BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031510
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RA91|TAF11_PONAB Transcription initiation factor TFIID subunit 11 OS=Pongo abelii
GN=TAF11 PE=2 SV=1
Length = 211
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVF 137
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLI 138
>sp|Q15544|TAF11_HUMAN Transcription initiation factor TFIID subunit 11 OS=Homo sapiens
GN=TAF11 PE=1 SV=1
Length = 211
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVF 137
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLI 138
>sp|Q5U1X0|TAF11_RAT Transcription initiation factor TFIID subunit 11 OS=Rattus
norvegicus GN=Taf11 PE=2 SV=1
Length = 211
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 102 MAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVF 137
+ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+
Sbjct: 103 IQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLI 138
>sp|Q99JX1|TAF11_MOUSE Transcription initiation factor TFIID subunit 11 OS=Mus musculus
GN=Taf11 PE=2 SV=1
Length = 211
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 102 MAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVF 137
+ KMQ +++ F+E+Q+NRYE +RRSA K+ ++R+
Sbjct: 103 IQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLI 138
>sp|P49906|TAF11_DROME Transcription initiation factor TFIID subunit 11 OS=Drosophila
melanogaster GN=Taf11 PE=1 SV=1
Length = 196
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 26/32 (81%)
Query: 105 MQAILNQFTEDQMNRYESFRRSALQKSNMRRV 136
MQ +++ FTE+Q++RYE +RRSA K+ ++R+
Sbjct: 89 MQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRL 120
>sp|Q54XM9|TAF11_DICDI Transcription initiation factor TFIID subunit 11 OS=Dictyostelium
discoideum GN=taf11 PE=3 SV=1
Length = 450
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 28/39 (71%)
Query: 105 MQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLNS 143
M ++ F+EDQ R+E ++RS+ Q++N+++V + L++
Sbjct: 344 MNTLIKHFSEDQQTRFEYYKRSSFQRANIKKVMQSVLSA 382
>sp|Q9US54|TAF11_SCHPO Transcription initiation factor TFIID subunit 11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf11 PE=3 SV=1
Length = 199
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 64 GPAAKMTMSKNKDEYD--EEDDEN------VDVELGKFPSSSDPAKMAKMQA--ILNQFT 113
P++K + N+ E + EEDD + + GK P +D K++ +L F
Sbjct: 43 APSSKEKENWNRQEENDLEEDDRDDFGTAAISKVAGK-PGETDDEANEKLRTKYLLESFD 101
Query: 114 EDQMNRYESFRRSALQKSNMRRVFIASLN 142
E+QM RYE FRR+ L K+N++++ LN
Sbjct: 102 EEQMQRYEVFRRANLNKTNVKKLANQILN 130
>sp|Q02725|VTC3_YEAST Vacuolar transporter chaperone 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=VTC3 PE=1 SV=1
Length = 835
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 40 AAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGK-----FP 94
A+V E +D DNLES V P A++ + + + + N DVE+GK FP
Sbjct: 234 ASVPNENDDFVDNLES----DVRVQPEARLNIGSKSNSLSSDGNSNQDVEIGKSKSVIFP 289
Query: 95 SSSDPA 100
S DP
Sbjct: 290 QSYDPT 295
>sp|Q9Y490|TLN1_HUMAN Talin-1 OS=Homo sapiens GN=TLN1 PE=1 SV=3
Length = 2541
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 36 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 95
G+A AVT L + ++++ A AGPA + YD+ D + V F S
Sbjct: 768 GAAATAVTQALNELLQHVKAHA---TGAGPAGR---------YDQATDTILTVTENIFSS 815
Query: 96 SSDPAKMAKMQAILNQFTEDQMN 118
D +M + IL Q T D +N
Sbjct: 816 MGDAGEMVRQARILAQATSDLVN 838
>sp|P26039|TLN1_MOUSE Talin-1 OS=Mus musculus GN=Tln1 PE=1 SV=2
Length = 2541
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 36 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 95
G+A AVT L + ++++ A AGPA + YD+ D + V F S
Sbjct: 768 GAAATAVTQALNELLQHVKAHA---TGAGPAGR---------YDQATDTILTVTENIFSS 815
Query: 96 SSDPAKMAKMQAILNQFTEDQMN 118
D +M + IL Q T D +N
Sbjct: 816 MGDAGEMVRQARILAQATSDLVN 838
>sp|Q6PEE2|CTIF_MOUSE CBP80/20-dependent translation initiation factor OS=Mus musculus
GN=Ctif PE=1 SV=2
Length = 600
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 12 LEESPGDSPDE-LEIETQPQTGTAAGS--ATAAVTGELEDEFDNLESQAPMSVSAGPAAK 68
LE+ PGD+ LE P T T A S T + G E E + ++ P + P
Sbjct: 282 LEDGPGDTGHSGLEPPCSPDTLTPAASERPTPQLPGGPEAEIKHKDTVLPERLRERPKIT 341
Query: 69 MTMSKN---KDEYDEEDDENVDVELGKFPSSSDPAKMAKMQAILN 110
+ S + E+D + V VE SS P+KM ++ ILN
Sbjct: 342 LLQSSKDRLRRRLKEKDRDEVAVET----SSPQPSKMDRLMEILN 382
>sp|A6NLC8|YE016_HUMAN Putative TAF11-like protein ENSP00000332601 OS=Homo sapiens PE=3
SV=2
Length = 198
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNM 133
+M +L+ +E+Q++RYE RRSA K+ +
Sbjct: 93 RMTTLLSAMSEEQLSRYEVCRRSAFPKACI 122
>sp|Q04226|TAF11_YEAST Transcription initiation factor TFIID subunit 11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF11 PE=1
SV=1
Length = 346
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 100 AKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRV--FIASLNSLNLVRLFMFSVTLL 157
A+ + + ++ +DQ NR+E F R++L K+ ++++ +A+ +R+F+ +V +
Sbjct: 119 AQDEQFKLLVTNLDKDQTNRFEVFHRTSLNKTQVKKLASTVANQTISENIRVFLQAVGKI 178
Query: 158 Y 158
Y
Sbjct: 179 Y 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.124 0.327
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,596,259
Number of Sequences: 539616
Number of extensions: 2042728
Number of successful extensions: 9309
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 9115
Number of HSP's gapped (non-prelim): 274
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)