Query 031508
Match_columns 158
No_of_seqs 55 out of 57
Neff 2.7
Searched_HMMs 29240
Date Tue Mar 26 00:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_G Photosystem I reaction 100.0 4.1E-68 1.4E-72 425.0 -1.0 145 11-157 21-167 (167)
2 2wsc_K Photosystem I reaction 100.0 6.6E-34 2.2E-38 220.9 -1.1 113 22-152 9-125 (131)
3 1jb0_K Photosystem 1 reaction 98.3 1.6E-07 5.5E-12 68.3 0.7 67 61-151 14-81 (83)
4 1of8_A Phospho-2-dehydro-3-deo 14.6 20 0.00068 31.5 -1.6 12 127-138 168-179 (370)
5 2h4p_B MENT, heterochromatin-a 10.9 31 0.0011 19.8 -1.1 13 68-80 18-30 (34)
6 3ndd_B Alpha-1-antitrypsin; se 10.8 30 0.001 20.3 -1.2 27 55-81 5-32 (36)
7 4afx_B Protein Z dependent pro 10.5 33 0.0011 20.1 -1.1 17 65-81 16-32 (36)
8 1hle_B Horse leukocyte elastas 10.4 33 0.0011 19.3 -1.1 13 68-80 17-29 (31)
9 2q2e_A Type II DNA topoisomera 10.0 41 0.0014 28.5 -1.1 23 115-137 250-272 (369)
10 1pd6_A Cardiac MYBP-C;, myosin 9.1 90 0.0031 20.1 0.6 19 16-34 2-20 (104)
No 1
>2wsc_G Photosystem I reaction center subunit V, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_G* 2wsf_G* 2o01_G* 3lw5_G*
Probab=100.00 E-value=4.1e-68 Score=424.99 Aligned_cols=145 Identities=70% Similarity=1.054 Sum_probs=94.6
Q ss_pred ccccccccccCCCCccccccccCCCCCCCCCcc--cccccccCccceeeecCCCCeEEeehhHHHhhhhccccchhhhhh
Q 031508 11 STITVRKHQISPSSISFQGLRPLNTRAKTPLPK--LATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQREN 88 (158)
Q Consensus 11 ~~~~~~~~~~~p~~~sF~Glr~~~~~~~~~~~~--~~~~~kr~~~~~vrad~~tnlIis~ST~l~LflGRFvf~p~qR~n 88 (158)
++.+++|||++|+..||+||||..+..+...++ ++++++|+. ++||||+++|||||+||+++||+|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~f~GLrp~~~~~~~~~~~~~~~~~~~r~a-~~vra~~~tnlIIs~STal~LflGRFvflP~qR~n 99 (167)
T 2wsc_G 21 PQPQQQHQHQQLKCKSFSGLRPLKLNISSNNSSSSLSMSSARRS-MTCRAELSPSLVISLSTGLSLFLGRFVFFNFQREN 99 (167)
T ss_dssp -----------------------------------------------------CCCHHHHHHHHHHHTTTTTCSSSSSSC
T ss_pred CCchhhhhccCCCcccccccccCCCCCCcccccccccccccccc-ceeEecCCCcEEEEhhhHHHHHHhhheechhhHhh
Confidence 456788999999999999999977655433333 333444544 59999999999999999999999999999999999
Q ss_pred hhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhhhhhhccCCCCCCCC
Q 031508 89 VAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 157 (158)
Q Consensus 89 v~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~iLAt~sngy~p~~f 157 (158)
++|| +|+|||++|||+||.|+||++++||||||||||||||||||||||||||+||||+||||||+||
T Consensus 100 v~kq-~P~qnG~t~feagD~ra~e~~s~l~TnDPAGFtiVDVLAwGSlGHiIg~~iLAt~sngy~p~~f 167 (167)
T 2wsc_G 100 MAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167 (167)
T ss_dssp STTS-CSSSSSCCSCCCSSCCCCCSSCCCTTSSGGGSTTHHHHTTTSSSCSCSSCCSSCSSSCCCCCCC
T ss_pred hhhc-CcccCCceeeecchhHHHHHhhhcccCCCCcchHHHHHHhhhHHHHHHHhhhhhccCCCCcccC
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999998
No 2
>2wsc_K Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_K* 2wsf_K* 3lw5_K*
Probab=99.97 E-value=6.6e-34 Score=220.90 Aligned_cols=113 Identities=33% Similarity=0.516 Sum_probs=65.7
