Query 031513
Match_columns 158
No_of_seqs 77 out of 79
Neff 3.6
Searched_HMMs 13730
Date Tue Mar 26 00:34:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031513.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031513hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dyja1 d.52.7.1 (A:4-94) Ribo 38.9 10 0.00076 24.6 2.8 17 86-102 29-45 (91)
2 d1josa_ d.52.7.1 (A:) Ribosome 27.0 22 0.0016 23.1 2.9 17 86-102 30-46 (100)
3 d2eifa1 b.34.5.2 (A:1-73) Euka 22.5 46 0.0034 20.7 3.7 28 83-110 26-53 (73)
4 d1iz6a1 b.34.5.2 (A:2-70) Euka 22.4 43 0.0032 20.6 3.5 31 81-111 20-50 (69)
5 d1y0ga_ b.61.6.1 (A:) Lipid bi 20.1 45 0.0033 23.0 3.6 30 80-111 80-109 (169)
6 d2e7ga1 d.52.7.1 (A:86-201) Ri 19.8 30 0.0022 23.0 2.4 17 86-102 38-54 (116)
7 d1bkba1 b.34.5.2 (A:4-74) Euka 18.9 53 0.0038 20.3 3.4 29 83-111 25-53 (71)
8 d2nn4a1 a.272.1.1 (A:1-62) Hyp 17.0 17 0.0012 23.1 0.5 15 57-71 2-16 (62)
9 d1pa4a_ d.52.7.1 (A:) Ribosome 16.9 12 0.00088 24.6 -0.2 17 86-102 29-45 (96)
10 d2cqia1 d.58.7.1 (A:1-90) Nucl 14.7 72 0.0052 19.3 3.2 26 86-111 34-59 (90)
No 1
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]}
Probab=38.91 E-value=10 Score=24.57 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=16.1
Q ss_pred EEEEeEecCCCCceeeE
Q 031513 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAW 102 (158)
+||+|++.+|+.|.+.|
T Consensus 29 tIt~V~~S~Dl~~akVy 45 (91)
T d2dyja1 29 TVEAVRLSKDGSVLSVY 45 (91)
T ss_dssp EEEEEEECTTSSEEEEE
T ss_pred EEEEEEECCCcccEEEE
Confidence 79999999999999988
No 2
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=27.05 E-value=22 Score=23.06 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=15.8
Q ss_pred EEEEeEecCCCCceeeE
Q 031513 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAW 102 (158)
+||+|++.+|+.|-+.|
T Consensus 30 tIt~V~~S~Dl~~A~Vy 46 (100)
T d1josa_ 30 TVSDVEVSSDLSYAKIF 46 (100)
T ss_dssp EEEEEEECTTSCEEEEE
T ss_pred EEEEEEEcCCcceEEEE
Confidence 79999999999999887
No 3
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=22.49 E-value=46 Score=20.72 Aligned_cols=28 Identities=43% Similarity=0.512 Sum_probs=23.7
Q ss_pred ccEEEEEeEecCCCCceeeEEEEeecCc
Q 031513 83 VSYEITKINLYKDGKHGKAWGIVHKDGL 110 (158)
Q Consensus 83 ~yW~ITrVkl~~dg~hGKAWGiltwkGk 110 (158)
.=|.|.++...+-|+||.|.=.+..++.
T Consensus 26 ~p~~V~e~~~~kpGk~G~A~~r~k~kni 53 (73)
T d2eifa1 26 VPCEIVDISVSKPGKHGGAKARVVGIGI 53 (73)
T ss_dssp EEEEEEEEEECCCCSSSCCEEEEEEEES
T ss_pred EEEEEEEEEEECCCCcccEEEEEEEEEE
Confidence 3499999999988999999877777766
No 4
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.40 E-value=43 Score=20.55 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=25.8
Q ss_pred CCccEEEEEeEecCCCCceeeEEEEeecCcc
Q 031513 81 ANVSYEITKINLYKDGKHGKAWGIVHKDGLP 111 (158)
Q Consensus 81 ~~~yW~ITrVkl~~dg~hGKAWGiltwkGk~ 111 (158)
...-|.|.++...+-|+||.|.=.+..++..
