BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031507
         (158 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9STN5|Y4833_ARATH Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis
           thaliana GN=At4g08330 PE=1 SV=1
          Length = 164

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/128 (64%), Positives = 98/128 (76%), Gaps = 1/128 (0%)

Query: 22  RHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPH 81
           RHV+YSCGSCGYELNLSS NR  S+IG KYGKSMK GII+F +IDE RF+QVDE QC+PH
Sbjct: 34  RHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEGRFSQVDEFQCMPH 93

Query: 82  FSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRI 141
           FS+ SWG+ RHRTKLLCRKC N IG A  +K   Y+  +  SD P+ P      KYD+RI
Sbjct: 94  FSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSD-PTSPRIGSVTKYDIRI 152

Query: 142 RALQPSSS 149
           R+LQPSS+
Sbjct: 153 RSLQPSSA 160


>sp|P44655|NAPC_HAEIN Cytochrome c-type protein NapC OS=Haemophilus influenzae (strain
           ATCC 51907 / DSM 11121 / KW20 / Rd) GN=napC PE=4 SV=1
          Length = 200

 Score = 30.8 bits (68), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 50  KYGKSMKRGIIAFVDIDESRFTQVDELQCIP----HFSKNSWGILRHRTKLLCRKCGNPI 105
           ++G  MKR IIA  ++      +VD L+         ++N W  ++      CR C N  
Sbjct: 91  EFGAKMKRKIIAAKEVYAHYTGKVDTLEKFNAHRLEMAQNEWARMKANDSKECRNCHNVD 150

Query: 106 GIAYTDKTSA 115
            + + D+ S 
Sbjct: 151 RMTFNDQRSV 160


>sp|Q12766|HMGX3_HUMAN HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2
          Length = 1538

 Score = 30.8 bits (68), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 93  RTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEES 152
           R + +CR+ G     +++ + +  SP+ +   +    GA+ RR+   R+R   PSSS  +
Sbjct: 171 RLRAVCRRAGPRGRGSFSPRDARASPRLHFLVAAVTTGAASRRQRGARVRQPSPSSSRRA 230


>sp|O29316|Y946_ARCFU Uncharacterized protein AF_0946 OS=Archaeoglobus fulgidus (strain
           ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
           GN=AF_0946 PE=4 SV=1
          Length = 1036

 Score = 29.6 bits (65), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 5   VYVNGNHHHSFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIGLK 50
           +YVNG   +++  S++Q + + S  SCG E  ++  ++   S+G K
Sbjct: 80  LYVNGQIKNNYYCSVTQTNNTTSWMSCGIEYTITDTSQTNISVGNK 125


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,363,453
Number of Sequences: 539616
Number of extensions: 2408039
Number of successful extensions: 6079
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6069
Number of HSP's gapped (non-prelim): 13
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)