Query 031510
Match_columns 158
No_of_seqs 105 out of 133
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 00:30:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_B TAFII28; histone fold, 99.7 1.9E-18 6.4E-23 125.7 1.6 45 112-157 1-45 (89)
2 3b0c_W CENP-W, centromere prot 58.4 1.6 5.5E-05 29.6 -0.6 24 126-149 3-26 (76)
3 2beq_D E2 glycoprotein; viral 51.5 13 0.00043 24.4 2.9 24 100-123 17-45 (48)
4 1mfq_C SRP54, signal recogniti 45.3 35 0.0012 25.9 5.0 26 98-123 56-84 (129)
5 3nrw_A Phage integrase/site-sp 44.4 33 0.0011 22.9 4.3 32 109-140 51-83 (117)
6 2bf9_A Pancreatic hormone; tur 41.9 29 0.00098 21.6 3.3 23 112-143 12-34 (36)
7 1bba_A Bovine pancreatic polyp 35.0 26 0.00091 21.7 2.4 23 112-143 12-34 (36)
8 1qb2_A SRP54, human signal rec 34.7 80 0.0027 23.0 5.4 26 99-124 44-72 (109)
9 2key_A Putative phage integras 34.4 50 0.0017 21.1 3.9 32 109-140 49-82 (112)
10 3fia_A Intersectin-1; EH 1 dom 32.3 81 0.0028 23.1 5.1 42 97-140 27-75 (121)
11 1b67_A Protein (histone HMFA); 31.7 23 0.00077 22.9 1.8 15 126-140 1-15 (68)
12 2qxf_A Exodeoxyribonuclease I; 31.5 41 0.0014 29.8 3.9 31 110-140 417-447 (482)
13 2kiw_A INT protein; alpha, str 30.1 78 0.0027 20.0 4.2 31 109-139 41-71 (111)
14 1f8v_D Mature capsid protein g 28.1 22 0.00075 22.6 1.1 25 132-156 6-31 (40)
15 2oxo_A Integrase; DNA-binding 27.7 91 0.0031 18.7 4.1 30 109-138 43-72 (103)
16 1ojh_A NBLA; degradation prote 27.6 50 0.0017 22.7 3.0 41 103-143 16-58 (65)
17 1dul_A Signal recognition part 27.2 49 0.0017 22.5 2.9 34 100-138 10-43 (69)
18 1wh7_A ZF-HD homeobox family p 27.2 77 0.0026 21.3 3.9 31 111-141 23-58 (80)
19 1n1j_A NF-YB; histone-like PAI 26.8 27 0.00092 24.0 1.5 17 126-142 7-23 (93)
20 2khq_A Integrase; all-alpha, s 26.7 76 0.0026 20.0 3.7 30 109-138 44-73 (110)
21 3zed_D Capsid protein VP3; vir 25.5 12 0.00039 31.6 -0.6 39 120-158 138-183 (242)
22 1n1j_B NF-YC; histone-like PAI 25.3 7.9 0.00027 27.3 -1.5 31 120-150 12-42 (97)
23 1rxq_A YFIT; nickel-binding, h 21.6 85 0.0029 21.8 3.4 35 103-142 36-70 (178)
No 1
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=99.70 E-value=1.9e-18 Score=125.69 Aligned_cols=45 Identities=29% Similarity=0.570 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHhhcCCCCCceEEEeecc
Q 031510 112 FTEDQMNRYESFRRSALQKSNMRRVFIASLNSLNLVRLFMFSVTLL 157 (158)
Q Consensus 112 FSeEQldRYE~yRRS~f~Ka~IKRLinsv~gqS~V~qnVvIAV~~~ 157 (158)
||+|||+|||.||||+|+|+.||||||+++||+ |++||+|+|++|
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~vKrl~~~~~~~~-v~~~v~i~v~gl 45 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 45 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHSSC-CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCC-CCccHHHHHHHH
Confidence 899999999999999999999999999999998 999999999876
No 2
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=58.40 E-value=1.6 Score=29.56 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=18.0
Q ss_pred ccCChHHHHHHHHHHhhcCCCCCc
Q 031510 126 SALQKSNMRRVFIASLNSLNLVRL 149 (158)
Q Consensus 126 S~f~Ka~IKRLinsv~gqS~V~qn 149 (158)
..||++.|+|||..+++...|+..
