333322 2799988
Q ss_pred ecCCCCC-ccHHHHHHH
Q 031506 135 SRVLQDQ-SSLRLIIIE 150 (158)
Q Consensus 135 ~d~iy~~-~~~~~ll~t 150 (158)
-||.-.+ +-++..++.
T Consensus 127 lDPfGSp~pfldsA~~~ 143 (377)
T PF02005_consen 127 LDPFGSPAPFLDSALQA 143 (377)
T ss_dssp E--SS--HHHHHHHHHH
T ss_pred eCCCCCccHhHHHHHHH
Confidence 8887665 334444443
No 239
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.51 E-value=0.044 Score=41.56 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=42.7
Q ss_pred EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 031506 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~ 112 (158)
+.-+-...|.+.+.+.. ..++..|||--||+|..++++.++|.+.+++|+++. .++.+++
T Consensus 172 h~~~kP~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~--y~~~a~~ 231 (231)
T PF01555_consen 172 HPTQKPVELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEE--YCEIAKK 231 (231)
T ss_dssp -TT-S-HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHH--HHHHHHH
T ss_pred eeecCCHHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHH--HHHHhcC
Confidence 44455677777776543 236789999999999999999999999999999964 7766653
No 240
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.46 E-value=0.049 Score=45.17 Aligned_cols=75 Identities=25% Similarity=0.339 Sum_probs=55.3
Q ss_pred ceEEEEeccCCCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHH
Q 031506 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (158)
Q Consensus 34 ~~~~~i~~~~~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~ 110 (158)
.+-.++.++.+.+.|..+=| +.++-..++...-..+.+||=+||| .|++++++|+ .|+ +|+++|+.+. -++.+
T Consensus 135 dfc~KLPd~vs~eeGAl~eP--LsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~--Rle~A 210 (354)
T KOG0024|consen 135 DFCYKLPDNVSFEEGALIEP--LSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVAN--RLELA 210 (354)
T ss_pred HheeeCCCCCchhhcccccc--hhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHH--HHHHH
Confidence 46677877776666666555 4444444554455578899999999 8999998877 476 9999999975 67777
Q ss_pred HH
Q 031506 111 RR 112 (158)
Q Consensus 111 ~~ 112 (158)
++
T Consensus 211 k~ 212 (354)
T KOG0024|consen 211 KK 212 (354)
T ss_pred HH
Confidence 66
No 241
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.45 E-value=0.11 Score=43.27 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=55.8
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcC-------CcceEEEcC--------------
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNK-------LNCRLLMTS-------------- 127 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~-------~~~~~~~~d-------------- 127 (158)
++..+++||||-|.--+-.-+.|. +++++|+.+. .++.+++.-..-. ..+.+...|
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAev--SI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEV--SINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhc--cHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 456799999999988888888877 8999999986 7777766543211 112233222
Q ss_pred CCCcEEE-ecCCCC-C---ccHHHHHHHHHHHhcC
Q 031506 128 LPPSHIC-SRVLQD-Q---SSLRLIIIEVGIILLS 157 (158)
Q Consensus 128 ~~fD~Ii-~d~iy~-~---~~~~~ll~tl~~ll~~ 157 (158)
.+||+|- -=+++| - +...-++..++..|.+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp 229 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP 229 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC
Confidence 2499998 445544 2 3345556666665554
No 242
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.42 E-value=0.22 Score=33.30 Aligned_cols=79 Identities=22% Similarity=0.192 Sum_probs=45.8
Q ss_pred EEEeccCCCHHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc-------C----CCCcEEE-ecC
Q 031506 74 VVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT-------S----LPPSHIC-SRV 137 (158)
Q Consensus 74 vLELG~GtGl~~i~~a~~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~-------d----~~fD~Ii-~d~ 137 (158)
++|+|||+|... .+++.. ..++++|.++. ++...+.+....... +.+... + ..||++. ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPE--MLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHH--HHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999876 333332 47888899864 676644433222111 122111 1 1588887 555
Q ss_pred CCCCccHHHHHHHHHHHhc
Q 031506 138 LQDQSSLRLIIIEVGIILL 156 (158)
Q Consensus 138 iy~~~~~~~ll~tl~~ll~ 156 (158)
.++.. ...++..+...+.
T Consensus 129 ~~~~~-~~~~~~~~~~~l~ 146 (257)
T COG0500 129 LHLLP-PAKALRELLRVLK 146 (257)
T ss_pred hhcCC-HHHHHHHHHHhcC
Confidence 44444 5666666666554
No 243
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.38 E-value=0.04 Score=40.65 Aligned_cols=61 Identities=10% Similarity=-0.080 Sum_probs=45.1
Q ss_pred EEEecCChHHHHHHHHHHHHHcC----CcceEEEcC--------CCCcEEE-ecCCCCCccHHHHHHHHHHHhcCC
Q 031506 96 TLTDDSNRIEVLKNMRRVCEMNK----LNCRLLMTS--------LPPSHIC-SRVLQDQSSLRLIIIEVGIILLSS 158 (158)
Q Consensus 96 ~~tD~~~~~~~l~~~~~n~~~n~----~~~~~~~~d--------~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~~~ 158 (158)
+++|.++. |++.++++..... .++++...| ..||+|+ +.++.+.++....++.+..+|.++
T Consensus 1 ~GvD~S~~--ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSE--QLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHH--HHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 47899965 9999887765322 124444433 2799999 888888889999999999988764
No 244
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.32 E-value=0.042 Score=43.02 Aligned_cols=81 Identities=12% Similarity=0.079 Sum_probs=48.9
Q ss_pred CCCeEEEeccCCCHHHH-HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCc-ceEEEc--------CCCCcEEE-ecCC
Q 031506 70 SGANVVELGAGTSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRLLMT--------SLPPSHIC-SRVL 138 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i-~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~~--------d~~fD~Ii-~d~i 138 (158)
...+.||.|||-|.++- ++.+...+|-++|..+. .++.+++.+...... .++... ..+||+|+ -=|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~--Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEK--FLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HH--HHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHH--HHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 45689999999999998 56777779999999975 888888766542212 233322 23899999 5555
Q ss_pred CCCcc--HHHHHHHHH
Q 031506 139 QDQSS--LRLIIIEVG 152 (158)
Q Consensus 139 y~~~~--~~~ll~tl~ 152 (158)
-|..+ +-.+++..+
T Consensus 133 ghLTD~dlv~fL~RCk 148 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCK 148 (218)
T ss_dssp GGS-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH
Confidence 55444 333444433
No 245
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.06 Score=45.26 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=59.0
Q ss_pred CCeEEEeccCCCHHHHHHhh-cCC-EEEEEecCChHHHHHHHHHHHHHc-CCcceEEEcC---------CCCcEEEecCC
Q 031506 71 GANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMN-KLNCRLLMTS---------LPPSHICSRVL 138 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~~d---------~~fD~Ii~d~i 138 (158)
..+|+|-=+|||+=||-.+. .+. +|++-|+++. +++.+++|+..| +.+..+...| ..||+|=-||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~--Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPK--AVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHH--HHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCC
Confidence 67999999999999997665 455 8999999975 999999999999 4444443332 27998878887
Q ss_pred CCCc-cHHHHHHHHH
Q 031506 139 QDQS-SLRLIIIEVG 152 (158)
Q Consensus 139 y~~~-~~~~ll~tl~ 152 (158)
-.+. -++..++.+.
T Consensus 131 GSPaPFlDaA~~s~~ 145 (380)
T COG1867 131 GSPAPFLDAALRSVR 145 (380)
T ss_pred CCCchHHHHHHHHhh
Confidence 6543 3444444443
No 246
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.042 Score=40.91 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=38.6
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCC
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL 119 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~ 119 (158)
+..+.+|||+|-|.+-+.++++|. .-+++++++- .+..++-..-..+.
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpw--LVaysrl~a~R~g~ 120 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPW--LVAYSRLHAWRAGC 120 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHH--HHHHHHHHHHHHhc
Confidence 345799999999999999999995 8999999964 67777766655554
No 247
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.91 E-value=0.46 Score=38.47 Aligned_cols=35 Identities=26% Similarity=0.112 Sum_probs=31.7
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCCh
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~ 103 (158)
..+.+||==|||.|.++--+|++|..+.+.+.|-.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~ 89 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYF 89 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccceEEEEEchHH
Confidence 35579999999999999999999999999999964
No 248
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.86 E-value=0.18 Score=39.63 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=43.0
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcc
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~ 121 (158)
++.++.|+||--|.+.+.+-+.+. .+++.|+++. -++.+.+|+..+++..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~g--pl~~a~~~v~~~~l~~ 67 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPG--PLESAIRNVKKNNLSE 67 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccC--HHHHHHHHHHhcCCcc
Confidence 345699999999999998888764 8999999987 7899999999988753
No 249
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.70 E-value=0.15 Score=40.00 Aligned_cols=92 Identities=18% Similarity=0.081 Sum_probs=58.6
Q ss_pred chHHHHHHHHHhcccCCC----CCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEE--
Q 031506 53 PCSVILAEYVWQQRYRFS----GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLM-- 125 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~----~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~-- 125 (158)
+++..+.+|+.......+ ..++||+||=+.-..+ +..+. +|+.+|+++..+-+. ++++..
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~--s~~~~fdvt~IDLns~~~~I~-----------qqDFm~rp 96 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNAC--STSGWFDVTRIDLNSQHPGIL-----------QQDFMERP 96 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcc--cccCceeeEEeecCCCCCCce-----------eeccccCC
Confidence 689999999987543222 3599999997554332 23333 799999997411110 111111
Q ss_pred ----cCCCCcEEE-ecCCCCCccH---HHHHHHHHHHhcC
Q 031506 126 ----TSLPPSHIC-SRVLQDQSSL---RLIIIEVGIILLS 157 (158)
Q Consensus 126 ----~d~~fD~Ii-~d~iy~~~~~---~~ll~tl~~ll~~ 157 (158)
-+.+||+|. +-++.+.++. -++++....+|.+
T Consensus 97 lp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~ 136 (219)
T PF11968_consen 97 LPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKP 136 (219)
T ss_pred CCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 134899999 9999888764 4566666666543
No 250
>PRK11524 putative methyltransferase; Provisional
Probab=94.67 E-value=0.13 Score=41.48 Aligned_cols=57 Identities=19% Similarity=0.116 Sum_probs=45.0
Q ss_pred HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
..|.+.+.... ..+|..|||--||+|..++++.+.|.+.++.|+++. .++.+++.+.
T Consensus 195 ~~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~--Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSE--YIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHH--HHHHHHHHHH
Confidence 44555544322 247889999999999999999999999999999964 7787777764
No 251
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.60 E-value=0.16 Score=40.26 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=35.9
Q ss_pred CeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHH---HHHHHcC-C------cceEEEc---------CCCCcE
Q 031506 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR---RVCEMNK-L------NCRLLMT---------SLPPSH 132 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~---~n~~~n~-~------~~~~~~~---------d~~fD~ 132 (158)
.+|||.=||.|.=++++|..|++|++++-++. +...++ ++...+. . +..+... +..||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspv--ia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPV--IAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HH--HHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHH--HHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 38999999999999999999999999999974 322222 2222221 1 1233332 338999
Q ss_pred EEecCCCCCcc
Q 031506 133 ICSRVLQDQSS 143 (158)
Q Consensus 133 Ii~d~iy~~~~ 143 (158)
|..||+|....
T Consensus 155 VY~DPMFp~~~ 165 (234)
T PF04445_consen 155 VYFDPMFPERK 165 (234)
T ss_dssp EEE--S-----
T ss_pred EEECCCCCCcc
Confidence 99999998754
No 252
>PRK13699 putative methylase; Provisional
Probab=94.55 E-value=0.17 Score=39.65 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=44.4
Q ss_pred HHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
..|.+.+.+.. ..++..|||--||+|..++++.+.|.+.+++|+++. ..+.+.+.++.
T Consensus 150 ~~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~--y~~~~~~r~~~ 207 (227)
T PRK13699 150 VTSLQPLIESF-THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQ--YHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHH--HHHHHHHHHHH
Confidence 44555554422 236779999999999999999999999999999964 67766666654
No 253
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.52 E-value=0.073 Score=37.30 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=28.7
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCC
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~ 102 (158)
+....+|||||.|++--.+.+-|..=.+.|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 345799999999999999999999888888865
No 254
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.22 E-value=1 Score=35.50 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=56.2
Q ss_pred CCCceEecch-HHHHHHHHHhc---ccCCCCCeEEEeccCCCHHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHH-HH
Q 031506 45 EEYGLFVWPC-SVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVC-EM 116 (158)
Q Consensus 45 ~~~g~~vW~~-~~~la~~l~~~---~~~~~~~~vLELG~GtGl~~i~~a~~-g--~~v~~tD~~~~~~~l~~~~~n~-~~ 116 (158)
...++|+|+. -=.|+..+... ....++.+||=||+.+|..---++-- | ..|.+++.++. ....+-.-+ ++
T Consensus 44 ~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r--~~rdL~~la~~R 121 (229)
T PF01269_consen 44 KKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPR--SMRDLLNLAKKR 121 (229)
T ss_dssp --EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHH--HHHHHHHHHHHS
T ss_pred CccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecch--hHHHHHHHhccC
Confidence 3458899954 33456656553 23447889999999999776655542 3 38999999974 333222111 12
Q ss_pred cCCcceEEEc-------C---CCCcEEEecCCCCCccHHHHHHHHHHHhc
Q 031506 117 NKLNCRLLMT-------S---LPPSHICSRVLQDQSSLRLIIIEVGIILL 156 (158)
Q Consensus 117 n~~~~~~~~~-------d---~~fD~Ii~d~iy~~~~~~~ll~tl~~ll~ 156 (158)
.++ +.+..- . ...|+|++|+-. +...+-++......|+
T Consensus 122 ~NI-iPIl~DAr~P~~Y~~lv~~VDvI~~DVaQ-p~Qa~I~~~Na~~fLk 169 (229)
T PF01269_consen 122 PNI-IPILEDARHPEKYRMLVEMVDVIFQDVAQ-PDQARIAALNARHFLK 169 (229)
T ss_dssp TTE-EEEES-TTSGGGGTTTS--EEEEEEE-SS-TTHHHHHHHHHHHHEE
T ss_pred Cce-eeeeccCCChHHhhcccccccEEEecCCC-hHHHHHHHHHHHhhcc
Confidence 221 111111 0 178888888873 3444555555444443
No 255
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=94.19 E-value=0.14 Score=36.83 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=29.3
Q ss_pred HHHHHHHhcccCCCCCeEEEeccC-CCHHHHHHhhcCCEEEEEecCC
Q 031506 57 ILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGSNVTLTDDSN 102 (158)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~G-tGl~~i~~a~~g~~v~~tD~~~ 102 (158)
.+|+|+.+.. +..+++|+|-| ---++..+++.|..|++||+.+
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~ 46 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence 5788887633 33499999999 4566778888999999999997
No 256
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.15 E-value=0.21 Score=35.48 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=50.2
Q ss_pred HHHHHHhcccCCCCCeEEEeccCCC-HHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-CCcEEE-
Q 031506 58 LAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-PPSHIC- 134 (158)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtG-l~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-~fD~Ii- 134 (158)
+++|+.... ...+|+|+|.|-= -++-.++++|..|++||+++. ++. ..+++..-|. .+.+=+
T Consensus 4 ~a~~iAre~---~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---------~a~---~g~~~v~DDitnP~~~iY 68 (129)
T COG1255 4 VAEYIAREN---ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---------TAP---EGLRFVVDDITNPNISIY 68 (129)
T ss_pred HHHHHHHHh---cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---------cCc---ccceEEEccCCCccHHHh
Confidence 456665422 2238999999833 445577889999999999973 222 2244444444 344333
Q ss_pred --ecCCCCCccHHHHHHHHHH
Q 031506 135 --SRVLQDQSSLRLIIIEVGI 153 (158)
Q Consensus 135 --~d~iy~~~~~~~ll~tl~~ 153 (158)
+|.+|.....++|.+.+-.
T Consensus 69 ~~A~lIYSiRpppEl~~~ild 89 (129)
T COG1255 69 EGADLIYSIRPPPELQSAILD 89 (129)
T ss_pred hCccceeecCCCHHHHHHHHH
Confidence 6777777666666655543
No 257
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.99 E-value=0.039 Score=45.30 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=55.2
Q ss_pred eEecchHHHHHHH--H-Hhcc---cCCCCCeEEEeccCCCHHHH-HHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCc
Q 031506 49 LFVWPCSVILAEY--V-WQQR---YRFSGANVVELGAGTSLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (158)
Q Consensus 49 ~~vW~~~~~la~~--l-~~~~---~~~~~~~vLELG~GtGl~~i-~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (158)
.+.|+....|..+ + ++.+ ....+..|+||=||-|.+.+ .+-++|+ .|++.|.++ ..++.+++|++.|+..
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp--~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNP--WSVEALRRNAEANNVM 244 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCH--HHHHHHHHHHHhcchH
Confidence 4789998888765 1 1111 12245789999999999999 7788888 899999996 4999999999999764
No 258
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.87 E-value=0.24 Score=42.05 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=37.5
Q ss_pred CCCeEEEeccCCCHHHHHHhhcC-C-EEEEEecCChHHHHHHHHHHHHH
Q 031506 70 SGANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g-~-~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
.-++||=||.|-|+....+.|.- . +|+.+|+++. |++.+++|.-.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~--miela~~~~vl 335 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPR--MIELASHATVL 335 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHH--HHHHhhhhhHh
Confidence 34689999999999999888764 3 9999999965 99999977543
No 259
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=93.75 E-value=0.48 Score=37.47 Aligned_cols=87 Identities=20% Similarity=0.142 Sum_probs=58.3
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc----------CCCCcEEEecC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT----------SLPPSHICSRV 137 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~----------d~~fD~Ii~d~ 137 (158)
.+|.|||++|=|.|++.-.+..+.. +=+.++..+ ++++.++.+.-...-++-+... |..||=|+-|.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp--~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP--DVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH--HHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec
Confidence 4788999999999999987766544 556677775 4999998877655434333222 33799999776
Q ss_pred C-CCCccHHHHHHHHHHHhcC
Q 031506 138 L-QDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 138 i-y~~~~~~~ll~tl~~ll~~ 157 (158)
. -+-+++..+.+.+-.||++
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP 198 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKP 198 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCC
Confidence 5 3334455555655555553
No 260
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.72 E-value=0.21 Score=41.31 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=51.0
Q ss_pred CCCeEEEeccCCCHHHH-HHh---h--cCCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEc--C-------------
Q 031506 70 SGANVVELGAGTSLPGL-VAA---K--VGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMT--S------------- 127 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i-~~a---~--~g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~--d------------- 127 (158)
++..++|||||+|.=.. ++. + .....+.+|+|.. +++.+..++..... .+.+.+. |
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~--~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRS--ELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHH--HHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 45589999999996533 221 2 2357999999965 89988888873222 2333211 1
Q ss_pred -CCCcEEE--ecCCCC--CccHHHHHHHHHH-Hh
Q 031506 128 -LPPSHIC--SRVLQD--QSSLRLIIIEVGI-IL 155 (158)
Q Consensus 128 -~~fD~Ii--~d~iy~--~~~~~~ll~tl~~-ll 155 (158)
....+|+ -..|.+ ++....+++.++. .+
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l 187 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATAL 187 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhC
Confidence 1356776 345533 3445577777766 44
No 261
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=93.68 E-value=0.11 Score=40.02 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=28.8
Q ss_pred CCCeEEEeccCCC----HHHHHHhh-----cC--CEEEEEecCChHHHHHHHHHH
Q 031506 70 SGANVVELGAGTS----LPGLVAAK-----VG--SNVTLTDDSNRIEVLKNMRRV 113 (158)
Q Consensus 70 ~~~~vLELG~GtG----l~~i~~a~-----~g--~~v~~tD~~~~~~~l~~~~~n 113 (158)
+.-+|.-.||+|| .+++++.. .+ .+|++||+++. +++.+++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~--~L~~Ar~G 83 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPS--ALEKARAG 83 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HH--HHHHHHHT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHH--HHHHHHhC
Confidence 4568999999999 45555554 12 38999999975 88887764
No 262
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.03 E-value=0.27 Score=38.24 Aligned_cols=50 Identities=26% Similarity=0.108 Sum_probs=38.7
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCC
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSN 102 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~ 102 (158)
.++..|.+-..++....++.+|+||||-.|.-+-.++++.. .|+++|+.+
T Consensus 28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 36666777666664444678999999999999998887643 499999997
No 263
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.03 E-value=0.42 Score=38.22 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=39.7
Q ss_pred CCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS 127 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d 127 (158)
..+|+|||||.==+++..... ++.+++.|++.. +++.+.+=+...+...++...|
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~--~ve~l~~~l~~l~~~~~~~v~D 162 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQ--LVEFLNAFLAVLGVPHDARVRD 162 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHH--HHHHHHHHHHHTT-CEEEEEE-
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHH--HHHHHHHHHHhhCCCcceeEee
Confidence 579999999998888855443 469999999975 9999888888777666655444
No 264
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.94 E-value=1 Score=37.11 Aligned_cols=59 Identities=7% Similarity=-0.085 Sum_probs=43.1
Q ss_pred HHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcC
Q 031506 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (158)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~ 118 (158)
|.+-+.......++..++|.=+|.|.-+..+++. ..+|++.|.++. +++.++++++..+
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~--Al~~ak~~L~~~~ 68 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQ--AIAFAKERLSDFE 68 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHH--HHHHHHHHHhhcC
Confidence 3343443333345678999999999999977664 259999999964 9999998887543
No 265
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.75 E-value=0.73 Score=37.78 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=49.0
Q ss_pred cCCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC---------------
Q 031506 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL--------------- 128 (158)
Q Consensus 67 ~~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~--------------- 128 (158)
.+++++.||==|+|.|+ +++.+|++|++++..|++.. ..+...++++.+| .+..+..|.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~--~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ--GNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc--chHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHH
Confidence 46688999999999994 55567899999999999985 4444444444444 454444432
Q ss_pred ---CCcEEE--ecCCCC
Q 031506 129 ---PPSHIC--SRVLQD 140 (158)
Q Consensus 129 ---~fD~Ii--~d~iy~ 140 (158)
..|+++ +-+.+.