T Consensus 20 ~g~p~~V~e~~~~kpGk~G~a~~~~k~k~i~ 50 (69)
T d1iz6a1 20 DDEPCRIVNITVSSPGKHGSAKARIEAVGIF 50 (69)
T ss_dssp TTEEEEEEEEEECCCCTTSCCEEEEEEEETT
T ss_pred CCEEEEEEEEEEEcCCCcCccEEEEEEEEcc
Confidence 3445999999998889999999888888773
No 5
>d1y0ga_ b.61.6.1 (A:) Lipid binding protein YceI {Escherichia coli [TaxId: 562]}
Probab=20.06 E-value=45 Score=23.05 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=23.5
Q ss_pred cCCccEEEEEeEecCCCCceeeEEEEeecCcc
Q 031513 80 WANVSYEITKINLYKDGKHGKAWGIVHKDGLP 111 (158)
Q Consensus 80 W~~~yW~ITrVkl~~dg~hGKAWGiltwkGk~ 111 (158)
++...++.++|.. +++...+-|.||.+|+.
T Consensus 80 ~P~i~F~s~~v~~--~~~~~~v~G~Lti~Gvt 109 (169)
T d1y0ga_ 80 YPQATFTSTSVKK--DGDELDITGDLTLNGVT 109 (169)
T ss_dssp CCEEEEEEEEEEE--ETTEEEEEEEEEETTEE
T ss_pred CceEEEEEEEEEe--cCCeEEEEEEEEEEeEE
Confidence 3334588999986 45678999999999994
No 6
>d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.84 E-value=30 Score=23.02 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=15.7
Q ss_pred EEEEeEecCCCCceeeE
Q 031513 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAW 102 (158)
+||+|++.+|+.|-+.|
T Consensus 38 tIt~V~vS~Dl~~AkVy 54 (116)
T d2e7ga1 38 ELSKVSLTPDFSACRAY 54 (116)
T ss_dssp CEEEEEECTTSCCEEEE
T ss_pred EEEEEEEcCCCcEEEEE
Confidence 79999999999999976
No 7
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=18.91 E-value=53 Score=20.33 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=24.7
Q ss_pred ccEEEEEeEecCCCCceeeEEEEeecCcc
Q 031513 83 VSYEITKINLYKDGKHGKAWGIVHKDGLP 111 (158)
Q Consensus 83 ~yW~ITrVkl~~dg~hGKAWGiltwkGk~ 111 (158)
.-|.|.++...+-|+||.|.=.+..++..
T Consensus 25 ~p~~V~~~~~~kpgk~G~a~~r~k~k~i~ 53 (71)
T d1bkba1 25 EPCRVVEIEKSKTGKHGSAKARIVAVGVF 53 (71)
T ss_dssp EEEEEEEEEEECCSTTSCCEEEEEEEETT
T ss_pred EEEEEEEEEEECCCCCCccEEEEEEEEee
Confidence 34999999998889999999888888773
No 8
>d2nn4a1 a.272.1.1 (A:1-62) Hypothetical protein YqgQ {Bacillus subtilis [TaxId: 1423]}
Probab=17.02 E-value=17 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=13.6
Q ss_pred CcHHHHHhhCCCCCc
Q 031513 57 KNLFEVAQFLPNWGI 71 (158)
Q Consensus 57 KNLfqlLs~LP~~GV 71 (158)
|+||||.+-|-.||+
T Consensus 2 ktlYDVqQLLK~fG~ 16 (62)
T d2nn4a1 2 NTFYDVQQLLKTFGH 16 (62)
T ss_dssp CSHHHHHHHHHTTTC
T ss_pred CcHHHHHHHHHHCCE
Confidence 789999999999997
No 9
>d1pa4a_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=16.86 E-value=12 Score=24.57 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=15.8
Q ss_pred EEEEeEecCCCCceeeE
Q 031513 86 EITKINLYKDGKHGKAW 102 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAW 102 (158)
+||+|++.+|+.|.+.|
T Consensus 29 tIt~V~vS~Dl~~AkVy 45 (96)
T d1pa4a_ 29 HVTHVKLSDDLLHVTVY 45 (96)
T ss_dssp CCSCCEEETTTTEEEEC
T ss_pred EEEEEEECCCCcEEEEE
Confidence 79999999999999986
No 10
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.68 E-value=72 Score=19.26 Aligned_cols=26 Identities=4% Similarity=0.004 Sum_probs=20.0
Q ss_pred EEEEeEecCCCCceeeEEEEeecCcc
Q 031513 86 EITKINLYKDGKHGKAWGIVHKDGLP 111 (158)
Q Consensus 86 ~ITrVkl~~dg~hGKAWGiltwkGk~ 111 (158)
.|.+|++..|...++-+|.++|.-..
T Consensus 34 ~i~~v~i~~d~~~~~~~afV~f~~~~ 59 (90)
T d2cqia1 34 PCKSCKMITEHTSNDPYCFVEFYEHR 59 (90)
T ss_dssp CEEEEEEECCCCSSCCEEEEEESSHH
T ss_pred CceeeeeecccCccceeeEEEECCHH
Confidence 56778877666667889999998664
Done!