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~ 26 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAAN 26 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTT
T ss_pred CcccccHHHHHHHHhCCCCccCHH
Confidence 479999999999988765444443
No 3
>2beq_D E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1 PDB: 1zv7_A
Probab=51.54 E-value=13 Score=24.37 Aligned_cols=24 Identities=8% Similarity=0.522 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCC-----HHHHHHHHHH
Q 031510 100 AKMAKMQAILNQFT-----EDQMNRYESF 123 (158)
Q Consensus 100 ee~~km~~Lls~FS-----eEQldRYE~y 123 (158)
.++.+++.++.++. =++++|||.|
T Consensus 17 ~Ei~~Lq~~I~~LN~slIDLe~Ln~~E~y 45 (48)
T 2beq_D 17 KEIDRLNEVAKNLNESLIDLQELGKYEQY 45 (48)
T ss_dssp HHHHHHHHHHTTGGGGEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHccHHHhchhhee
Confidence 67888899998875 4899999998
No 4
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=45.35 E-value=35 Score=25.89 Aligned_cols=26 Identities=15% Similarity=0.483 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHhcCCHHHHHH---HHHH
Q 031510 98 DPAKMAKMQAILNQFTEDQMNR---YESF 123 (158)
Q Consensus 98 ~eee~~km~~Lls~FSeEQldR---YE~y 123 (158)
++.+..++.++|++||++.++. -+.+
T Consensus 56 ~e~~lkr~eaII~SMT~~Er~n~~~P~ii 84 (129)
T 1mfq_C 56 SMARLKKLMTIMDSMNDQELDSTDGAKVF 84 (129)
T ss_dssp HHHHHHHHHHHHTTSCHHHHTCTTHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHhcCCCcccc
Confidence 3456789999999999999998 7887
No 5
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=44.35 E-value=33 Score=22.86 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=25.9
Q ss_pred HhcCCHHHHHHHHHHHhc-cCChHHHHHHHHHH
Q 031510 109 LNQFTEDQMNRYESFRRS-ALQKSNMRRVFIAS 140 (158)
Q Consensus 109 ls~FSeEQldRYE~yRRS-~f~Ka~IKRLinsv 140 (158)
+..++++.+.+|-.|++. ++..++|++.+..+
T Consensus 51 l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ls~l 83 (117)
T 3nrw_A 51 MRELTGWKLDEYETFRRGSDVSPATLNGEMQTL 83 (117)
T ss_dssp GGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 457889999999999874 68998888877654
No 6
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=41.87 E-value=29 Score=21.57 Aligned_cols=23 Identities=4% Similarity=0.169 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHhhc
Q 031510 112 FTEDQMNRYESFRRSALQKSNMRRVFIASLNS 143 (158)
Q Consensus 112 FSeEQldRYE~yRRS~f~Ka~IKRLinsv~gq 143 (158)
=++|||.+|- +.+|+.||-||-|
T Consensus 12 A~~Eela~Y~---------~~LrhYiNlvTRq 34 (36)
T 2bf9_A 12 APVEDLIRFY---------NDLQQYLNVVTRH 34 (36)
T ss_dssp SCHHHHHHHH---------HHHHHHHHHHTTC
T ss_pred CCHHHHHHHH---------HHHHHHHHHHhcc
Confidence 4789999996 5899999998865
No 7
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=34.98 E-value=26 Score=21.73 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHhhc
Q 031510 112 FTEDQMNRYESFRRSALQKSNMRRVFIASLNS 143 (158)
Q Consensus 112 FSeEQldRYE~yRRS~f~Ka~IKRLinsv~gq 143 (158)
=++|||.+|- +.+|+.||-||-|
T Consensus 12 A~pEela~Y~---------~~Lr~YiNlvTRq 34 (36)
T 1bba_A 12 ATPEQMAQYA---------AELRRYINMLTRP 34 (36)
T ss_dssp SSTTHHHHHH---------HHHHHHHHHHCCC
T ss_pred CCHHHHHHHH---------HHHHHHHHHhhcc
Confidence 3789999996 5789999988865
No 8
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=34.72 E-value=80 Score=23.01 Aligned_cols=26 Identities=15% Similarity=0.474 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHH---HHHHH
Q 031510 99 PAKMAKMQAILNQFTEDQMNR---YESFR 124 (158)
Q Consensus 99 eee~~km~~Lls~FSeEQldR---YE~yR 124 (158)
+.+..++.++|++||+++++. -+.+.
