BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031508
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7N7|PSAG_ARATH Photosystem I reaction center subunit V, chloroplastic
OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1
Length = 160
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/160 (73%), Positives = 134/160 (83%), Gaps = 2/160 (1%)
Query: 1 MAASSS-LFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGIKA 58
MA S+S L +P+T + +P+SISF GLRPL + + LPKL+T+ +++S ++A
Sbjct: 1 MATSASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRA 60
Query: 59 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLK 118
ELS +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLK
Sbjct: 61 ELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLK 120
Query: 119 SNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
SNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct: 121 SNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160
>sp|P12357|PSAG_SPIOL Photosystem I reaction center subunit V, chloroplastic OS=Spinacia
oleracea GN=PSAG PE=1 SV=1
Length = 167
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/133 (73%), Positives = 106/133 (79%), Gaps = 2/133 (1%)
Query: 26 SFQGLRPLNTRAKTPLPKLATSAKRNSFG-GIKAELSTPLVISLSTGLSLFLGRFVFFNF 84
SF GLRPL + + S +AELS LVISLSTGLSLFLGRFVFFNF
Sbjct: 36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNF 95
Query: 85 QRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 144
QREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI
Sbjct: 96 QRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 154
Query: 145 LATSSNGYDPKFF 157
LAT+SNGYDP FF
Sbjct: 155 LATASNGYDPSFF 167
>sp|Q00327|PSAG_HORVU Photosystem I reaction center subunit V, chloroplastic OS=Hordeum
vulgare GN=PSAG PE=1 SV=1
Length = 143
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 89/99 (89%), Gaps = 1/99 (1%)
Query: 60 LSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKS 119
L +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+ +LKS
Sbjct: 46 LEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKS 104
Query: 120 NDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
NDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct: 105 NDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143
>sp|Q9SPM4|PSAG_TORRU Photosystem I reaction center subunit V, chloroplastic OS=Tortula
ruralis GN=PSAG PE=3 SV=1
Length = 112
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 65/93 (69%)
Query: 61 STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSN 120
+T +IS ST L LGRFVF FQR V++ GLPEQNGV + + S+LK+N
Sbjct: 17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTN 76
Query: 121 DPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 153
DP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct: 77 DPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109
>sp|P20120|PSAG_PEA Photosystem I reaction center subunit V (Fragment) OS=Pisum
sativum GN=PSAG PE=1 SV=1
Length = 39
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/39 (92%), Positives = 37/39 (94%)
Query: 59 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 97
EL+ LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct: 1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39
>sp|P14224|PSAG_CHLRE Photosystem I reaction center subunit V, chloroplastic
OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1
Length = 126
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 57 KAELSTPLVISLSTGLSLFLGRFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYV 114
KA L +VIS ST L +GRFVF +QR N P+ G T+F+ D++
Sbjct: 29 KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS-- 84
Query: 115 SLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSS 149
++ +NDP GFNI+DV WG++GH V + +LA +S
Sbjct: 85 TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119
>sp|P36886|PSAK_HORVU Photosystem I reaction center subunit psaK, chloroplastic
OS=Hordeum vulgare GN=PSAK PE=1 SV=1
Length = 131
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 23/123 (18%)
Query: 27 FQGLRPLNT-RAKTPLPKLATSAKRNSFGGIKAEL---STPLVISLSTGLSLFLGRFVFF 82
F GLR ++ R+ LP L +R GI+ + ST L++ +T L LF GRF
Sbjct: 14 FHGLRTYSSPRSMATLPSL----RRRRSQGIRCDYIGSSTNLIMVTTTTLMLFAGRF--- 66
Query: 83 NFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAY 142
GL + A+E S L++ DP GF + D LA G++GHI+
Sbjct: 67 ----------GLAPSANRKATAGLKLEARE--SGLQTGDPAGFTLADTLACGAVGHIMGV 114
Query: 143 YIL 145
I+
Sbjct: 115 GIV 117
>sp|Q9SUI5|PSAK_ARATH Photosystem I reaction center subunit psaK, chloroplastic
OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2
Length = 130
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 25/127 (19%)
Query: 27 FQGLRPLNTRAKTPLPKLATS--AKRNSFGGIKAEL-----STPLVISLSTGLSLFLGRF 79
F GLR A P+ LA+ +R G + A+ ST L++ ST L LF GRF
Sbjct: 12 FNGLRATKISAA-PVQGLASVQPMRRKGNGALGAKCDFIGSSTNLIMVTSTTLMLFAGRF 70
Query: 80 VFFNFQRENVAKQGL-PEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGH 138
GL P N +R + S L++ DP GF + D LA G++GH
Sbjct: 71 -------------GLAPSAN---RKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGH 114
Query: 139 IVAYYIL 145
I+ ++
Sbjct: 115 IIGVGVV 121
>sp|Q9ZT05|PSAK_MEDSA Photosystem I reaction center subunit psaK, chloroplastic
OS=Medicago sativa GN=PSAK PE=2 SV=1
Length = 129
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 31/147 (21%)
Query: 3 ASSSLFTPSTITVRKHQISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAEL-- 60
A+S + T T + Q+ PS I QGL A P+ T K G++ +
Sbjct: 2 ATSMMTTLPQFTGLRPQLKPSPI--QGLV-----AAQPM----TRRKGKGALGVRCDFIG 50
Query: 61 -STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGL-PEQNGVTHFEAGDVRAKEYVSLLK 118
ST +++ ST L LF GRF GL P N ++ + S L+
Sbjct: 51 SSTNVIMVASTTLMLFAGRF-------------GLAPSAN---RKATAGLKLETRDSGLQ 94
Query: 119 SNDPVGFNIVDVLAWGSIGHIVAYYIL 145
+ DP GF + D LA G++GHI+ ++
Sbjct: 95 TGDPAGFTLADTLACGTVGHIIGVGVV 121
>sp|P14225|PSAK_CHLRE Photosystem I reaction center subunit psaK, chloroplastic
OS=Chlamydomonas reinhardtii GN=PSAK PE=3 SV=1
Length = 113
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 119 SNDPVGFNIVDVLAWGSIGH 138
SNDP GF IVDVLA G+ GH
Sbjct: 78 SNDPAGFTIVDVLAMGAAGH 97
>sp|P15619|SRYC_DROME Serendipity locus protein H-1 OS=Drosophila melanogaster GN=wdn
PE=1 SV=2
Length = 869
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 1 MAASSSLFTPSTITVRKHQISPSSISFQGLRPLNTRAKTPLPKLATSA 48
+AA+SS PST+T H S S++F P N +P K ++S
Sbjct: 112 LAATSSSTVPSTLTSDNHSSSEFSVTFLRPEPPNAFTNSPFKKTSSSG 159
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus
GN=Phrf1 PE=1 SV=2
Length = 1682
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 9 TPSTITVRKHQISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAELSTP 63
TP+ + + K S+ ++ +RP + A+ PL + T KR ++ +AE STP
Sbjct: 1369 TPAVVPMTKDSPVLSARGWEAVRPRDAVAQAPLLRSRTLVKRVTWNLQEAEHSTP 1423
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,740,444
Number of Sequences: 539616
Number of extensions: 2075235
Number of successful extensions: 4811
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4795
Number of HSP's gapped (non-prelim): 14
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)