Q ss_pred CCCccccccccCCCCCCCCCcccccccccCccceeeecC---CCCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccC
Q 031508 22 PSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAEL---STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQN 98 (158)
Q Consensus 22 p~~~sF~Glr~~~~~~~~~~~~~~~~~kr~~~~~vrad~---~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qn 98 (158)
.|+|||+|||+.+++++..+.++. ++|+. +++|||+ ++|+||++||.++|++|||+|+|+||+|. ++|.+
T Consensus 9 ~~~p~f~glr~~~~~~~~~~~~~~--~~r~~-~~~r~~~~gs~valIMi~~n~laLaiGRf~i~p~q~~~~-~~Gp~--- 81 (131)
T 2wsc_K 9 TSVPQFHGLRTYSSPRSMATLPSL--RRRRS-QGIRCDYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKA-TAGLK--- 81 (131)
T ss_dssp -------------------------------------CCTTTTTTTTHHHHHHHHHTTTGGGGTTCSCCSC-CSSSS---
T ss_pred ccCcccccccccCCcccccccccc--ccccc-eeeEeeecCCCccEEEehhHHHHHHHHHHhcchhhhccC-CCCCC---
Confidence 468999999998777655544433 23333 5999998 79999999999999999999999988885 44432
Q ss_pred CceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhh-hhhhccCCC
Q 031508 99 GVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY-ILATSSNGY 152 (158)
Q Consensus 99 g~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~-iLAt~sngy 152 (158)
++. .+++|++|||+|||++|||||||+|||||++ ||.=.+-|.
T Consensus 82 ----lp~-------~~~~~~s~dpaGF~l~dvLA~gSlGHIIG~GiILGL~~~G~ 125 (131)
T 2wsc_K 82 ----LEA-------RESGIQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGV 125 (131)
T ss_dssp ----SCC-------CCSSCSCCCTHHHHTTHHHHTTSSSTTTSSSCCCSSCTTCC
T ss_pred ----CCc-------cccccccCCCCCCCHHHHHHHhhHHHHHHHHHHHcccccCc
Confidence 222 2489999999999999999999999999998 555444343
No 3
>1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 PDB: 3pcq_K*
Probab=98.25 E-value=1.6e-07 Score=68.31 Aligned_cols=67 Identities=28% Similarity=0.377 Sum_probs=35.3
Q ss_pred CCCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHH
Q 031508 61 STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIV 140 (158)
Q Consensus 61 ~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiI 140 (158)
.+++||.+|+.+++++|||.. |..|+.-+ +|. . .++=+.||++.++||..|+||||
T Consensus 14 ~v~iIMI~cN~lai~igk~~I---~~~~~Gp~-lP~---------~-----------~~~~f~g~~~~~lLat~S~GHIl 69 (83)
T 1jb0_K 14 SVGLVVILCNLFAIALGRYAI---QSRGKGPG-LPI---------A-----------LPALFEGFGLPELLATTSFGHLL 69 (83)
T ss_dssp ------CHHHHHHHHHHHC-C---CCSSCCSC-C-------------------------------CCTTGGGHHHHHHHH
T ss_pred ccceeehhHHHHHHHHHHHHH---cCCCCCCC-CCc---------c-----------chhccCCCCHHHHHHHhhHHHHH
Confidence 468999999999999999998 21111111 111 0 12236899999999999999999
Q ss_pred hhh-hhhhccCC
Q 031508 141 AYY-ILATSSNG 151 (158)
Q Consensus 141 g~~-iLAt~sng 151 (158)
|++ ||.=++-|
T Consensus 70 G~G~ILGL~~~G 81 (83)
T 1jb0_K 70 AAGVVSGLQYAG 81 (83)
T ss_dssp HHHHTTCC----
T ss_pred HHHHHHhhhhcc
Confidence 998 66544433
No 4
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=14.59 E-value=20 Score=31.48 Aligned_cols=12 Identities=33% Similarity=0.927 Sum_probs=10.5
Q ss_pred hhHHHhhhhhhH
Q 031508 127 IVDVLAWGSIGH 138 (158)
Q Consensus 127 iVDVLAwGsiGH 138 (158)
++|+|+||+||.
