BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031507
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 30 SCGYELNLSSCNRNISSIGLKYG------KSMK-------RGIIAFVDIDESRFTQVDEL 76
+CG+++N + ++ +G+ G K K +GI F D D +
Sbjct: 224 ACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAI 283
Query: 77 QCIPHFSKNSWGILRHRTKLLC 98
Q P FS + I R RT + C
Sbjct: 284 QAAPSFSNSFPQIFRDRTDIQC 305
>pdb|3P2W|A Chain A, Unliganded Form Of Polo-Like Kinase I Polo-Box Domain
pdb|3P2Z|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With Plhspta
Phosphopeptide From Pbip1
pdb|3P34|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With Mqsptpl
Phosphopeptide
pdb|3P35|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With Mqspspl
Phosphopeptide
pdb|3P35|B Chain B, Polo-Like Kinase I Polo-Box Domain In Complex With Mqspspl
Phosphopeptide
pdb|3P35|C Chain C, Polo-Like Kinase I Polo-Box Domain In Complex With Mqspspl
Phosphopeptide
pdb|3P36|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With
Dpplhspta Phosphopeptide From Pbip1
pdb|3P37|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With
Fdpplhspta Phosphopeptide From Pbip1
pdb|3P37|B Chain B, Polo-Like Kinase I Polo-Box Domain In Complex With
Fdpplhspta Phosphopeptide From Pbip1
pdb|3P37|C Chain C, Polo-Like Kinase I Polo-Box Domain In Complex With
Fdpplhspta Phosphopeptide From Pbip1
pdb|3Q1I|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With
Fmpppmspsm Phosphopeptide From Tcerg1
pdb|4E67|A Chain A, The Structure Of The Polo-Box Domain (Pbd) Of Polo-Like
Kinase 1 (Plk1) In Complex With
Hydrocinnamoyl-Derivatized Plhspta Peptide
pdb|4E9C|A Chain A, The Structure Of The Polo-Box Domain (Pbd) Of Polo-Like
Kinase 1 (Plk1) In Complex With Ldpplhspta
Phosphopeptide
pdb|4E9D|A Chain A, The Structure Of The Polo-Box Domain (Pbd) Of Polo-Like
Kinase 1 (Plk1) In Complex With
3-(1-Benzothiophen-2-Yl)propanoyl-Derivatized Dpplhspta
Peptide
Length = 232
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 29 GSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWG 88
GS ++ +LS + + S+ K +RG++ R + ++ CIP F + W
Sbjct: 4 GSPEFDCHLSDMLQQLHSVNA--SKPSERGLV--------RQEEAEDPACIPIFWVSKWV 53
Query: 89 ILRHRTKLLCRKCGNPIGIAYTDKT 113
+ L + C N +G+ + D T
Sbjct: 54 DYSDKYGLGYQLCDNSVGVLFNDST 78
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 30 SCGYELNLSSCNRNISSIGLKYG------KSMK-------RGIIAFVDIDESRFTQVDEL 76
+CG+++N + ++ +G+ G K K +GI F D D +
Sbjct: 131 ACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAI 190
Query: 77 QCIPHFSKNSWGILRHRTKLLC 98
Q P FS + I R RT + C
Sbjct: 191 QAAPSFSNSFPQIFRDRTDIQC 212
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 30 SCGYELNLSSCNRNISSIGLKYG------KSMK-------RGIIAFVDIDESRFTQVDEL 76
+CG+++N + ++ +G+ G K K +GI F D D +
Sbjct: 131 ACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAI 190
Query: 77 QCIPHFSKNSWGILRHRTKLLC 98
Q P FS + I R RT + C
Sbjct: 191 QAAPSFSNSFPQIFRDRTDIQC 212
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 30 SCGYELNLSSCNRNISSIGLKYG------KSMK-------RGIIAFVDIDESRFTQVDEL 76
+CG+++N + ++ +G+ G K K +GI F D D +
Sbjct: 143 ACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAI 202
Query: 77 QCIPHFSKNSWGILRHRTKLLC 98
Q P FS + I R RT + C
Sbjct: 203 QAAPSFSNSFPQIFRDRTDIQC 224
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 30 SCGYELNLSSCNRNISSIGLKYG------KSMK-------RGIIAFVDIDESRFTQVDEL 76
+CG+++N + ++ +G+ G K K +GI F D D +
