Query 031514
Match_columns 158
No_of_seqs 108 out of 760
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 15:12:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00353 HLH helix loop heli 99.4 2.8E-13 6.1E-18 85.4 4.4 47 2-48 2-52 (53)
2 cd00083 HLH Helix-loop-helix d 99.3 1.9E-12 4.2E-17 83.2 4.2 46 2-47 10-59 (60)
3 PF00010 HLH: Helix-loop-helix 99.2 1.2E-11 2.5E-16 78.9 3.9 43 2-44 7-55 (55)
4 cd04895 ACT_ACR_1 ACT domain-c 98.6 7E-07 1.5E-11 60.4 9.3 68 78-151 2-69 (72)
5 cd04897 ACT_ACR_3 ACT domain-c 98.6 8.4E-07 1.8E-11 60.5 9.3 67 79-151 3-73 (75)
6 cd04927 ACT_ACR-like_2 Second 98.5 1.3E-06 2.8E-11 59.2 9.6 69 78-152 1-73 (76)
7 cd04900 ACT_UUR-like_1 ACT dom 98.5 2E-06 4.4E-11 57.4 10.3 69 78-152 2-71 (73)
8 cd04896 ACT_ACR-like_3 ACT dom 98.4 3.6E-06 7.9E-11 57.3 9.2 65 79-150 2-72 (75)
9 cd04925 ACT_ACR_2 ACT domain-c 98.2 2.1E-05 4.6E-10 52.8 9.8 48 79-127 2-49 (74)
10 cd04928 ACT_TyrKc Uncharacteri 98.2 2E-05 4.4E-10 52.7 9.5 64 79-150 3-67 (68)
11 KOG1318 Helix loop helix trans 98.2 3.3E-06 7.1E-11 73.7 5.7 47 3-49 240-291 (411)
12 cd04899 ACT_ACR-UUR-like_2 C-t 97.9 0.00018 3.8E-09 46.8 9.5 48 79-127 2-49 (70)
13 KOG1319 bHLHZip transcription 97.9 1.2E-05 2.7E-10 63.4 4.6 55 3-57 69-131 (229)
14 cd04926 ACT_ACR_4 C-terminal 97.9 0.00013 2.9E-09 48.5 9.1 67 78-151 2-68 (72)
15 KOG4304 Transcriptional repres 97.9 7.1E-06 1.5E-10 67.6 2.2 47 2-48 38-93 (250)
16 KOG3561 Aryl-hydrocarbon recep 97.6 4.3E-05 9.3E-10 71.6 3.7 44 3-46 27-75 (803)
17 PRK00275 glnD PII uridylyl-tra 97.6 0.0007 1.5E-08 64.6 11.7 82 66-153 801-888 (895)
18 PRK05007 PII uridylyl-transfer 97.6 0.0005 1.1E-08 65.5 10.5 70 77-152 808-880 (884)
19 PRK04374 PII uridylyl-transfer 97.5 0.0011 2.3E-08 63.3 11.8 78 67-150 784-866 (869)
20 KOG3960 Myogenic helix-loop-he 97.5 0.0002 4.3E-09 58.9 5.1 53 2-54 124-179 (284)
21 PF01842 ACT: ACT domain; Int 97.4 0.0028 6E-08 40.1 9.4 38 78-116 1-38 (66)
22 PRK03381 PII uridylyl-transfer 97.4 0.0018 3.9E-08 61.0 11.6 80 67-152 588-668 (774)
23 PF13740 ACT_6: ACT domain; PD 97.3 0.0031 6.8E-08 42.3 9.0 66 77-152 2-68 (76)
24 PRK01759 glnD PII uridylyl-tra 97.3 0.0016 3.4E-08 62.0 10.1 66 78-149 784-852 (854)
25 PRK03381 PII uridylyl-transfer 97.3 0.0024 5.3E-08 60.1 10.9 75 68-150 696-772 (774)
26 cd04873 ACT_UUR-ACR-like ACT d 97.3 0.0053 1.2E-07 39.2 9.5 47 79-126 2-48 (70)
27 PRK05092 PII uridylyl-transfer 97.2 0.0034 7.4E-08 60.2 11.5 80 66-151 830-915 (931)
28 PRK01759 glnD PII uridylyl-tra 97.2 0.0034 7.3E-08 59.7 10.9 80 66-151 664-749 (854)
29 PRK05007 PII uridylyl-transfer 97.1 0.0067 1.5E-07 57.9 12.2 81 66-152 688-774 (884)
30 TIGR01693 UTase_glnD [Protein- 97.1 0.004 8.6E-08 59.1 10.4 81 66-152 655-742 (850)
