Query 031507
Match_columns 158
No_of_seqs 119 out of 918
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 00:25:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hcj_A MSRB, peptide methionin 100.0 9.1E-43 3.1E-47 276.0 7.6 104 9-151 32-138 (154)
2 3e0o_A Peptide methionine sulf 100.0 2.4E-42 8.2E-47 271.1 8.4 101 9-149 24-127 (144)
3 2k8d_A Peptide methionine sulf 100.0 1.2E-42 4.1E-47 274.6 5.8 103 10-151 44-149 (151)
4 2l1u_A MSRB2, methionine-R-sul 100.0 2.1E-42 7.1E-47 271.2 7.1 110 10-151 20-132 (143)
5 3cxk_A Methionine-R-sulfoxide 100.0 4.5E-42 1.6E-46 274.3 7.5 102 11-151 57-162 (164)
6 3hcg_A Peptide methionine sulf 100.0 3.3E-42 1.1E-46 270.8 6.0 102 10-149 26-130 (146)
7 3mao_A Methionine-R-sulfoxide 100.0 1.3E-41 4.4E-46 255.2 6.7 92 20-151 8-101 (105)
8 2kv1_A Methionine-R-sulfoxide 100.0 7.8E-41 2.7E-45 257.1 7.7 98 14-151 6-108 (124)
9 2kao_A Methionine-R-sulfoxide 100.0 1.9E-40 6.4E-45 255.0 7.2 92 20-151 15-108 (124)
10 3e0m_A Peptide methionine sulf 100.0 2.1E-38 7.2E-43 273.6 7.9 103 10-150 192-297 (313)
11 3fac_A Putative uncharacterize 63.0 7.1 0.00024 27.7 3.6 19 94-112 66-84 (118)
12 1pft_A TFIIB, PFTFIIBN; N-term 55.8 8.3 0.00028 23.6 2.5 24 21-47 20-43 (50)
13 3qt1_I DNA-directed RNA polyme 52.8 7.4 0.00025 29.3 2.3 19 91-109 88-106 (133)
14 1dl6_A Transcription factor II 50.9 7.1 0.00024 25.3 1.7 30 21-63 26-55 (58)
15 3ec1_A YQEH GTPase; atnos1, at 38.7 6.5 0.00022 33.0 0.0 18 27-46 6-23 (369)
16 3h0g_I DNA-directed RNA polyme 37.6 15 0.0005 26.5 1.8 20 91-110 68-87 (113)
17 1qyp_A RNA polymerase II; tran 36.6 12 0.00041 23.6 1.0 19 91-109 11-29 (57)
18 3h2y_A GTPase family protein; 31.0 10 0.00035 31.9 0.0 18 27-46 6-23 (368)
19 1twf_L ABC10-alpha, DNA-direct 26.6 69 0.0024 21.5 3.6 41 22-62 25-67 (70)
20 1vq8_1 50S ribosomal protein L 25.7 20 0.00069 23.8 0.7 18 92-109 14-31 (57)
21 2lo3_A SAGA-associated factor 20.1 36 0.0012 21.6 1.0 12 26-37 18-29 (44)
No 1
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=100.00 E-value=9.1e-43 Score=275.98 Aligned_cols=104 Identities=19% Similarity=0.383 Sum_probs=86.1
Q ss_pred CCccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccC
Q 031507 9 GNHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKN 85 (158)
Q Consensus 9 ~~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~ 85 (158)
.---+.|++.+ .+++|+|+|++||+||| +|++|||||| |||||++ |++.+|++.. |.