Sbjct: 131 ACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAI 190
Query: 77 QCIPHFSKNSWGILRHRTKLLC 98
Q P FS + I R RT + C
Sbjct: 191 QAAPSFSNSFPQIFRDRTDIQC 212
>pdb|2WB8|A Chain A, Crystal Structure Of Haspin Kinase
Length = 352
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 36 NLSSCNRNISSIGLKYGKSMKRGIIAFVDI--DESRFT-----QVDELQCIPHFSKNSWG 88
+ SC +S I + + GI+ F D+ DE FT Q D + + + N WG
Sbjct: 229 TIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWG 288
>pdb|3DLZ|A Chain A, Crystal Structure Of Human Haspin In Complex With Amp
pdb|3E7V|A Chain A, Crystal Structure Of Human Haspin With A
Pyrazolo-Pyrimidine Ligand
pdb|3F2N|A Chain A, Crystal Structure Of Human Haspin With An
Imidazo-Pyridazine Ligand
pdb|3FMD|A Chain A, Crystal Structure Of Human Haspin With An Isoquinoline
Ligand
pdb|3IQ7|A Chain A, Crystal Structure Of Human Haspin In Complex With
5-Iodotubercidin
Length = 357
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 36 NLSSCNRNISSIGLKYGKSMKRGIIAFVDI--DESRFT-----QVDELQCIPHFSKNSWG 88
+ SC +S I + + GI+ F D+ DE FT Q D + + + N WG
Sbjct: 234 TIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWG 293
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 30 SCGYELNL-------------SSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDEL 76
+CG+++N S +N+ I + +GI F D D +
Sbjct: 177 ACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAI 236
Query: 77 QCIPHFSKNSWGILRHRTKLLC 98
Q P FS + I R RT + C
Sbjct: 237 QAAPSFSNSFPQIFRDRTDIQC 258
>pdb|2VUW|A Chain A, Structure Of Human Haspin Kinase Domain
Length = 336
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 36 NLSSCNRNISSIGLKYGKSMKRGIIAFVDI--DESRFT-----QVDELQCIPHFSKNSWG 88
+ SC +S I + + GI+ F D+ DE FT Q D + + N WG
Sbjct: 213 TIPSCGLQVSIIDYTLSRLERDGIVVFCDVSXDEDLFTGDGDYQFDIYRLXKKENNNRWG 272
>pdb|4H5X|B Chain B, Human Plk1-Pbd With A Glycerol Bound At The Phophopeptide
Binding Site
pdb|4H5X|A Chain A, Human Plk1-Pbd With A Glycerol Bound At The Phophopeptide
Binding Site
pdb|4H71|B Chain B, Human Plk1-Pbd In Complex With Poloxime
((E)-4-(Hydroxyimino)-2-
Isopropyl-5-Methylcyclohexa-2,5-Dienone)
pdb|4H71|A Chain A, Human Plk1-Pbd In Complex With Poloxime
((E)-4-(Hydroxyimino)-2-
Isopropyl-5-Methylcyclohexa-2,5-Dienone)
pdb|4HCO|B Chain B, Human Plk1-Pbd In Complex With Thymoquinone At The
Phophopeptide Binding Site
pdb|4HCO|A Chain A, Human Plk1-Pbd In Complex With Thymoquinone At The
Phophopeptide Binding Site
Length = 240
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 69 RFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKT 113
R + ++ CIP F + W + L + C N +G+ + D T
Sbjct: 33 RQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDST 77
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 30 SCGYELNL-------------SSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDEL 76
+CG+++N S +N+ I + +GI F D D +
Sbjct: 224 ACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAI 283
Query: 77 QCIPHFSKNSWGILRHRTKLLC 98
Q P FS + I R RT + C
Sbjct: 284 QAAPSFSNSFPQIFRDRTDIQC 305
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 26.2 bits (56), Expect = 8.0, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 30 SCGYELNL-------------SSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDEL 76
+CG+++N S +N+ I + +GI F D D +
Sbjct: 224 ACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAI 283
Query: 77 QCIPHFSKNSWGILRHRTKLLC 98
Q P FS + I R RT + C
Sbjct: 284 QAAPSFSNSFPQIFRDRTDIQC 305
