Query 031508
Match_columns 158
No_of_seqs 55 out of 57
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 15:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00091 photosystem I reactio 100.0 1.4E-69 2.9E-74 431.5 9.5 157 1-158 1-160 (160)
2 PLN00081 photosystem I reactio 100.0 2E-62 4.4E-67 384.2 7.2 132 23-157 7-141 (141)
3 TIGR03051 PS_I_psaG_plant phot 100.0 1.9E-49 4.1E-54 292.5 2.6 88 65-153 1-88 (88)
4 PLN03070 photosystem I reactio 100.0 1.3E-32 2.8E-37 214.2 6.8 114 21-151 6-126 (128)
5 PF01241 PSI_PSAK: Photosystem 99.9 7.3E-27 1.6E-31 169.4 -1.4 80 60-154 2-81 (81)
6 TIGR03050 PS_I_psaK_plant phot 99.9 1.7E-23 3.6E-28 153.4 3.4 77 60-151 4-81 (83)
7 CHL00164 psaK photosystem I su 98.4 2.2E-07 4.8E-12 69.1 3.4 67 58-151 14-83 (86)
8 TIGR03049 PS_I_psaK photosyste 97.7 2.1E-05 4.7E-10 58.0 2.2 67 59-151 10-79 (81)
9 PRK13214 photosystem I reactio 97.1 0.00016 3.4E-09 54.0 0.7 67 59-151 15-84 (86)
10 PRK13216 photosystem I reactio 95.9 0.003 6.5E-08 47.6 0.9 69 59-151 18-89 (91)
11 PF11166 DUF2951: Protein of u 50.7 13 0.00029 28.7 2.2 22 126-147 68-91 (98)
12 PRK12756 phospho-2-dehydro-3-d 42.3 11 0.00024 34.2 0.8 12 127-138 152-163 (348)
13 PF13544 N_methyl_2: Type IV p 39.0 26 0.00057 21.1 1.8 19 119-137 10-28 (31)
14 COG0722 AroG 3-deoxy-D-arabino 28.4 27 0.00058 32.1 0.9 45 94-138 110-164 (351)
15 COG1628 Endonuclease V homolog 22.7 24 0.00053 29.6 -0.4 17 116-132 74-90 (185)
16 PF11297 DUF3098: Protein of u 21.3 94 0.002 22.4 2.4 29 130-158 10-42 (69)
17 PRK12822 phospho-2-dehydro-3-d 20.9 43 0.00093 30.7 0.8 21 116-138 144-164 (356)
18 cd00223 TOPRIM_TopoIIB_SPO TOP 20.7 52 0.0011 25.2 1.1 22 115-136 55-76 (160)
No 1
>PLN00091 photosystem I reaction center subunit V (PsaG); Provisional
Probab=100.00 E-value=1.4e-69 Score=431.54 Aligned_cols=157 Identities=74% Similarity=1.114 Sum_probs=137.1
Q ss_pred CCCcCCcccCccccc-cccccCCCCccccccccCCCCCCCCCcc--cccccccCccceeeecCCCCeEEeehhHHHhhhh
Q 031508 1 MAASSSLFTPSTITV-RKHQISPSSISFQGLRPLNTRAKTPLPK--LATSAKRNSFGGIKAELSTPLVISLSTGLSLFLG 77 (158)
Q Consensus 1 ma~~~~~~~~~~~~~-~~~~~~p~~~sF~Glr~~~~~~~~~~~~--~~~~~kr~~~~~vrad~~tnlIis~ST~l~LflG 77 (158)
||+++-..+|+.++. +|||++|+..+|+||||..+........ +.+..+|++.+.+||++++++|||+||+++||||
T Consensus 1 ma~~~~~~~p~~~~~~~~~~~~~~~~sF~GLRpl~~~~~~s~~~~~~~t~~~~s~~~~~~a~l~~~~vIs~sTa~~L~LG 80 (160)
T PLN00091 1 MATSALLSTPTFSKAIHHHNLTPSSISFQGLRPLSKAKTTSLLPKISTTAPRKSSAAVVRAELNPSLVISLSTGLSLFLG 80 (160)
T ss_pred CcccccccCCccchhhhhhccCCCcccccccccccccccccccccccccccccchhheeeeccCccEEEEcchHHHHHhh