T Consensus 111 e~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVTG 127 (300)
T ss_pred hcCCceEEEeccccccC
Confidence 788888 555443
No 266
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=0.54 Score=39.57 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=38.5
Q ss_pred HHHHHHHHHhccc---CCCCCeEEEeccCCCHHHHHHhh-c---------CCEEEEEecCChHHHHHHHHHHHH
Q 031506 55 SVILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAK-V---------GSNVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 55 ~~~la~~l~~~~~---~~~~~~vLELG~GtGl~~i~~a~-~---------g~~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
+..++.|+.+... ......++|+|+|+|.+..-+.+ . ..++..++.|+. ..+.=+.+++
T Consensus 59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~--L~~~Qk~~L~ 130 (370)
T COG1565 59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE--LRARQKETLK 130 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH--HHHHHHHHHh
Confidence 5667777766432 22345899999999998874332 1 358999999974 4443344444
No 267
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.78 E-value=0.78 Score=40.07 Aligned_cols=69 Identities=7% Similarity=-0.053 Sum_probs=50.3
Q ss_pred CCCeEEEeccCCCHHHHHHhhc----C--CEEEEEecCChHHHHHHHHHHHHHcCCcc--eEEEc-------------CC
Q 031506 70 SGANVVELGAGTSLPGLVAAKV----G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RLLMT-------------SL 128 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~----g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~--~~~~~-------------d~ 128 (158)
...+|.|-.||||.+-+.+++. . ..+.+.+.++. ....++.|.-.+++.. ..... ..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~--t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~ 263 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDT--TYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKG 263 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHH--HHHHHHHHHHHhCCCccccccccccccCCcccccCCcc
Confidence 4458999999999777655432 1 36889998864 8999999999988763 21111 12
Q ss_pred CCcEEEecCCCC
Q 031506 129 PPSHICSRVLQD 140 (158)
Q Consensus 129 ~fD~Ii~d~iy~ 140 (158)
+||+|+++|+|.
T Consensus 264 ~~D~viaNPPf~ 275 (489)
T COG0286 264 KFDFVIANPPFS 275 (489)
T ss_pred ceeEEEeCCCCC
Confidence 699999999887
No 268
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.58 E-value=0.37 Score=38.61 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=35.3
Q ss_pred eEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHH
Q 031506 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
+++||-||.|.+++.+.+.|. .|.++|+++. +.+.-+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~--a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPD--ACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHH--HHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHH--HHHhhhhccc
Confidence 689999999999999999997 7999999975 7888888876
No 269
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=91.52 E-value=0.22 Score=41.41 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=45.0
Q ss_pred EEEeccCCCHH-HHHHh-hcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-----------------CCCCcEEE
Q 031506 74 VVELGAGTSLP-GLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-----------------SLPPSHIC 134 (158)
Q Consensus 74 vLELG~GtGl~-~i~~a-~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-----------------d~~fD~Ii 134 (158)
-+|+|.|+-.+ .++-+ +.+....+||+++. .+..+.+|+..|++.-..... +..||++.
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~--s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcM 183 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDM--SFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCM 183 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeecccc--ccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEe
Confidence 47887774322 22222 33558999999986 788999999999875322111 12599999
Q ss_pred ecCCCCCccH
Q 031506 135 SRVLQDQSSL 144 (158)
Q Consensus 135 ~d~iy~~~~~ 144 (158)
++|+|+....
T Consensus 184 cNPPFfe~~~ 193 (419)
T KOG2912|consen 184 CNPPFFENQL 193 (419)
T ss_pred cCCchhhchh
Confidence 7777776543
No 270
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=90.92 E-value=0.86 Score=35.95 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=31.6
Q ss_pred CCCeEEEeccCCCHHHHHHhhc-C---CEEEEEecCChHHHHHHHHHHHHH
Q 031506 70 SGANVVELGAGTSLPGLVAAKV-G---SNVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~-g---~~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
.+..+=|=.||.|.+--.+.-+ + ..|+++|+++. +++.+++|+.+
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~--aL~lA~kNL~L 99 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDED--ALELARKNLSL 99 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HH--HHHHHHHHHHC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHH--HHHHHHHhhhh
Confidence 4457899999999655443332 2 38999999975 99999999854
No 271
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.90 E-value=0.39 Score=39.44 Aligned_cols=63 Identities=13% Similarity=-0.047 Sum_probs=43.2
Q ss_pred EEEeccCCCHHHHHHhhcCCE-EEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---C-CCcEEE-ecCC
Q 031506 74 VVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---L-PPSHIC-SRVL 138 (158)
Q Consensus 74 vLELG~GtGl~~i~~a~~g~~-v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---~-~fD~Ii-~d~i 138 (158)
|+||-||.|.+++.+.+.|.+ +.+.|+++. +.+..+.|....-...++...+ . .+|+++ .-|+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~--a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKY--AQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHH--HHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCC
Confidence 689999999999999899986 567999965 7777777764211111222211 2 589999 6554
No 272
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=90.84 E-value=0.2 Score=40.24 Aligned_cols=44 Identities=18% Similarity=0.344 Sum_probs=28.2
Q ss_pred cCCCCCeEEEeccCCCHHHHHHhhc-CCEEEEEecCChHHHHHHHHH
Q 031506 67 YRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~i~~a~~-g~~v~~tD~~~~~~~l~~~~~ 112 (158)
...++.++||+|||.-+.-++.|.. ..+|+++|+.+. ..+.+++
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~--N~~el~k 97 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQ--NREELEK 97 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHH--HHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHh--hHHHHHH
Confidence 3557889999999987776655544 448999999974 4443333
No 273
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.67 E-value=0.42 Score=41.79 Aligned_cols=51 Identities=8% Similarity=-0.010 Sum_probs=36.0
Q ss_pred CCCceEecchHHHHHHHHHhcccC--C--CCCeEEEeccCCCHHHHHHhhcCCEE
Q 031506 45 EEYGLFVWPCSVILAEYVWQQRYR--F--SGANVVELGAGTSLPGLVAAKVGSNV 95 (158)
Q Consensus 45 ~~~g~~vW~~~~~la~~l~~~~~~--~--~~~~vLELG~GtGl~~i~~a~~g~~v 95 (158)
++.|.+...++..-.+.|.+-... . .-+.+||+|||+|.+|..+..++..+
T Consensus 88 Pgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t 142 (506)
T PF03141_consen 88 PGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTT 142 (506)
T ss_pred CCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceE
Confidence 566777677777777666654332 1 22468999999999999888887643
No 274
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.39 E-value=0.86 Score=36.00 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=27.8
Q ss_pred CCeEEEeccCCCHHHHHHhhc----------CCEEEEEecCChHHHHHHHHHHHH
Q 031506 71 GANVVELGAGTSLPGLVAAKV----------GSNVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~----------g~~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
..+|+|+|+|+|.++.-+.+. ..+++.++.++. +.+.-++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~--L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY--LRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC--CHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH--HHHHHHHHhh
Confidence 368999999999998843321 238999999986 4444444443
No 275
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=90.33 E-value=0.36 Score=37.73 Aligned_cols=47 Identities=21% Similarity=0.109 Sum_probs=31.8
Q ss_pred HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCCh
Q 031506 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~ 103 (158)
.|+.+|.+..+.....+++|+=||+|.+++.+.+.+..|++-|+++.
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~ 53 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPD 53 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHH
Confidence 35667766443336789999999999999988778889999999974
No 276
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.16 E-value=0.93 Score=38.64 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=28.7
Q ss_pred CCCeEEEeccCCCHHHHHHh-hcCCEEEEEecCCh
Q 031506 70 SGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNR 103 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a-~~g~~v~~tD~~~~ 103 (158)
.-..|+|+|+|-|.++.+++ +.|..|.++|-+..
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~ 187 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQR 187 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchH
Confidence 44689999999999999776 46779999999964
No 277
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.75 E-value=1.2 Score=37.91 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=39.8
Q ss_pred CeEEEeccC-CCHHHH-HHhhcC-CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----------CCcEEE-ec
Q 031506 72 ANVVELGAG-TSLPGL-VAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----------PPSHIC-SR 136 (158)
Q Consensus 72 ~~vLELG~G-tGl~~i-~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----------~fD~Ii-~d 136 (158)
++||=|||| .|.... .+|+.+ .+|++.|.+.. .+..+..+... +.+....|. .+|+|| +=
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~--~~~~i~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE--KCARIAELIGG---KVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH--HHHHHHhhccc---cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 478999996 444433 456667 69999999953 55555444322 344444432 679999 55
Q ss_pred CCCCC
Q 031506 137 VLQDQ 141 (158)
Q Consensus 137 ~iy~~ 141 (158)
|.|+.
T Consensus 77 p~~~~ 81 (389)
T COG1748 77 PPFVD 81 (389)
T ss_pred Cchhh
Confidence 54443
No 278
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=89.11 E-value=4.4 Score=32.89 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=42.4
Q ss_pred CeEEEeccC-CCHHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHH-HcCCc--ceEEEcC-------C-CCcEEE-e
Q 031506 72 ANVVELGAG-TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCE-MNKLN--CRLLMTS-------L-PPSHIC-S 135 (158)
Q Consensus 72 ~~vLELG~G-tGl~~i~~a~~---g~~v~~tD~~~~~~~l~~~~~n~~-~n~~~--~~~~~~d-------~-~fD~Ii-~ 135 (158)
++|+=+||| .-+.++.+++. +..|+..|+++. +++.+++-++ ..++. ..+...| . .||+|+ +
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~--A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPE--ANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHH--HHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHH--HHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 599999999 78888988764 457999999964 8888877666 22332 3333332 2 899999 6
Q ss_pred cCCC-CCccHHHHHHHHHHH
Q 031506 136 RVLQ-DQSSLRLIIIEVGII 154 (158)
Q Consensus 136 d~iy-~~~~~~~ll~tl~~l 154 (158)
--+. ..+.=..++..+...
T Consensus 200 alVg~~~e~K~~Il~~l~~~ 219 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKH 219 (276)
T ss_dssp TT-S----SHHHHHHHHHHH
T ss_pred hhcccccchHHHHHHHHHhh
Confidence 6655 344445555555543
No 279
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.85 E-value=2.8 Score=29.85 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=42.5
Q ss_pred cCCCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------CCcEEE-ec
Q 031506 67 YRFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------PPSHIC-SR 136 (158)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------~fD~Ii-~d 136 (158)
..++++++|=+|+| +|...+ .++..|+ +|+++..+.. -.+.+.+.. .+..+.+..++. .+|+|+ +-
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~--ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPE--RAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINAT 83 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHH--HHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHH--HHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEec
Confidence 35789999999998 343333 4566677 6999998853 333333333 222344554432 799999 65
Q ss_pred CCCC
Q 031506 137 VLQD 140 (158)
Q Consensus 137 ~iy~ 140 (158)
+.-.
T Consensus 84 ~~~~ 87 (135)
T PF01488_consen 84 PSGM 87 (135)
T ss_dssp STTS
T ss_pred CCCC
Confidence 5433
No 280
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.71 E-value=2.2 Score=36.69 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=43.3
Q ss_pred cCCCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEE---EcCCCCcEEE-ec
Q 031506 67 YRFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL---MTSLPPSHIC-SR 136 (158)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~---~~d~~fD~Ii-~d 136 (158)
..+.+++|+=+|+| +|+... .++++|.+|+++|..+. +......+.++..++.+..- .....+|+|+ +-
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 34567899999998 665433 55678999999997763 33444445566556543210 0123689998 54
No 281
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=87.86 E-value=1.3 Score=37.31 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=58.7
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHH--HcCCcceEE----Ec---CCCCcEEE-ecC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCE--MNKLNCRLL----MT---SLPPSHIC-SRV 137 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g-~~v~~tD~~~~~~~l~~~~~n~~--~n~~~~~~~----~~---d~~fD~Ii-~d~ 137 (158)
+++.+++++|||.|-+....+..+ +.+++.|+++. +....-..+.. .+.....+. .. |..||.+- .|.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~-e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAY-EAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHH-HHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 345589999999999998777654 69999999963 22111111111 111111111 11 45899999 999
Q ss_pred CCCCccHHHHHHHHHHHhcC
Q 031506 138 LQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 138 iy~~~~~~~ll~tl~~ll~~ 157 (158)
..|.++...+++.+...++.
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kp 207 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKP 207 (364)
T ss_pred cccCCcHHHHHHHHhcccCC
Confidence 99999999999998876543
No 282
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.60 E-value=0.62 Score=40.73 Aligned_cols=81 Identities=21% Similarity=0.129 Sum_probs=59.6
Q ss_pred CCCeEEEeccCCCHHHHHHhhc--CC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--------------CCCCcE
Q 031506 70 SGANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--------------SLPPSH 132 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~--g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--------------d~~fD~ 132 (158)
++.+|||-=|+||+-+|-.|+. |. .|++-|.++. .++.+++|++.|+....+... +..||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~--aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNEN--AVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHH--HHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 4568999999999999977774 22 8999999976 999999999999764332211 237999
Q ss_pred EEecCCCCCcc-HHHHHHHHH
Q 031506 133 ICSRVLQDQSS-LRLIIIEVG 152 (158)
Q Consensus 133 Ii~d~iy~~~~-~~~ll~tl~ 152 (158)
|=-||.-.... +++.++.++
T Consensus 187 IDLDPyGs~s~FLDsAvqav~ 207 (525)
T KOG1253|consen 187 IDLDPYGSPSPFLDSAVQAVR 207 (525)
T ss_pred EecCCCCCccHHHHHHHHHhh
Confidence 88888755433 455555554
No 283
>PRK08862 short chain dehydrogenase; Provisional
Probab=87.02 E-value=12 Score=28.75 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=33.4
Q ss_pred CCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcC
Q 031506 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (158)
Q Consensus 69 ~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~ 118 (158)
++++++|=.|++.|+ ++..+++.|++|++++.++. .++.+.+.+...+
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~--~l~~~~~~i~~~~ 53 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS--ALKDTYEQCSALT 53 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHHHHhcC
Confidence 467889999999886 33456778999999988764 5555444444433
No 284
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=86.48 E-value=1.9 Score=36.03 Aligned_cols=42 Identities=26% Similarity=0.260 Sum_probs=31.6
Q ss_pred CCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~ 111 (158)
..++++|+=.|+| .|..++.+|+ .|++|++.|.++. -++.++
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~--K~e~a~ 207 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE--KLELAK 207 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH--HHHHHH
Confidence 4468888888888 6677776666 8999999999975 444443
No 285
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.46 E-value=1.7 Score=34.86 Aligned_cols=43 Identities=23% Similarity=0.161 Sum_probs=31.0
Q ss_pred HHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC-------CEEEEEecCC
Q 031506 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSN 102 (158)
Q Consensus 60 ~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g-------~~v~~tD~~~ 102 (158)
..|.+.....++..++|+|||.|.++-.++..- ..++++|...
T Consensus 8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 344443333456689999999999999776643 4889999975
No 286
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=86.00 E-value=0.44 Score=32.14 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=15.3
Q ss_pred EEeccCCCHHHHHHhhc---C--CEEEEEecCChHHHHHHHHHHHHHcCCc--ceEEEcC----------CCCcEEEecC
Q 031506 75 VELGAGTSLPGLVAAKV---G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRLLMTS----------LPPSHICSRV 137 (158)
Q Consensus 75 LELG~GtGl~~i~~a~~---g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~~d----------~~fD~Ii~d~ 137 (158)
||+|+..|..++.+++. . .+++++|..+. .+..+++++..++. +++...+ .+||+|+-|-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~---~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG---DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS---------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc---ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 79999999888765542 2 27999999872 33344444433332 3333332 3899999665
Q ss_pred CC
Q 031506 138 LQ 139 (158)
Q Consensus 138 iy 139 (158)
-+
T Consensus 78 ~H 79 (106)
T PF13578_consen 78 DH 79 (106)
T ss_dssp --
T ss_pred CC
Confidence 43
No 287
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.45 E-value=1.4 Score=38.71 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=33.3
Q ss_pred CCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHHH
Q 031506 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~~ 112 (158)
.++.+|+=+||| .|+.++.+++ +|++|+++|.++. -++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~--rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE--VAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHH
Confidence 467899999999 8999986554 6899999999964 5665554
No 288
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.35 E-value=1 Score=38.11 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=50.2
Q ss_pred ccCCCCCeEEEeccCCCHHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHcCCc----ce-----EEEcCC----C
Q 031506 66 RYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN----CR-----LLMTSL----P 129 (158)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~i~~a~~g~---~v~~tD~~~~~~~l~~~~~n~~~n~~~----~~-----~~~~d~----~ 129 (158)
..+++.+++||+|+|.|....++-..-. .+++++.++ .+...-..+..|-.. -+ ....+. .
T Consensus 109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp---~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ 185 (484)
T COG5459 109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP---ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADL 185 (484)
T ss_pred CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH---HHHHHHHHHHhhcccccCCCCCCccchhccCCCccce
Confidence 3578889999999998876544433322 677777775 344443444443211 11 111122 5
Q ss_pred CcEEE-ecCCCCCccHHHHHHHHHHH
Q 031506 130 PSHIC-SRVLQDQSSLRLIIIEVGII 154 (158)
Q Consensus 130 fD~Ii-~d~iy~~~~~~~ll~tl~~l 154 (158)
|++|+ .|=+-+...-.++...+..|
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~l 211 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERL 211 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHH
Confidence 88888 88777766666555555444
No 289
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=84.92 E-value=1.2 Score=36.29 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=38.5
Q ss_pred HHHHHHHHHhc-----ccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCC
Q 031506 55 SVILAEYVWQQ-----RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (158)
Q Consensus 55 ~~~la~~l~~~-----~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~ 102 (158)
-..|-.|+... ....+++.+.|+-+|||++|-.+.+.|..|++-|+..