>pdb|1UMW|A Chain A, Structure Of A Human Plk1 Polo-Box DomainPHOSPHOPEPTIDE
Complex
pdb|1UMW|B Chain B, Structure Of A Human Plk1 Polo-Box DomainPHOSPHOPEPTIDE
Complex
pdb|1Q4O|A Chain A, The Structure Of The Polo Box Domain Of Human Plk1
pdb|1Q4O|B Chain B, The Structure Of The Polo Box Domain Of Human Plk1
pdb|3HIK|A Chain A, Structure Of Human Plk1-Pbd In Complex With Plhspt
pdb|4DFW|A Chain A, Oxime-Based Post Solid-Phase Peptide Diversification:
Identification Of High Affinity Polo-Like Kinase 1
(Plk1) Polo-Box Domain Binding Peptides
Length = 237
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 69 RFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKT 113
R + ++ CIP F + W + L + C N +G+ + D T
Sbjct: 30 RQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDST 74
>pdb|2OGQ|A Chain A, Molecular And Structural Basis Of Plk1 Substrate
Recognition: Implications In Centrosomal Localization
pdb|2OJX|A Chain A, Molecular And Structural Basis Of Polo-Like Kinase 1
Substrate Recognition: Implications In Centrosomal
Localization
pdb|3BZI|A Chain A, Molecular And Structural Basis Of Polo-Like Kinase 1
Substrate Recognition: Implications In Centrosomal
Localization
Length = 239
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 69 RFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKT 113
R + ++ CIP F + W + L + C N +G+ + D T
Sbjct: 32 RQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDST 76
>pdb|3FVH|A Chain A, Polo-Like Kinase 1 Polo Box Domain In Complex With
Ac-Lhspta-Nh2 Peptide
pdb|3RQ7|A Chain A, Polo-Like Kinase 1 Polo Box Domain In Complex With A
C6h5(Ch2)8- Derivatized Peptide Inhibitor
Length = 237
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 69 RFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKT 113
R + ++ CIP F + W + L + C N +G+ + D T
Sbjct: 30 RQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDST 74
>pdb|1Q4K|B Chain B, The Polo-Box Domain Of Plk1 In Complex With A Phospho-
Peptide
pdb|1Q4K|A Chain A, The Polo-Box Domain Of Plk1 In Complex With A Phospho-
Peptide
pdb|1Q4K|C Chain C, The Polo-Box Domain Of Plk1 In Complex With A Phospho-
Peptide
Length = 259
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 69 RFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKT 113
R + ++ CIP F + W + L + C N +G+ + D T
Sbjct: 52 RQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDST 96
>pdb|3HIH|A Chain A, Structure Of Human Plk1-pbd With Glycerol And Sulfate In
The Phophopeptide Binding Site
pdb|3HIH|B Chain B, Structure Of Human Plk1-pbd With Glycerol And Sulfate In
The Phophopeptide Binding Site
Length = 223
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 69 RFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKT 113
R + ++ CIP F + W + L + C N +G+ + D T
Sbjct: 26 RQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDST 70
>pdb|3C5L|A Chain A, Polo-Like Kinase 1 Polo Box Domain In Complex With Pphspt
Peptide
Length = 221
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 69 RFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKT 113
R + ++ CIP F + W + L + C N +G+ + D T
Sbjct: 24 RQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDST 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,956,124
Number of Sequences: 62578
Number of extensions: 191723
Number of successful extensions: 496
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 22
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)