Confidence 777764444554443 4555789999999999988755443212 2334667775679999999999999999999999
Q ss_pred ccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhhhhhhccCCCCCCCC
Q 031508 78 RFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 157 (158)
Q Consensus 78 RFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~iLAt~sngy~p~~f 157 (158)
||||+|||||||+|| +|+|||+||||+||.|+||++++||||||||||||||||||||||||||+||||+||||||+||
T Consensus 81 RFVFl~fQR~~v~kq-~P~qnG~Thfeagd~ra~E~~sllksnDPaGFtiVDVlAWGSlGH~Vg~~iLAt~sngy~p~f~ 159 (160)
T PLN00091 81 RFVFFNFQRENVAKQ-VPEQNGLTHFEAGDDRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFF 159 (160)
T ss_pred ceeeeccchhhHhhh-CCCcCCceeeecccHHHHHHHhhhccCCCCcceeehhhhcchhHHHHhhhheeeccCCCCCCCC
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 031508 158 G 158 (158)
Q Consensus 158 ~ 158 (158)
|
T Consensus 160 ~ 160 (160)
T PLN00091 160 G 160 (160)
T ss_pred C
Confidence 7
No 2
>PLN00081 photosystem I reaction center subunit V (PsaG); Provisional
Probab=100.00 E-value=2e-62 Score=384.20 Aligned_cols=132 Identities=69% Similarity=1.057 Sum_probs=123.7
Q ss_pred CCccccccccCCCCCCC---CCcccccccccCccceeeecCCCCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCC
Q 031508 23 SSISFQGLRPLNTRAKT---PLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG 99 (158)
Q Consensus 23 ~~~sF~Glr~~~~~~~~---~~~~~~~~~kr~~~~~vrad~~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng 99 (158)
|.|+..|||...+++.. .+++..|+.+|++ .+||++++++|||+||+++||||||||+||||||++|| +|+|||
T Consensus 7 ~~~~~~~~~~~~~~~~~~ar~a~r~aP~~r~~v--~~rA~l~~~lvIS~St~~~L~LGRFVFlpfQR~~va~q-~P~QNG 83 (141)
T PLN00081 7 SPPSVAGLRLAPSPRVRAARVAFRAAPARRRSV--AARAELSASLVISLSTGVSLFLGRFVFFNFQRENVAKQ-VPAQNG 83 (141)
T ss_pred CCccccceecCCCcchhhhhcccccCcchhhhh--eeeeecCceEEEEcchHHHHHhhhheeehhhHHHHhhh-CCccCC
Confidence 56889999988887753 5666667677777 89999999999999999999999999999999999999 899999
Q ss_pred ceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhhhhhhccCCCCCCCC
Q 031508 100 VTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 157 (158)
Q Consensus 100 ~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~iLAt~sngy~p~~f 157 (158)
+||||+||+|+||++++||||||+|||||||||||+|||||||+||||+||||||+||
T Consensus 84 ~ThF~agd~ra~e~~~~l~tnDPaGF~ivDvlawGsiGH~vg~~iLAt~sngy~p~ff 141 (141)
T PLN00081 84 KTHFDAGDERAKEFAALLKSNDPVGFNLVDVLAWGSLGHIVAYYILATCSNGYDPNFF 141 (141)
T ss_pred cchhhhHHHHHHHHHHhhccCCCCccchhhhhhhhhhhhhhhheeeeeccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998
No 3
>TIGR03051 PS_I_psaG_plant photosystem I reaction center subunit V, chloroplast.