T Consensus 7 K~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 7 KYKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 34556666553 2455778899999999999999999999999999865
No 290
>PRK09242 tropinone reductase; Provisional
Probab=84.76 E-value=8.9 Score=29.55 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=31.5
Q ss_pred CCCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
.++++++|=.|++.|+-.- .+++.|++|++++.+.. -++....++..
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~l~~ 55 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDAD--ALAQARDELAE 55 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHh
Confidence 4577889999986553332 34567899999998753 55555555543
No 291
>PRK05867 short chain dehydrogenase; Provisional
Probab=84.46 E-value=13 Score=28.57 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=32.0
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcC
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~ 118 (158)
++++++|=.|++.|+-.- .+++.|++|++++.++. .++.....+...+
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~ 57 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLD--ALEKLADEIGTSG 57 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHHHHhcC
Confidence 467889999987664322 34667999999998853 4555555554433
No 292
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=83.28 E-value=17 Score=27.16 Aligned_cols=100 Identities=11% Similarity=0.014 Sum_probs=57.7
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHH-hhcCCEEEEEecCChHHHHHHHHHH-HHHcCCcc--eE-EEcC
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMRRV-CEMNKLNC--RL-LMTS 127 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~-a~~g~~v~~tD~~~~~~~l~~~~~n-~~~n~~~~--~~-~~~d 127 (158)
+++..|++.+.+.. ..+.+|+=|||=|-...+.- ...+.++++.|++.. .+..-.+ -.....+. .+ ....
T Consensus 10 ~T~~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R---F~~~~~~~F~fyD~~~p~~~~~~l~ 84 (162)
T PF10237_consen 10 ETAEFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR---FEQFGGDEFVFYDYNEPEELPEELK 84 (162)
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch---HHhcCCcceEECCCCChhhhhhhcC
Confidence 45677777776632 24578999988776666544 224558999999974 1111001 00000000 00 0012
Q ss_pred CCCcEEEecCCCCCcc-HHHHHHHHHHHhcC
Q 031506 128 LPPSHICSRVLQDQSS-LRLIIIEVGIILLS 157 (158)
Q Consensus 128 ~~fD~Ii~d~iy~~~~-~~~ll~tl~~ll~~ 157 (158)
.+||+|++||+|..+. ......|+..|+..
T Consensus 85 ~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~ 115 (162)
T PF10237_consen 85 GKFDVVVIDPPFLSEECLTKTAETIRLLLKP 115 (162)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhCc
Confidence 3899999999996443 34666788777654
No 293
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=82.24 E-value=22 Score=28.67 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccCCCHHH-H--HHhhcCC-EEEEEecCC
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPG-L--VAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~GtGl~~-i--~~a~~g~-~v~~tD~~~ 102 (158)
..-+...+.......+++++|=+|+| |..- + .+++.|+ +|++++.+.
T Consensus 110 ~~G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 110 GLGFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 33344445443334577899999997 4322 2 2456787 599999885
No 294
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=82.12 E-value=17 Score=29.30 Aligned_cols=49 Identities=24% Similarity=0.148 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcccCCCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCCh
Q 031506 55 SVILAEYVWQQRYRFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNR 103 (158)
Q Consensus 55 ~~~la~~l~~~~~~~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~~ 103 (158)
..-+.+-+.......++++|+=+||| .|...+ .+++.|. +|+++|.+..
T Consensus 111 ~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ 162 (284)
T PRK12549 111 WSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPA 162 (284)
T ss_pred HHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 33344444433334577899999999 333222 4556776 8999999863
No 295
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=81.79 E-value=2.9 Score=32.77 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=25.4
Q ss_pred EecchHH--HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCC
Q 031506 50 FVWPCSV--ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (158)
Q Consensus 50 ~vW~~~~--~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~ 102 (158)
..||-.. .+.+|+.+. .++..|-|+|||-+.++-.+. .+.+|.-.|+-.
T Consensus 53 ~~WP~nPvd~iI~~l~~~---~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva 103 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKR---PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA 103 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH---S---EEEEESS-
T ss_pred hcCCCCcHHHHHHHHHhc---CCCEEEEECCCchHHHHHhcc-cCceEEEeeccC
Confidence 4677643 455566543 245689999999999986543 334566666653
No 296
>PRK06172 short chain dehydrogenase; Provisional
Probab=81.52 E-value=15 Score=28.07 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=33.7
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
++++++|=.|++.|+-.- .+++.|++|++++.++. -++.+.+.++..+.++.+...
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA--GGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 467889999986554333 34557889999998864 344444444443333333333
No 297
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=81.25 E-value=7.6 Score=30.81 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n 117 (158)
-.+.|.+.+... ....+..|||-=+|+|..++++.+.|...++.++++. .++.+.+.+...
T Consensus 207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~--y~~~~~~r~~~~ 267 (302)
T COG0863 207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPE--YVEVALKRLQEG 267 (302)
T ss_pred ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHH--HHHHHHHHHHhh
Confidence 345555555554 5567889999999999999999999999999999964 777666666543
No 298
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=80.81 E-value=2.2 Score=33.55 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=32.0
Q ss_pred CCeEEEeccCCCHHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHH
Q 031506 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
...+.|+|||-|-+-+.++.+.. -|++.++-.. +-+..+..+.+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K--VsdYVk~RI~A 106 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK--VSDYVKERIQA 106 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHH--HHHHHHHHHHH
Confidence 34689999999999888888766 4677776654 55566665554
No 299
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=80.31 E-value=7 Score=33.54 Aligned_cols=66 Identities=14% Similarity=0.057 Sum_probs=41.7
Q ss_pred CCCCCeEEEeccC-CCHHH--HHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---C-CCcEEE-ecCCC
Q 031506 68 RFSGANVVELGAG-TSLPG--LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---L-PPSHIC-SRVLQ 139 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~--i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---~-~fD~Ii-~d~iy 139 (158)
..++++|+=+|.| +|..+ ..+.++|++|+++|....+ .. + .++..++.... +.+ . .+|+|+ +.-+-
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~-~~---~-~l~~~gi~~~~-~~~~~~~~~~d~vv~spgi~ 77 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA-VT---Q-RLLELGAIIFI-GHDAENIKDADVVVYSSAIP 77 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh-HH---H-HHHHCCCEEeC-CCCHHHCCCCCEEEECCCCC
Confidence 3456778888887 88773 4788899999999998642 22 1 23434443321 221 1 699999 76553
No 300
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.23 E-value=4.3 Score=33.66 Aligned_cols=41 Identities=34% Similarity=0.490 Sum_probs=31.7
Q ss_pred CCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHHH
Q 031506 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 70 ~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~~ 112 (158)
.+.+|+=+||| .|++++.+++ .|+ +|+++|.++. =++.+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~--Rl~~A~~ 211 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE--RLELAKE 211 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH--HHHHHHH
Confidence 44489999999 8999887766 455 8999999974 5666654
No 301
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.08 E-value=13 Score=30.51 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=35.7
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
.+++++|=.|++.|+-.. .+++.|++|++++.++. .++.+.+.+...+..+.+...
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~--~l~~~~~~~~~~g~~~~~~~~ 63 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEE--ALQAVAEECRALGAEVLVVPT 63 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEe
Confidence 456788888886553222 35667999999998864 566666666555544444333
No 302
>PRK07063 short chain dehydrogenase; Provisional
Probab=79.98 E-value=18 Score=27.89 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=30.3
Q ss_pred CCCCeEEEeccCCCHHH---HHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~---i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
++++++|=.|++.|+-. ..+++.|++|++++.++. .++.....+..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~--~~~~~~~~~~~ 53 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAA--LAERAAAAIAR 53 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHh
Confidence 46788999998755322 235567899999998853 45544444443
No 303
>PRK05876 short chain dehydrogenase; Provisional
Probab=79.92 E-value=16 Score=28.81 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=34.2
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS 127 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d 127 (158)
++++++|=.|++.|+-.- .+++.|++|++++.++. -++.+...+...+.++.+...|
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~--~l~~~~~~l~~~~~~~~~~~~D 63 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKP--GLRQAVNHLRAEGFDVHGVMCD 63 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEeCC
Confidence 467889988887664322 34567899999998853 4444444444334334444443
No 304
>PRK07035 short chain dehydrogenase; Provisional
Probab=79.83 E-value=18 Score=27.69 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=30.3
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
++++++|=.|++.|+-.- .+++.|++|++++.++. .++.+.+.+..
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~--~~~~~~~~~~~ 54 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLD--GCQAVADAIVA 54 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHh
Confidence 466788888988664333 34567899999998753 44444444443
No 305
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=79.76 E-value=24 Score=29.93 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=62.0
Q ss_pred CceEecchHH-HHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcce---
Q 031506 47 YGLFVWPCSV-ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--- 122 (158)
Q Consensus 47 ~g~~vW~~~~-~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~--- 122 (158)
.-++-|+++- .|.+++.... ..+ +||=++=.-|.++..++..+.. ..+|.-- .-..+++|++.|++...
T Consensus 23 ~~l~awdaade~ll~~~~~~~--~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~~---~~~~~~~n~~~n~~~~~~~~ 95 (378)
T PRK15001 23 NPLQAWEAADEYLLQQLDDTE--IRG-PVLILNDAFGALSCALAEHKPY-SIGDSYI---SELATRENLRLNGIDESSVK 95 (378)
T ss_pred CcccccccHHHHHHHHHhhcc--cCC-CEEEEcCchhHHHHHHHhCCCC-eeehHHH---HHHHHHHHHHHcCCCcccce
Confidence 4489999874 2333333311 122 7999999999999988865543 3345432 34468899999988643
Q ss_pred EEEc--C--CCCcEEEecCCCCCccHHHHHHHHHHHh
Q 031506 123 LLMT--S--LPPSHICSRVLQDQSSLRLIIIEVGIIL 155 (158)
Q Consensus 123 ~~~~--d--~~fD~Ii~d~iy~~~~~~~ll~tl~~ll 155 (158)
.... + ..+|+|+.=++=....++.++..+...+
T Consensus 96 ~~~~~~~~~~~~d~vl~~~PK~~~~l~~~l~~l~~~l 132 (378)
T PRK15001 96 FLDSTADYPQQPGVVLIKVPKTLALLEQQLRALRKVV 132 (378)
T ss_pred eecccccccCCCCEEEEEeCCCHHHHHHHHHHHHhhC
Confidence 2222 1 1688887444444455555555555544
No 306
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=79.27 E-value=9.3 Score=30.72 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.7
Q ss_pred CCCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCCh
Q 031506 68 RFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNR 103 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~~ 103 (158)
.++..+|+=+|+| .|...+ +|++.|. +++++|.+..
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v 65 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence 3567789999998 777766 7788887 8999998864
No 307
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=79.26 E-value=1.4 Score=37.55 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=23.9
Q ss_pred CCeEEEeccCCCHHHHHHhh---------c---C-----CEEEEEecCCh
Q 031506 71 GANVVELGAGTSLPGLVAAK---------V---G-----SNVTLTDDSNR 103 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~---------~---g-----~~v~~tD~~~~ 103 (158)
.-+|+|+|||+|..++.+.. + + .+|...|+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~N 113 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSN 113 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCC
Confidence 45899999999988775421 1 1 37888998763
No 308
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=79.15 E-value=3 Score=32.41 Aligned_cols=34 Identities=21% Similarity=0.027 Sum_probs=27.6
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcC-C--EEEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g-~--~v~~tD~~~ 102 (158)
.++.+|||+||..|.-+..+-++. . .|.++|+-+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 367899999999999999877653 2 688888864
No 309
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=79.10 E-value=13 Score=28.45 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=26.1
Q ss_pred CCCCCeEEEeccC-CCH-HHHHHhhcCC-EEEEEecCC
Q 031506 68 RFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl-~~i~~a~~g~-~v~~tD~~~ 102 (158)
.+++.+||=+||| .|. ++..+++.|. +++++|.+.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 4567899999999 343 3336677786 899999884
No 310
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.00 E-value=8.3 Score=33.53 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=27.1
Q ss_pred CCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCC
Q 031506 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~ 102 (158)
+.+++|+=+|.| +|...+ .+.+.|++|+++|..+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 367789999999 777777 4567899999999764
No 311
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=78.66 E-value=4.1 Score=30.62 Aligned_cols=40 Identities=38% Similarity=0.438 Sum_probs=24.0
Q ss_pred EEEeccCC-C-HHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506 74 VVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 74 vLELG~Gt-G-l~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
|-=+|+|+ | .++..++..|.+|++.|.++. .++.+++.++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~--~l~~~~~~i~ 43 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPE--ALERARKRIE 43 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH--HHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChH--HHHhhhhHHH
Confidence 34467763 2 333356777999999999964 6665554443
No 312
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.61 E-value=20 Score=27.54 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=34.2
Q ss_pred CCCCCeEEEeccCCCHHHHHH----hhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 68 RFSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~----a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
.++++++|=.|+. |.+|..+ ++.|++|++++.++. .++.....++..+.++.+...
T Consensus 7 ~~~~k~vlItGa~-g~iG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~i~~~~~~~~~~~~ 66 (255)
T PRK07523 7 DLTGRRALVTGSS-QGIGYALAEGLAQAGAEVILNGRDPA--KLAAAAESLKGQGLSAHALAF 66 (255)
T ss_pred CCCCCEEEEECCc-chHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCceEEEEEc
Confidence 3567899988964 5555543 446889999998863 444444445443433433333
No 313
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=78.52 E-value=21 Score=27.59 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=35.6
Q ss_pred CCCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
.++++++|=.|++.|+-.- .+++.|++|++++.++. -++....++...+.++.....
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 66 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQE--LVDKGLAAYRELGIEAHGYVC 66 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 3567889999988664332 34567899999988753 455555555544433444444
No 314
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=77.32 E-value=14 Score=27.53 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=31.6
Q ss_pred HHHhcccCCCCCeEEEeccC-C-CH-HHHHHhhcCCEEEEEecCC
Q 031506 61 YVWQQRYRFSGANVVELGAG-T-SL-PGLVAAKVGSNVTLTDDSN 102 (158)
Q Consensus 61 ~l~~~~~~~~~~~vLELG~G-t-Gl-~~i~~a~~g~~v~~tD~~~ 102 (158)
.+.+....+.+++||=+|+| + |. ++-.+.+.|++|++++...
T Consensus 34 l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 34 LLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 33334456899999999999 3 77 5556777888999999874
No 315
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=76.97 E-value=33 Score=27.00 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=38.7
Q ss_pred ceEecch-HHHHHHHHHhc---ccCCCCCeEEEeccCCCHHHHHHhh-cC-CEEEEEecCCh
Q 031506 48 GLFVWPC-SVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAK-VG-SNVTLTDDSNR 103 (158)
Q Consensus 48 g~~vW~~-~~~la~~l~~~---~~~~~~~~vLELG~GtGl~~i~~a~-~g-~~v~~tD~~~~ 103 (158)
-+++|+. --.||.-+++- .+..++.+||=||+-+|..---.+- .| ..|.+++.++.
T Consensus 50 eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R 111 (231)
T COG1889 50 EYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPR 111 (231)
T ss_pred ceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecch
Confidence 4799965 23455555542 2344788999999999977665544 33 37999999985
No 316
>PRK07478 short chain dehydrogenase; Provisional
Probab=76.85 E-value=26 Score=26.80 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=33.4
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
++++++|=.|++.|+-.- .+++.|++|++++.++. -++.+...+...+.++.+...
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 62 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA--ELDQLVAEIRAEGGEAVALAG 62 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEc
Confidence 456788888877553222 34567899999998753 455554455444433333333
No 317
>PRK05866 short chain dehydrogenase; Provisional
Probab=76.72 E-value=22 Score=28.37 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=34.0
Q ss_pred CCCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 68 RFSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
...++++|=.|++.|+ |. .+++.|++|++++.+.. .++.+...+...+..+.+...
T Consensus 37 ~~~~k~vlItGasggI-G~~la~~La~~G~~Vi~~~R~~~--~l~~~~~~l~~~~~~~~~~~~ 96 (293)
T PRK05866 37 DLTGKRILLTGASSGI-GEAAAEQFARRGATVVAVARRED--LLDAVADRITRAGGDAMAVPC 96 (293)
T ss_pred CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEc
Confidence 3466789989986554 33 34567899999999853 555555544433333333333
No 318
>PRK07890 short chain dehydrogenase; Provisional
Probab=76.34 E-value=29 Score=26.49 Aligned_cols=44 Identities=27% Similarity=0.371 Sum_probs=28.4
Q ss_pred CCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506 70 SGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
+++++|=.|++.|+-.- .+++.|++|++++.++. -++.+...+.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~ 50 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE--RLDEVAAEID 50 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHH
Confidence 56788888876553222 34567899999998863 4444444444
No 319
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=76.34 E-value=20 Score=27.99 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=33.5
Q ss_pred CCCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
..+++++|=.|++.|+-.- .+++.|++|++++.++. ..+.+...+...+.++.+...
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQE--KAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEC
Confidence 3567888888887654222 34567899999998753 444444444333333333333
No 320
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=76.00 E-value=26 Score=26.82 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
+.++++|=.|++.|+-.- .+++.|++|++++.++. -++.+...+..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~--~~~~~~~~l~~ 55 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAE--RAELAVAKLRQ 55 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHH--HHHHHHHHHHh
Confidence 467789989976553222 34556899999998853 44444444443
No 321
>PRK06194 hypothetical protein; Provisional
Probab=75.93 E-value=26 Score=27.40 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=31.4
Q ss_pred CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
.+++++|=.|++.| +|. .+++.|++|+++|.+.. .++.....+...+.++.+...
T Consensus 4 ~~~k~vlVtGasgg-IG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK06194 4 FAGKVAVITGAASG-FGLAFARIGAALGMKLVLADVQQD--ALDRAVAELRAQGAEVLGVRT 62 (287)
T ss_pred CCCCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEeCChH--HHHHHHHHHHhcCCeEEEEEC
Confidence 35678887776544 444 34557899999998753 444433333333333333433
No 322
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=75.83 E-value=7.9 Score=32.21 Aligned_cols=44 Identities=27% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCCCCeEEEeccCC-CHHHHHHhh-cCC-EEEEEecCChHHHHHHHHHH
Q 031506 68 RFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRV 113 (158)
Q Consensus 68 ~~~~~~vLELG~Gt-Gl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~~n 113 (158)
..++.+||..|||+ |...+.+++ .|. +|++++.++. .++.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~--~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPE--RLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH--HHHHHHHc
Confidence 34678999999885 777765554 566 6999999864 66666553
No 323
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=75.75 E-value=24 Score=27.21 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=24.6
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~ 102 (158)
++++++|=.|++.|+-.- .+++.|++|++++.+.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 467899999987664332 3466789999988764
No 324
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=75.54 E-value=18 Score=30.26 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=28.9
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCCh
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~ 103 (158)
..-+||==|||.|.++.-++..|..+-+-+.+--
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~ 183 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYF 183 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHH
Confidence 3558999999999999999999998877777753
No 325
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=75.47 E-value=7.5 Score=27.61 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=25.4
Q ss_pred EeccCCC--HHHHHH--hhc--CCEEEEEecCChHHHHHHHHHH--HHHcC
Q 031506 76 ELGAGTS--LPGLVA--AKV--GSNVTLTDDSNRIEVLKNMRRV--CEMNK 118 (158)
Q Consensus 76 ELG~GtG--l~~i~~--a~~--g~~v~~tD~~~~~~~l~~~~~n--~~~n~ 118 (158)
|+||+.| ...... ++. +.+|++.|-++. .++.+++| +..|.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~--~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPS--NFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HH--HHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHH--HHHHHhHHHHHHhcC
Confidence 7999999 443322 233 348999998864 88999999 77763
No 326
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=75.29 E-value=6.7 Score=32.30 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=35.3
Q ss_pred CCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHH
Q 031506 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
..+++||-||.|.+.+.+...|. -+.+.|+++. +++.-+.|-.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~--a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPP--AVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHH--HHHHHHHhCC
Confidence 35799999999999999888887 6889999964 7776666655
No 327
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=75.24 E-value=35 Score=26.22 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=29.2
Q ss_pred HHHHHHhcccCCCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCC
Q 031506 58 LAEYVWQQRYRFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~ 102 (158)
|.+|..... .+.++++|=.|++.|+-.- .+++.|++|++++.+.
