Query 031513
Match_columns 158
No_of_seqs 77 out of 79
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 00:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dyj_A Ribosome-binding factor 27.2 45 0.0015 23.3 2.8 18 86-103 32-49 (95)
2 2nn4_A Hypothetical protein YQ 25.3 19 0.00065 25.1 0.5 17 56-72 2-18 (72)
3 2kzf_A RBFA, ribosome-binding 22.9 47 0.0016 23.5 2.3 18 86-103 37-54 (106)
4 1jos_A RBFA, ribosome-binding 22.1 62 0.0021 23.6 2.9 20 86-105 36-55 (128)
5 2eqj_A Metal-response element- 21.7 86 0.0029 21.4 3.3 24 68-92 13-39 (66)
6 3p8d_A Medulloblastoma antigen 21.6 82 0.0028 21.3 3.2 39 66-111 4-45 (67)
7 2e7g_A Putative ribosome-bindi 20.9 57 0.0019 23.9 2.4 19 86-104 45-63 (129)
8 2e5p_A Protein PHF1, PHD finge 17.5 1.4E+02 0.0048 20.6 3.6 26 66-92 7-35 (68)
9 1iz6_A Initiation factor 5A; S 12.2 2.1E+02 0.0073 21.1 3.7 31 80-110 20-50 (138)
10 2jv8_A Uncharacterized protein 11.9 1E+02 0.0034 21.1 1.6 28 104-135 20-49 (73)
No 1
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=27.21 E-value=45 Score=23.26 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=16.4
Q ss_pred EEEEeEecCCCCceeeEE
Q 031513 86 EITKINLYKDGKHGKAWG 103 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAWG 103 (158)
+||+|++.+|+.|-+.|=
T Consensus 32 tVt~V~vs~Dl~~AkVyv 49 (95)
T 2dyj_A 32 TVEAVRLSKDGSVLSVYV 49 (95)
T ss_dssp EEEEEEECTTSSEEEEEE
T ss_pred EEEEEEECCCCCEEEEEE
Confidence 799999999999999874
No 2
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=25.32 E-value=19 Score=25.09 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.9
Q ss_pred cCcHHHHHhhCCCCCcc
Q 031513 56 KKNLFEVAQFLPNWGIG 72 (158)
Q Consensus 56 ~KNLfqlLs~LP~~GVG 72 (158)
-+|||||.+.|-.||+=
T Consensus 2 MktlYDVqQLLK~fG~~ 18 (72)
T 2nn4_A 2 LNTFYDVQQLLKTFGHI 18 (72)
T ss_dssp CCSHHHHHHHHHTTTCC
T ss_pred cccHHHHHHHHHHCCEE
Confidence 47999999999999973
No 3
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=22.92 E-value=47 Score=23.48 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=16.2
Q ss_pred EEEEeEecCCCCceeeEE
Q 031513 86 EITKINLYKDGKHGKAWG 103 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAWG 103 (158)
+||+|++.+|+.|-+.|=
T Consensus 37 tVt~V~vs~Dl~~AkVyv 54 (106)
T 2kzf_A 37 TFSRVELSKDKRYADVYV 54 (106)
T ss_dssp CEEEEEECTTSCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEE
Confidence 799999999999998873
No 4
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=22.12 E-value=62 Score=23.65 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=17.2
Q ss_pred EEEEeEecCCCCceeeEEEE
Q 031513 86 EITKINLYKDGKHGKAWGIV 105 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAWGil 105 (158)
+||+|++.+|+.|-+.|=-+
T Consensus 36 tVt~V~vS~Dl~~AkVyvs~ 55 (128)
T 1jos_A 36 TVSDVEVSSDLSYAKIFVTF 55 (128)
T ss_dssp EEEEEEECTTSCEEEEEEEE
T ss_pred EEeEEEECCCCCEEEEEEEe
Confidence 89999999999999987433
No 5
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.73 E-value=86 Score=21.42 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=19.2
Q ss_pred CCCccceEEecccCCc-cE--EEEEeEe
Q 031513 68 NWGIGYHMAKTHWANV-SY--EITKINL 92 (158)
Q Consensus 68 ~~GVG~kVtRk~W~~~-yW--~ITrVkl 92 (158)
.|-+|.-| +.+|.++ || +|.+|+-
T Consensus 13 ~f~vGddV-LA~wtDGl~Y~gtI~~V~~ 39 (66)
T 2eqj_A 13 KFEEGQDV-LARWSDGLFYLGTIKKINI 39 (66)
T ss_dssp CSCTTCEE-EEECTTSCEEEEEEEEEET
T ss_pred cccCCCEE-EEEEccCcEEEeEEEEEcc
Confidence 67888887 6689997 56 7999984
No 6
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=21.65 E-value=82 Score=21.26 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=27.4
Q ss_pred CCCCCccceEEecccCCcc-E--EEEEeEecCCCCceeeEEEEeecCcc
Q 031513 66 LPNWGIGYHMAKTHWANVS-Y--EITKINLYKDGKHGKAWGIVHKDGLP 111 (158)
Q Consensus 66 LP~~GVG~kVtRk~W~~~y-W--~ITrVkl~~dg~hGKAWGiltwkGk~ 111 (158)
+|.|=+|.+|--+ |.++. | +|+.|. .+ |. +-+.+.+|..
