Query 031513
Match_columns 158
No_of_seqs 77 out of 79
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 15:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5628 Predicted acetyltransf 33.9 4.7 0.0001 32.5 -2.6 34 58-91 69-104 (143)
2 TIGR00082 rbfA ribosome-bindin 29.0 59 0.0013 24.5 2.8 17 86-102 34-50 (114)
3 PRK13816 ribosome-binding fact 26.5 66 0.0014 24.9 2.7 17 86-102 34-50 (131)
4 PF06014 DUF910: Bacterial pro 25.8 27 0.00058 24.6 0.4 16 57-72 2-17 (62)
5 PRK13818 ribosome-binding fact 25.0 76 0.0016 24.3 2.8 17 86-102 33-49 (121)
6 PRK13817 ribosome-binding fact 24.5 79 0.0017 24.1 2.7 17 86-102 33-49 (119)
7 PF10559 Plug_translocon: Plug 24.5 47 0.001 20.6 1.2 13 59-71 2-14 (35)
8 KOG3727 Mitogen inducible gene 22.1 87 0.0019 30.9 3.1 43 59-104 542-593 (664)
9 PRK13815 ribosome-binding fact 21.6 94 0.002 23.8 2.7 20 86-105 33-52 (122)
10 COG2353 Uncharacterized conser 21.1 1.3E+02 0.0028 24.7 3.5 27 85-112 105-131 (192)
No 1
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=33.89 E-value=4.7 Score=32.54 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=27.4
Q ss_pred cHHHHHhhCCCCCccceEEecccCCc--cEEEEEeE
Q 031513 58 NLFEVAQFLPNWGIGYHMAKTHWANV--SYEITKIN 91 (158)
Q Consensus 58 NLfqlLs~LP~~GVG~kVtRk~W~~~--yW~ITrVk 91 (158)
|=|-++.+..+.|||++++|+.|... -|.|--|.
T Consensus 69 ~efFIi~k~~~~GvGR~aaK~If~~~~g~w~Va~i~ 104 (143)
T COG5628 69 AEFFIVRKHRRRGVGRAAAKAIFGSAWGVWQVATVR 104 (143)
T ss_pred hheEeeehhhccchhHHHHHHHHHHhhceEEEEEec
Confidence 44668888999999999999999885 48766554
No 2
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=29.00 E-value=59 Score=24.48 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=16.1
Q ss_pred EEEEeEecCCCCceeeE
Q 031513 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAW 102 (158)
+||+|++.+|+.|-+.|
T Consensus 34 tVt~V~lS~Dl~~AkVy 50 (114)
T TIGR00082 34 TVTKVEVSKDLQHAKVF 50 (114)
T ss_pred EEeEEEECCCCCEEEEE
Confidence 79999999999999996
No 3
>PRK13816 ribosome-binding factor A; Provisional
Probab=26.50 E-value=66 Score=24.94 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=16.1
Q ss_pred EEEEeEecCCCCceeeE
Q 031513 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAW 102 (158)
+||+|++.+|+.|-+.|
T Consensus 34 tVT~V~vS~DL~~AkVy 50 (131)
T PRK13816 34 TISSVKVSPDLGYADVY 50 (131)
T ss_pred EEeEEEECCCCCeEEEE
Confidence 79999999999999996
No 4
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=25.78 E-value=27 Score=24.62 Aligned_cols=16 Identities=44% Similarity=0.777 Sum_probs=12.4
Q ss_pred CcHHHHHhhCCCCCcc
Q 031513 57 KNLFEVAQFLPNWGIG 72 (158)
Q Consensus 57 KNLfqlLs~LP~~GVG 72 (158)
|+||||.+.|-.||+=
T Consensus 2 ktlyDVqQLLK~fG~~ 17 (62)
T PF06014_consen 2 KTLYDVQQLLKKFGII 17 (62)
T ss_dssp -SHHHHHHHHHTTS--
T ss_pred CcHHHHHHHHHHCCEE
Confidence 7899999999999973
No 5
>PRK13818 ribosome-binding factor A; Provisional