T Consensus 3 ~~~~~~~~~-~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~ 49 (258)
T PRK06935 3 LDKFSMDFF-SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT 49 (258)
T ss_pred hhhhccccc-cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 344554322 3578899999987664333 3466799999998874
No 328
>PRK10458 DNA cytosine methylase; Provisional
Probab=75.10 E-value=5.9 Score=34.57 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=34.3
Q ss_pred CCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHH
Q 031506 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~ 114 (158)
.-+++||-||.|.+++.+-..|. .|.++|+++. +.+--+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~--A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKH--AVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHH--HHHHHHHHc
Confidence 45899999999999998888887 5788999864 677666664
No 329
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=74.79 E-value=28 Score=26.71 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=33.9
Q ss_pred CCCCCeEEEeccCCCHHHHHH----hhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 68 RFSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~----a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
.++++++|=.|+ +|.+|..+ ++.|++|++++.+.. -++.....+...+.+..+...
T Consensus 9 ~~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 9 DLSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAE--ELEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred CcCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEc
Confidence 356788999995 45556543 446889999998753 445454444443333333333
No 330
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=74.61 E-value=9.3 Score=33.38 Aligned_cols=70 Identities=9% Similarity=0.003 Sum_probs=46.4
Q ss_pred CCCeEEEeccCCCHHHHHHhh---cC---CEEEEEecCChHHHHHHHHHHHHHcCCcc---eEE----------EcCCCC
Q 031506 70 SGANVVELGAGTSLPGLVAAK---VG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNC---RLL----------MTSLPP 130 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~---~g---~~v~~tD~~~~~~~l~~~~~n~~~n~~~~---~~~----------~~d~~f 130 (158)
++..+.|.-||||-+-+...+ .| ..+++.+.... +...++.|...++... ... ...++|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~--~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHT--TYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchH--HHHHHHHHHHHcCCCccccCcccCCcCCCccccccccC
Confidence 346899999999987664332 22 25888888865 8888888876654321 111 113579
Q ss_pred cEEEecCCCCC
Q 031506 131 SHICSRVLQDQ 141 (158)
Q Consensus 131 D~Ii~d~iy~~ 141 (158)
|.|+++|+|..
T Consensus 295 D~v~~NpPf~~ 305 (501)
T TIGR00497 295 EVVVSNPPYSI 305 (501)
T ss_pred CEEeecCCccc
Confidence 99998887654
No 331
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=74.33 E-value=37 Score=25.98 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=35.0
Q ss_pred CCCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
.++++++|=.|++.|+-.- .+++.|++|++++.++. .++.+...++..+....+...
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 67 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAA--TLEAAVAALRAAGGAAEALAF 67 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 3578889989976554332 23456899999999853 455555555444433444433
No 332
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=74.11 E-value=15 Score=31.63 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=28.6
Q ss_pred cCCCCCeEEEeccC-CCHHHHHH-hhcCCEEEEEecCCh
Q 031506 67 YRFSGANVVELGAG-TSLPGLVA-AKVGSNVTLTDDSNR 103 (158)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~~i~~-a~~g~~v~~tD~~~~ 103 (158)
..+.+++|+=+||| .|...... ...|++|+++|.++.
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 34689999999999 67666544 446889999999864
No 333
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=74.06 E-value=18 Score=30.63 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=26.3
Q ss_pred CCCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCC
Q 031506 68 RFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~ 102 (158)
.++...||=+||| -|.+++ -++.+|. ++=.+|++.
T Consensus 63 ~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~Dv 100 (427)
T KOG2017|consen 63 SLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDV 100 (427)
T ss_pred ccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccce
Confidence 3466789999999 788887 4566676 777777775
No 334
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=74.00 E-value=11 Score=32.56 Aligned_cols=68 Identities=9% Similarity=0.040 Sum_probs=48.1
Q ss_pred CCCCCeEEEeccCCCHHHHHHh-hcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceEE-EcCC----------CCcEE
Q 031506 68 RFSGANVVELGAGTSLPGLVAA-KVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLL-MTSL----------PPSHI 133 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a-~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~-~~d~----------~fD~I 133 (158)
..++.||||+.|-.|.=+...| -+. ..|+|.|.+.. -+..++.|+..-+....+. ..|. .||=|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~--r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNEN--RLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchH--HHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 3478899999999875554333 222 28999999975 7889999999988654332 2332 59999
Q ss_pred EecC
Q 031506 134 CSRV 137 (158)
Q Consensus 134 i~d~ 137 (158)
+.|.
T Consensus 317 LLDA 320 (460)
T KOG1122|consen 317 LLDA 320 (460)
T ss_pred eecC
Confidence 9443
No 335
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=73.90 E-value=19 Score=29.42 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=21.5
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCCEEEEEecCC
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~ 102 (158)
....|-|+|||-+-++. +...+|+..|+-.
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a 209 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA 209 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeec
Confidence 44578999999887664 4445777777754
No 336
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=73.85 E-value=13 Score=31.24 Aligned_cols=77 Identities=9% Similarity=-0.041 Sum_probs=47.2
Q ss_pred CeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-----CCCcEEE-ecCCCCCcc--
Q 031506 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-----LPPSHIC-SRVLQDQSS-- 143 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-----~~fD~Ii-~d~iy~~~~-- 143 (158)
...+|+|+|.|.+.-.+.....+|-+++.... .+-..+.++. -+ +.....| .+-|+|+ .=|+.+-.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp--~v~~~a~~~~-~g--V~~v~gdmfq~~P~~daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLP--FVLAAAPYLA-PG--VEHVAGDMFQDTPKGDAIWMKWILHDWTDED 253 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHH--HHHhhhhhhc-CC--cceecccccccCCCcCeEEEEeecccCChHH
Confidence 57899999999888866667678888888863 4444444443 33 2222222 2667888 666666443
Q ss_pred HHHHHHHHHH
Q 031506 144 LRLIIIEVGI 153 (158)
Q Consensus 144 ~~~ll~tl~~ 153 (158)
.-++++..+.
T Consensus 254 cvkiLknC~~ 263 (342)
T KOG3178|consen 254 CVKILKNCKK 263 (342)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 337
>PRK07677 short chain dehydrogenase; Provisional
Probab=73.70 E-value=30 Score=26.49 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=26.8
Q ss_pred CCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506 71 GANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
++++|=.|++.|+-.- .+++.|++|++++.++. .++.+...+.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~--~~~~~~~~~~ 46 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKE--KLEEAKLEIE 46 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHH
Confidence 3567878886553222 34567889999998853 4454444443
No 338
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=73.60 E-value=17 Score=28.08 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=25.9
Q ss_pred CCCCCeEEEeccC-CCH-HHHHHhhcCC-EEEEEecCC
Q 031506 68 RFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl-~~i~~a~~g~-~v~~tD~~~ 102 (158)
.++..+|+=+||| .|. ++..+++.|. ++++.|.+.
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4577899999999 443 3336677787 799999883
No 339
>PRK08589 short chain dehydrogenase; Validated
Probab=73.53 E-value=34 Score=26.70 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=32.0
Q ss_pred CCCCeEEEeccCCCHHH---HHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~---i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
++++++|=.|++.|+-. ..+++.|++|++++.++ .++.....+...+.++.+...
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~---~~~~~~~~~~~~~~~~~~~~~ 61 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAE---AVSETVDKIKSNGGKAKAYHV 61 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH---HHHHHHHHHHhcCCeEEEEEe
Confidence 46778888888766422 23456789999999883 334333334333333444433
No 340
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=73.20 E-value=6.8 Score=31.04 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=18.2
Q ss_pred HHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506 87 VAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (158)
Q Consensus 87 ~~a~~g~~v~~tD~~~~~~~l~~~~~n~ 114 (158)
.++++|..|.++|-++.....+. ++|.
T Consensus 25 ~la~~G~~V~lIDaDpn~pl~~W-~~~a 51 (231)
T PF07015_consen 25 ELAARGARVALIDADPNQPLAKW-AENA 51 (231)
T ss_pred HHHHCCCeEEEEeCCCCCcHHHH-HHhc
Confidence 45667899999999986444444 3343
No 341
>PRK07791 short chain dehydrogenase; Provisional
Probab=72.61 E-value=36 Score=26.97 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=25.1
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~ 102 (158)
++++++|=.|++.|+-.- .+++.|++|++++.+.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~ 40 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGV 40 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCc
Confidence 467889999988775433 3566789999998764
No 342
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=72.46 E-value=17 Score=31.81 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=50.6
Q ss_pred CeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHH-HHHHHHHcCCcceEEEc--------CCCCcEEE-------
Q 031506 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKN-MRRVCEMNKLNCRLLMT--------SLPPSHIC------- 134 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~-~~~n~~~n~~~~~~~~~--------d~~fD~Ii------- 134 (158)
-++|.+|||.--+...+-+-|. .|+-+|+|+. .++. ...|+..+.. .++... |..||+|+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V--~V~~m~~~~~~~~~~-~~~~~~d~~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSV--VVAAMQVRNAKERPE-MQMVEMDMDQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHH--HHHHHHhccccCCcc-eEEEEecchhccCCCcceeEEEecCcccc
Confidence 3899999999888888888787 8999999975 5654 4445433221 222222 33666666
Q ss_pred ----ecCCCCCccHHHHHHHHHHHhc
Q 031506 135 ----SRVLQDQSSLRLIIIEVGIILL 156 (158)
Q Consensus 135 ----~d~iy~~~~~~~ll~tl~~ll~ 156 (158)
++.+++.......+..++.++.
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~ 152 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLA 152 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhc
Confidence 2334444444555566655554
No 343
>PRK06701 short chain dehydrogenase; Provisional
Probab=72.27 E-value=39 Score=26.84 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=33.3
Q ss_pred CCCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
.++++++|=.|++.|+-.- .+++.|++|++++.+.. ..++.....++..+.++.+...
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 103 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEH-EDANETKQRVEKEGVKCLLIPG 103 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcc-hHHHHHHHHHHhcCCeEEEEEc
Confidence 4567889999987554322 34567899999988753 1233333333333333334433
No 344
>PRK06128 oxidoreductase; Provisional
Probab=72.24 E-value=44 Score=26.57 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=23.5
Q ss_pred CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~ 102 (158)
++++++|=.|+..|+ |. .+++.|++|+++..+.
T Consensus 53 l~~k~vlITGas~gI-G~~~a~~l~~~G~~V~i~~~~~ 89 (300)
T PRK06128 53 LQGRKALITGADSGI-GRATAIAFAREGADIALNYLPE 89 (300)
T ss_pred cCCCEEEEecCCCcH-HHHHHHHHHHcCCEEEEEeCCc
Confidence 467889999976553 33 3456789999887764
No 345
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=72.16 E-value=18 Score=30.16 Aligned_cols=35 Identities=34% Similarity=0.529 Sum_probs=25.3
Q ss_pred CCCCCeEEEeccC-CCHHH-HHHhhcCC-EEEEEecCC
Q 031506 68 RFSGANVVELGAG-TSLPG-LVAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~-i~~a~~g~-~v~~tD~~~ 102 (158)
.+++.+||=+||| .|... ..++..|. +++++|.+.
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3567899999999 34333 35677776 899988875
No 346
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=71.97 E-value=39 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=31.8
Q ss_pred CCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 70 SGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
+++++|=.|+. |.+|.. +++.|++|++++.+.. ..+.+...+...+....+...
T Consensus 2 ~~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T TIGR03206 2 KDKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNRE--AAEKVAADIRAKGGNAQAFAC 59 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHH--HHHHHHHHHHhcCCcEEEEEc
Confidence 46778888865 444443 3456889999998853 444444444433333444433
No 347
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=71.80 E-value=24 Score=27.34 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=25.1
Q ss_pred CCCCCeEEEeccC-CCHH-HHHHhhcCC-EEEEEecCC
Q 031506 68 RFSGANVVELGAG-TSLP-GLVAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~-~i~~a~~g~-~v~~tD~~~ 102 (158)
.+...+|+=+||| .|.. +..+++.|. +++++|.+.
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4567789999999 4433 336677787 888887765
No 348
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.79 E-value=41 Score=25.41 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=27.5
Q ss_pred CCCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
++++++|=.|++.| +|.. +++.|++|++++.++. -++.....+.
T Consensus 3 ~~~~~~lItG~~g~-iG~~~a~~l~~~G~~vi~~~r~~~--~~~~~~~~~~ 50 (253)
T PRK08217 3 LKDKVIVITGGAQG-LGRAMAEYLAQKGAKLALIDLNQE--KLEEAVAECG 50 (253)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHH
Confidence 45778898887544 3443 3456889999998863 3443333343
No 349
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=71.49 E-value=40 Score=25.83 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=28.9
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~ 114 (158)
+.++++|=.|++.|+-.- .+++.|++|++++.+.. .++.+...+
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~--~~~~~~~~l 55 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD--AANHVVDEI 55 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHH
Confidence 467899999977664333 34556889999988753 444444333
No 350
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=71.32 E-value=15 Score=28.97 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=24.1
Q ss_pred CCCCeEEEeccC-CCHHHHHHhh-cCCE-EEEEecCCh
Q 031506 69 FSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSNR 103 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i~~a~-~g~~-v~~tD~~~~ 103 (158)
.++.+||=.|+| .|+.++.+++ +|++ |+++|.++.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~ 156 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD 156 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 467889888886 5555554444 5775 999987753
No 351
>PRK07109 short chain dehydrogenase; Provisional
Probab=71.26 E-value=35 Score=27.86 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=34.4
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
.+++++|=.|++.|+-.. .+++.|++|++++.++. -++.+...+...+.++.+...
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~--~l~~~~~~l~~~g~~~~~v~~ 64 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEE--GLEALAAEIRAAGGEALAVVA 64 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHHcCCcEEEEEe
Confidence 456788888876553332 34567899999998753 555555555544444433333
No 352
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=70.66 E-value=12 Score=25.19 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=29.9
Q ss_pred CeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-e-cCCCCC
Q 031506 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-S-RVLQDQ 141 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~-d~iy~~ 141 (158)
++|| +-||+|..+-++ ++.+++-++.+++++.+.... ..+|+|+ + .+-|..
T Consensus 4 ~~IL-l~C~~G~sSS~l------------------~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~ 64 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLL------------------VNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYML 64 (95)
T ss_pred cEEE-EECCCchhHHHH------------------HHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHH
Confidence 4566 788888665433 233344444455554443331 2578888 4 444544
Q ss_pred ccHHHH
Q 031506 142 SSLRLI 147 (158)
Q Consensus 142 ~~~~~l 147 (158)
+.++..
T Consensus 65 ~~i~~~ 70 (95)
T TIGR00853 65 PDLKKE 70 (95)
T ss_pred HHHHHH
Confidence 444443
No 353
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=70.66 E-value=17 Score=29.57 Aligned_cols=42 Identities=29% Similarity=0.357 Sum_probs=28.5
Q ss_pred CCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 031506 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~~ 111 (158)
..++.+||=.||| .|+.++.+++ +|+ +|+++|.++. -++.++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~--~~~~a~ 211 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR--SLSLAR 211 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH--HHHHHH
Confidence 3467888888886 5666665554 577 7999998864 455544
No 354
>PRK08303 short chain dehydrogenase; Provisional
Probab=70.35 E-value=43 Score=27.01 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=24.5
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecC
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDS 101 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~ 101 (158)
++++.+|=.|++.|+-.- .+++.|++|++++.+
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 567899999988763222 345678999999886
No 355
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=70.10 E-value=23 Score=29.70 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=25.0
Q ss_pred CCCCeEEEeccC-CCH-HHHHHhhcCC-EEEEEecC
Q 031506 69 FSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDS 101 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl-~~i~~a~~g~-~v~~tD~~ 101 (158)
+++.+|+=+||| .|. +...+++.|. +++++|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467789999998 444 3336677787 89999987
No 356
>PRK06949 short chain dehydrogenase; Provisional
Probab=69.93 E-value=43 Score=25.50 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=32.9
Q ss_pred CCCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
..++++|=.|++ |.+|.. +++.|++|++++.++. .++.+...+...+.+..+...
T Consensus 7 ~~~k~ilItGas-g~IG~~~a~~l~~~G~~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 65 (258)
T PRK06949 7 LEGKVALVTGAS-SGLGARFAQVLAQAGAKVVLASRRVE--RLKELRAEIEAEGGAAHVVSL 65 (258)
T ss_pred CCCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEe
Confidence 567888888854 444543 3456889999998853 455555544433333333333
No 357
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=69.80 E-value=44 Score=25.64 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=24.5
Q ss_pred CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCCh
Q 031506 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~ 103 (158)
++++.+|=.|+..| +|. .+++.|++|+++|....
T Consensus 8 l~~k~~lItG~~~g-IG~a~a~~l~~~G~~vv~~~~~~~ 45 (253)
T PRK08993 8 LEGKVAVVTGCDTG-LGQGMALGLAEAGCDIVGINIVEP 45 (253)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEecCcch
Confidence 56788999998655 333 34557899999988753
No 358
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=69.56 E-value=21 Score=27.05 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=27.9
Q ss_pred CCCCeEEEeccCC-CHHHHHHh-hcCCEEEEEecCChHHHHHHHH
Q 031506 69 FSGANVVELGAGT-SLPGLVAA-KVGSNVTLTDDSNRIEVLKNMR 111 (158)
Q Consensus 69 ~~~~~vLELG~Gt-Gl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~ 111 (158)
.++.+||-.|+|+ |...+.++ ..|.+|++++.++. ..+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~--~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDE--KLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH--HHHHHH
Confidence 4678999999985 44444333 36789999998853 444443
No 359
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=69.47 E-value=17 Score=29.57 Aligned_cols=41 Identities=29% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHH
Q 031506 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNM 110 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~ 110 (158)
..++.+||=.||| .|...+.+++ .|++|+++|.++. -++.+
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~--~~~~~ 206 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE--KLEMM 206 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH--HHHHH
Confidence 3467899999986 4666554444 5779999998763 44444
No 360
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=69.43 E-value=8.1 Score=31.55 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=27.8
Q ss_pred CCCCeEEEeccC-CCHHHHHHhh--cC-CEEEEEecCChHHHHHHHH
Q 031506 69 FSGANVVELGAG-TSLPGLVAAK--VG-SNVTLTDDSNRIEVLKNMR 111 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i~~a~--~g-~~v~~tD~~~~~~~l~~~~ 111 (158)
.++.+||=+||| .|+.++.+++ .| .+|+++|.++. -++.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~--k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQE--KLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHh--HHHHHh
Confidence 357899999987 6666665454 34 58999998863 444444
No 361
>PRK07985 oxidoreductase; Provisional
Probab=69.39 E-value=55 Score=26.06 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCCCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
.++++++|=.|++.|+ ++..+++.|++|++++.+...+..+.+...+...+..+.+...
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPG 107 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEc
Confidence 3577899999976553 2224566799999987654222334444333333333333333
No 362
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=69.39 E-value=23 Score=27.54 Aligned_cols=85 Identities=9% Similarity=0.026 Sum_probs=40.4
Q ss_pred CCCCeEEEeccCCCHHHHHHhhc------CCEEEEEecCChHHHHHHHHHHHHHcC--CcceEEEcCC------------
Q 031506 69 FSGANVVELGAGTSLPGLVAAKV------GSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRLLMTSL------------ 128 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~------g~~v~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~~d~------------ 128 (158)
.+...|+|+|.=.|--.+..|.. ..+|+++|++.. .... ..++... -++++...|.