T Consensus 32 ~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KFdSg~----------GWPSF~~pi~~~~v~~~~---------D~ 91 (154)
T 3hcj_A 32 HGTEAPFCGVFLDNKLDGVYTCRLCGLPLF-RSNAKFDSGT----------GWPSFFAPYDPAHVREIR---------DT 91 (154)
T ss_dssp CSSSCCCCCCCCSSCSSEEEEETTTCCEEE-EECTTCCCCT----------TSSTTEEESCGGGEEEEC---------CT
T ss_pred cCCCCCCcCCCCCCCCCEEEEccCCCCccc-cCcccccCCC----------CCcccccccCccceEEee---------cC
Confidence 33446788877 88999999999999997 8999999999 5555555 3444444432 45
Q ss_pred CCCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507 86 SWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE 151 (158)
Q Consensus 86 s~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~ 151 (158)
++| |.||||+|++||+||||||+|||+ |||+||||||+||+|++.++
T Consensus 92 s~g--m~RtEV~C~~Cg~HLGHVF~DGP~-----------------ptg~RyCiNS~sL~F~p~~~ 138 (154)
T 3hcj_A 92 SYG--MIRTEIVCARCDSHLGHVFPDGPP-----------------PTGERHCLNSVSLAFTEDGQ 138 (154)
T ss_dssp TTT--TSCEEEEETTTCCEEEEEESCSCT-----------------TTTCEEEECGGGEEEEETTS
T ss_pred CCC--ceEEEEEeCCCCCccCCccCCCCC-----------------CCCCEeeeceeeEEeeeCCC
Confidence 666 799999999999999999999997 99999999999999999754
No 2
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=100.00 E-value=2.4e-42 Score=271.12 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=85.9
Q ss_pred CCccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccC
Q 031507 9 GNHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKN 85 (158)
Q Consensus 9 ~~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~ 85 (158)
.---++|++.+ .+++|+|+|++||+||| +|++|||||| |||||++ |++ +|++.. |.
T Consensus 24 ~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KfdSg~----------GWPSF~~pi~~-~v~~~~---------D~ 82 (144)
T 3e0o_A 24 NGTEPPFQNEYWDHKEEGLYVDIVSGKPLF-TSKDKFDSQC----------GWPSFTKPIEE-EVEEKL---------DT 82 (144)
T ss_dssp CCCCCTTCSTTSSCCCSEEEEETTTCCEEE-ETTTBCCCTT----------SSCEESCCSTT-TEEEEE---------EC
T ss_pred cCCCCCCcCCCCCcCCCEEEEeCCCCcccc-cCcccccCCC----------CCcccCchhcc-ceEEee---------cC
Confidence 33456788876 78999999999999997 8999999999 6777776 344 555443 46
Q ss_pred CCCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCC
Q 031507 86 SWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSS 149 (158)
Q Consensus 86 s~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~ 149 (158)
++| |+||||+|++||+||||||+|||+ |||+||||||+||+|++.
T Consensus 83 s~g--m~RtEV~C~~Cg~HLGHVF~DGP~-----------------ptg~RyCiNS~sL~F~p~ 127 (144)
T 3e0o_A 83 SHG--MIRTEVRSRTADSHLGHVFNDGPG-----------------PNGLRYCINSAALRFVPK 127 (144)
T ss_dssp CTT--SCEEEEEETTTCCEEEEEESCCSS-----------------TTCCEEEECGGGEEEEEH
T ss_pred CCC--ceEEEEEcCCCCCccCCccCCCCC-----------------CCCCEeeeceeeEeeeec
Confidence 666 799999999999999999999997 999999999999999986
No 3
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.2e-42 Score=274.61 Aligned_cols=103 Identities=22% Similarity=0.412 Sum_probs=87.2
Q ss_pred CccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCC
Q 031507 10 NHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNS 86 (158)
Q Consensus 10 ~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s 86 (158)
---++|++.+ .+++|+|+|++||+||| +|++|||||| |||||++ |++.+|++.. |.+
T Consensus 44 gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KFdSg~----------GWPSF~~pi~~~~V~~~~---------D~s 103 (151)
T 2k8d_A 44 GTEPPFTGKYHDLHDDGIYRCICCGTDLF-DSETKFDSGT----------GWPSFYDVVSEHNIKLRE---------DRS 103 (151)
T ss_dssp TCSSSCSCCCCCCCSCSEEEETTTTEEEE-EGGGSCCSTT----------CCSEESCCSCTTSEECCC---------CBT
T ss_pred CCCCCCccCCcCCCCCEEEEecCCCCccc-CCcccccCCC----------CCcccCcccCCCceEEee---------CCC
Confidence 3456788887 78999999999999997 8999999999 6666666 3444555443 456
Q ss_pred CCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507 87 WGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE 151 (158)
Q Consensus 87 ~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~ 151 (158)
+| |+||||+|++||+||||||+|||+ |||+||||||+||+|.+.++
T Consensus 104 ~g--m~RtEV~C~~Cg~HLGHVF~DGP~-----------------ptg~RyCINS~sL~F~p~~~ 149 (151)
T 2k8d_A 104 LG--MVRCEVLCARCDAHLGHVFDDGPR-----------------PTGKRYCMNSAALKFIPRDQ 149 (151)
T ss_dssp TS--SCEEEEEETTEEEEEEEEEECSSS-----------------SSCEEEEECSTTEEEECSSS
T ss_pred CC--ceEEEEEeCCCCCcCCcccCCCCC-----------------CCCCEEeeceeeecccchHH
Confidence 65 899999999999999999999997 89999999999999998764
No 4
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=100.00 E-value=2.1e-42 Score=271.22 Aligned_cols=110 Identities=18% Similarity=0.298 Sum_probs=86.3
Q ss_pred CccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCC-CCCCCcCCCCceeEEcccCccceeecccccccccccCC
Q 031507 10 NHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIG-LKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNS 86 (158)
Q Consensus 10 ~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~G-psf~~~~~~G~~sF~~id~~~~~~~~e~~~~p~f~~~s 86 (158)
---++|++.+ .+++|+|+|++||+||| +|++||||||| |||+++|.. |-.| .++.+|+... |.+
T Consensus 20 gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KFdSg~GWPSF~~pi~~-~~~~--~~~~~V~~~~---------D~s 86 (143)
T 2l1u_A 20 GTEAPFSGMYLNNKETGMYHCVCCDSPLF-SSEKKYCSGTGWPSFSEAYGS-KGSD--ESHTGILRRL---------DTS 86 (143)
T ss_dssp TCCCSCCGGGSSCCCCEEEEESSSSCEEE-EGGGBCTTTTCCSBBSSCCSC-CTTH--HHHTCEEEEE---------ECT
T ss_pred CCCCCCcCCCcCCcCCeEEEeCCCCCeee-cCcccccCCCCChhhchhhcc-cccc--CCCCceEEee---------ccc
Confidence 3446778777 78999999999999997 89999999996 566555531 1000 0033444432 456
Q ss_pred CCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507 87 WGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE 151 (158)
Q Consensus 87 ~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~ 151 (158)
+| |+||||+|++||+||||||+|||+ |||+||||||+||+|.+.++
T Consensus 87 ~g--m~RtEV~C~~Cg~HLGHVF~DGP~-----------------ptg~RyCINS~sL~F~p~~~ 132 (143)
T 2l1u_A 87 LG--CPRMEVVCKQCEAHLGHVFPDGPK-----------------PTGQRFCINSVALKFKPSKP 132 (143)
T ss_dssp TS--SCEEEEEESSSCCCCEEEECCSSC-----------------GGGCEEEECCTTEEEEESSB
