Your job contains 1 sequence.
>031510
MKQSKDPFEAALEESPGDSPDELEIETQPQTGTAAGSATAAVTGELEDEFDNLESQAPMS
VSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPSSSDPAKMAKMQAILNQFTEDQMNRY
ESFRRSALQKSNMRRVFIASLNSLNLVRLFMFSVTLLY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031510
(158 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2120422 - symbol:TAF11 "TBP-associated factor ... 189 1.6e-21 2
TAIR|locus:2198671 - symbol:TAF11b "TBP-associated factor... 125 2.5e-14 2
ZFIN|ZDB-GENE-040718-283 - symbol:taf11 "TAF11 RNA polyme... 99 5.1e-05 1
RGD|1562272 - symbol:RGD1562272 "similar to TAF11 RNA pol... 99 5.1e-05 1
UNIPROTKB|Q3ZBP7 - symbol:TAF11 "TAF11 RNA polymerase II,... 99 5.4e-05 1
UNIPROTKB|E2RFN3 - symbol:TAF11 "Uncharacterized protein"... 99 5.4e-05 1
UNIPROTKB|Q15544 - symbol:TAF11 "Transcription initiation... 99 5.4e-05 1
UNIPROTKB|F1RZ14 - symbol:TAF11 "Uncharacterized protein"... 99 5.4e-05 1
MGI|MGI:1916026 - symbol:Taf11 "TAF11 RNA polymerase II, ... 99 5.4e-05 1
RGD|1305626 - symbol:Taf11 "TAF11 RNA polymerase II, TATA... 99 5.4e-05 1
UNIPROTKB|E1C6Y5 - symbol:TAF11 "Uncharacterized protein"... 99 5.9e-05 1
WB|WBGene00006393 - symbol:taf-11.1 species:6239 "Caenorh... 101 9.1e-05 1
>TAIR|locus:2120422 [details] [associations]
symbol:TAF11 "TBP-associated factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IEA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0009086 "methionine biosynthetic process"
evidence=RCA] InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719
GO:GO:0005634 EMBL:CP002687 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0003743 GO:GO:0006367 HSSP:Q15544 KO:K03135 PANTHER:PTHR13218
HOGENOM:HOG000006355 OMA:MAKMQTI EMBL:AF238326 EMBL:AF370141
EMBL:AY051084 EMBL:AY463612 IPI:IPI00532915 RefSeq:NP_193761.1
UniGene:At.2189 ProteinModelPortal:Q9M565 SMR:Q9M565 IntAct:Q9M565
STRING:Q9M565 PRIDE:Q9M565 EnsemblPlants:AT4G20280.1 GeneID:827775
KEGG:ath:AT4G20280 TAIR:At4g20280 InParanoid:Q9M565
PhylomeDB:Q9M565 ProtClustDB:CLSN2682938 Genevestigator:Q9M565
Uniprot:Q9M565
Length = 210
Score = 189 (71.6 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 37/54 (68%), Positives = 45/54 (83%)
Query: 90 LGKFPSSSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLNS 143
L K+P+SSDPAKMAKMQ IL+QFTEDQM+RYESFRRSALQ+ M+++ I S
Sbjct: 90 LTKYPTSSDPAKMAKMQTILSQFTEDQMSRYESFRRSALQRPQMKKLLIGVTGS 143
Score = 77 (32.2 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 1 MKQSKDPFEAALEESPGDSPDE 22
MK SKDPFEAA+EE +SP E
Sbjct: 1 MKHSKDPFEAAIEEEQEESPPE 22
>TAIR|locus:2198671 [details] [associations]
symbol:TAF11b "TBP-associated factor 11B" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR006809
InterPro:IPR009072 Pfam:PF04719 EMBL:CP002684 GO:GO:0005634
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367 KO:K03135
PANTHER:PTHR13218 IPI:IPI00529133 RefSeq:NP_173429.1
UniGene:At.51686 ProteinModelPortal:F4HR03 SMR:F4HR03
EnsemblPlants:AT1G20000.1 GeneID:838589 KEGG:ath:AT1G20000
OMA:RVVMRER Uniprot:F4HR03
Length = 204
Score = 125 (49.1 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 95 SSSDPAKMA-KMQAILNQFTEDQMNRYESFRRSALQKSNMRRV 136
+ +DP A KMQ IL+QFTE+QM+RYESFRRS +KS+M ++
Sbjct: 88 TGADPVTRANKMQKILSQFTEEQMSRYESFRRSGFKKSDMEKL 130
Score = 72 (30.4 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 1 MKQSKDPFEAALEESPGDSPDELE 24
MK SKDPFEAA+EE +SP E E
Sbjct: 32 MKHSKDPFEAAMEEQE-ESPVETE 54
>ZFIN|ZDB-GENE-040718-283 [details] [associations]
symbol:taf11 "TAF11 RNA polymerase II, TATA box
binding protein (TBP)-associated factor" species:7955 "Danio rerio"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719
ZFIN:ZDB-GENE-040718-283 GO:GO:0005634 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0006367 KO:K03135 PANTHER:PTHR13218 CTD:6882