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir--~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIR--PHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GT--T--S---GGGG----TTEEEEES-SSSTHHHHTSGSS
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcc--hhch--HHHhhccccCceEEEECCCCCHHHHHHHHHh
Confidence 46679999999999888866542 249999999643 1111 1111111 1244443321
Q ss_pred ----CCcEEEecCCCCCccHHHHHHHHHHHhcC
Q 031506 129 ----PPSHICSRVLQDQSSLRLIIIEVGIILLS 157 (158)
Q Consensus 129 ----~fD~Ii~d~iy~~~~~~~ll~tl~~ll~~ 157 (158)
...+|+-|.=+..+..-.-++....++.+
T Consensus 107 ~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~ 139 (206)
T PF04989_consen 107 ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSP 139 (206)
T ss_dssp ----SSEEEEESS----SSHHHHHHHHHHT--T
T ss_pred hccCCceEEEECCCccHHHHHHHHHHhCccCCC
Confidence 34466677766666666666666655543
No 363
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=69.38 E-value=27 Score=29.06 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=26.3
Q ss_pred CCCCCeEEEeccC-CCH-HHHHHhhcCC-EEEEEecCC
Q 031506 68 RFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl-~~i~~a~~g~-~v~~tD~~~ 102 (158)
.+++.+||=+||| .|. ++..+++.|. +++++|.+.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4567899999999 443 3336777887 899999975
No 364
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=69.23 E-value=16 Score=28.90 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=25.1
Q ss_pred CCCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCC
Q 031506 68 RFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~ 102 (158)
.++..+|+=+||| .|..-. .+++.|. +++++|.+.
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4567899999998 443333 5666776 899998875
No 365
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=69.06 E-value=7.3 Score=29.45 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=17.3
Q ss_pred EEEeccC-CCHHHH-HHhhcCCEEEEEecCCh
Q 031506 74 VVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 74 vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~ 103 (158)
|-=+|.| .|++.. .+|+.|.+|+++|.++.
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 3345555 454333 56788999999999964
No 366
>PRK07814 short chain dehydrogenase; Provisional
Probab=68.79 E-value=52 Score=25.43 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=29.0
Q ss_pred CCCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
++++++|=.|++ |.+|.. +++.|++|++++.++. -++.+.+.+.
T Consensus 8 ~~~~~vlItGas-ggIG~~~a~~l~~~G~~Vi~~~r~~~--~~~~~~~~l~ 55 (263)
T PRK07814 8 LDDQVAVVTGAG-RGLGAAIALAFAEAGADVLIAARTES--QLDEVAEQIR 55 (263)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHH
Confidence 567889989965 444543 4557899999999853 4444444443
No 367
>PRK05650 short chain dehydrogenase; Provisional
Probab=68.52 E-value=44 Score=25.91 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=28.2
Q ss_pred eEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 73 NVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 73 ~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
++|=.|+..| +|. .+++.|++|++++.+.. -++.+...+...+.+..+...
T Consensus 2 ~vlVtGasgg-IG~~la~~l~~~g~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 56 (270)
T PRK05650 2 RVMITGAASG-LGRAIALRWAREGWRLALADVNEE--GGEETLKLLREAGGDGFYQRC 56 (270)
T ss_pred EEEEecCCCh-HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 4666676544 444 34566889999998753 344444444433333333333
No 368
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=67.91 E-value=5.8 Score=24.85 Aligned_cols=27 Identities=37% Similarity=0.603 Sum_probs=17.4
Q ss_pred eccC-CCHHHH-HHhhcCCEEEEEecCCh
Q 031506 77 LGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 77 LG~G-tGl~~i-~~a~~g~~v~~tD~~~~ 103 (158)
+|+| +|+.+- .+++.|.+|++.|-++.
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 4666 444333 45667889999998863
No 369
>PRK08339 short chain dehydrogenase; Provisional
Probab=67.72 E-value=36 Score=26.48 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=29.9
Q ss_pred CCCCeEEEeccCCCHHH---HHHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~---i~~a~~g~~v~~tD~~~~~~~l~~~~~n~ 114 (158)
++++++|=.|++.|+-. ..+++.|++|++++.+.. -++.+.+.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~~ 52 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEE--NLKKAREKI 52 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHH
Confidence 56788898998876432 245667999999998853 444444444
No 370
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=67.70 E-value=31 Score=28.71 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=26.0
Q ss_pred CCCCCeEEEeccC-CCH-HHHHHhhcCC-EEEEEecCC
Q 031506 68 RFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl-~~i~~a~~g~-~v~~tD~~~ 102 (158)
.++..+||=+||| .|. ++..+++.|. +++++|.+.
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4567789999999 443 3335677787 999999874
No 371
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.63 E-value=31 Score=26.72 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=28.0
Q ss_pred CCCCeEEEeccC-CCHHHHH----HhhcCCEEEEEecCChHHHHHHHH
Q 031506 69 FSGANVVELGAG-TSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMR 111 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~ 111 (158)
++++++|=.|+| ++-+|.. +++.|++|++++.+..++.++.+.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~ 52 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIA 52 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHH
Confidence 467889999994 4555554 455689999998764223444333
No 372
>PRK08643 acetoin reductase; Validated
Probab=67.31 E-value=54 Score=25.03 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=30.1
Q ss_pred CCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 71 GANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
++++|=.|+..| +|. .+++.|++|++++.+.. .++.+...+...+....+...
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEE--TAQAAADKLSKDGGKAIAVKA 58 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEC
Confidence 356676776555 444 34556889999998853 455454444433333333333
No 373
>PRK06720 hypothetical protein; Provisional
Probab=67.24 E-value=48 Score=24.46 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=28.9
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~ 114 (158)
++++.+|=-|++.|+-.- .+++.|++|+++|.++. .++.....+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~--~~~~~~~~l 60 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQE--SGQATVEEI 60 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHH
Confidence 467788888887665332 45567899999998753 444433333
No 374
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=66.89 E-value=65 Score=25.80 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=36.1
Q ss_pred cCCCCCeEEEeccCCCHH---HHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506 67 YRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 67 ~~~~~~~vLELG~GtGl~---~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
..+.++.+|-=|+..|+- +..+++.|++|+.++.++. .++..+.-+..
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~--~~~~~~~~~~~ 54 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEE--RLEETAQELGG 54 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHh
Confidence 356888999999998854 4578899999999999964 55555544443
No 375
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=66.89 E-value=18 Score=29.31 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=44.2
Q ss_pred CeEEEeccC---CCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCC-cceEEEcCC-----------------
Q 031506 72 ANVVELGAG---TSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRLLMTSL----------------- 128 (158)
Q Consensus 72 ~~vLELG~G---tGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~~d~----------------- 128 (158)
...|||||| .|.+--.+.+. .++|+-+|.++. ++...+.-+..+.- ...+...|.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPv--v~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPV--VLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHH--HHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCch--HHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 579999999 44555443332 569999999964 77777776665542 234444432
Q ss_pred ---CCcEEEecCCCCCc---cHHHHHHHHHHHhcC
Q 031506 129 ---PPSHICSRVLQDQS---SLRLIIIEVGIILLS 157 (158)
Q Consensus 129 ---~fD~Ii~d~iy~~~---~~~~ll~tl~~ll~~ 157 (158)
+.=+++..++++.+ ....+++++..-|.+
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap 182 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP 182 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC
Confidence 33344477776654 466666666554443
No 376
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=66.51 E-value=53 Score=24.71 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=32.3
Q ss_pred CCCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
..++++|=.|++ |.+|.. +++.|++|++++.++. .+......+...+....+...
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 62 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGD--DAAATAELVEAAGGKARARQV 62 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEC
Confidence 356788878865 555553 3556889999998853 344444444433333444433
No 377
>PRK06125 short chain dehydrogenase; Provisional
Probab=65.92 E-value=59 Score=24.96 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=29.1
Q ss_pred CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
++++++|=.|++.| +|. .+++.|++|++++.++. .++.+...+.
T Consensus 5 ~~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~ 52 (259)
T PRK06125 5 LAGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDAD--ALEALAADLR 52 (259)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHH
Confidence 45778888897655 343 34567899999998753 4554444443
No 378
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=65.68 E-value=34 Score=25.47 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=21.5
Q ss_pred eEEEeccC-CCH-HHHHHhhcCC-EEEEEecCC
Q 031506 73 NVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 73 ~vLELG~G-tGl-~~i~~a~~g~-~v~~tD~~~ 102 (158)
+|+=+||| .|. +...+++.|. ++++.|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47778988 443 3336677787 799999985
No 379
>PRK05854 short chain dehydrogenase; Provisional
Probab=65.50 E-value=59 Score=26.17 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=25.6
Q ss_pred CCCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCCh
Q 031506 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~ 103 (158)
..+++++|=.|++.|+-.- .+++.|++|+++..+..
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~ 49 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRA 49 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3567888888887664222 34667899999988753
No 380
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.33 E-value=17 Score=31.12 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=37.8
Q ss_pred CCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc-CC-CCcEEE-ecCC
Q 031506 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT-SL-PPSHIC-SRVL 138 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~-d~-~fD~Ii-~d~i 138 (158)
+++++|+=+|.| +|..+. .+.++|+.|++.|.... .... +...+........ .. .+|+|+ +.-+
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~--~~~~----l~~~g~~~~~~~~~~~~~~d~vv~sp~i 75 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPA--SRAK----AAAAGITTADLRTADWSGFAALVLSPGV 75 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChh--hHHH----HHhcCccccCCChhHHcCCCEEEECCCC
Confidence 356788888888 665443 56778999999997643 2222 2223332111000 11 689999 7755
No 381
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=65.30 E-value=20 Score=29.04 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=25.0
Q ss_pred CCCCCeEEEeccC-CCHHHHHHh-hcCCEEEEEecCCh
Q 031506 68 RFSGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSNR 103 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i~~a-~~g~~v~~tD~~~~ 103 (158)
..++.+||=.|+| .|..++.+| .+|++|++++.++.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~ 200 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAA 200 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence 3467889989976 454445344 46789999998864
No 382
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=65.05 E-value=69 Score=25.89 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=29.9
Q ss_pred HHHHHHHHhcccCCCCCeEEEeccCCCHHHH--HHhhcCC-EEEEEecCC
Q 031506 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGL--VAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~i--~~a~~g~-~v~~tD~~~ 102 (158)
.-+.+-+.......+++++|=||||--.-++ .+++.|. ++++.+.+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3344444433334567899999999433344 3456776 899999875
No 383
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=65.01 E-value=12 Score=33.06 Aligned_cols=41 Identities=29% Similarity=0.414 Sum_probs=30.8
Q ss_pred CCCCeEEEeccC-CCHHHHHHh-hcCCEEEEEecCChHHHHHHHH
Q 031506 69 FSGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMR 111 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i~~a-~~g~~v~~tD~~~~~~~l~~~~ 111 (158)
.++.+|+=+||| .|+.++.++ .+|+.|++.|.++. .++.++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~--rle~a~ 204 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE--VKEQVQ 204 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHH
Confidence 356799999999 788887544 46899999999864 455444
No 384
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=64.88 E-value=29 Score=28.15 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=28.1
Q ss_pred ccCCCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCCh
Q 031506 66 RYRFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 66 ~~~~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~ 103 (158)
...+.+++|+=+|+| .|...+ .+...|++|++.|.++.
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 345678999999998 555444 34557889999999853
No 385
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=64.31 E-value=91 Score=26.79 Aligned_cols=47 Identities=17% Similarity=0.042 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcccC-CCCCeEEEeccCCCH--H---HHHHhhcCCEEEEEecCC
Q 031506 55 SVILAEYVWQQRYR-FSGANVVELGAGTSL--P---GLVAAKVGSNVTLTDDSN 102 (158)
Q Consensus 55 ~~~la~~l~~~~~~-~~~~~vLELG~GtGl--~---~i~~a~~g~~v~~tD~~~ 102 (158)
-.-..+|+..+... ..++++|=.|+.+|+ . +..+ ..|++++++++..
T Consensus 24 v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~ 76 (398)
T PRK13656 24 VKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEK 76 (398)
T ss_pred HHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCc
Confidence 34455677665443 456899999998764 2 3344 6789999998753
No 386
>PRK08628 short chain dehydrogenase; Provisional
Probab=63.91 E-value=63 Score=24.65 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=24.4
Q ss_pred CCCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCCh
Q 031506 68 RFSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~ 103 (158)
+++++++|=.|++.| +|. .+++.|++|++++.++.
T Consensus 4 ~l~~~~ilItGasgg-iG~~la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 4 NLKDKVVIVTGGASG-IGAAISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CcCCCEEEEeCCCCh-HHHHHHHHHHHcCCcEEEEcCChh
Confidence 356778888887644 444 34567889999988763
No 387
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.85 E-value=25 Score=30.37 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=27.2
Q ss_pred cCCCCCeEEEeccC-CCHH-HHHHhhcCCEEEEEecCC
Q 031506 67 YRFSGANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSN 102 (158)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~-~i~~a~~g~~v~~tD~~~ 102 (158)
..+.+++|+=+|+| +|.. ...+.+.|+.|++.|.+.
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 45577889999999 6752 225677899999999654
No 388
>PRK07576 short chain dehydrogenase; Provisional
Probab=63.80 E-value=67 Score=24.89 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=24.0
Q ss_pred CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCCh
Q 031506 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~ 103 (158)
++++++|=.|++. .+|. .++..|++|++++.++.
T Consensus 7 ~~~k~ilItGasg-gIG~~la~~l~~~G~~V~~~~r~~~ 44 (264)
T PRK07576 7 FAGKNVVVVGGTS-GINLGIAQAFARAGANVAVASRSQE 44 (264)
T ss_pred CCCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4677899888654 4444 34557889999998853
No 389
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.79 E-value=61 Score=24.43 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=27.1
Q ss_pred CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~ 114 (158)
++++++|=.|+..| +|. .++++|++|++++.++. -++.+..++
T Consensus 3 ~~~~~vlItGasg~-iG~~l~~~l~~~G~~V~~~~r~~~--~~~~~~~~~ 49 (251)
T PRK07231 3 LEGKVAIVTGASSG-IGEGIARRFAAEGARVVVTDRNEE--AAERVAAEI 49 (251)
T ss_pred cCCcEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHH
Confidence 35667888887644 343 34556889999999863 344333343
No 390
>PRK05872 short chain dehydrogenase; Provisional
Probab=63.76 E-value=46 Score=26.41 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=28.4
Q ss_pred CCCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHH
Q 031506 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~ 112 (158)
.++++++|=.|++.|+-.. .+++.|++|++++.++. .++.+.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~l~~~~~ 51 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEA--ELAALAA 51 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHH
Confidence 3567889988877553222 34567899999998853 4444333
No 391
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.71 E-value=55 Score=27.74 Aligned_cols=63 Identities=25% Similarity=0.336 Sum_probs=37.1
Q ss_pred CCCCeEEEeccCCCHHHH--HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC------CCCcEEE
Q 031506 69 FSGANVVELGAGTSLPGL--VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS------LPPSHIC 134 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i--~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d------~~fD~Ii 134 (158)
.++++|+=+|+|..-.++ .+++.|++|+++|.+.. +.++.....+...++. +...+ ..+|+|+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-DQLKEALEELGELGIE--LVLGEYPEEFLEGVDLVV 73 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHHHHhcCCE--EEeCCcchhHhhcCCEEE
Confidence 357889999988421222 45667999999999863 2333322334443433 32222 2699888
No 392
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=63.53 E-value=26 Score=28.06 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=37.8
Q ss_pred HHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHc
Q 031506 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN 117 (158)
Q Consensus 59 a~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n 117 (158)
.+-+.++...+.+.-|.|+|-|.|.++..+...|. ...+++.+.. .+.-++.-.++.
T Consensus 39 T~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~R--Fip~LQ~L~EAa 96 (326)
T KOG0821|consen 39 TDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTR--FIPGLQMLSEAA 96 (326)
T ss_pred HHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccc--cChHHHHHhhcC
Confidence 33344445566777899999999998887777765 6777777764 444444433333
No 393
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=63.15 E-value=33 Score=22.55 Aligned_cols=46 Identities=26% Similarity=0.219 Sum_probs=23.6
Q ss_pred HHHHHHHhcccCCCCCeEEEeccCCC--HHHHHHhh--cCCEEEEEecCC
Q 031506 57 ILAEYVWQQRYRFSGANVVELGAGTS--LPGLVAAK--VGSNVTLTDDSN 102 (158)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtG--l~~i~~a~--~g~~v~~tD~~~ 102 (158)
...+|+.........++||=+||-|| +.+..++. .|++.+++-++.
T Consensus 25 ~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 25 NQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp HHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred HHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 34556666544434489999999876 45444333 456888887653
No 394
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=62.81 E-value=51 Score=23.20 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=40.6
Q ss_pred eEEEeccCCCHHHH----HHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------------------C
Q 031506 73 NVVELGAGTSLPGL----VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------------------P 129 (158)
Q Consensus 73 ~vLELG~GtGl~~i----~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------------------~ 129 (158)
.+|=.|++.| +|. .+++.|. .|+++..++..+..+.....+...+.++.+...|. +
T Consensus 2 ~~lItGa~~g-iG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGASSG-IGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCCCH-HHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566676654 444 3455655 78888887322355656666665555566665542 7
Q ss_pred CcEEE-ecCCCCC
Q 031506 130 PSHIC-SRVLQDQ 141 (158)
Q Consensus 130 fD~Ii-~d~iy~~ 141 (158)
+|++| +--++..
T Consensus 81 ld~li~~ag~~~~ 93 (167)
T PF00106_consen 81 LDILINNAGIFSD 93 (167)
T ss_dssp ESEEEEECSCTTS
T ss_pred ccccccccccccc
Confidence 99999 5444443
No 395
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=62.26 E-value=69 Score=24.49 Aligned_cols=34 Identities=41% Similarity=0.522 Sum_probs=24.3
Q ss_pred CCCCeEEEeccCCCHHH---HHHhhcCCEEEEEecCC
Q 031506 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~---i~~a~~g~~v~~tD~~~ 102 (158)
++++++|=.|++.|+=. ..+++.|++|++++.++
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~ 42 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE 42 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence 46778888897755422 23456789999999875
No 396
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=62.22 E-value=27 Score=28.77 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=24.4
Q ss_pred CCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCCh
Q 031506 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR 103 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~ 103 (158)
..++.+||=.|+| .|...+.+++ +|+ +|+++|.++.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~ 227 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNED 227 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence 3456778778876 4555554444 577 6999998864
No 397
>PRK06138 short chain dehydrogenase; Provisional
Probab=61.54 E-value=68 Score=24.23 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=27.4
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~ 114 (158)
++++++|=.||..|+-.. .+++.|++|++++.+.. ..+....++
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~ 49 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAE--AAERVAAAI 49 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHH--HHHHHHHHH
Confidence 456788888986443332 24556889999998753 344333333
No 398
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=61.48 E-value=61 Score=24.91 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=24.9
Q ss_pred eEEEeccCCCHHH---HHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506 73 NVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 73 ~vLELG~GtGl~~---i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
++|=.|++.|+-. ..+++.|++|++++.++. .++.+...+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~ 45 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEE--NLEKALKELK 45 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHH
Confidence 4666777655322 234567899999998863 4444444443
No 399
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=61.19 E-value=30 Score=27.42 Aligned_cols=41 Identities=27% Similarity=0.371 Sum_probs=27.6
Q ss_pred CCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~ 111 (158)
..+.+||-.|+| +|...+.+++ .|.+|++++.++. ..+.++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~--~~~~~~ 206 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEE--KLELAK 206 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHH--HHHHHH
Confidence 356788888876 4666654444 6889999988853 555543
No 400
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.18 E-value=46 Score=28.83 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=37.9
Q ss_pred CCCeEEEeccC-CCHHH-HHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC-----C-CCcEEE-ecCC
Q 031506 70 SGANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS-----L-PPSHIC-SRVL 138 (158)
Q Consensus 70 ~~~~vLELG~G-tGl~~-i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d-----~-~fD~Ii-~d~i 138 (158)
.+++|+=+|.| +|... ..+.+.|++|++.|....++..+ .+...+..+++...+ . .+|+|+ +.-+
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~----~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I 79 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLA----ALRAELPDAEFVGGPFDPALLDGVDLVALSPGL 79 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHH----HHHhhcCCcEEEeCCCchhHhcCCCEEEECCCC
Confidence 45678888888 66442 25677899999999875322222 233332223332221 1 689999 6544
No 401
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=61.08 E-value=11 Score=31.13 Aligned_cols=54 Identities=9% Similarity=-0.026 Sum_probs=35.6
Q ss_pred CCCCCeEEEeccCCCHHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHcCCcceE
Q 031506 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL 123 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~a~~--g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~ 123 (158)
..++..++|.=-|.|.-+..+.+. +..|++.|.++. +++.++++++...-++.+
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~--a~~~a~~~l~~~~~r~~~ 73 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPE--ALERAKERLKKFDDRFIF 73 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HH--HHHHHHCCTCCCCTTEEE
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHH--HHHHHHHHHhhccceEEE
Confidence 345678999988988888866543 359999999964 999888877754333333
No 402
>PRK07454 short chain dehydrogenase; Provisional
Probab=61.05 E-value=69 Score=24.15 Aligned_cols=33 Identities=30% Similarity=0.252 Sum_probs=23.0
Q ss_pred CCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCCh
Q 031506 70 SGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNR 103 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~ 103 (158)
+.+++|=.|+ +|.+|.. +++.|.+|++++.++.