31 KOG0561 bHLH transcription fac 97.0 0.00038 8.3E-09 58.7 2.5 48 3-50 67-117 (373)
32 PRK03059 PII uridylyl-transfer 97.0 0.0073 1.6E-07 57.5 11.1 58 68-126 775-834 (856)
33 PRK03059 PII uridylyl-transfer 97.0 0.0067 1.5E-07 57.8 10.6 79 66-151 665-750 (856)
34 cd04893 ACT_GcvR_1 ACT domains 96.9 0.014 2.9E-07 39.3 9.0 65 78-152 2-67 (77)
35 KOG2483 Upstream transcription 96.9 0.0015 3.3E-08 53.3 4.5 50 3-52 66-119 (232)
36 PRK00275 glnD PII uridylyl-tra 96.9 0.0093 2E-07 57.1 10.4 70 76-151 703-778 (895)
37 COG2844 GlnD UTP:GlnB (protein 96.8 0.0058 1.3E-07 57.6 8.4 79 66-151 778-858 (867)
38 TIGR01693 UTase_glnD [Protein- 96.8 0.011 2.5E-07 56.0 10.6 76 68-149 768-848 (850)
39 PRK00194 hypothetical protein; 96.7 0.011 2.3E-07 40.5 7.3 65 77-149 3-68 (90)
40 PRK05092 PII uridylyl-transfer 96.7 0.017 3.6E-07 55.5 10.7 79 67-151 720-805 (931)
41 cd04869 ACT_GcvR_2 ACT domains 96.6 0.045 9.8E-07 36.3 9.7 64 80-152 2-72 (81)
42 PRK04374 PII uridylyl-transfer 96.5 0.017 3.8E-07 55.1 9.6 71 76-152 689-761 (869)
43 cd04870 ACT_PSP_1 CT domains f 96.5 0.039 8.5E-07 36.6 8.6 63 80-151 2-65 (75)
44 cd04872 ACT_1ZPV ACT domain pr 96.5 0.024 5.3E-07 38.7 7.7 67 78-152 2-69 (88)
45 cd04875 ACT_F4HF-DF N-terminal 96.4 0.063 1.4E-06 35.3 9.4 64 80-151 2-68 (74)
46 PF13291 ACT_4: ACT domain; PD 96.2 0.11 2.4E-06 34.5 9.6 39 78-117 7-47 (80)
47 KOG4029 Transcription factor H 96.1 0.0056 1.2E-07 49.5 3.5 52 3-54 116-172 (228)
48 COG2844 GlnD UTP:GlnB (protein 95.7 0.072 1.6E-06 50.5 9.2 74 70-150 677-751 (867)
49 PLN03217 transcription factor 95.7 0.019 4E-07 40.1 4.0 49 9-57 20-75 (93)
50 cd04886 ACT_ThrD-II-like C-ter 95.5 0.11 2.4E-06 32.8 7.0 34 80-114 1-34 (73)
51 cd04887 ACT_MalLac-Enz ACT_Mal 95.4 0.16 3.5E-06 32.9 7.7 35 80-115 2-36 (74)
52 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.9 0.33 7.1E-06 31.0 8.1 36 78-114 1-36 (79)
53 PRK13010 purU formyltetrahydro 94.8 0.22 4.7E-06 41.9 8.7 69 77-152 9-80 (289)
54 cd04894 ACT_ACR-like_1 ACT dom 94.8 0.19 4.2E-06 33.2 6.5 65 79-149 2-67 (69)
55 PRK06027 purU formyltetrahydro 94.6 0.37 8.1E-06 40.3 9.6 68 77-152 6-76 (286)
56 cd04876 ACT_RelA-SpoT ACT dom 94.5 0.26 5.7E-06 29.8 6.6 35 80-115 1-35 (71)
57 cd04888 ACT_PheB-BS C-terminal 94.3 0.29 6.4E-06 31.7 6.8 35 79-114 2-36 (76)
58 PRK04435 hypothetical protein; 93.9 0.43 9.3E-06 36.1 7.9 43 73-116 65-108 (147)
59 cd04909 ACT_PDH-BS C-terminal 93.9 0.6 1.3E-05 29.8 7.6 36 78-114 2-37 (69)
60 cd04883 ACT_AcuB C-terminal AC 93.9 0.67 1.5E-05 29.7 7.8 36 78-114 2-37 (72)
61 cd04877 ACT_TyrR N-terminal AC 93.7 0.35 7.6E-06 31.8 6.3 37 79-117 2-38 (74)