T Consensus 44 ~~~lkr~~aII~SMT~~Er~~~~~P~ii~ 72 (109)
T 1qb2_A 44 MARLKKLMTIMDSMNDQELDSTDGAKVFS 72 (109)
T ss_dssp HHHHHHHHHHHTTSCHHHHHSTTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHhcCCCccccc
Confidence 456689999999999999998 77774
No 9
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=34.37 E-value=50 Score=21.12 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=23.6
Q ss_pred HhcCCHHHHHHHHHHHh--ccCChHHHHHHHHHH
Q 031510 109 LNQFTEDQMNRYESFRR--SALQKSNMRRVFIAS 140 (158)
Q Consensus 109 ls~FSeEQldRYE~yRR--S~f~Ka~IKRLinsv 140 (158)
++.+++..+.+|..|.+ .++..++|++.+..+
T Consensus 49 l~~it~~~i~~~~~~l~~~~~~s~~Ti~~~~~~l 82 (112)
T 2key_A 49 FHELTEDFLRDYLIYMKKTLCNADSTAQRNLSTI 82 (112)
T ss_dssp TTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 45678888888888865 468888888776543
No 10
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=32.26 E-value=81 Score=23.10 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHHhcCCH-------HHHHHHHHHHhccCChHHHHHHHHHH
Q 031510 97 SDPAKMAKMQAILNQFTE-------DQMNRYESFRRSALQKSNMRRVFIAS 140 (158)
Q Consensus 97 ~~eee~~km~~Lls~FSe-------EQldRYE~yRRS~f~Ka~IKRLinsv 140 (158)
-.++++.+++.+...|++ +++ -+.|++|+|++..+.+|++.+
T Consensus 27 it~ee~~~y~~iF~~lD~~dG~Isg~el--r~~~~~sgLp~~~L~~Iw~la 75 (121)
T 3fia_A 27 ITVEERAKHDQQFHSLKPISGFITGDQA--RNFFFQSGLPQPVLAQIWALA 75 (121)
T ss_dssp CCHHHHHHHHHHHHHTCCBTTBEEHHHH--HHHHGGGCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCeECHHHH--HHHHHHcCCCHHHHHHHHHHH
Confidence 356888888888888875 333 367999999999999998765
No 11
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=31.72 E-value=23 Score=22.88 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=13.6
Q ss_pred ccCChHHHHHHHHHH
Q 031510 126 SALQKSNMRRVFIAS 140 (158)
Q Consensus 126 S~f~Ka~IKRLinsv 140 (158)
..||++.|+|||..+
T Consensus 1 ~~lP~a~v~Ri~k~~ 15 (68)
T 1b67_A 1 GELPIAPIGRIIKNA 15 (68)
T ss_dssp CCSCHHHHHHHHHHT
T ss_pred CCCCccHHHHHHhcC
Confidence 369999999999998
No 12
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=31.51 E-value=41 Score=29.81 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=26.8
Q ss_pred hcCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 031510 110 NQFTEDQMNRYESFRRSALQKSNMRRVFIAS 140 (158)
Q Consensus 110 s~FSeEQldRYE~yRRS~f~Ka~IKRLinsv 140 (158)
+.+|++++.|+..||+..|...++....+.+
T Consensus 417 ~~l~~~e~~~w~~~~~~~l~~~~~~~~~~~~ 447 (482)
T 2qxf_A 417 GTLDYAEQQRWLEHRRQVFTPEFLQGYADEL 447 (482)
T ss_dssp GGCCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 4589999999999999999988787777665
No 13
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=30.06 E-value=78 Score=20.03 Aligned_cols=31 Identities=6% Similarity=0.188 Sum_probs=23.6
Q ss_pred HhcCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 031510 109 LNQFTEDQMNRYESFRRSALQKSNMRRVFIA 139 (158)
Q Consensus 109 ls~FSeEQldRYE~yRRS~f~Ka~IKRLins 139 (158)
|+.++...+.+|-.+...++..+++++++..