HOVERGEN:HBG079228 EMBL:BC076258 IPI:IPI00488284
RefSeq:NP_001002548.1 UniGene:Dr.83629 ProteinModelPortal:Q6DGT1
SMR:Q6DGT1 STRING:Q6DGT1 PRIDE:Q6DGT1 GeneID:436821 KEGG:dre:436821
InParanoid:Q6DGT1 NextBio:20831253 ArrayExpress:Q6DGT1 Bgee:Q6DGT1
Uniprot:Q6DGT1
Length = 206
Score = 99 (39.9 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 17/39 (43%), Positives = 30/39 (76%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRV 136
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+
Sbjct: 94 DEDEIQKMQVLVSSFSEEQLNRYEMYRRSAFPKAAIKRL 132
>RGD|1562272 [details] [associations]
symbol:RGD1562272 "similar to TAF11 RNA polymerase II, TATA box
binding protein (TBP)-associated factor" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001081219
Ncbi:XP_001081219
Length = 207
Score = 99 (39.9 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLNSLNL 146
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+ I S+ ++
Sbjct: 95 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL-IQSITGTSV 142
>UNIPROTKB|Q3ZBP7 [details] [associations]
symbol:TAF11 "TAF11 RNA polymerase II, TATA box binding
protein (TBP)-associated factor, 28kDa" species:9913 "Bos taurus"
[GO:0047485 "protein N-terminus binding" evidence=IEA] [GO:0046966
"thyroid hormone receptor binding" evidence=IEA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IEA]
[GO:0042809 "vitamin D receptor binding" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719
GO:GO:0003713 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367
GO:GO:0005669 GO:GO:0043923 eggNOG:COG5251 KO:K03135
PANTHER:PTHR13218 CTD:6882 GeneTree:ENSGT00390000013228
HOGENOM:HOG000006355 HOVERGEN:HBG079228 OMA:DDAHESP
OrthoDB:EOG4B8JFB EMBL:DAAA02054932 EMBL:BC103180 IPI:IPI00694509
RefSeq:NP_001029448.1 UniGene:Bt.49380 SMR:Q3ZBP7 STRING:Q3ZBP7
Ensembl:ENSBTAT00000022463 GeneID:507047 KEGG:bta:507047
InParanoid:Q3ZBP7 NextBio:20867874 Uniprot:Q3ZBP7
Length = 210
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLNSLNL 146
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+ I S+ ++
Sbjct: 98 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL-IQSITGTSV 145
>UNIPROTKB|E2RFN3 [details] [associations]
symbol:TAF11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0043923 "positive regulation by host of viral
transcription" evidence=IEA] [GO:0042809 "vitamin D receptor
binding" evidence=IEA] [GO:0005669 "transcription factor TFIID
complex" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR006809 InterPro:IPR009072
Pfam:PF04719 GO:GO:0003677 GO:GO:0003713 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0006367 GO:GO:0005669 GO:GO:0043923 KO:K03135
PANTHER:PTHR13218 CTD:6882 GeneTree:ENSGT00390000013228 OMA:DDAHESP
EMBL:AAEX03008259 RefSeq:XP_532116.1 Ensembl:ENSCAFT00000001929
GeneID:474881 KEGG:cfa:474881 NextBio:20850821 Uniprot:E2RFN3
Length = 211
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLNSLNL 146
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+ I S+ ++
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL-IQSITGTSV 146
>UNIPROTKB|Q15544 [details] [associations]
symbol:TAF11 "Transcription initiation factor TFIID subunit
11" species:9606 "Homo sapiens" [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IC;TAS] [GO:0042809 "vitamin D
receptor binding" evidence=IPI] [GO:0046966 "thyroid hormone
receptor binding" evidence=IPI] [GO:0043923 "positive regulation by
host of viral transcription" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=IDA] [GO:0005669
"transcription factor TFIID complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IC;TAS] [GO:0047485 "protein
N-terminus binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
Reactome:REACT_71 InterPro:IPR006809 InterPro:IPR009072
Pfam:PF04719 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0016032