T ss_pred CC--ceEEEEEECCCCCcCCcccCCCCC-----------------CCCCEEEeeeeEEeccchhh
Confidence 66 799999999999999999999997 99999999999999998754
No 5
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=100.00 E-value=4.5e-42 Score=274.27 Aligned_cols=102 Identities=22% Similarity=0.390 Sum_probs=85.9
Q ss_pred ccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCCC
Q 031507 11 HHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNSW 87 (158)
Q Consensus 11 ~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s~ 87 (158)
--++|++.+ .+++|+|+|++||+||| +|++|||||| |||||++ |++++|++.. |.++
T Consensus 57 TErpftg~y~~~~~~GiY~C~~Cg~pLF-~S~~KFdSGc----------GWPSF~~pi~~~~V~~~~---------D~s~ 116 (164)
T 3cxk_A 57 TEPPFTGEYTDTEDAGIYHCVVCGTALF-ESGAKYHSGC----------GWPSYFKPIDGEVIDEKM---------DYTH 116 (164)
T ss_dssp CCCTTCSTTTTCCCSEEEEETTTCCEEE-EGGGBCCCCS----------SSCEESSCSSTTSEEEEE---------ECGG
T ss_pred CCCCCcccccccCCCeEEEccCCCcccc-CCchhccCCC----------CCcccCcccCCCceEEeE---------CCCC
Confidence 346778877 88999999999999997 8999999999 6777766 3455555543 4556
Q ss_pred CCceeeeEEecCccCCCeeeecCCCC-CCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507 88 GILRHRTKLLCRKCGNPIGIAYTDKT-SAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE 151 (158)
Q Consensus 88 g~~m~RTEv~C~~Cg~HLGHVF~DGP-~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~ 151 (158)
| |+||||+|++||+||||||+||| + |||+||||||+||+|+++++
T Consensus 117 g--m~RtEV~C~~Cg~HLGHVF~DGP~~-----------------ptg~RyCINS~sL~F~p~~~ 162 (164)
T 3cxk_A 117 G--MTRVEVRCNQCGAHLGHVFEDGPRD-----------------KTGLRYCINSAALNFEAKPE 162 (164)
T ss_dssp G--CCEEEEEETTTCCEEEEEESCSCTT-----------------TTSCEEEECGGGEEEEECC-
T ss_pred C--cEEEEEEeCCCCCccCcccCCCCCC-----------------CCCCEEeeceeeEeeecccc
Confidence 5 79999999999999999999999 5 89999999999999998754
No 6
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=100.00 E-value=3.3e-42 Score=270.81 Aligned_cols=102 Identities=22% Similarity=0.231 Sum_probs=85.2
Q ss_pred CccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCC
Q 031507 10 NHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNS 86 (158)
Q Consensus 10 ~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s 86 (158)
---++|++.+ .+++|+|+|++||+||| +|++|||||| |||||++ |++.+|+... |.+
T Consensus 26 gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KFdSg~----------GWPSF~~pi~~~~v~~~~---------D~s 85 (146)
T 3hcg_A 26 ATEYAFSHEYDHLFKPGIYVDVVSGEPLF-SSADKYDSGC----------GWPSFTRPIDAKSVTEHD---------DFS 85 (146)
T ss_dssp CCCCTTCSGGGGCCCSEEEEETTTCCEEE-EGGGEECCSS----------SSCEESSCSSGGGEEEEE---------EEE
T ss_pred CCCCCCCCCCcCCCCCEEEEecCCCcccc-cCcccccCCC----------CChhhccccCCCceEEee---------cCC
Confidence 3446788876 78999999999999997 8999999999 5666666 4445555443 456
Q ss_pred CCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCC
Q 031507 87 WGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSS 149 (158)
Q Consensus 87 ~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~ 149 (158)
+| |+||||+|++||+||||||+|||+ .|||+||||||+||+|++.