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~ 41 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQD 41 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3467888885 4555554 4456889999998863
No 403
>PRK08265 short chain dehydrogenase; Provisional
Probab=61.00 E-value=72 Score=24.63 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=24.0
Q ss_pred CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~ 102 (158)
.+++++|=.|+..| +|. .+++.|++|++++.++
T Consensus 4 ~~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 4 LAGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCH
Confidence 45778888887655 333 3456789999999985
No 404
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.85 E-value=27 Score=29.95 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=40.6
Q ss_pred CCCCeEEEeccC-CCHHHH--HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc--C--CCCcEEE-ecCC
Q 031506 69 FSGANVVELGAG-TSLPGL--VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT--S--LPPSHIC-SRVL 138 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i--~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~--d--~~fD~Ii-~d~i 138 (158)
+.+++|+=+|.| +|. ++ .+.+.|++|+++|.++.+ ........+...++.+..-.. + ..+|+|+ +.-+
T Consensus 12 ~~~~~i~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~~~-~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi 87 (458)
T PRK01710 12 IKNKKVAVVGIGVSNI-PLIKFLVKLGAKVTAFDKKSEE-ELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSM 87 (458)
T ss_pred hcCCeEEEEcccHHHH-HHHHHHHHCCCEEEEECCCCCc-cchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCC
Confidence 456789999999 554 44 677889999999987631 111222234545543321111 1 2699999 6433
No 405
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=60.82 E-value=36 Score=29.66 Aligned_cols=35 Identities=37% Similarity=0.640 Sum_probs=29.0
Q ss_pred CCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCCh
Q 031506 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~ 103 (158)
+.+++|+=+|=| ||+... .+.+.|+.|++.|..+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCC
Confidence 347889999988 887666 67788999999999986
No 406
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=60.73 E-value=56 Score=22.99 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=25.6
Q ss_pred HHhcccCCCCCeEEEeccCCCHHHH----HHhhcC-CEEEEEecCCh
Q 031506 62 VWQQRYRFSGANVVELGAGTSLPGL----VAAKVG-SNVTLTDDSNR 103 (158)
Q Consensus 62 l~~~~~~~~~~~vLELG~GtGl~~i----~~a~~g-~~v~~tD~~~~ 103 (158)
+.+.....++++++=+||| ..|. .+++.| .+|++.|.++.
T Consensus 10 ~~~~~~~~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~ 54 (155)
T cd01065 10 LEEAGIELKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLE 54 (155)
T ss_pred HHhhCCCCCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 3333334567899999986 3333 334454 68999999853
No 407
>PRK06114 short chain dehydrogenase; Provisional
Probab=60.62 E-value=74 Score=24.34 Aligned_cols=46 Identities=26% Similarity=0.318 Sum_probs=28.6
Q ss_pred CCCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
++++++|=.|++.| +|.. +++.|++|++++.+.. ..++.+.+.+..
T Consensus 6 ~~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~-~~~~~~~~~l~~ 55 (254)
T PRK06114 6 LDGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTD-DGLAETAEHIEA 55 (254)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcc-hHHHHHHHHHHh
Confidence 56788898886655 4443 3456889999998752 233434444443
No 408
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=60.61 E-value=46 Score=28.03 Aligned_cols=35 Identities=37% Similarity=0.626 Sum_probs=25.9
Q ss_pred CCCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCC
Q 031506 68 RFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~ 102 (158)
.+++.+||=+||| .|...+ .++..|. +++++|.+.
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4567799999999 444433 5667776 899999884
No 409
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=60.30 E-value=42 Score=25.54 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=29.9
Q ss_pred ccCCCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHH
Q 031506 66 RYRFSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMR 111 (158)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~ 111 (158)
...+++++|+=+|.| .+|. .+.+.|++|+++|.++. .++.+.
T Consensus 23 ~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~--~~~~~~ 68 (200)
T cd01075 23 TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEE--AVARAA 68 (200)
T ss_pred CCCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHH
Confidence 456788999999998 3444 34567899999999863 444443
No 410
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=60.25 E-value=61 Score=26.00 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=22.6
Q ss_pred CCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCC
Q 031506 70 SGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~ 102 (158)
.++++|=.|+..| +|. .+++.|++|++++.+.
T Consensus 5 ~~k~vlVTGas~g-IG~~~a~~L~~~G~~V~~~~r~~ 40 (322)
T PRK07453 5 AKGTVIITGASSG-VGLYAAKALAKRGWHVIMACRNL 40 (322)
T ss_pred CCCEEEEEcCCCh-HHHHHHHHHHHCCCEEEEEECCH
Confidence 4677888887644 444 3455789999998875
No 411
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.16 E-value=69 Score=25.61 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=25.9
Q ss_pred CCCCCeEEEeccCCCHHH---HHHhhcCCEEEEEecCC
Q 031506 68 RFSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~---i~~a~~g~~v~~tD~~~ 102 (158)
.++++++|=.|++.|+-. ..+++.|++|+++|...
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~ 46 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVAS 46 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCc
Confidence 467889999998876432 24566799999999864
No 412
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=59.82 E-value=21 Score=30.17 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=27.3
Q ss_pred CCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCCh
Q 031506 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR 103 (158)
Q Consensus 70 ~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~ 103 (158)
++.+|.=+||| .|+.++.-|+ .|+ .++++|+++.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~ 221 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE 221 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH
Confidence 57788888998 7888886555 466 8999999974
No 413
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=59.24 E-value=96 Score=25.19 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=69.0
Q ss_pred eEecc---hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEE
Q 031506 49 LFVWP---CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLM 125 (158)
Q Consensus 49 ~~vW~---~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (158)
.++|. ....|..|+..-.....+.+ |..=+|+=.++..+.+...++.++++.+. =...++.|.. -.-++++..
T Consensus 65 ~RL~~a~~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~--D~~~L~~~f~-~d~~vrv~~ 140 (279)
T COG2961 65 ARLWQAADLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPS--DAPLLRNNFA-GDRRVRVLR 140 (279)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCcc--HHHHHHHHhC-CCcceEEEe
Confidence 36674 45667777765333333333 77788888888877777779999999985 4556666666 334566766
Q ss_pred cCC------------CCcEEEecCCCCC-ccHHHHHHHHHHHh
Q 031506 126 TSL------------PPSHICSRVLQDQ-SSLRLIIIEVGIIL 155 (158)
Q Consensus 126 ~d~------------~fD~Ii~d~iy~~-~~~~~ll~tl~~ll 155 (158)
.|. +=-+|+-||+|.. ..+..+++++..-+
T Consensus 141 ~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~ 183 (279)
T COG2961 141 GDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAY 183 (279)
T ss_pred cCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHH
Confidence 654 2347778998885 45777888776544
No 414
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=59.15 E-value=32 Score=27.67 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=24.0
Q ss_pred CCCCCeEEEeccC-CCHHHHHHh-hcCCE-EEEEecCCh
Q 031506 68 RFSGANVVELGAG-TSLPGLVAA-KVGSN-VTLTDDSNR 103 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i~~a-~~g~~-v~~tD~~~~ 103 (158)
..++.+||=.|+| .|+.++.++ ..|++ |++++.++.
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~ 199 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE 199 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 3457788888875 455555344 35777 999988753
No 415
>PRK07326 short chain dehydrogenase; Provisional
Probab=59.06 E-value=74 Score=23.82 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=22.9
Q ss_pred CCCeEEEeccCCCHHHHHH----hhcCCEEEEEecCC
Q 031506 70 SGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSN 102 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~----a~~g~~v~~tD~~~ 102 (158)
.++++|=.|+ +|.+|..+ ++.|++|++++.++
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 4578888886 55555543 44688999999875
No 416
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=59.03 E-value=22 Score=24.48 Aligned_cols=16 Identities=6% Similarity=0.165 Sum_probs=10.2
Q ss_pred eEEEeccCCCHHHHHHh
Q 031506 73 NVVELGAGTSLPGLVAA 89 (158)
Q Consensus 73 ~vLELG~GtGl~~i~~a 89 (158)
+|| +-||+|..+-+++
T Consensus 3 kIL-lvCg~G~STSlla 18 (104)
T PRK09590 3 KAL-IICAAGMSSSMMA 18 (104)
T ss_pred EEE-EECCCchHHHHHH
Confidence 444 7788887655443
No 417
>PRK09291 short chain dehydrogenase; Provisional
Probab=58.85 E-value=78 Score=24.03 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=35.1
Q ss_pred CeEEEeccCCCHHHHH----HhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC------------CCcEEE
Q 031506 72 ANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL------------PPSHIC 134 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~------------~fD~Ii 134 (158)
+++|=.|++. .+|.. +++.|++|++++.++. -.+.++......+..+.+...|. +.|+|+
T Consensus 3 ~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAGS-GFGREVALRLARKGHNVIAGVQIAP--QVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 4677778754 44443 3456889999988753 34444433333333444443332 789888
No 418
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=58.63 E-value=99 Score=25.17 Aligned_cols=67 Identities=22% Similarity=0.213 Sum_probs=43.3
Q ss_pred EEEEeccCCCCCceEecch-HHHHHHHHHh---cccCCCCCeEEEeccCCCHHHHHHhh-cCC--EEEEEecCCh
Q 031506 36 SIAIIENMKEEYGLFVWPC-SVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSNR 103 (158)
Q Consensus 36 ~~~i~~~~~~~~g~~vW~~-~~~la~~l~~---~~~~~~~~~vLELG~GtGl~~i~~a~-~g~--~v~~tD~~~~ 103 (158)
+|.+... ...+-+++|.. --.||.-|+- +.+..++.+||=||+++|..---.+- -|. -|++++.++.
T Consensus 119 Risv~~~-~~kvEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~r 192 (317)
T KOG1596|consen 119 RISVENE-DGKVEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHR 192 (317)
T ss_pred EEEeecC-CCcEEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEeccc
Confidence 4555443 34788899965 3345554543 34456889999999999965433333 233 6999999874
No 419
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=58.34 E-value=83 Score=24.20 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCCCCeEEEeccCCCHH---HHHHhhcCCEEEEEecCChHHHHHHHHHHHHH-cCCcceEEEc
Q 031506 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRLLMT 126 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~---~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~~ 126 (158)
.++++++|=.|++.|+= +..+++.|++|+++..... +.++...+.++. .+.++.+...
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 66 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNV-EEANKIAEDLEQKYGIKAKAYPL 66 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHHhcCCceEEEEc
Confidence 35678899889876642 2345667899988865432 344443333332 2333444444
No 420
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=58.31 E-value=46 Score=28.30 Aligned_cols=71 Identities=13% Similarity=0.013 Sum_probs=43.2
Q ss_pred CCCeEEEeccCCCHHHHHHhhcCC------EEEEEecCChHHHHHHHHHHHHH-cCCcceE-------------EEcC--
Q 031506 70 SGANVVELGAGTSLPGLVAAKVGS------NVTLTDDSNRIEVLKNMRRVCEM-NKLNCRL-------------LMTS-- 127 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~g~------~v~~tD~~~~~~~l~~~~~n~~~-n~~~~~~-------------~~~d-- 127 (158)
++.+|||++|-.|-=++.+..... .|++-|.+.. =+..+++-+.. +.....+ ..++
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~--R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPK--RLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHH--HHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 678999999999977764444322 7999999974 33333333322 2111111 0111
Q ss_pred --CCCcEEEecCCCCCc
Q 031506 128 --LPPSHICSRVLQDQS 142 (158)
Q Consensus 128 --~~fD~Ii~d~iy~~~ 142 (158)
..||=|++|++...+
T Consensus 233 ~~~~fDrVLvDVPCS~D 249 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGD 249 (375)
T ss_pred hhhhcceeEEecccCCC
Confidence 179999999887654
No 421
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=58.15 E-value=94 Score=24.76 Aligned_cols=36 Identities=19% Similarity=0.428 Sum_probs=25.3
Q ss_pred CCCCCeEEEeccC-CCHHHH-HHhhcC-CEEEEEecCCh
Q 031506 68 RFSGANVVELGAG-TSLPGL-VAAKVG-SNVTLTDDSNR 103 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i-~~a~~g-~~v~~tD~~~~ 103 (158)
...++++|=+|+| .|...+ .++..| .+|++++.+..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~ 158 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVE 158 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 5678899999997 332222 345678 69999999853
No 422
>PRK07062 short chain dehydrogenase; Provisional
Probab=57.91 E-value=84 Score=24.11 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=29.6
Q ss_pred CCCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCChHHHHHHHHHHH
Q 031506 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~~~~l~~~~~n~ 114 (158)
..+++.+|=.|++.|+-.- .+++.|++|++++.++. -++.+...+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~ 52 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEE--RLASAEARL 52 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHH
Confidence 3567889999987664332 34567899999999863 444444333
No 423
>PLN02780 ketoreductase/ oxidoreductase
Probab=57.88 E-value=40 Score=27.40 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=31.8
Q ss_pred CCCeEEEeccCCCH---HHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 031506 70 SGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 70 ~~~~vLELG~GtGl---~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
.++.+|=.||..|+ ++..+++.|++|++++.++. -++.+.+.++.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~--~l~~~~~~l~~ 99 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPD--KLKDVSDSIQS 99 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHH--HHHHHHHHHHH
Confidence 47889999987764 33345677999999999864 56655555543
No 424
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=57.37 E-value=29 Score=28.62 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=25.4
Q ss_pred CCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCCh
Q 031506 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR 103 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~ 103 (158)
...+.+||=.||| .|..++.+|+ +|+ +|+++|.++.
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~ 221 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPA 221 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 3467788888886 5666664454 577 7999998753
No 425
>PRK07774 short chain dehydrogenase; Provisional
Probab=57.26 E-value=82 Score=23.79 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=27.2
Q ss_pred CCCCeEEEeccCCCHHHHHH----hhcCCEEEEEecCChHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVC 114 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~----a~~g~~v~~tD~~~~~~~l~~~~~n~ 114 (158)
.+++++|=.|+ +|.+|..+ ++.|++|++++.++. ..+.+...+
T Consensus 4 ~~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~ 50 (250)
T PRK07774 4 FDDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAE--GAERVAKQI 50 (250)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHH
Confidence 45678888885 45555543 456889999998753 344443333
No 426
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=57.25 E-value=39 Score=28.69 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=34.3
Q ss_pred EecchHHHHHHHHHhcccCCCCCeEEEeccC-CCHHHHHHhhcCCEEEEEecCCh
Q 031506 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~G-tGl~~i~~a~~g~~v~~tD~~~~ 103 (158)
+.|+.+.+.-+.|.- .++.+||=+.+| +-.+.. +.+.-++|+++|+|+.
T Consensus 19 ~~WEDp~vD~~aL~i----~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~ 68 (380)
T PF11899_consen 19 QCWEDPRVDMEALNI----GPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPA 68 (380)
T ss_pred cccCCcHHHHHHhCC----CCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHH
Confidence 679998888776643 346689888776 334443 3444469999999985
No 427
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=57.22 E-value=1.1e+02 Score=25.51 Aligned_cols=54 Identities=7% Similarity=-0.045 Sum_probs=39.9
Q ss_pred CCCCCeEEEeccCCCHHHHHH-hhcC--CEEEEEecCChHHHHHHHHHHHHHcCCcceE
Q 031506 68 RFSGANVVELGAGTSLPGLVA-AKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL 123 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~~-a~~g--~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~ 123 (158)
..++...+|.=-|.|..+-.+ .+++ .++++.|.++. +++.+++.+..++-++.+
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~--Ai~~a~~~l~~~~~r~~~ 77 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQ--AIAIAKERLKEFDGRVTL 77 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHH--HHHHHHHHhhccCCcEEE
Confidence 345578899888877777744 4554 47999999965 999999988876654443
No 428
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=57.17 E-value=17 Score=29.85 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=26.8
Q ss_pred HhcccCCCCCeEEEeccCCC-HHHH-HHhhcCCEEEEEecCC
Q 031506 63 WQQRYRFSGANVVELGAGTS-LPGL-VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 63 ~~~~~~~~~~~vLELG~GtG-l~~i-~~a~~g~~v~~tD~~~ 102 (158)
++.+....+++|+=+|+|.. +... .+++.|.+|+++|-.+
T Consensus 10 ~~~~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 51 (352)
T PRK12770 10 CKEKPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP 51 (352)
T ss_pred cccCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 33444556789999999943 3322 4566788899888653
No 429
>PLN02740 Alcohol dehydrogenase-like
Probab=57.04 E-value=29 Score=28.73 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=27.3
Q ss_pred CCCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHH
Q 031506 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~ 110 (158)
..++.+||=.||| .|..++.+|+ +|+ +|+++|.++. -++.+
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~--r~~~a 239 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE--KFEKG 239 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH--HHHHH
Confidence 4467889889876 5555554444 577 6999998753 44443
No 430
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=56.80 E-value=1.1e+02 Score=25.29 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=58.8
Q ss_pred cchHHHHHHHHH--hcccCCCCCeEEEeccCCCHHHH----HHhhcCCEEEEE---ecCChHHHHHHHHHHHHHcCCcce
Q 031506 52 WPCSVILAEYVW--QQRYRFSGANVVELGAGTSLPGL----VAAKVGSNVTLT---DDSNRIEVLKNMRRVCEMNKLNCR 122 (158)
Q Consensus 52 W~~~~~la~~l~--~~~~~~~~~~vLELG~GtGl~~i----~~a~~g~~v~~t---D~~~~~~~l~~~~~n~~~n~~~~~ 122 (158)
|.-...||+++. ++...+++.++.=+|-| ..++- .+++.|.+|... .+.+.++.++.++++++.++..+.
T Consensus 132 ~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDg-NNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~ 210 (310)
T COG0078 132 FHPCQALADLMTIKEHFGSLKGLKLAYVGDG-NNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKIT 210 (310)
T ss_pred cCcHHHHHHHHHHHHhcCcccCcEEEEEcCc-chHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEE
Confidence 345788899754 34445799999999999 43332 456788877665 344556789999999998876555
Q ss_pred EEEc-C---CCCcEEEecCCCC
Q 031506 123 LLMT-S---LPPSHICSRVLQD 140 (158)
Q Consensus 123 ~~~~-d---~~fD~Ii~d~iy~ 140 (158)
+..- + -..|+|..|+-..