GO:GO:0006355 GO:GO:0003677 GO:GO:0003713 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0006368 GO:GO:0003743 GO:GO:0006367
EMBL:AL033520 Reactome:REACT_1788 GO:GO:0005669 GO:GO:0043923
eggNOG:COG5251 KO:K03135 PANTHER:PTHR13218 CTD:6882 EMBL:X83928
EMBL:D63705 EMBL:AK302226 EMBL:AK313475 EMBL:CR542068 EMBL:BT019404
EMBL:BT019405 EMBL:AY217767 EMBL:BC021972 EMBL:AF118094
IPI:IPI00018110 IPI:IPI00910537 PIR:JC4540 RefSeq:NP_001257417.1
RefSeq:NP_005634.1 UniGene:Hs.112444 PDB:1BH8 PDB:1BH9 PDBsum:1BH8
PDBsum:1BH9 ProteinModelPortal:Q15544 SMR:Q15544 DIP:DIP-495N
IntAct:Q15544 STRING:Q15544 PhosphoSite:Q15544 DMDM:3024707
PRIDE:Q15544 DNASU:6882 Ensembl:ENST00000361288
Ensembl:ENST00000420584 GeneID:6882 KEGG:hsa:6882 UCSC:uc003ojw.1
GeneCards:GC06M034892 HGNC:HGNC:11544 MIM:600772 neXtProt:NX_Q15544
PharmGKB:PA36319 HOGENOM:HOG000006355 HOVERGEN:HBG079228
InParanoid:Q15544 OMA:DDAHESP OrthoDB:EOG4B8JFB PhylomeDB:Q15544
EvolutionaryTrace:Q15544 GenomeRNAi:6882 NextBio:26887
ArrayExpress:Q15544 Bgee:Q15544 CleanEx:HS_TAF11
Genevestigator:Q15544 GermOnline:ENSG00000064995 Uniprot:Q15544
Length = 211
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLNSLNL 146
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+ I S+ ++
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL-IQSITGTSV 146
>UNIPROTKB|F1RZ14 [details] [associations]
symbol:TAF11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0046966 "thyroid hormone receptor binding" evidence=IEA]
[GO:0043923 "positive regulation by host of viral transcription"
evidence=IEA] [GO:0042809 "vitamin D receptor binding"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR006809
InterPro:IPR009072 Pfam:PF04719 GO:GO:0003713 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0006367 GO:GO:0005669 GO:GO:0043923 KO:K03135
PANTHER:PTHR13218 CTD:6882 GeneTree:ENSGT00390000013228 OMA:DDAHESP
EMBL:CT797453 RefSeq:NP_001171823.1 UniGene:Ssc.3726
Ensembl:ENSSSCT00000001708 GeneID:100151814 KEGG:ssc:100151814
Uniprot:F1RZ14
Length = 211
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLNSLNL 146
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+ I S+ ++
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL-IQSITGTSV 146
>MGI|MGI:1916026 [details] [associations]
symbol:Taf11 "TAF11 RNA polymerase II, TATA box binding
protein (TBP)-associated factor" species:10090 "Mus musculus"
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005669 "transcription factor TFIID complex"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IEA] [GO:0042809 "vitamin
D receptor binding" evidence=ISO] [GO:0043923 "positive regulation
by host of viral transcription" evidence=ISO] [GO:0046966 "thyroid
hormone receptor binding" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=ISO] InterPro:IPR006809
InterPro:IPR009072 Pfam:PF04719 MGI:MGI:1916026 GO:GO:0006355
GO:GO:0003677 GO:GO:0003713 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0006367 GO:GO:0005669 GO:GO:0043923 eggNOG:COG5251 KO:K03135
PANTHER:PTHR13218 CTD:6882 GeneTree:ENSGT00390000013228
HOGENOM:HOG000006355 HOVERGEN:HBG079228 OrthoDB:EOG4B8JFB
EMBL:AK004168 EMBL:AK050689 EMBL:AK133851 EMBL:BC005603
IPI:IPI00165715 RefSeq:NP_081112.1 UniGene:Mm.267998
ProteinModelPortal:Q99JX1 SMR:Q99JX1 IntAct:Q99JX1 STRING:Q99JX1
PhosphoSite:Q99JX1 PRIDE:Q99JX1 Ensembl:ENSMUST00000025057
Ensembl:ENSMUST00000114848 GeneID:68776 KEGG:mmu:68776
InParanoid:Q99JX1 OMA:MDNLGES ChiTaRS:Taf11 NextBio:327906
Bgee:Q99JX1 Genevestigator:Q99JX1 GermOnline:ENSMUSG00000024218
Uniprot:Q99JX1
Length = 211
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLNSLNL 146
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+ I S+ ++
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL-IQSITGTSV 146