T Consensus 86 ~g--m~RtEV~C~~Cg~HLGHVF~DGP~----------------~~tg~RyCiNS~sL~F~p~ 130 (146)
T 3hcg_A 86 YN--MRRTEVRSHAADSHLGHVFPDGPR----------------DKGGLRYCINGASLKFIPL 130 (146)
T ss_dssp TT--EEEEEEEETTTCCEEEEEESCSCG----------------GGTSCEEEECGGGEEEEEH
T ss_pred CC--cEEEEEEeCCCCCccCceeCCCCC----------------CCCCCEEeeeeEEEEeeeh
Confidence 65 899999999999999999999996 2699999999999999885
No 7
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=255.18 Aligned_cols=92 Identities=26% Similarity=0.453 Sum_probs=77.6
Q ss_pred cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCCCCCceeeeEEec
Q 031507 20 SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNSWGILRHRTKLLC 98 (158)
Q Consensus 20 ~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s~g~~m~RTEv~C 98 (158)
.+++|+|+|++||+||| +|++|||||| |||||++ +++.+|++..| . ++ |.||||+|
T Consensus 8 ~~~~G~Y~C~~Cg~pLF-~S~~KFdSg~----------GWPSF~~pi~~~~v~~~~D---------~-~~--~~RtEV~C 64 (105)
T 3mao_A 8 HFEPGVYVCAKCGYELF-SSRSKYAHSS----------PWPAFTETIHADSVAKRPE---------H-NR--SEALKVSC 64 (105)
T ss_dssp CCCSEEEEETTTCCEEE-EGGGEECCSS----------SSCEESCCSSTTSEEEEEC---------T-TS--TTEEEEEE
T ss_pred CCCCEEEEcCCCCCccc-cCCcccCCCC----------CChhhccccCCCceEEEec---------C-CC--CCEEEEEe
Confidence 57899999999999997 8999999999 5666666 44555554432 1 23 67999999
Q ss_pred CccCCCeeeec-CCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507 99 RKCGNPIGIAY-TDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE 151 (158)
Q Consensus 99 ~~Cg~HLGHVF-~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~ 151 (158)
++||+|||||| +|||+ |||+||||||+||+|.+.++
T Consensus 65 ~~C~~HLGHVF~~DGP~-----------------ptg~RyCiNS~sL~F~p~~~ 101 (105)
T 3mao_A 65 GKCGNGLGHEFLNDGPK-----------------PGQSRFSIFSSSLKFVPKGK 101 (105)
T ss_dssp TTTCCEEEEEETTCSSS-----------------TTCCEEEECGGGEEEEETTC
T ss_pred CCCCCccCcccCCCCcC-----------------CCCCEEeeCeeeEEeeeccc
Confidence 99999999999 79997 99999999999999999865
No 8
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=100.00 E-value=7.8e-41 Score=257.11 Aligned_cols=98 Identities=22% Similarity=0.422 Sum_probs=78.3
Q ss_pred cCCCCc---cccCeEEEccccCcccccCCCCccCCCCC-CCCCCcCCCCceeEEcccCccceeecccccccccccCCCCC
Q 031507 14 SFSSSI---SQRHVSYSCGSCGYELNLSSCNRNISSIG-LKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGI 89 (158)
Q Consensus 14 ~~~~s~---~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~G-psf~~~~~~G~~sF~~id~~~~~~~~e~~~~p~f~~~s~g~ 89 (158)
.|+..+ .+++|+|+|++||+||| +|++||||||| |||+++|+. ..++++++ .+
T Consensus 6 ~F~ge~y~~~~e~G~Y~C~~Cg~pLF-~S~~KfdSg~GWPSF~~~i~~----------~~v~~~~d---------~~--- 62 (124)
T 2kv1_A 6 FFGGEVFQNHFEPGVYVCAKCSYELF-SSHSKYAHSSPWPAFTETIHP----------DSVTKCPE---------KN--- 62 (124)
T ss_dssp CCCSCSGGGTTCCEEEEETTTCCBCC-CTTSCCCCCSSSCCBSCCCCC----------SSCEEEEC---------SS---
T ss_pred CccCccccCCCCCEEEEecCCCCccc-ccCCcccCCCCCceeeccccc----------ceEEEEec---------cC---
Confidence 355552 56899999999999997 99999999995 455554444 44444332 22
Q ss_pred ceeeeEEecCccCCCeeeec-CCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507 90 LRHRTKLLCRKCGNPIGIAY-TDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE 151 (158)
Q Consensus 90 ~m~RTEv~C~~Cg~HLGHVF-~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~ 151 (158)
+|+||||+|++||+|||||| +|||+ |||+||||||+||+|++.++
T Consensus 63 ~~~r~Ev~C~~Cg~HLGHVF~~DGP~-----------------ptg~RyCINS~sL~F~p~~~ 108 (124)
T 2kv1_A 63 RPEALKVSCGKCGNGLGHEFLNDGPK-----------------RGQSRFCIFSSSLKFVPKGK 108 (124)
T ss_dssp STTCEEEECTTTTCCCEEECTTSCTT-----------------TTCSCEECCTTTEEEEECSS
T ss_pred CceEEEEEEecCCCccCCccCCCCCC-----------------CCCCEEeecceeeEeEECcc