Probab=100.00 E-value=1.9e-49 Score=292.49 Aligned_cols=88 Identities=72% Similarity=1.074 Sum_probs=87.1
Q ss_pred EEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhhh
Q 031508 65 VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 144 (158)
Q Consensus 65 Iis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~i 144 (158)
|||+||+++||+|||||+||||+|++|| +|+|||++|++++|.|++|++|.|+||||||||||||||||||||+|||+|
T Consensus 1 vIs~ST~~~L~lGRFVflp~QR~~v~~~-~P~qnG~~~~~a~~~~a~e~~s~l~s~dpaGFtivDvlawGslgh~i~~~i 79 (88)
T TIGR03051 1 VISGSTGLFLALGRFVFLNFQRRNVAKQ-VPEQNGPKTTGATDFDALQYASLLKSNDPAGFNLVDVLAWGALGHIVAVFI 79 (88)
T ss_pred CccchhHHHHHhhhheeccchHhhhhhc-CccccCcccccchhHHHHHHhhhcccCCCCCcchhhhhhhcchhccEEEEE
Confidence 6999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCC
Q 031508 145 LATSSNGYD 153 (158)
Q Consensus 145 LAt~sngy~ 153 (158)
|||.+||||
T Consensus 80 lat~~nGy~ 88 (88)
T TIGR03051 80 LATANNGYD 88 (88)
T ss_pred EEecccCCC
Confidence 999999997
No 4
>PLN03070 photosystem I reaction center subunit psaK 247; Provisional
Probab=99.97 E-value=1.3e-32 Score=214.20 Aligned_cols=114 Identities=31% Similarity=0.443 Sum_probs=89.8
Q ss_pred CCCCccccccccCCC--CCCCCCcccccc-cccCccceeeecC---CCCeEEeehhHHHhhhhccccchhhhhhhhhcCC
Q 031508 21 SPSSISFQGLRPLNT--RAKTPLPKLATS-AKRNSFGGIKAEL---STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGL 94 (158)
Q Consensus 21 ~p~~~sF~Glr~~~~--~~~~~~~~~~~~-~kr~~~~~vrad~---~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~ 94 (158)
.+.+|||+|||+.++ .++.++++++++ .||++ ++|||| ++|+||++||+++||+|||+|+|+|++|. .+
T Consensus 6 ~~~~p~F~glr~~~~~~~~~~~~~~~~~~~~k~~~--~v~~d~igs~~nlIMi~~n~laL~iGRF~i~P~~nk~~-~~-- 80 (128)
T PLN03070 6 MTTLPQFNGLRASSAAPVKSLVAVQPMRRKGKGAL--GARCDYIGSSTNLIMVTSTTLMLFAGRFGLAPSANRKA-TA-- 80 (128)
T ss_pred ccccccccccccccccccccccccccccccCCcce--eeEeeecCCCCcEeehHHHHHHHHHHHheechhhccCC-CC--
Confidence 356999999999665 333466666553 56666 899998 99999999999999999999998876542 11
Q ss_pred CccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhh-hhhhccCC
Q 031508 95 PEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY-ILATSSNG 151 (158)
Q Consensus 95 P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~-iLAt~sng 151 (158)
| ++++.+ +++|++|||+||+++|+|||||+|||||++ ||.-++-|
T Consensus 81 ----G-~~lp~~-------~s~l~s~dpaGf~~~~~La~~s~GHiiG~G~ILGL~~~G 126 (128)
T PLN03070 81 ----G-LKLEAR-------DSGLQTGDPAGFTLADTLACGAVGHIIGVGVVLGLKNIG 126 (128)
T ss_pred ----C-ccCccc-------ccccccCCCCCcCHHHHHHhhhHHHHHHHHHHhcchhhc
Confidence 1 345554 489999999999999999999999999999 66554443
No 5
>PF01241 PSI_PSAK: Photosystem I psaG / psaK; InterPro: IPR000549 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. Photosystem I (PSI) [] is an integral membrane protein complex that uses light energy to mediate electron transfer from plastocyanin to ferredoxin. It is found in the chloroplasts of plants and cyanobacteria. PSI is composed of at least 14 different subunits, two of which, PSI-G (gene psaG) and PSI-K (gene psaK), are small hydrophobic proteins of about 7 to 9 Kd and evolutionary related []. Both seem to contain two transmembrane regions. Cyanobacteria contain only PSI-K.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0016020 membrane; PDB: 2O01_G 2WSF_G 2WSE_G 2WSC_G 3PCQ_K 1JB0_K.
