BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031514
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 64 NSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQ 118
+S+P++ E G+LINVY + GL+ + + DL L V +A + SD F+
Sbjct: 222 SSVPIID----ENGYLINVYEAYDVLGLIKGGI--YNDLSLSVGEALMRRSDDFE 270
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 64 NSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQ 118
+S+P++ E G+LINVY + GL+ + + DL L V +A + SD F+
Sbjct: 43 SSVPIID----ENGYLINVYEAYDVLGLIKGGI--YNDLSLSVGEALMRRSDDFE 91
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 64 NSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQ 118
+S+P++ E G+LINVY + GL+ + + DL L V +A + SD F+
Sbjct: 215 SSVPIID----ENGYLINVYEAYDVLGLIKGGI--YNDLSLSVGEALMRRSDDFE 263
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 64 NSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQ 118
+S+P++ E G+LINVY + GL+ + + DL L V +A SD F+
Sbjct: 43 SSVPIID----ENGYLINVYEAYDVLGLIKGGI--YNDLSLSVGEALXRRSDDFE 91
>pdb|4I99|C Chain C, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
pdb|4I99|D Chain D, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
Length = 87
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 34 VDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLE 85
VD KY+EEL + V+ + ++ GT + +P V + + + FL ++LE
Sbjct: 17 VDIEKYVEELYKVVKKIYEKTGTP--IKFWDLVPDVEPKIIARTFLYLLFLE 66
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 55 GTSEASTVENSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFE 100
GT + +SL +T+E +E G++ L + C + VL++ E
Sbjct: 344 GTPDLCAFCDSLEAITIECIESGYMTGD-LARICEPAAIKVLDSIE 388
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,830,097
Number of Sequences: 62578
Number of extensions: 138885
Number of successful extensions: 455
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 18
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)