Confidence 25799999999999999999 89997 99999999999999998644
No 9
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=100.00 E-value=1.9e-40 Score=255.02 Aligned_cols=92 Identities=23% Similarity=0.406 Sum_probs=75.6
Q ss_pred cccCeEEEccccCcccccCCCCccCCCCC-CCCCCcCCCCceeEEcccCccceeecccccccccccCCCCCceeeeEEec
Q 031507 20 SQRHVSYSCGSCGYELNLSSCNRNISSIG-LKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLC 98 (158)
Q Consensus 20 ~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~G-psf~~~~~~G~~sF~~id~~~~~~~~e~~~~p~f~~~s~g~~m~RTEv~C 98 (158)
.+++|+|+|++||+||| +|++||||||| |||+++|..+ +|++..| . .+ |.||||+|
T Consensus 15 ~~~~GiY~C~~Cg~pLF-~S~~KFdSG~GWPSF~~pi~~~----------~v~~~~D---------~-~~--~~RtEV~C 71 (124)
T 2kao_A 15 HFEPGVYVCAKCSYELF-SSHSKYAHSSPWPAFTETIHPD----------SVTKCPE---------K-NR--PEALKVSC 71 (124)
T ss_dssp CCCCCEEEESSSCCCCC-CTTTSCCCCCSSCCBSCCCCCS----------SCEEEEC---------S-SC--TTCEEEEC
T ss_pred CCCCEEEEeCCCCCccc-cCcccccCCCCChhhCccCCcc----------ceEEEec---------C-CC--CCEEEEEe
Confidence 57899999999999997 89999999995 4555554443 4443322 1 12 57999999
Q ss_pred CccCCCeeeec-CCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507 99 RKCGNPIGIAY-TDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE 151 (158)
Q Consensus 99 ~~Cg~HLGHVF-~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~ 151 (158)
++||+|||||| +|||+ |||+||||||+||+|.+.++
T Consensus 72 ~~Cg~HLGHVF~~DGP~-----------------ptg~RyCINS~sL~F~p~~~ 108 (124)
T 2kao_A 72 GKCGNGLGHEFLNDGPK-----------------RGQSRFCIFSSSLKFVPKGK 108 (124)
T ss_dssp TTTTCCCEEECCSSCSS-----------------SSCCCEECCSSSEEEECCSS
T ss_pred CCCCCcCCccCCCCCcC-----------------CCCCEeeeCeEEEEeecccc
Confidence 99999999999 79997 99999999999999999755
No 10
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.1e-38 Score=273.63 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=86.1
Q ss_pred CccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCC
Q 031507 10 NHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNS 86 (158)
Q Consensus 10 ~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s 86 (158)
---++|++.+ .+++|+|+|++||+||| +|++|||||| |||||++ +++++|+... |.+
T Consensus 192 gTE~pftg~y~~~~~~G~Y~c~~cg~pLF-~S~~KfdSg~----------GWPSF~~~i~~~~v~~~~---------D~s 251 (313)
T 3e0m_A 192 ATEAPFTNAYDQTFEEGIYVDITTGEPLF-FAKDKFASGC----------GWPSFSRPLSKELIHYYK---------DLS 251 (313)
T ss_dssp CCCCSSSSTTTTCCCSEEEEETTTCCEEE-EGGGBCCCCS----------SSCEESSCSSGGGEEEEE---------ECC
T ss_pred CCCCCCCCCCCCCCCCeEEEecCCCcccc-CCCccccCCC----------CCcccCcccCCCceEEee---------cCC
Confidence 3446788876 78999999999999997 8999999999 5666666 4455555443 456
Q ss_pred CCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCC
Q 031507 87 WGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSE 150 (158)
Q Consensus 87 ~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~ 150 (158)
+| |+||||+|++||+||||||+|||. .|||+||||||+||+|.+.+
T Consensus 252 ~g--m~RtEv~c~~c~~HLGHVF~DGp~----------------~ptg~RyCiNs~sL~F~p~~ 297 (313)
T 3e0m_A 252 HG--MERIEVRSRSGSAHLGHVFTDGPR----------------ELGGLRYCINSASLRFVAKD 297 (313)
T ss_dssp TT--CCEEEEEESSSCCEEEEEESCSCT----------------TTTSCEEEECGGGEEEEEHH
T ss_pred CC--cEEEEEECCCCCCccCcccCCCCC----------------CCCCCEEeeceeeEeeeccc
Confidence 66 799999999999999999999994 28999999999999999863
No 11
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=62.99 E-value=7.1 Score=27.65 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=14.4
Q ss_pred eEEecCccCCCeeeecCCC
Q 031507 94 TKLLCRKCGNPIGIAYTDK 112 (158)
Q Consensus 94 TEv~C~~Cg~HLGHVF~DG 112 (158)
+..-|++||.+|-+...+.
