AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>031508
MAASSSLFTPSTITVRKHQISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAEL
STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSN
DPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with PSAG PSAG PSAG AT1G55670	protein from Arabidopsis thaliana	1.2e-56
BLAST match view associations BLAST with PSAK PSAK PSAK AT1G30380	protein from Arabidopsis thaliana	1.5e-05
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031508
        (158 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2020502 - symbol:PSAG "AT1G55670" species:3702...   583  1.2e-56   1
TAIR|locus:2204207 - symbol:PSAK "AT1G30380" species:3702...   101  1.5e-05   1


>TAIR|locus:2020502 [details] [associations]
            symbol:PSAG "AT1G55670" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009522 "photosystem I"
            evidence=IEA;ISS] [GO:0015979 "photosynthesis"
            evidence=IEA;ISS;IMP] [GO:0016020 "membrane" evidence=IEA;ISS]
            [GO:0009773 "photosynthetic electron transport in photosystem I"
            evidence=IMP] [GO:0050821 "protein stabilization" evidence=IMP]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0009780
            "photosynthetic NADP+ reduction" evidence=IMP] [GO:0042550
            "photosystem I stabilization" evidence=IMP] [GO:0030093
            "chloroplast photosystem I" evidence=IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0019344 "cysteine biosynthetic process" evidence=RCA]
            [GO:0030003 "cellular cation homeostasis" evidence=RCA] [GO:0070838
            "divalent metal ion transport" evidence=RCA] InterPro:IPR000549
            InterPro:IPR023618 Pfam:PF01241 PROSITE:PS01026 GO:GO:0016021
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0050821 GO:GO:0009941
            EMBL:AC002328 GO:GO:0016168 UniGene:At.71449 UniGene:At.21811
            GO:GO:0042550 GO:GO:0009773 TCDB:5.B.4.1.1 EMBL:AJ245630
            EMBL:AF326870 EMBL:AF324710 EMBL:AF339692 EMBL:AF378859
            EMBL:AY050463 EMBL:Z37244 IPI:IPI00546886 RefSeq:NP_175963.1
            UniGene:At.16919 UniGene:At.25349 ProteinModelPortal:Q9S7N7
            SMR:Q9S7N7 STRING:Q9S7N7 PaxDb:Q9S7N7 PRIDE:Q9S7N7
            EnsemblPlants:AT1G55670.1 GeneID:842016 KEGG:ath:AT1G55670
            TAIR:At1g55670 eggNOG:NOG236059 HOGENOM:HOG000243205
            InParanoid:Q9S7N7 KO:K08905 OMA:QNGKTHF PhylomeDB:Q9S7N7
            ProtClustDB:PLN00091 BioCyc:MetaCyc:AT1G55670-MONOMER
            Genevestigator:Q9S7N7 GermOnline:AT1G55670 GO:GO:0030093
            GO:GO:0009780 Gene3D:1.10.286.40 InterPro:IPR016370
            InterPro:IPR017494 PIRSF:PIRSF002912 TIGRFAMs:TIGR03051
            Uniprot:Q9S7N7
        Length = 160

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 117/160 (73%), Positives = 134/160 (83%)

Query:     1 MAASSS-LFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGIKA 58
             MA S+S L +P+T +      +P+SISF GLRPL    + + LPKL+T+ +++S   ++A
Sbjct:     1 MATSASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRA 60

Query:    59 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLK 118
             ELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLK
Sbjct:    61 ELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLK 120

Query:   119 SNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
             SNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct:   121 SNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160


>TAIR|locus:2204207 [details] [associations]
            symbol:PSAK "AT1G30380" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009522 "photosystem I"
            evidence=IEA;ISS] [GO:0015979 "photosynthesis" evidence=IEA;ISS]
            [GO:0016020 "membrane" evidence=IEA;ISS] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0019344 "cysteine biosynthetic process" evidence=RCA]
            [GO:0030003 "cellular cation homeostasis" evidence=RCA] [GO:0070838
            "divalent metal ion transport" evidence=RCA] InterPro:IPR000549
            InterPro:IPR023618 Pfam:PF01241 PROSITE:PS01026 GO:GO:0016021
            EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025295 GO:GO:0009535
            GO:GO:0015979 GO:GO:0009522 GO:GO:0016168 UniGene:At.24759
            TCDB:5.B.4.1.1 Gene3D:1.10.286.40 InterPro:IPR016370
            PIRSF:PIRSF002912 EMBL:AJ245866 EMBL:AY039848 EMBL:AY074826
            IPI:IPI00525222 PIR:B86428 RefSeq:NP_174327.1 UniGene:At.24377
            UniGene:At.67254 ProteinModelPortal:Q9SUI5 SMR:Q9SUI5 STRING:Q9SUI5
            PaxDb:Q9SUI5 PRIDE:Q9SUI5 EnsemblPlants:AT1G30380.1 GeneID:839918
            KEGG:ath:AT1G30380 TAIR:At1g30380 eggNOG:NOG238582
            HOGENOM:HOG000242129 InParanoid:Q9SUI5 KO:K02698 OMA:DTLACGA
            PhylomeDB:Q9SUI5 ProtClustDB:PLN03070 BioCyc:MetaCyc:MONOMER-1091
            Genevestigator:Q9SUI5 GermOnline:AT1G30380 InterPro:IPR017493
            TIGRFAMs:TIGR03050 Uniprot:Q9SUI5
        Length = 130

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 44/132 (33%), Positives = 60/132 (45%)

Query:    27 FQGLRPLNTRAKTPLPKLAT--SAKRNSFG--GIKAEL---STPLVISLSTGLSLFLGRF 79
             F GLR     A  P+  LA+    +R   G  G K +    ST L++  ST L LF GRF
Sbjct:    12 FNGLRATKISA-APVQGLASVQPMRRKGNGALGAKCDFIGSSTNLIMVTSTTLMLFAGRF 70

Query:    80 VFFNFQRENVAKQGL-PEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGH 138
                          GL P  N      AG +R +   S L++ DP GF + D LA G++GH
Sbjct:    71 -------------GLAPSANRKA--TAG-LRLEARDSGLQTGDPAGFTLADTLACGTVGH 114

Query:   139 IVAYYILATSSN 150
             I+   ++    N
Sbjct:   115 IIGVGVVLGLKN 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      158       158   0.00085  106 3  11 22  0.36    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  121 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.80u 0.17s 13.97t   Elapsed:  00:00:00
  Total cpu time:  13.80u 0.17s 13.97t   Elapsed:  00:00:00
  Start:  Sat May 11 04:51:00 2013   End:  Sat May 11 04:51:00 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