T Consensus 41 l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~ 71 (111)
T 2kiw_A 41 IQTIKKHDYQRFVDDISAQYSKNYVDSIVAS 71 (111)
T ss_dssp GGGCCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 5678888899998887777777777776543
No 14
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=28.08 E-value=22 Score=22.58 Aligned_cols=25 Identities=8% Similarity=-0.230 Sum_probs=10.0
Q ss_pred HHHHHHHHHhh-cCCCCCceEEEeec
Q 031510 132 NMRRVFIASLN-SLNLVRLFMFSVTL 156 (158)
Q Consensus 132 ~IKRLinsv~g-qS~V~qnVvIAV~~ 156 (158)
.||+|+++.++ -|+||-.|-++-++
T Consensus 6 rVk~ilks~l~~aS~iPGPVG~~asG 31 (40)
T 1f8v_D 6 GVLRVLNQISGTLSVIPGPVGTISAG 31 (40)
T ss_dssp HHHHHHHHTCCC--------------
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHh
Confidence 58999999998 46678777666554
No 15
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=27.72 E-value=91 Score=18.70 Aligned_cols=30 Identities=7% Similarity=-0.013 Sum_probs=20.4
Q ss_pred HhcCCHHHHHHHHHHHhccCChHHHHHHHH
Q 031510 109 LNQFTEDQMNRYESFRRSALQKSNMRRVFI 138 (158)
Q Consensus 109 ls~FSeEQldRYE~yRRS~f~Ka~IKRLin 138 (158)
|+.++...+.+|-.+.......+++++++.
T Consensus 43 l~~it~~~i~~~~~~l~~~~~~~t~~~~~~ 72 (103)
T 2oxo_A 43 LEDITTKEIAAMLNGYIDEGKAASAKLIRS 72 (103)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 456788888888887765445666665543
No 16
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=27.59 E-value=50 Score=22.65 Aligned_cols=41 Identities=5% Similarity=0.245 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCHHHHHHH--HHHHhccCChHHHHHHHHHHhhc
Q 031510 103 AKMQAILNQFTEDQMNRY--ESFRRSALQKSNMRRVFIASLNS 143 (158)
Q Consensus 103 ~km~~Lls~FSeEQldRY--E~yRRS~f~Ka~IKRLinsv~gq 143 (158)
+.++--|.++|.||...| +.||..=+..+.||.||..-.|-
T Consensus 16 ~~~~~qv~~ls~EQaqe~Lve~~rQmMikeN~~k~liK~~w~l 58 (65)
T 1ojh_A 16 RSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQWGL 58 (65)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 667779999999999998 88999999999999999887663
No 17
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=27.23 E-value=49 Score=22.52 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCChHHHHHHHH
Q 031510 100 AKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFI 138 (158)
Q Consensus 100 ee~~km~~Lls~FSeEQldRYE~yRRS~f~Ka~IKRLin 138 (158)
.+..++..++++||++.++.-+.+ +.+.++||..
T Consensus 10 ~~lkr~~aII~SMT~~Er~nP~ii-----~~SR~~RIA~ 43 (69)
T 1dul_A 10 KVLVRMEAIINSMTMKERAKPEII-----KGSRKRRIAA 43 (69)
T ss_dssp CHHHHHHHHHHTSCHHHHHCGGGC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHhCcccc-----CHHHHHHHHc
Confidence 456888999999999999864443 4455555543
No 18
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=27.19 E-value=77 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=18.3
Q ss_pred cCCHHHHHHHHHHHh-----ccCChHHHHHHHHHHh
Q 031510 111 QFTEDQMNRYESFRR-----SALQKSNMRRVFIASL 141 (158)
Q Consensus 111 ~FSeEQldRYE~yRR-----S~f~Ka~IKRLinsv~ 141 (158)
.||.+|+..-|.|.. ..+|....|.-+-.-+
T Consensus 23 ~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~l 58 (80)
T 1wh7_A 23 KFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAET 58 (80)
T ss_dssp CCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHh
Confidence 367777666666666 5566555554444444
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=26.76 E-value=27 Score=24.04 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=14.6
Q ss_pred ccCChHHHHHHHHHHhh
Q 031510 126 SALQKSNMRRVFIASLN 142 (158)
Q Consensus 126 S~f~Ka~IKRLinsv~g 142 (158)
..||++.|+|||...+.