T Consensus 66 ~r~FC~~CGs~l~~~~~~~ 84 (118)
T 3fac_A 66 KHWFCRTCGIYTHHQRRSN 84 (118)
T ss_dssp EEEEETTTCCEEEEECSSC
T ss_pred eeEECCCCCccccCccCCC
Confidence 5678999999987655443
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=55.82 E-value=8.3 Score=23.65 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=16.4
Q ss_pred ccCeEEEccccCcccccCCCCccCCCC
Q 031507 21 QRHVSYSCGSCGYELNLSSCNRNISSI 47 (158)
Q Consensus 21 ~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~ 47 (158)
.+.|...|..||..+ .+...+.|-
T Consensus 20 ~~~gelvC~~CG~v~---~e~~id~~~ 43 (50)
T 1pft_A 20 PERGEIVCAKCGYVI---EENIIDMGP 43 (50)
T ss_dssp TTTTEEEESSSCCBC---CCCCCCCCS
T ss_pred CCCCeEECcccCCcc---cccccccCC
Confidence 356888999998877 345566553
No 13
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=52.80 E-value=7.4 Score=29.31 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=0.0
Q ss_pred eeeeEEecCccCCCeeeec
Q 031507 91 RHRTKLLCRKCGNPIGIAY 109 (158)
Q Consensus 91 m~RTEv~C~~Cg~HLGHVF 109 (158)
..||++.|.+||..-...|
T Consensus 88 lp~t~~~CpkCg~~~a~f~ 106 (133)
T 3qt1_I 88 LPRSDRECPKCHSRENVFF 106 (133)
T ss_dssp -------------------
T ss_pred CCcccCCCCCCCCceEEEE
Confidence 4789999999997655444
No 14
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=50.94 E-value=7.1 Score=25.28 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=22.9
Q ss_pred ccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEE
Q 031507 21 QRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFV 63 (158)
Q Consensus 21 ~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~ 63 (158)
.+.|.+.|..||.-| .+.-.|.|. .|-+|.
T Consensus 26 ~~~ge~vC~~CGlVl---~e~~iD~gp----------EWR~F~ 55 (58)
T 1dl6_A 26 YRAGDMICPECGLVV---GDRVIDVGS----------EWRTFS 55 (58)
T ss_dssp SSSCCEECTTTCCEE---CCSCCCCCC----------SCCCSC
T ss_pred CCCCeEEeCCCCCEE---eccccccCC----------cccccC
Confidence 467899999999988 466777764 577775
No 15
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=38.71 E-value=6.5 Score=33.04 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=0.0
Q ss_pred EccccCcccccCCCCccCCC
Q 031507 27 SCGSCGYELNLSSCNRNISS 46 (158)
Q Consensus 27 ~C~~Cg~~Lf~sS~~KfdSg 46 (158)
.|.+||..|- ++++-..|
T Consensus 6 ~C~gcG~~lq--~~~~~~~g 23 (369)
T 3ec1_A 6 RCIGCGAAIQ--FENPKNAG 23 (369)
T ss_dssp --------------------
T ss_pred eeCCCCceee--cCCCCCCC
Confidence 5999999994 67666665
No 16
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.56 E-value=15 Score=26.50 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=15.1
Q ss_pred eeeeEEecCccCCCeeeecC
Q 031507 91 RHRTKLLCRKCGNPIGIAYT 110 (158)
Q Consensus 91 m~RTEv~C~~Cg~HLGHVF~ 110 (158)
..||++.|.+||..-..-|.