Probab=99.92 E-value=7.3e-27 Score=169.38 Aligned_cols=80 Identities=45% Similarity=0.483 Sum_probs=71.5
Q ss_pred CCCCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHH
Q 031508 60 LSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHI 139 (158)
Q Consensus 60 ~~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHi 139 (158)
+.++.|++++|++.|+++|||++|+||+|+. .++|.+++ | ++|+||||+||+++|||||||+|||
T Consensus 2 sws~~v~~imi~~nl~a~~fg~~~i~~~~~g-~~lP~~~~------------~--~~l~s~~p~Gf~~~dvLA~~SlGHi 66 (81)
T PF01241_consen 2 SWSPKVAIIMIACNLFAIRFGKAPIQRPNVG-PGLPLQNP------------E--SGLASNDPAGFGLPDVLATGSLGHI 66 (81)
T ss_dssp TTTTTCHHHHHHHHHHTTCCCCTTSSSSSST-SSSSSTTT---------------TTTTTSSCHHCCTTHHHCTTSSSCC
T ss_pred CcchhHHHHHHHHHHHHHHHhheeeccCCCC-CCCCCCCc------------c--cccccCCCCCCCHHHHHHHhhHHHH
Confidence 4678999999999999999999999999995 55999998 2 7899999999999999999999999
Q ss_pred HhhhhhhhccCCCCC
Q 031508 140 VAYYILATSSNGYDP 154 (158)
Q Consensus 140 Ig~~iLAt~sngy~p 154 (158)
||++++...+|.+++
T Consensus 67 iG~g~IlGl~~~G~l 81 (81)
T PF01241_consen 67 IGAGIILGLSNIGVL 81 (81)
T ss_dssp CSSSCTTSSSTT---
T ss_pred HHHHHHHHhhhcCCC
Confidence 999999999988753
No 6
>TIGR03050 PS_I_psaK_plant photosystem I reaction center PsaK, plant form. This protein family is based on a model that separates the photosystem I PsaK subunit of chloroplasts from chloroplast PsaG protein and from Cyanobacterial PsaK, both of which show sequence similarity.
Probab=99.88 E-value=1.7e-23 Score=153.40 Aligned_cols=77 Identities=36% Similarity=0.552 Sum_probs=63.0
Q ss_pred CCCCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHH
Q 031508 60 LSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHI 139 (158)
Q Consensus 60 ~~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHi 139 (158)
.++|+||++||+++|++|||+++|+||+|... |.. . ++..+++++|||+||+++|+|||||+|||
T Consensus 4 ~~~~~IMi~~n~lal~~Grf~i~p~~~k~~~~-G~~-------l-------p~~~~~~~s~dfagf~~~~~La~~s~GHi 68 (83)
T TIGR03050 4 SSTNLIMVTSTTLMLFAGRFGLAPSANRKATA-GLK-------L-------EARESGLQTGDPAGFTLADTLACGAVGHI 68 (83)
T ss_pred CccchHHHHHHHHHHHHHHHhcchhhhcCCCC-CcC-------C-------cccccccCcCCCCCcCHHHHHHHhhHHHH
Confidence 57899999999999999999999999888633 321 1 11127899999999999999999999999
Q ss_pred Hhhh-hhhhccCC
Q 031508 140 VAYY-ILATSSNG 151 (158)
Q Consensus 140 Ig~~-iLAt~sng 151 (158)
||++ ||.-++-|
T Consensus 69 iG~g~ilGL~~~G 81 (83)
T TIGR03050 69 MGVGIVLGLKNIG 81 (83)
T ss_pred HHHHHHHhhhhhc
Confidence 9999 66544433
No 7
>CHL00164 psaK photosystem I subunit X; Validated
Probab=98.41 E-value=2.2e-07 Score=69.06 Aligned_cols=67 Identities=30% Similarity=0.457 Sum_probs=48.6
Q ss_pred ecCC--CCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhh
Q 031508 58 AELS--TPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGS 135 (158)
Q Consensus 58 ad~~--tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGs 135 (158)
-.|+ +++||.+|+.+++++|||..- ..|+.-+ +|. ++ -.||++.|+||..|
T Consensus 14 ~~Wsp~vaiIMI~cNilai~igk~~I~---~~~~Gp~-lP~----------------------~~-f~gf~l~~lLat~s 66 (86)