T Consensus 211 ~t~d~~eAv~gADvvyTDvWvS 232 (310)
T COG0078 211 LTEDPEEAVKGADVVYTDVWVS 232 (310)
T ss_pred EecCHHHHhCCCCEEEecCccc
Confidence 4322 1 1677777666543
No 431
>PRK07024 short chain dehydrogenase; Provisional
Probab=56.66 E-value=58 Score=25.01 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=23.8
Q ss_pred CeEEEeccCCCHHHHH----HhhcCCEEEEEecCChHHHHHHHHH
Q 031506 72 ANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~~ 112 (158)
+++|=.|+. |.+|.. +++.|++|++++.++. .++.+.+
T Consensus 3 ~~vlItGas-~gIG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~ 44 (257)
T PRK07024 3 LKVFITGAS-SGIGQALAREYARQGATLGLVARRTD--ALQAFAA 44 (257)
T ss_pred CEEEEEcCC-cHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHH
Confidence 466667765 444443 4566889999998853 4444333
No 432
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=56.30 E-value=10 Score=25.91 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=21.0
Q ss_pred CCCHHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 031506 80 GTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (158)
Q Consensus 80 GtGl~~i~~a~-~g~~v~~tD~~~~~~~l~~~~ 111 (158)
|.|+.++.+++ .|++|+++|.++. -++.++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~--k~~~~~ 31 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEE--KLELAK 31 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHH--HHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHH--HHHHHH
Confidence 45778885555 6889999999864 444443
No 433
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.11 E-value=17 Score=30.25 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=39.1
Q ss_pred CCCCceEecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcC--CEEEEEecC
Q 031506 44 KEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDS 101 (158)
Q Consensus 44 ~~~~g~~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g--~~v~~tD~~ 101 (158)
..++..|+|.--..+-.|+.+ .-..+.|+.||||.=.+..-+...+ ..+...|++
T Consensus 64 nRGy~~R~~aI~~~v~~Fl~~---~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievD 120 (335)
T KOG2918|consen 64 NRGYWARTMAIRHAVRAFLEQ---TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVD 120 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHh---cCCceEEEEcCCCccchhhhhhccCCCCcceEEEec
Confidence 457888888888888888877 2245689999999888887665555 344444444
No 434
>PRK06153 hypothetical protein; Provisional
Probab=55.99 E-value=14 Score=31.52 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=27.0
Q ss_pred CCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCC
Q 031506 69 FSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~ 102 (158)
+++.+|+=+||| +|..-+ .+++.|. +++++|.+.
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 467789999999 675444 7888887 999999874
No 435
>PLN00203 glutamyl-tRNA reductase
Probab=54.89 E-value=70 Score=28.35 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=36.8
Q ss_pred CCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC------CCCcEEE-e
Q 031506 69 FSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS------LPPSHIC-S 135 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d------~~fD~Ii-~ 135 (158)
+.+++|+=+|+| .|...+ .+...|. +|++++.+.. -.+.+..... +..+.+...+ ...|+|+ +
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~e--ra~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEE--RVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHH--HHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEc
Confidence 568899999997 444433 3445675 7999998853 3443333221 2222222221 2789999 6
No 436
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=54.32 E-value=93 Score=26.96 Aligned_cols=84 Identities=7% Similarity=-0.004 Sum_probs=50.5
Q ss_pred CeEEEec-cCCCHHHH------HHhhcCCEEEEEecCCh-HHHHHHHHHHHHHcCCcceEEE--cC--------------
Q 031506 72 ANVVELG-AGTSLPGL------VAAKVGSNVTLTDDSNR-IEVLKNMRRVCEMNKLNCRLLM--TS-------------- 127 (158)
Q Consensus 72 ~~vLELG-~GtGl~~i------~~a~~g~~v~~tD~~~~-~~~l~~~~~n~~~n~~~~~~~~--~d-------------- 127 (158)
..|+=+| -|+|=.+. .+.+.|.+|.+++.+.. +.+.+.++......++++.... .|
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~ 180 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK 180 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh
Confidence 3456666 45774333 22344777777776652 3467777777776665433211 12
Q ss_pred CCCcEEEecCCCCCccHHHHHHHHHHHh
Q 031506 128 LPPSHICSRVLQDQSSLRLIIIEVGIIL 155 (158)
Q Consensus 128 ~~fD~Ii~d~iy~~~~~~~ll~tl~~ll 155 (158)
..||+|+.|..-....-+.+++.+..+.
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~ 208 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVA 208 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHh
Confidence 2699999888766666666777766553
No 437
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.26 E-value=48 Score=28.18 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=36.9
Q ss_pred eEEEeccC-CCHHHH-HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceE-EEcC--------CCCcEEE-ecCC
Q 031506 73 NVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRL-LMTS--------LPPSHIC-SRVL 138 (158)
Q Consensus 73 ~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~-~~~d--------~~fD~Ii-~d~i 138 (158)
+|+=+|.| +|..+. .+++.|++|++.|..+.+. .......+...++.+.. ...+ ..+|+|+ +.-+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~-~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi 78 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE-LLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGI 78 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh-hHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCC
Confidence 46667777 665443 5677899999999887422 22222334444443321 0111 2689999 5554
No 438
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=54.17 E-value=30 Score=28.84 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=33.4
Q ss_pred EecchHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCCh
Q 031506 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 50 ~vW~~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~ 103 (158)
++|+.+.+=-+.+.. -.+.+|.-+|+|-..+--.+++.-++|.++|+++.
T Consensus 47 qiwEDp~Vdmeam~~----g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~a 96 (414)
T COG5379 47 QIWEDPSVDMEAMQL----GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPA 96 (414)
T ss_pred cccCCccccHHHHhc----CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHH
Confidence 466655444443332 24678999999955444455666779999999986
No 439
>PRK08278 short chain dehydrogenase; Provisional
Probab=53.75 E-value=1e+02 Score=23.95 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=23.6
Q ss_pred CCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~ 102 (158)
.+++++|=.||+.|+-.- .+++.|++|++++.+.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTA 40 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 356788988886554222 3456788999999864
No 440
>PRK12939 short chain dehydrogenase; Provisional
Probab=53.61 E-value=94 Score=23.36 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=27.2
Q ss_pred CCCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCChHHHHHHHHHHHH
Q 031506 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~~n~~ 115 (158)
.+++++|=.|++ |.+|.. +++.|++|++++.++. -++.....++
T Consensus 5 ~~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~ 52 (250)
T PRK12939 5 LAGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAA--EARELAAALE 52 (250)
T ss_pred CCCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHH
Confidence 356788877764 555554 3456889999987753 4444444443
No 441
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=53.50 E-value=17 Score=30.51 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=30.4
Q ss_pred eEEEeccC-CC--HHHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 031506 73 NVVELGAG-TS--LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (158)
Q Consensus 73 ~vLELG~G-tG--l~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n 113 (158)
+|+=+|+| -| .++-++++.|.+|+++|..+. .++.++++
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~--~v~aL~~q 43 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQE--LIDALNKR 43 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCCCeEEEEECCHH--HHHHHhcC
Confidence 58889998 34 567788888999999998753 77776655
No 442
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=53.36 E-value=96 Score=23.42 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=31.9
Q ss_pred CCCeEEEeccCCCHHHHHHh----hcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 70 SGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a----~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
+++++|=.|+ +|.+|..++ +.|++|++++.++. ..+.....+...+.++.+...
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDE--AAAAAAEALQKAGGKAIGVAM 60 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEc
Confidence 4567786665 466666544 45889999998863 444444444444444444443
No 443
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=52.26 E-value=35 Score=29.31 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=27.3
Q ss_pred CCCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCCh
Q 031506 68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~ 103 (158)
.+.+++|+=+|+| .|.... .+...|++|+++|.++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 4689999999999 565554 33446889999999873
No 444
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=52.06 E-value=34 Score=28.45 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=30.7
Q ss_pred EEEeccCCCHHHHH----HhhcC-C-EEEEEecCChHHHHHHHHHHHHHcCCcceEEEcCC-----------CCcEEE-e
Q 031506 74 VVELGAGTSLPGLV----AAKVG-S-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTSL-----------PPSHIC-S 135 (158)
Q Consensus 74 vLELG~GtGl~~i~----~a~~g-~-~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d~-----------~fD~Ii-~ 135 (158)
|+=||| |.+|-. +++.+ . +|++.|.+.. -++.....+ ++.++.....|. ..|+|| +
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~--~~~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPE--KAERLAEKL--LGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHH--HHHHHHT----TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHH--HHHHHHhhc--cccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 455788 444443 33344 3 8999999963 333332222 444555555543 789999 5
Q ss_pred cCCC
Q 031506 136 RVLQ 139 (158)
Q Consensus 136 d~iy 139 (158)
=+.|
T Consensus 75 ~gp~ 78 (386)
T PF03435_consen 75 AGPF 78 (386)
T ss_dssp SSGG
T ss_pred Cccc
Confidence 5555
No 445
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=51.89 E-value=94 Score=27.11 Aligned_cols=82 Identities=11% Similarity=0.025 Sum_probs=51.6
Q ss_pred CeEEEec-cCCCH------HHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHcCCcceEEEc----------------
Q 031506 72 ANVVELG-AGTSL------PGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---------------- 126 (158)
Q Consensus 72 ~~vLELG-~GtGl------~~i~~a~~g~--~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---------------- 126 (158)
..|+=+| -|+|= ++..+.++|. -++++|..- |.++++++......++.+.....
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R-pAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR-PAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC-hHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH
Confidence 3455555 24442 2333444565 477778776 57899999988877654332211
Q ss_pred CCCCcEEEecCCCCCccHHHHHHHHHHH
Q 031506 127 SLPPSHICSRVLQDQSSLRLIIIEVGII 154 (158)
Q Consensus 127 d~~fD~Ii~d~iy~~~~~~~ll~tl~~l 154 (158)
...||+||.|.--....-++|++.+..+
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~I 207 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEI 207 (451)
T ss_pred HcCCCEEEEeCCCcccccHHHHHHHHHH
Confidence 1278999988877666667777776654
No 446
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=51.88 E-value=31 Score=29.01 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=25.5
Q ss_pred CCCCeEEEeccC-CCHHHHH-HhhcCCEEEEEecCCh
Q 031506 69 FSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSNR 103 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i~-~a~~g~~v~~tD~~~~ 103 (158)
.++.+|+=+|+| .|...+. +...|++|+++|.++.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~ 201 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINID 201 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 356779989888 5666553 4456889999999853
No 447
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.86 E-value=25 Score=30.41 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=28.4
Q ss_pred CCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCC
Q 031506 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~ 102 (158)
+.+++|+=+|-| +|.... .+.+.|++|+++|..+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 357889999999 887777 6778899999999875
No 448
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=51.61 E-value=22 Score=26.15 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=24.5
Q ss_pred CCCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCC
Q 031506 68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~ 102 (158)
.+++.+|+=+|+| .|.-+. ++..+|++|+..|..+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3466789999988 666666 4556899999999985
No 449
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.37 E-value=1e+02 Score=23.15 Aligned_cols=54 Identities=26% Similarity=0.252 Sum_probs=31.5
Q ss_pred CCCeEEEeccCCCHHHHHH----hhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 70 SGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~----a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
+++++|=.|+ +|.+|..+ ++.|++|++++.++. -.+.....+...+.++.+...
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 63 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEE--NLKAVAEEVEAYGVKVVIATA 63 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhCCeEEEEEC
Confidence 4567888885 56666643 456889999998853 334333333333333444444
No 450
>PRK05855 short chain dehydrogenase; Validated
Probab=51.34 E-value=1.1e+02 Score=26.17 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=32.8
Q ss_pred CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS 127 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d 127 (158)
.++.++|=.|+..| +|. .+++.|++|++++.+.. -++.+...+...+..+.+...|
T Consensus 313 ~~~~~~lv~G~s~g-iG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D 372 (582)
T PRK05855 313 FSGKLVVVTGAGSG-IGRETALAFAREGAEVVASDIDEA--AAERTAELIRAAGAVAHAYRVD 372 (582)
T ss_pred CCCCEEEEECCcCH-HHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEcC
Confidence 35567887887544 444 34567889999999853 4444444444434344444443
No 451
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=51.28 E-value=12 Score=32.58 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=19.1
Q ss_pred CCCHHHH--HHhhcCCEEEEEecCCh
Q 031506 80 GTSLPGL--VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 80 GtGl~~i--~~a~~g~~v~~tD~~~~ 103 (158)
|+|-.|+ .+..+|++|.+.|+++.
T Consensus 17 G~GMsglA~iL~~~G~~VsGSD~~~~ 42 (459)
T COG0773 17 GIGMSGLAEILLNLGYKVSGSDLAES 42 (459)
T ss_pred cccHHHHHHHHHhCCCceECcccccc
Confidence 5555554 77889999999999985
No 452
>PLN02253 xanthoxin dehydrogenase
Probab=50.52 E-value=1.2e+02 Score=23.56 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=24.0
Q ss_pred CCCCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCC
Q 031506 68 RFSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~ 102 (158)
...++++|=.|+..| +|.. +++.|++|++++.++
T Consensus 15 ~l~~k~~lItGas~g-IG~~la~~l~~~G~~v~~~~~~~ 52 (280)
T PLN02253 15 RLLGKVALVTGGATG-IGESIVRLFHKHGAKVCIVDLQD 52 (280)
T ss_pred ccCCCEEEEECCCch-HHHHHHHHHHHcCCEEEEEeCCH
Confidence 346778898886544 4443 455789999999875
No 453
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=50.51 E-value=15 Score=31.32 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=31.3
Q ss_pred cCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc---C--CCCcEEE-ecCC
Q 031506 79 AGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT---S--LPPSHIC-SRVL 138 (158)
Q Consensus 79 ~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~---d--~~fD~Ii-~d~i 138 (158)
+|...++..+.+.|+.|+++|..+.++..+ .++..++.... +. . ..+|+|+ +.-+
T Consensus 10 ~gm~~la~~l~~~G~~V~~~D~~~~~~~~~----~l~~~gi~~~~-~~~~~~~~~~~d~vV~SpgI 70 (448)
T TIGR01081 10 TFMGGLAMIAKQLGHEVTGSDANVYPPMST----QLEAQGIEIIE-GFDAAQLEPKPDLVVIGNAM 70 (448)
T ss_pred HhHHHHHHHHHhCCCEEEEECCCCCcHHHH----HHHHCCCEEeC-CCCHHHCCCCCCEEEECCCC
Confidence 334445557888999999999876422222 23333433221 11 1 1589999 6655
No 454
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=50.40 E-value=1.3e+02 Score=24.22 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=40.9
Q ss_pred CCCCeEEEeccCCCHH---HHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc-CCcceEEEcC
Q 031506 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRLLMTS 127 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~---~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~~d 127 (158)
..++++|==|+-+|+= +..+|++|++++++-.+.. -++.+++.+... +..+.+...|
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~--kL~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARRED--KLEALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHH--HHHHHHHHHHHhhCceEEEEECc
Confidence 3566788888877753 3356778999999999964 777777777654 4666666665
No 455
>PRK08328 hypothetical protein; Provisional
Probab=50.38 E-value=16 Score=28.59 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=25.4
Q ss_pred CCCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCC
Q 031506 68 RFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~ 102 (158)
.+++.+|+=+||| .|..-+ .+++.|. +++++|.+.
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3467789999999 453333 6677786 899999764
No 456
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.19 E-value=52 Score=27.99 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=23.0
Q ss_pred CeEEEeccC-CCHHHHH-Hhhc-C-CEEEEEecCCh
Q 031506 72 ANVVELGAG-TSLPGLV-AAKV-G-SNVTLTDDSNR 103 (158)
Q Consensus 72 ~~vLELG~G-tGl~~i~-~a~~-g-~~v~~tD~~~~ 103 (158)
++|+=+|.| +|..++. +.+. | ++|++.|..+.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~ 43 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET 43 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 677888877 7877773 3333 3 78999998764
No 457
>PRK12743 oxidoreductase; Provisional
Probab=50.19 E-value=1.1e+02 Score=23.32 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=30.1
Q ss_pred CCeEEEeccCCCHHHHHH----hhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 71 GANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 71 ~~~vLELG~GtGl~~i~~----a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
++++|=.|+..| +|..+ ++.|++|+++..... +..+.+...+..++..+.....
T Consensus 2 ~k~vlItGas~g-iG~~~a~~l~~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 59 (256)
T PRK12743 2 AQVAIVTASDSG-IGKACALLLAQQGFDIGITWHSDE-EGAKETAEEVRSHGVRAEIRQL 59 (256)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHhcCCceEEEEc
Confidence 457788887544 55543 456889988865442 2344444444444444444433
No 458
>PRK11524 putative methyltransferase; Provisional
Probab=49.93 E-value=20 Score=28.80 Aligned_cols=31 Identities=19% Similarity=-0.052 Sum_probs=21.0
Q ss_pred CCCCcEEEecCCCCCc-----------------cHHHHHHHHHHHhcC
Q 031506 127 SLPPSHICSRVLQDQS-----------------SLRLIIIEVGIILLS 157 (158)
Q Consensus 127 d~~fD~Ii~d~iy~~~-----------------~~~~ll~tl~~ll~~ 157 (158)
+.+||+|++||+|... -+..++..+..+|+.
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~ 72 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKK 72 (284)
T ss_pred cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCC
Confidence 3579999999999641 124566666666654
No 459
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=49.91 E-value=25 Score=30.20 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEeccC-CCHHH-HHHhhcCCEEEEEecCCh
Q 031506 74 VVELGAG-TSLPG-LVAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 74 vLELG~G-tGl~~-i~~a~~g~~v~~tD~~~~ 103 (158)
|-=+|+| .|++. ..+|..|.+|+++|+++.
T Consensus 3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred eEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3345555 44432 356888999999999974
No 460
>PRK07201 short chain dehydrogenase; Provisional
Probab=49.91 E-value=1.1e+02 Score=27.16 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=32.4
Q ss_pred CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
++++++|=.|++.| +|. .+++.|++|++++.++. .++.+...+...+.++.+...
T Consensus 369 ~~~k~vlItGas~g-iG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 427 (657)
T PRK07201 369 LVGKVVLITGASSG-IGRATAIKVAEAGATVFLVARNGE--ALDELVAEIRAKGGTAHAYTC 427 (657)
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEe
Confidence 45678888887654 444 34567899999998853 454444444333333433333
No 461
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=49.86 E-value=23 Score=30.20 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCCHH--HHHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---C-CCcEEE-ecCCC
Q 031506 80 GTSLP--GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---L-PPSHIC-SRVLQ 139 (158)
Q Consensus 80 GtGl~--~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---~-~fD~Ii-~d~iy 139 (158)
|+|.. +..++++|++|+++|....+ +.+ .++..++.... +.+ . .+|+|+ +.-+-
T Consensus 9 gsGm~~la~~L~~~G~~v~~~D~~~~~-~~~----~l~~~gi~~~~-g~~~~~~~~~d~vV~spgi~ 69 (448)
T TIGR01082 9 GIGMSGIAEILLNRGYQVSGSDIAENA-TTK----RLEALGIPIYI-GHSAENLDDADVVVVSAAIK 69 (448)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCcch-HHH----HHHHCcCEEeC-CCCHHHCCCCCEEEECCCCC
Confidence 47764 55778899999999987642 222 23333433211 121 1 599999 76553
No 462
>PRK05717 oxidoreductase; Validated
Probab=49.82 E-value=1.1e+02 Score=23.24 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=25.1
Q ss_pred cCCCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCC
Q 031506 67 YRFSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~ 102 (158)
..++++++|=.|++.| +|. .+++.|++|+++|.+.