T Consensus 68 lp~~~~~Cp~C~~~~a~~~q 87 (113)
T 3h0g_I 68 LPRSDKECPRCHQHEAVFYQ 87 (113)
T ss_dssp SCBCCSCCSSSCCSCEEEEC
T ss_pred CCCcccCCCCCCCceEEEEE
Confidence 47899999999976555443
No 17
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=36.59 E-value=12 Score=23.62 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=14.2
Q ss_pred eeeeEEecCccCCCeeeec
Q 031507 91 RHRTKLLCRKCGNPIGIAY 109 (158)
Q Consensus 91 m~RTEv~C~~Cg~HLGHVF 109 (158)
..|+++.|.+||.+--.-|
T Consensus 11 ~~~~~~~Cp~Cg~~~~~~~ 29 (57)
T 1qyp_A 11 LPTTKITCPKCGNDTAYWW 29 (57)
T ss_dssp SCEEECCCTTTCCSEEEEE
T ss_pred CCceEeECCCCCCCEEEEE
Confidence 3578999999998655433
No 18
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=31.04 E-value=10 Score=31.86 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=0.0
Q ss_pred EccccCcccccCCCCccCCC
Q 031507 27 SCGSCGYELNLSSCNRNISS 46 (158)
Q Consensus 27 ~C~~Cg~~Lf~sS~~KfdSg 46 (158)
.|.+||..|- ++++-..|
T Consensus 6 ~C~gcG~~lq--~~~~~~~g 23 (368)
T 3h2y_A 6 KCIGCGVEIQ--TEDKNEVG 23 (368)
T ss_dssp --------------------
T ss_pred eeCCCcceeE--cCCCCCCC
Confidence 5999999994 66666655
No 19
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=26.57 E-value=69 Score=21.55 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=24.3
Q ss_pred cCeEEEccccCccccc-CCCCccCCCCC-CCCCCcCCCCceeE
Q 031507 22 RHVSYSCGSCGYELNL-SSCNRNISSIG-LKYGKSMKRGIIAF 62 (158)
Q Consensus 22 ~~G~Y~C~~Cg~~Lf~-sS~~KfdSg~G-psf~~~~~~G~~sF 62 (158)
....|.|..||...-+ ..+.-.=..|| =-.+|.-.+.++.|
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK~R~~r~v~~ 67 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQF 67 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCBCCCCSSCEEE
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCceEeEecCCCccEEE
Confidence 4689999999999432 33344444566 24444444445544
No 20
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=25.66 E-value=20 Score=23.84 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=14.9
Q ss_pred eeeEEecCccCCCeeeec
Q 031507 92 HRTKLLCRKCGNPIGIAY 109 (158)
Q Consensus 92 ~RTEv~C~~Cg~HLGHVF 109 (158)
.+|.++|++||.+-=|+=
T Consensus 14 ~ktH~~CrRCG~~syH~q 31 (57)
T 1vq8_1 14 TTTHTKCRRCGEKSYHTK 31 (57)
T ss_dssp CCCEEECTTTCSEEEETT
T ss_pred CCccccccccCChhhhcc
Confidence 479999999999876754
No 21
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=20.14 E-value=36 Score=21.57 Aligned_cols=12 Identities=42% Similarity=0.866 Sum_probs=10.0
Q ss_pred EEccccCccccc
Q 031507 26 YSCGSCGYELNL 37 (158)
Q Consensus 26 Y~C~~Cg~~Lf~ 37 (158)
=.|.+||.|+-+
T Consensus 18 RvC~~CgkPi~l 29 (44)
T 2lo3_A 18 RVCEKCGKPLAL 29 (44)
T ss_dssp EECTTTCCEEET
T ss_pred hhhcccCCcchH
Confidence 379999999954
Done!