T CHL00164 14 SPWSASTAIIMILCNLLCIVAGRYAIQ---VRGLGPS-IPI----------------------SG-LKGFGLPELLATTS 66 (86)
T ss_pred CCcCCcceehhhHHHHHHHHHHHHHHc---CCCCCCC-CCC----------------------cc-cCCCCHHHHHHHhh
Confidence 3564 689999999999999999982 1111110 111 22 58999999999999
Q ss_pred hhHHHhhh-hhhhccCC
Q 031508 136 IGHIVAYY-ILATSSNG 151 (158)
Q Consensus 136 iGHiIg~~-iLAt~sng 151 (158)
+|||||++ ||.=++-|
T Consensus 67 ~GHIiG~G~ILGL~n~G 83 (86)
T CHL00164 67 LGHIIGAGSILGLSYVG 83 (86)
T ss_pred hHHHHHHHHHHhhhhcc
Confidence 99999999 66555444
No 8
>TIGR03049 PS_I_psaK photosystem I reaction center subunit PsaK. Members of this protein family are the PsaK of the photosystem I reaction center. Photosystems I and II occur together in the same sets of organisms. Photosystem I uses light energy to transfer electrons from plastocyanin to ferredoxin, while photosystem II uses light energy to split water and releases molecular oxygen.
Probab=97.70 E-value=2.1e-05 Score=58.00 Aligned_cols=67 Identities=31% Similarity=0.480 Sum_probs=48.6
Q ss_pred cCC--CCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhh
Q 031508 59 ELS--TPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSI 136 (158)
Q Consensus 59 d~~--tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsi 136 (158)
.|+ ..+||.+|+.+++++||+.. |..|+.-+ +|..+ -=-||++.++||..|+
T Consensus 10 ~Wsp~vaiIMI~cNilai~igk~~I---~~p~~Gp~-lP~~~----------------------~f~g~~~~~lLat~s~ 63 (81)
T TIGR03049 10 TWSPKVAIIMILCNVLAIAIGRYTI---QYPNVGPK-LPNSA----------------------FFGGFGLPELLATTSF 63 (81)
T ss_pred CcCccchhhhhHHHHHHHHHHHHHH---cCCCCCCC-CCChh----------------------hhCCCCHHHHHHHhhh
Confidence 565 47899999999999999988 33333222 33211 1138999999999999
Q ss_pred hHHHhhh-hhhhccCC
Q 031508 137 GHIVAYY-ILATSSNG 151 (158)
Q Consensus 137 GHiIg~~-iLAt~sng 151 (158)
|||+|++ ||.=++-|
T Consensus 64 GHilG~G~ILGL~~~G 79 (81)
T TIGR03049 64 GHILGVGAILGLANLG 79 (81)
T ss_pred HHHHHHHHHhhhhhhc
Confidence 9999999 66555444
No 9
>PRK13214 photosystem I reaction center subunit X; Reviewed
Probab=97.11 E-value=0.00016 Score=53.99 Aligned_cols=67 Identities=28% Similarity=0.374 Sum_probs=48.4
Q ss_pred cCCC--CeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhh
Q 031508 59 ELST--PLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSI 136 (158)
Q Consensus 59 d~~t--nlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsi 136 (158)
.|++ .+||.+|+.+.+++||+.. |..|+.-+ +|..+ -=-||.+-++||..|+
T Consensus 15 ~Wsp~vaiIMI~cNilai~igk~~I---~~p~~Gp~-lP~~~----------------------~f~g~g~~~lLat~sf 68 (86)
T PRK13214 15 EWSPKVALVMIICNIIAIAFGKATI---KYPNVGPA-LPSAN----------------------FFGGMGLGALLGTTSF 68 (86)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHHh---cCCCCCCC-CCChh----------------------hhCCCCHHHHHHHhhH
Confidence 5764 6899999999999999988 33333222 33211 0138999999999999
Q ss_pred hHHHhhh-hhhhccCC
Q 031508 137 GHIVAYY-ILATSSNG 151 (158)
Q Consensus 137 GHiIg~~-iLAt~sng 151 (158)
|||+|++ ||.=++-|
T Consensus 69 GHilG~G~ILGL~~~G 84 (86)