Probab=25.05 E-value=76 Score=24.29 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=16.1
Q ss_pred EEEEeEecCCCCceeeE
Q 031513 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAW 102 (158)
+||+|++.+|+.|-+.|
T Consensus 33 tVt~V~lS~Dl~~AkVy 49 (121)
T PRK13818 33 TITAVECTNDLSYATVY 49 (121)
T ss_pred EEeEEEECCCCCEEEEE
Confidence 89999999999999995
No 6
>PRK13817 ribosome-binding factor A; Provisional
Probab=24.50 E-value=79 Score=24.08 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=16.1
Q ss_pred EEEEeEecCCCCceeeE
Q 031513 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAW 102 (158)
+||+|++.+|+.|-+.|
T Consensus 33 tVt~V~vS~Dl~~AkVy 49 (119)
T PRK13817 33 SLTAVSISPDLKQAKVF 49 (119)
T ss_pred EEeEEEECCCCCEEEEE
Confidence 79999999999999996
No 7
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=24.45 E-value=47 Score=20.55 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=10.9
Q ss_pred HHHHHhhCCCCCc
Q 031513 59 LFEVAQFLPNWGI 71 (158)
Q Consensus 59 LfqlLs~LP~~GV 71 (158)
||-+|++.|-+|+
T Consensus 2 lYl~ls~ipLyG~ 14 (35)
T PF10559_consen 2 LYLFLSQIPLYGL 14 (35)
T ss_dssp HHHHHHHSB-STS
T ss_pred EEEEeeCCccccc
Confidence 6788999999999
No 8
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.08 E-value=87 Score=30.92 Aligned_cols=43 Identities=30% Similarity=0.729 Sum_probs=33.2
Q ss_pred HHHHHhhCCCCCccceEEecccCC--------ccE-EEEEeEecCCCCceeeEEE
Q 031513 59 LFEVAQFLPNWGIGYHMAKTHWAN--------VSY-EITKINLYKDGKHGKAWGI 104 (158)
Q Consensus 59 LfqlLs~LP~~GVG~kVtRk~W~~--------~yW-~ITrVkl~~dg~hGKAWGi 104 (158)
..|.++.||+|||-+-+.| ... ..| +|-|+++. .|+|=|-|-.
T Consensus 542 fIQAWQSLPeFGityfivR--FkGsrKeEllGVA~NRLirmDla-tGd~iKTWRf 593 (664)
T KOG3727|consen 542 FIQAWQSLPEFGITYFIVR--FKGSRKEELLGVAYNRLIRMDLA-TGDHIKTWRF 593 (664)
T ss_pred HHHHHhhccccCcEEEEEE--ecCcchHHHHhhhhhheeeeecc-cCCceeeeee
Confidence 4678999999999999988 433 246 89999986 5888777744
No 9
>PRK13815 ribosome-binding factor A; Provisional
Probab=21.61 E-value=94 Score=23.81 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=17.5
Q ss_pred EEEEeEecCCCCceeeEEEE
Q 031513 86 EITKINLYKDGKHGKAWGIV 105 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAWGil 105 (158)
+||+|++.+|+.|-+.|=-+
T Consensus 33 tVt~V~vS~Dl~~AkVyvs~ 52 (122)
T PRK13815 33 TITGVKVTDDLHLATIYFTV 52 (122)
T ss_pred EEeEEEECCCCCEEEEEEEE
Confidence 89999999999999998433
No 10
>COG2353 Uncharacterized conserved protein [Function unknown]
Probab=21.09 E-value=1.3e+02 Score=24.65 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.0
Q ss_pred EEEEEeEecCCCCceeeEEEEeecCccC
Q 031513 85 YEITKINLYKDGKHGKAWGIVHKDGLPA 112 (158)
Q Consensus 85 W~ITrVkl~~dg~hGKAWGiltwkGk~~ 112 (158)
++-|+|+. .+...++.-|.||.+|++.
T Consensus 105 F~st~v~~-~g~~~~~v~G~LTi~GvTk 131 (192)
T COG2353 105 FTSTKVEK-TGDDTGKVTGNLTIRGVTK 131 (192)
T ss_pred EEEEEEEE-CCCCccEEEeEEEEeeecc
Confidence 78899985 4678889999999999943
Done!