>RGD|1305626 [details] [associations]
symbol:Taf11 "TAF11 RNA polymerase II, TATA box binding protein
(TBP)-associated factor" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005669
"transcription factor TFIID complex" evidence=IEA;ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0042809 "vitamin D receptor binding"
evidence=IEA;ISO] [GO:0043923 "positive regulation by host of viral
transcription" evidence=IEA;ISO] [GO:0046966 "thyroid hormone
receptor binding" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA;ISO] InterPro:IPR006809
InterPro:IPR009072 Pfam:PF04719 RGD:1305626 GO:GO:0006355
GO:GO:0003677 GO:GO:0003713 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0006367 GO:GO:0005669 GO:GO:0043923 eggNOG:COG5251 KO:K03135
PANTHER:PTHR13218 CTD:6882 GeneTree:ENSGT00390000013228
HOGENOM:HOG000006355 HOVERGEN:HBG079228 OrthoDB:EOG4B8JFB
OMA:MDNLGES EMBL:BC086421 IPI:IPI00360451 RefSeq:NP_001008351.1
UniGene:Rn.11920 ProteinModelPortal:Q5U1X0 SMR:Q5U1X0 STRING:Q5U1X0
Ensembl:ENSRNOT00000038195 GeneID:309638 KEGG:rno:309638
UCSC:RGD:1305626 InParanoid:Q5U1X0 NextBio:661097
Genevestigator:Q5U1X0 GermOnline:ENSRNOG00000024601 Uniprot:Q5U1X0
Length = 211
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLNSLNL 146
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+ I S+ ++
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL-IQSITGTSV 146
>UNIPROTKB|E1C6Y5 [details] [associations]
symbol:TAF11 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006367 "transcription initiation from RNA polymerase
II promoter" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0005669 "transcription factor TFIID complex" evidence=IEA]
[GO:0042809 "vitamin D receptor binding" evidence=IEA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IEA]
[GO:0046966 "thyroid hormone receptor binding" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=IEA]
InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719 GO:GO:0003677
GO:GO:0003713 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367
GO:GO:0005669 KO:K03135 PANTHER:PTHR13218 CTD:6882
GeneTree:ENSGT00390000013228 EMBL:AADN02045038 IPI:IPI00604168
RefSeq:NP_001231834.1 UniGene:Gga.41847 Ensembl:ENSGALT00000004314
GeneID:419899 KEGG:gga:419899 OMA:ENKAIAM NextBio:20822889
Uniprot:E1C6Y5
Length = 217
Score = 99 (39.9 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLNSLNL 146
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+ I S+ ++
Sbjct: 105 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL-IQSITGTSV 152
>WB|WBGene00006393 [details] [associations]
symbol:taf-11.1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719 GO:GO:0005634
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367 EMBL:FO080925
HSSP:Q15544 eggNOG:COG5251 KO:K03135 PANTHER:PTHR13218
GeneTree:ENSGT00390000013228 PIR:T29243 RefSeq:NP_508727.1
ProteinModelPortal:Q20563 SMR:Q20563 STRING:Q20563 PaxDb:Q20563
EnsemblMetazoa:F48D6.1.1 EnsemblMetazoa:F48D6.1.2 GeneID:180698
KEGG:cel:CELE_F48D6.1 UCSC:F48D6.1 CTD:180698 WormBase:F48D6.1
HOGENOM:HOG000015927 InParanoid:Q20563 OMA:YRRSSFQ NextBio:910512
Uniprot:Q20563
Length = 345
Score = 101 (40.6 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLNSLNL 146
K Q +L+ F+++Q+ RYES+RRS+ QKS +RR+ +N+
Sbjct: 235 KTQVLLSNFSQEQLERYESYRRSSFQKSTIRRLISQYTGGVNV 277
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.126 0.334 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 158 127 0.00091 102 3 10 23 0.41 31
29 0.40 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 531 (57 KB)
Total size of DFA: 135 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.34u 0.20s 15.54t Elapsed: 00:00:00
Total cpu time: 15.34u 0.20s 15.54t Elapsed: 00:00:00
Start: Sat May 11 04:52:39 2013 End: Sat May 11 04:52:39 2013