T PRK13214 69 GHILGAGAILGLANLG 84 (86)
T ss_pred HHHHHHHHHHhhhhhc
Confidence 9999999 66655544
No 10
>PRK13216 photosystem I reaction center subunit X-like protein; Reviewed
Probab=95.91 E-value=0.003 Score=47.64 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=48.5
Q ss_pred cCCC--CeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhh
Q 031508 59 ELST--PLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSI 136 (158)
Q Consensus 59 d~~t--nlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsi 136 (158)
.|++ .+||.+|+.+++++||+.. |..|+.-+ +|.. +.+-=.||.+..+||--|+
T Consensus 18 ~Wsp~va~IMI~cNllai~ig~~~I---~~p~~Gp~-lP~p--------------------~~~~F~g~g~~~lLat~sf 73 (91)
T PRK13216 18 TWNWTGTPIIIGSCLLVLLIAGRSI---RYPHVGPK-MPLP--------------------FPSLFNNPSVATFLAAMSF 73 (91)
T ss_pred CcCcchhHHHHHHHHHHHHHHHHHh---cCCCCCCC-CCcc--------------------chhhccCCCHHHHHHHhHH
Confidence 5654 7899999999999999988 33333222 2320 0011148999999999999
Q ss_pred hHHHhhh-hhhhccCC
Q 031508 137 GHIVAYY-ILATSSNG 151 (158)
Q Consensus 137 GHiIg~~-iLAt~sng 151 (158)
|||+|++ ||.=++-|
T Consensus 74 GHIlG~G~ILGL~~~G 89 (91)
T PRK13216 74 GHIIGVAAVLGLTNLG 89 (91)
T ss_pred HHHHHHHHHHhhhhcc
Confidence 9999999 77655544
No 11
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=50.70 E-value=13 Score=28.66 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=18.9
Q ss_pred hhhHHHhh--hhhhHHHhhhhhhh
Q 031508 126 NIVDVLAW--GSIGHIVAYYILAT 147 (158)
Q Consensus 126 tiVDVLAw--GsiGHiIg~~iLAt 147 (158)
||-|+=.| |.+|+|+|-.|+|-
T Consensus 68 nir~~KmwilGlvgTi~gsliia~ 91 (98)
T PF11166_consen 68 NIRDIKMWILGLVGTIFGSLIIAL 91 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788777 99999999999884
No 12
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=42.34 E-value=11 Score=34.24 Aligned_cols=12 Identities=50% Similarity=1.282 Sum_probs=10.7
Q ss_pred hhHHHhhhhhhH
Q 031508 127 IVDVLAWGSIGH 138 (158)
Q Consensus 127 iVDVLAwGsiGH 138 (158)
++|+++||+||.
T Consensus 152 ~~DliSwgaIGA 163 (348)
T PRK12756 152 IADLISWGAIGA 163 (348)
T ss_pred HHHHHhhhhhcc
Confidence 499999999985
No 13
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=38.95 E-value=26 Score=21.08 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=7.4
Q ss_pred cCCCCCchhhHHHhhhhhh
Q 031508 119 SNDPVGFNIVDVLAWGSIG 137 (158)
Q Consensus 119 TnDPAGFtiVDVLAwGsiG 137 (158)
.+.-.|||++.+|--=+|+
T Consensus 10 ~~~~~GFTLiEllVa~~I~ 28 (31)
T PF13544_consen 10 RRRQRGFTLIELLVAMAIL 28 (31)
T ss_dssp --------HHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHHHH
Confidence 3556899999998544443
No 14
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=28.45 E-value=27 Score=32.12 Aligned_cols=45 Identities=22% Similarity=0.463 Sum_probs=27.8
Q ss_pred CCccCCceeeeccchhhhhhh-hccccCCCCC---------chhhHHHhhhhhhH
Q 031508 94 LPEQNGVTHFEAGDVRAKEYV-SLLKSNDPVG---------FNIVDVLAWGSIGH 138 (158)
Q Consensus 94 ~P~qng~t~~eagd~ra~e~~-s~l~TnDPAG---------FtiVDVLAwGsiGH 138 (158)
-|.-||-...+.|...+.+.- .....+=|++ =-|.|.++||+||.