T Consensus 7 ~~LP~a~i~ri~K~~~~ 23 (93)
T 1n1j_A 7 IYLPIANVARIMKNAIP 23 (93)
T ss_dssp CCCCHHHHHHHHHHTSC
T ss_pred ccCChhHHHHHHHHhCC
Confidence 46999999999998853
No 20
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=26.72 E-value=76 Score=20.00 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=21.5
Q ss_pred HhcCCHHHHHHHHHHHhccCChHHHHHHHH
Q 031510 109 LNQFTEDQMNRYESFRRSALQKSNMRRVFI 138 (158)
Q Consensus 109 ls~FSeEQldRYE~yRRS~f~Ka~IKRLin 138 (158)
|+.++...+.+|-.+...++..+++++++.
T Consensus 44 l~~it~~~i~~~~~~l~~~~s~~t~~~~~~ 73 (110)
T 2khq_A 44 LKDIKRTEYQKFLNEYGLTHSYETIRKLNS 73 (110)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 566788888888877766677777766544
No 21
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=25.53 E-value=12 Score=31.62 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=27.4
Q ss_pred HHHHHhccCChH----HHHHHHHHHhh---cCCCCCceEEEeeccC
Q 031510 120 YESFRRSALQKS----NMRRVFIASLN---SLNLVRLFMFSVTLLY 158 (158)
Q Consensus 120 YE~yRRS~f~Ka----~IKRLinsv~g---qS~V~qnVvIAV~~~~ 158 (158)
|+-|=+.-.+|. .||||.|+|.| |.+.|+-++=||+.+|
T Consensus 138 y~dyv~~~~~~p~~~~kirRla~svyg~p~Q~papeef~~ava~v~ 183 (242)
T 3zed_D 138 YEDYVRKPITRPTDMDKIRRLANSVYGLPHQEPAPDDFYQAVVEVF 183 (242)
T ss_pred HHHhhccccCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 344555555554 79999999998 5557887777776543
No 22
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=25.35 E-value=7.9 Score=27.27 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=15.7
Q ss_pred HHHHHhccCChHHHHHHHHHHhhcCCCCCce
Q 031510 120 YESFRRSALQKSNMRRVFIASLNSLNLVRLF 150 (158)
Q Consensus 120 YE~yRRS~f~Ka~IKRLinsv~gqS~V~qnV 150 (158)
-..|+...||-+.|||||+.--....|++..
T Consensus 12 ~~~~~~~~lP~arIkrImK~~~~~~~is~eA 42 (97)
T 1n1j_B 12 VKDFRVQELPLARIKKIMKLDEDVKMISAEA 42 (97)
T ss_dssp --------CCHHHHHHHHTTSTTCCCBCTHH
T ss_pred cCCcCCCcCCHHHHHHHHccCccccccChHH
Confidence 4568999999999999998753222344443
No 23
>1rxq_A YFIT; nickel-binding, hydrolase, helix-bundle, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Bacillus subtilis} SCOP: a.213.1.1
Probab=21.55 E-value=85 Score=21.84 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCChHHHHHHHHHHhh
Q 031510 103 AKMQAILNQFTEDQMNRYESFRRSALQKSNMRRVFIASLN 142 (158)
Q Consensus 103 ~km~~Lls~FSeEQldRYE~yRRS~f~Ka~IKRLinsv~g 142 (158)
..+..+|+.|+++|+++ +..-.+-+|+.+|..++.
T Consensus 36 ~~l~~~l~~L~~e~l~~-----~~~~~~wSi~evv~HL~~ 70 (178)
T 1rxq_A 36 AKLKQAVEVMTDSQLDT-----PYRDGGWTVRQVVHHLAD 70 (178)
T ss_dssp HHHHHHHTTCCHHHHTS-----BSSTTSCBHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHhC-----CCCCCCCCHHHHHHHHHH
Confidence 56677999999999854 344455577777766653
Done!