T Consensus 168 v~Dllsw~aIGA 179 (370)
T 1of8_A 168 LADLVSFGAIGA 179 (370)
T ss_dssp HGGGCSEEEECT
T ss_pred HHHHHhhccccC
Confidence 499999999984
No 5
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=10.94 E-value=31 Score=19.82 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=9.7
Q ss_pred ehhHHHhhhhccc
Q 031508 68 LSTGLSLFLGRFV 80 (158)
Q Consensus 68 ~ST~l~LflGRFv 80 (158)
-.|...||+||+.
T Consensus 18 ~~t~~iLF~G~v~ 30 (34)
T 2h4p_B 18 NKSKTILFFGRFC 30 (34)
T ss_dssp TTTTEEEEEEEEC
T ss_pred CCCCeEEEEEEeC
Confidence 3466779999976
No 6
>3ndd_B Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo sapiens} PDB: 1ezx_B 3ndf_B 7api_B* 8api_B* 9api_B* 2d26_B
Probab=10.82 E-value=30 Score=20.31 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=15.8
Q ss_pred eeeecCCCCe-EEeehhHHHhhhhcccc
Q 031508 55 GIKAELSTPL-VISLSTGLSLFLGRFVF 81 (158)
Q Consensus 55 ~vrad~~tnl-Iis~ST~l~LflGRFvf 81 (158)
..+||-+==. |.--.|...||+||+.=
T Consensus 5 ~f~~drPFlf~I~~~~t~~iLF~G~v~~ 32 (36)
T 3ndd_B 5 EVKFNKPFVFLMIEQNTKSPLFMGKVVN 32 (36)
T ss_dssp EEECCSCEEEEEEETTTCCEEEEEEESS
T ss_pred EEEeeCCEEEEEEECCCCcEEEEEEecC
Confidence 3444433222 33346778899999864
No 7
>4afx_B Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_B
Probab=10.53 E-value=33 Score=20.13 Aligned_cols=17 Identities=41% Similarity=0.722 Sum_probs=12.0
Q ss_pred EEeehhHHHhhhhcccc
Q 031508 65 VISLSTGLSLFLGRFVF 81 (158)
Q Consensus 65 Iis~ST~l~LflGRFvf 81 (158)
|.--.|...||+||+.=
T Consensus 16 I~~~~t~~iLF~G~v~~ 32 (36)
T 4afx_B 16 IYEETSGMLLFLGRVVN 32 (36)
T ss_dssp EEETTTTEEEEEEEESC
T ss_pred EEECCCCcEEEEEEecC
Confidence 33346778899999863
No 8
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=10.43 E-value=33 Score=19.32 Aligned_cols=13 Identities=46% Similarity=0.690 Sum_probs=9.5
Q ss_pred ehhHHHhhhhccc
Q 031508 68 LSTGLSLFLGRFV 80 (158)
Q Consensus 68 ~ST~l~LflGRFv 80 (158)
-.|...||+||+.
T Consensus 17 ~~t~~iLF~G~v~ 29 (31)
T 1hle_B 17 NPSANILFLGRFS 29 (31)
T ss_dssp TTTTEEEEEEEEC
T ss_pred CCCCcEEEEEEec
Confidence 3467788999874
No 9
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=10.03 E-value=41 Score=28.48 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=18.6
Q ss_pred hccccCCCCCchhhHHHhhhhhh
Q 031508 115 SLLKSNDPVGFNIVDVLAWGSIG 137 (158)
Q Consensus 115 s~l~TnDPAGFtiVDVLAwGsiG 137 (158)
..+...||.||.|..+..+||+.
T Consensus 250 ~~l~D~Dp~Gi~I~~tyk~GS~~ 272 (369)
T 2q2e_A 250 AVFTDGDPWSYRIYASVAYGAIK 272 (369)
T ss_dssp EEECCSSHHHHTTTHHHHSCC--
T ss_pred EEEecCChhHHHHHHHHhccchh
Confidence 35667899999999999999976
No 10
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=9.12 E-value=90 Score=20.15 Aligned_cols=19 Identities=11% Similarity=-0.073 Sum_probs=5.8
Q ss_pred cccccCCCCccccccccCC
Q 031508 16 RKHQISPSSISFQGLRPLN 34 (158)
Q Consensus 16 ~~~~~~p~~~sF~Glr~~~ 34 (158)
+|||..|+.|....-++..
T Consensus 2 ~~~~~~~~~~~~~~p~f~~ 20 (104)
T 1pd6_A 2 HHHHHHSSMDEKKSTAFQK 20 (104)
T ss_dssp ---------CCSTTSSCSE
T ss_pred ccccccCCCCccCCCEEEE
Confidence 5788888888866555433
Done!