T Consensus 110 DP~ldgsf~i~~GL~~aR~Ll~~v~e~Glp~AtE~Ld~ispqy~aDLiSwgAIGA 164 (351)
T COG0722 110 DPDLDGSFDINKGLRIARKLLLDVNELGLPTATEFLDPISPQYLADLISWGAIGA 164 (351)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhcCCchhHHHhccCcHHHHHHHHHHhhccc
Confidence 477777666777766655542 2223333333 24789999999983
No 15
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=22.70 E-value=24 Score=29.59 Aligned_cols=17 Identities=53% Similarity=0.679 Sum_probs=13.3
Q ss_pred ccccCCCCCchhhHHHh
Q 031508 116 LLKSNDPVGFNIVDVLA 132 (158)
Q Consensus 116 ~l~TnDPAGFtiVDVLA 132 (158)
+|+.=-++|||+||+-+
T Consensus 74 lLdGIt~aGFNivDi~~ 90 (185)
T COG1628 74 LLDGITFAGFNIVDIEA 90 (185)
T ss_pred EECCeeeccceEecHHH
Confidence 45556689999999865
No 16
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=21.31 E-value=94 Score=22.44 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=19.0
Q ss_pred HHhhhhhhHHHhhhhhhhcc----CCCCCCCCC
Q 031508 130 VLAWGSIGHIVAYYILATSS----NGYDPKFFG 158 (158)
Q Consensus 130 VLAwGsiGHiIg~~iLAt~s----ngy~p~~f~ 158 (158)
.|+.|.+=-++||.+.+-.. |.|||+-|+
T Consensus 10 ll~iG~~vIilGfilMsg~~s~dp~~fn~~Ifs 42 (69)
T PF11297_consen 10 LLAIGIAVIILGFILMSGGGSDDPNVFNPDIFS 42 (69)
T ss_pred HHHHHHHHHHHHHHheeCCCCCCccccCccccc
Confidence 35667777778877665433 567777664
No 17
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.92 E-value=43 Score=30.69 Aligned_cols=21 Identities=33% Similarity=0.714 Sum_probs=14.5
Q ss_pred ccccCCCCCchhhHHHhhhhhhH
Q 031508 116 LLKSNDPVGFNIVDVLAWGSIGH 138 (158)
Q Consensus 116 ~l~TnDPAGFtiVDVLAwGsiGH 138 (158)
.|-+.+|.- ++|+++||+||.
T Consensus 144 ~ld~~~~qy--~~Dlisw~aIGA 164 (356)
T PRK12822 144 FLDTTSFPY--IADLICWGAIGA 164 (356)
T ss_pred ecccccHHH--HHHHHHhhhhcc
Confidence 344445533 399999999995
No 18
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=20.66 E-value=52 Score=25.24 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.0
Q ss_pred hccccCCCCCchhhHHHhhhhh
Q 031508 115 SLLKSNDPVGFNIVDVLAWGSI 136 (158)
Q Consensus 115 s~l~TnDPAGFtiVDVLAwGsi 136 (158)
..+-..||.|+.|..++..|+.
T Consensus 55 ~~l~D~DP~Gi~I~~~y~~gs~ 76 (160)
T cd00223 55 YILVDGDPYGISILLTYKYGSI 76 (160)
T ss_pred EEEECCCcchhhhhHHHHhCcc
Confidence 4577789999999999999875
Done!