T Consensus 6 ~~~~~k~vlItG~sg~-IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 6 PGHNGRVALVTGAARG-IGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred cccCCCEEEEeCCcch-HHHHHHHHHHHcCCEEEEEcCCH
Confidence 4567888998887644 444 3455688999999875
No 463
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=49.80 E-value=91 Score=26.93 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=31.8
Q ss_pred chHHHHHHHHHhcccCCCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCC
Q 031506 53 PCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 53 ~~~~~la~~l~~~~~~~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~ 102 (158)
-++.-+++-+. ..++++++|=+|+| +|-+.. .++..|. .|+...-..
T Consensus 163 saAv~lA~~~~---~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~ 212 (414)
T COG0373 163 SAAVELAKRIF---GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTL 212 (414)
T ss_pred HHHHHHHHHHh---cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence 34444444333 24688999999999 776555 6677774 888887763
No 464
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=49.37 E-value=38 Score=25.77 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=23.6
Q ss_pred CCCCCeEEEeccCC-CH-HHHHHhhcCC-EEEEEecCC
Q 031506 68 RFSGANVVELGAGT-SL-PGLVAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~Gt-Gl-~~i~~a~~g~-~v~~tD~~~ 102 (158)
.++..+||=+|||. |. +...++..|. +++++|.+.
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 34567899999983 22 2224566676 899999874
No 465
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=49.26 E-value=1.1e+02 Score=23.02 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~ 102 (158)
++++++|=.|++.|+ |. .+++.|++|++++.++
T Consensus 3 ~~~k~vlItGas~gI-G~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGL-GQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCch
Confidence 567889999987553 43 3455689999999764
No 466
>PRK06181 short chain dehydrogenase; Provisional
Probab=49.17 E-value=1.2e+02 Score=23.20 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=28.9
Q ss_pred CeEEEeccCCCHHHHH----HhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEc
Q 031506 72 ANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMT 126 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~ 126 (158)
+++|=.|+. |.+|.. +++.|++|++++.++. -.+.+...+...+....+...
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 57 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNET--RLASLAQELADHGGEALVVPT 57 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEc
Confidence 356666654 445553 3456889999998853 344444444433333434433
No 467
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=48.64 E-value=61 Score=24.24 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=26.0
Q ss_pred HHHHHHHHhc-ccCCCCCeEEEeccC-CCH-HHHHHhhcCCEEEEEecCCh
Q 031506 56 VILAEYVWQQ-RYRFSGANVVELGAG-TSL-PGLVAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 56 ~~la~~l~~~-~~~~~~~~vLELG~G-tGl-~~i~~a~~g~~v~~tD~~~~ 103 (158)
+-+.+-+.+. ...+.+++++=+|-| +|- ++..+...|++|+++|.+|.
T Consensus 7 ~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 7 QSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp HHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred hhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 3444444432 346689999988877 332 22244557899999999973
No 468
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=48.58 E-value=21 Score=31.55 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=25.7
Q ss_pred CCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecC
Q 031506 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDS 101 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~ 101 (158)
..+++|+=+|+| .|+.+. .+++.|++|+++|-.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 367899999999 566655 456678999999954
No 469
>PRK08226 short chain dehydrogenase; Provisional
Probab=48.19 E-value=1.2e+02 Score=23.11 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=23.2
Q ss_pred CCCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~ 102 (158)
++++++|=.|+..| +|.. +++.|++|++++.+.
T Consensus 4 ~~~~~~lItG~s~g-iG~~la~~l~~~G~~Vv~~~r~~ 40 (263)
T PRK08226 4 LTGKTALITGALQG-IGEGIARVFARHGANLILLDISP 40 (263)
T ss_pred CCCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEecCCH
Confidence 45678888887644 4443 345688999999875
No 470
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=48.19 E-value=1.2e+02 Score=23.00 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=31.5
Q ss_pred CCCCeEEEeccCCCHHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC
Q 031506 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS 127 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i----~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d 127 (158)
.+++++|=.|+. |.+|. .+++.|++|++++.++. ..+.+.+.+...+....+...|
T Consensus 5 ~~~~~vlItGas-g~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 5 LNGKTAVVTGAA-SGIGKEIALELARAGAAVAIADLNQD--GANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHHHHhcCceEEEEECC
Confidence 456788877765 44444 34567889999999863 3444333333333333333333
No 471
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=48.04 E-value=16 Score=30.26 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=22.6
Q ss_pred CCCeEEEeccCCCHHHHHHhhc------------C------CEEEEEecCCh
Q 031506 70 SGANVVELGAGTSLPGLVAAKV------------G------SNVTLTDDSNR 103 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~~a~~------------g------~~v~~tD~~~~ 103 (158)
+.-+|+|+||.+|-.++.+... + .+|+..|+...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~N 67 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSN 67 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCc
Confidence 4458999999999888864221 2 28999999874
No 472
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=47.79 E-value=1.1e+02 Score=22.60 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=23.9
Q ss_pred CeEEEeccCCCHHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHc
Q 031506 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (158)
Q Consensus 72 ~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n 117 (158)
+.|+.||||.=.-+.-+......+...|++. |++++.=++-+...
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~ 124 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPES 124 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHT
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhC
Confidence 4899999997777776655432444444443 45666544444433
No 473
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=47.74 E-value=36 Score=29.06 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=33.2
Q ss_pred CCceEecchHHHHHHHHHh-cccCCCCCeEEEeccC-CCH-HHHHHhhcCCEEEEEecCCh
Q 031506 46 EYGLFVWPCSVILAEYVWQ-QRYRFSGANVVELGAG-TSL-PGLVAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 46 ~~g~~vW~~~~~la~~l~~-~~~~~~~~~vLELG~G-tGl-~~i~~a~~g~~v~~tD~~~~ 103 (158)
++|...|++ |.+ ......|+.++=.|-| +|- .+..+...|++|++|+.+|-
T Consensus 190 GtgqS~~Dg-------I~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI 243 (420)
T COG0499 190 GTGQSLLDG-------ILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPI 243 (420)
T ss_pred ccchhHHHH-------HHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCch
Confidence 455556665 333 2234588999888877 443 23344557899999999984
No 474
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=47.67 E-value=62 Score=26.52 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=24.0
Q ss_pred CCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCCh
Q 031506 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR 103 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~ 103 (158)
.++.+||=.|+| .|+.++.+++ +|+ +|+++|.++.
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~ 222 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPD 222 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 467788888875 4555554443 577 7999998863
No 475
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=47.62 E-value=17 Score=28.63 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=25.9
Q ss_pred CCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCC
Q 031506 69 FSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~ 102 (158)
+++.+|+=+||| .|.... .+++.|. +++++|.+.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 456789999998 554444 6777887 999999875
No 476
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=47.52 E-value=1.4e+02 Score=23.98 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=21.6
Q ss_pred CCeEEEeccCCCHH---HHHHhhcC-CEEEEEecCC
Q 031506 71 GANVVELGAGTSLP---GLVAAKVG-SNVTLTDDSN 102 (158)
Q Consensus 71 ~~~vLELG~GtGl~---~i~~a~~g-~~v~~tD~~~ 102 (158)
++++|=.|+..|+- +..+++.| ++|++++.++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~ 38 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDF 38 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 45677778776542 22345678 8999998775
No 477
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=47.35 E-value=27 Score=32.56 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=32.2
Q ss_pred CCCCeEEEeccCCCHHHHHHhhcCCEEEEEecCCh
Q 031506 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~~a~~g~~v~~tD~~~~ 103 (158)
+.+..++|=-+|-|.+.+.+.++|.+|+++|++|.
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPv 123 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPV 123 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCceeEEEecccH
Confidence 46678999999999999999999999999999985
No 478
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=47.30 E-value=45 Score=25.55 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=26.1
Q ss_pred CCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCCh
Q 031506 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~ 103 (158)
+++++||=+|.| .|.--+ .+.+.|++|++++-+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 578899999998 444433 56678999999987654
No 479
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=47.10 E-value=37 Score=31.16 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=28.9
Q ss_pred CeEEEeccCCCH--HHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 031506 72 ANVVELGAGTSL--PGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (158)
Q Consensus 72 ~~vLELG~GtGl--~~i~~a~~g~~v~~tD~~~~~~~l~~~~~n 113 (158)
++|.=+|+|+=- ++..++..|.+|++.|.++. .++..+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~--~l~~~~~~ 355 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK--ALDLGMTE 355 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH--HHHHHHHH
Confidence 478889999633 33467788999999999964 66654443
No 480
>PRK06197 short chain dehydrogenase; Provisional
Probab=46.77 E-value=1.4e+02 Score=23.54 Aligned_cols=34 Identities=32% Similarity=0.284 Sum_probs=23.7
Q ss_pred CCCCCeEEEeccCCCHHHHH----HhhcCCEEEEEecCC
Q 031506 68 RFSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i~----~a~~g~~v~~tD~~~ 102 (158)
..++++||=.|+..| +|.. +++.|++|++++.+.
T Consensus 13 ~~~~k~vlItGas~g-IG~~~a~~l~~~G~~vi~~~r~~ 50 (306)
T PRK06197 13 DQSGRVAVVTGANTG-LGYETAAALAAKGAHVVLAVRNL 50 (306)
T ss_pred cCCCCEEEEcCCCCc-HHHHHHHHHHHCCCEEEEEeCCH
Confidence 456788888886544 4443 455788999998875
No 481
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=46.76 E-value=76 Score=25.32 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=23.5
Q ss_pred CCCeEEEeccCC-CHHHHHHh-hcCC-EEEEEecCCh
Q 031506 70 SGANVVELGAGT-SLPGLVAA-KVGS-NVTLTDDSNR 103 (158)
Q Consensus 70 ~~~~vLELG~Gt-Gl~~i~~a-~~g~-~v~~tD~~~~ 103 (158)
++.+||-.|||. |...+.++ ..|. +|++++.++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~ 201 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADA 201 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence 778888888762 44554333 4687 8999988753
No 482
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=46.59 E-value=60 Score=21.67 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=6.4
Q ss_pred eccCCCHHHH
Q 031506 77 LGAGTSLPGL 86 (158)
Q Consensus 77 LG~GtGl~~i 86 (158)
+-||+|..+-
T Consensus 4 ~~Cg~G~sTS 13 (96)
T cd05564 4 LVCSAGMSTS 13 (96)
T ss_pred EEcCCCchHH
Confidence 4588887543
No 483
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=46.56 E-value=71 Score=25.95 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=23.8
Q ss_pred CCCCeEEEeccC-CCHHHHHHhh-cCCEEEEEecC
Q 031506 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDS 101 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i~~a~-~g~~v~~tD~~ 101 (158)
.++.+||=.||| .|.+++.+++ .|++|++++.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 367789888887 5666664444 57799999873
No 484
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=46.46 E-value=1.3e+02 Score=25.58 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=45.4
Q ss_pred CEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC--------CCCcEEE-ecCCCCCccHHHHHHHHHHHhc
Q 031506 93 SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS--------LPPSHIC-SRVLQDQSSLRLIIIEVGIILL 156 (158)
Q Consensus 93 ~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d--------~~fD~Ii-~d~iy~~~~~~~ll~tl~~ll~ 156 (158)
.+|+++|+-.. .++-+++..-+.++.+...+ ..+|-|+ |+=+-+++..+..+.+++.++-
T Consensus 180 ~~Vv~iD~GvK----~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~ 248 (368)
T COG0505 180 KHVVVIDFGVK----RNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLG 248 (368)
T ss_pred cEEEEEEcCcc----HHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhc
Confidence 48899998753 35555555566666655442 3899999 9999999999999999998874
No 485
>PLN02494 adenosylhomocysteinase
Probab=45.95 E-value=33 Score=30.14 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=26.4
Q ss_pred CCCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCCh
Q 031506 68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~ 103 (158)
.+.+++|+=+|+| .|.... .+...|++|+++|.++.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4689999999999 454333 33446889999999873
No 486
>PRK09072 short chain dehydrogenase; Provisional
Probab=45.91 E-value=1.3e+02 Score=23.07 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCCh
Q 031506 70 SGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~~ 103 (158)
+++++|=.|++.|+-.- .+++.|++|++++.++.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~ 40 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAE 40 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence 46678888877554322 34567999999998853
No 487
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=45.71 E-value=1.2e+02 Score=22.42 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=25.2
Q ss_pred ccCCCCCeEEEecc-C-CCH-HHHHHhhcCCEEEEEecCC
Q 031506 66 RYRFSGANVVELGA-G-TSL-PGLVAAKVGSNVTLTDDSN 102 (158)
Q Consensus 66 ~~~~~~~~vLELG~-G-tGl-~~i~~a~~g~~v~~tD~~~ 102 (158)
...+++++++=+|+ | .|. ....+++.|++|++++.+.
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 34567889999986 4 342 2234566788999998764
No 488
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=45.61 E-value=39 Score=30.91 Aligned_cols=49 Identities=18% Similarity=0.041 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEeccCCCHHHHHHhhc---CCEEEEEecCC
Q 031506 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSN 102 (158)
Q Consensus 54 ~~~~la~~l~~~~~~~~~~~vLELG~GtGl~~i~~a~~---g~~v~~tD~~~ 102 (158)
++.-|...=.++....++..||||||-.|.--.++++. |.-|+++|+-+
T Consensus 28 saFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 28 SAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 33444332223333446778999999999887777664 45899999987
No 489
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=45.42 E-value=48 Score=30.75 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=37.2
Q ss_pred eEEEeccC-CCHHH--HHHhhcCCEEEEEecCChHHHHHHHHHHHHHcCCcceEEEcC---C-CCcEEE-ecCCC
Q 031506 73 NVVELGAG-TSLPG--LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRLLMTS---L-PPSHIC-SRVLQ 139 (158)
Q Consensus 73 ~vLELG~G-tGl~~--i~~a~~g~~v~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~~d---~-~fD~Ii-~d~iy 139 (158)
+|+=+|.| +|..+ .++.++|++|+++|..+.+ ..+ .++..++.+. .+.+ . .+|+|+ +.-+-
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~-~~~----~L~~~gi~~~-~g~~~~~~~~~d~vV~SpgI~ 74 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGK-TVE----KLKAKGARFF-LGHQEEHVPEDAVVVYSSSIS 74 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCCh-HHH----HHHHCCCEEe-CCCCHHHcCCCCEEEECCCcC
Confidence 45666665 78766 3678899999999998642 222 2444444321 1111 1 689999 76654
No 490
>PRK07904 short chain dehydrogenase; Provisional
Probab=45.13 E-value=1.4e+02 Score=23.01 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=27.4
Q ss_pred CCCeEEEeccCCCHHHHH---HhhcC-CEEEEEecCChHHHHHHHHHHHHH
Q 031506 70 SGANVVELGAGTSLPGLV---AAKVG-SNVTLTDDSNRIEVLKNMRRVCEM 116 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i~---~a~~g-~~v~~tD~~~~~~~l~~~~~n~~~ 116 (158)
.+++||=.||..|+-.-+ +++.| ++|++++.++. ..++.+.+.+..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~-~~~~~~~~~l~~ 56 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDD-PRRDAAVAQMKA 56 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcc-hhHHHHHHHHHh
Confidence 456899999865543322 24454 79999998864 124444344443
No 491
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=45.13 E-value=1.5e+02 Score=23.36 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCCCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCC
Q 031506 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~ 102 (158)
..++++++=+|+| |.-.. .+++.|.+|++++.++
T Consensus 114 ~~~~k~vliiGaG-g~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 114 LRPNQRVLIIGAG-GAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CccCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3457789999998 32221 3445678999999875
No 492
>PRK06198 short chain dehydrogenase; Provisional
Probab=44.99 E-value=1.4e+02 Score=22.74 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=23.0
Q ss_pred CCCCeEEEeccCCCHHHHH----HhhcCCE-EEEEecCC
Q 031506 69 FSGANVVELGAGTSLPGLV----AAKVGSN-VTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~GtGl~~i~----~a~~g~~-v~~tD~~~ 102 (158)
++++++|=.|++.| +|.. +++.|++ |++++.++
T Consensus 4 ~~~k~vlItGa~g~-iG~~la~~l~~~G~~~V~~~~r~~ 41 (260)
T PRK06198 4 LDGKVALVTGGTQG-LGAAIARAFAERGAAGLVICGRNA 41 (260)
T ss_pred CCCcEEEEeCCCch-HHHHHHHHHHHCCCCeEEEEcCCH
Confidence 46778888887544 4443 3456887 99999875
No 493
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.94 E-value=45 Score=28.07 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=23.9
Q ss_pred CCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCCh
Q 031506 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR 103 (158)
Q Consensus 70 ~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~ 103 (158)
+|..+.=+|.| .|+.-+.-++ +|+ +++++|+++.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~ 228 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPD 228 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHH
Confidence 56677777777 5655554444 566 9999999975
No 494
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=44.88 E-value=49 Score=26.45 Aligned_cols=39 Identities=31% Similarity=0.363 Sum_probs=26.4
Q ss_pred CeEEEeccC-CC-HHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 031506 72 ANVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (158)
Q Consensus 72 ~~vLELG~G-tG-l~~i~~a~~g~~v~~tD~~~~~~~l~~~~~ 112 (158)
++|.=+||| .| .++..+++.|.+|++.|.++. .++.+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~--~l~~~~~ 44 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE--ILKNAME 44 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH--HHHHHHH
Confidence 356667887 33 344466778889999999964 6665443
No 495
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.73 E-value=1.1e+02 Score=25.84 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=23.1
Q ss_pred CCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCC
Q 031506 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 70 ~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~ 102 (158)
.+++++=+|.| +|.... .+++.|++|++.|.+.
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 56778888877 343332 4566799999999865
No 496
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=44.65 E-value=71 Score=27.61 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=26.9
Q ss_pred CCCCCeEEEeccC-CCHHHH-HHhhcCCEEEEEecCCh
Q 031506 68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (158)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~i-~~a~~g~~v~~tD~~~~ 103 (158)
.+.+++|+=+|+| .|.... .+...|++|+++|.++.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 4688999999998 453333 34456889999999874
No 497
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=44.58 E-value=1.5e+02 Score=24.11 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=22.3
Q ss_pred CCCCeEEEeccC-CCHHHH-HHhhcCC-EEEEEecCC
Q 031506 69 FSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i-~~a~~g~-~v~~tD~~~ 102 (158)
+...+||=+||| .|.--. -++..|. ++++.|.+.
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 356689999998 332222 3455665 899998775
No 498
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=44.48 E-value=40 Score=27.49 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=26.4
Q ss_pred CCCCeEEEeccC-CCHHHHHHhh-cCC-EEEEEecCChHHHHHHH
Q 031506 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (158)
Q Consensus 69 ~~~~~vLELG~G-tGl~~i~~a~-~g~-~v~~tD~~~~~~~l~~~ 110 (158)
.++.+||=.||| .|..++.+|+ +|+ +|+++|.++. -.+.+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~--~~~~~ 217 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR--KLEWA 217 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHH
Confidence 467788888876 4555554454 577 5999988753 34444
No 499
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.29 E-value=1.1e+02 Score=23.67 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=25.9
Q ss_pred CCCCCeEEEeccCCC-HHHH----HHhhcCCEEEEEecCC
Q 031506 68 RFSGANVVELGAGTS-LPGL----VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 68 ~~~~~~vLELG~GtG-l~~i----~~a~~g~~v~~tD~~~ 102 (158)
.++++.+|=.|+++| -+|. .+++.|++|++++.+.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 457889999998752 4444 4556789999999875
No 500
>PRK07825 short chain dehydrogenase; Provisional
Probab=44.23 E-value=1.5e+02 Score=22.89 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCCeEEEeccCCCHHHH---HHhhcCCEEEEEecCC
Q 031506 70 SGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (158)
Q Consensus 70 ~~~~vLELG~GtGl~~i---~~a~~g~~v~~tD~~~ 102 (158)
+++++|=.|++.|+-.. .+++.|++|++++.++
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~ 39 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDE 39 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 46788888887554332 3456789999999875
Done!