T Consensus 4 ~~~~~vGd~vmAr-W~D~~yYpA~I~si~--~~---~~-Y~V~F~dG~~ 45 (67)
T 3p8d_A 4 SSEFQINEQVLAC-WSDCRFYPAKVTAVN--KD---GT-YTVKFYDGVV 45 (67)
T ss_dssp -CCCCTTCEEEEE-CTTSCEEEEEEEEEC--TT---SE-EEEEETTSCE
T ss_pred CcccccCCEEEEE-cCCCCEeeEEEEEEC--CC---Ce-EEEEEeCCce
Confidence 5789999887665 87774 6 788877 33 33 7788877764
No 7
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=20.90 E-value=57 Score=23.85 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.8
Q ss_pred EEEEeEecCCCCceeeEEE
Q 031513 86 EITKINLYKDGKHGKAWGI 104 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAWGi 104 (158)
+||+|++.+|+.|-+.|=-
T Consensus 45 tVt~V~vS~Dl~~AkVyvs 63 (129)
T 2e7g_A 45 ELSKVSLTPDFSACRAYWK 63 (129)
T ss_dssp CEEEEEECTTSCCEEEEEC
T ss_pred EEEEEEECCCCcEEEEEEE
Confidence 7999999999999998743
No 8
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.47 E-value=1.4e+02 Score=20.58 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred CCCCCccceEEecccCCc-cE--EEEEeEe
Q 031513 66 LPNWGIGYHMAKTHWANV-SY--EITKINL 92 (158)
Q Consensus 66 LP~~GVG~kVtRk~W~~~-yW--~ITrVkl 92 (158)
.|.+.+|.-|-- +|.++ || +|.+|+-
T Consensus 7 ~~~f~eGqdVLa-rWsDGlfYlGtV~kV~~ 35 (68)
T 2e5p_A 7 GPRLWEGQDVLA-RWTDGLLYLGTIKKVDS 35 (68)
T ss_dssp CCCCCTTCEEEE-ECTTSSEEEEEEEEEET
T ss_pred CcccccCCEEEE-EecCCcEEEeEEEEEec
Confidence 478889998843 69997 56 8999984
No 9
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=12.22 E-value=2.1e+02 Score=21.12 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=25.1
Q ss_pred cCCccEEEEEeEecCCCCceeeEEEEeecCc
Q 031513 80 WANVSYEITKINLYKDGKHGKAWGIVHKDGL 110 (158)
Q Consensus 80 W~~~yW~ITrVkl~~dg~hGKAWGiltwkGk 110 (158)
+....|.|.++...+-|+||.|+-.+-.++.
T Consensus 20 ~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl 50 (138)
T 1iz6_A 20 IDDEPCRIVNITVSSPGKHGSAKARIEAVGI 50 (138)
T ss_dssp ETTEEEEEEEEEECCCCTTSCCEEEEEEEET
T ss_pred ECCEEEEEEEEEeecCCCCCceEEEEEEEEC
Confidence 3445799999999888999999977776665
No 10
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=11.91 E-value=1e+02 Score=21.15 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=18.2
Q ss_pred EEeecCccCCCCCcccCCCcccce--eEccCCcc
Q 031513 104 IVHKDGLPATDAPRKISGVHKRCW--RYIPSLSK 135 (158)
Q Consensus 104 iltwkGk~~~e~~~rI~ga~Kr~W--rlvp~~~k 135 (158)
-||.+|+.++- +.++-|..| ||+|+.+-
T Consensus 20 sltingkeisy----vhdavknkwssrylpytqy 49 (73)
T 2jv8_A 20 SLTINGKEISY----VHDAVKNKWSSRYLPYTQY 49 (73)
T ss_dssp EEEETTEECCC----CCCSSSCCCCCTTSTTCCC
T ss_pred eeEECCEEeeh----HHHHHhcccccccCCchhh
Confidence 47888885533 445566666 67887763
Done!