62 PRK13011 formyltetrahydrofolat 93.7 0.85 1.8E-05 38.2 9.9 66 77-151 7-75 (286)
63 cd04880 ACT_AAAH-PDT-like ACT 93.6 0.43 9.3E-06 31.3 6.6 36 80-116 2-37 (75)
64 cd02116 ACT ACT domains are co 93.5 0.22 4.8E-06 28.5 4.6 35 80-115 1-35 (60)
65 PRK08577 hypothetical protein; 93.5 0.93 2E-05 33.5 8.9 47 68-115 43-93 (136)
66 cd04889 ACT_PDH-BS-like C-term 93.3 0.51 1.1E-05 29.0 6.2 45 80-125 1-46 (56)
67 cd04874 ACT_Af1403 N-terminal 93.3 1 2.2E-05 28.2 7.7 36 79-115 2-37 (72)
68 TIGR00655 PurU formyltetrahydr 93.2 0.87 1.9E-05 38.1 9.2 64 79-150 2-68 (280)
69 cd04905 ACT_CM-PDT C-terminal 92.9 1.6 3.6E-05 28.9 8.6 36 79-115 3-38 (80)
70 COG3830 ACT domain-containing 92.5 0.4 8.7E-06 33.7 5.3 67 78-152 4-71 (90)
71 KOG2588 Predicted DNA-binding 92.3 0.051 1.1E-06 52.0 0.8 52 4-55 284-337 (953)
72 cd04903 ACT_LSD C-terminal ACT 92.0 1.6 3.4E-05 27.1 7.3 33 80-113 2-34 (71)
73 KOG3560 Aryl-hydrocarbon recep 91.9 0.11 2.3E-06 47.4 2.3 37 5-41 34-75 (712)
74 KOG3558 Hypoxia-inducible fact 91.9 0.091 2E-06 48.9 1.8 38 4-41 54-96 (768)
75 cd04908 ACT_Bt0572_1 N-termina 91.8 0.72 1.6E-05 29.5 5.6 37 79-116 3-39 (66)
76 cd04879 ACT_3PGDH-like ACT_3PG 91.4 1.2 2.5E-05 27.6 6.2 42 80-122 2-45 (71)
77 KOG3559 Transcriptional regula 91.3 0.16 3.5E-06 44.9 2.7 40 3-42 8-52 (598)
78 cd04882 ACT_Bt0572_2 C-termina 91.3 1.8 3.9E-05 26.8 7.0 35 80-115 2-36 (65)
79 cd04878 ACT_AHAS N-terminal AC 91.2 2.1 4.6E-05 26.5 7.4 35 79-114 2-36 (72)
80 PRK11589 gcvR glycine cleavage 90.6 0.97 2.1E-05 35.8 6.3 64 76-149 7-71 (190)
81 cd04904 ACT_AAAH ACT domain of 90.5 1.2 2.7E-05 29.4 5.9 36 80-116 3-38 (74)
82 PRK00227 glnD PII uridylyl-tra 90.5 1.8 3.9E-05 40.7 8.9 72 75-153 544-616 (693)
83 cd04884 ACT_CBS C-terminal ACT 90.0 2.3 5.1E-05 27.4 6.9 34 80-114 2-35 (72)
84 PRK11152 ilvM acetolactate syn 89.0 5.4 0.00012 27.0 8.2 37 78-115 4-40 (76)
85 PRK06737 acetolactate synthase 88.7 3.6 7.8E-05 27.9 7.1 37 78-115 3-39 (76)
86 PRK13562 acetolactate synthase 88.6 3 6.4E-05 29.0 6.7 46 79-125 4-51 (84)
87 TIGR00119 acolac_sm acetolacta 87.5 4.4 9.5E-05 31.2 7.8 36 79-115 3-38 (157)
88 cd04931 ACT_PAH ACT domain of 87.5 3.8 8.1E-05 28.5 6.8 38 78-116 15-52 (90)
89 cd04932 ACT_AKiii-LysC-EC_1 AC 86.6 7.3 0.00016 25.9 8.2 66 79-156 3-71 (75)
90 PF05088 Bac_GDH: Bacterial NA 86.6 5.2 0.00011 40.9 9.7 73 77-155 489-566 (1528)
91 PRK07334 threonine dehydratase 86.5 3.8 8.3E-05 35.6 7.9 36 78-114 327-362 (403)
92 PRK11895 ilvH acetolactate syn 86.3 4.8 0.0001 31.1 7.5 44 78-122 3-48 (161)
93 cd04929 ACT_TPH ACT domain of 85.5 4.4 9.6E-05 27.0 6.1 35 81-116 4-38 (74)
94 PRK11589 gcvR glycine cleavage 84.6 18 0.00039 28.6 11.5 64 78-150 96-166 (190)
95 cd04885 ACT_ThrD-I Tandem C-te 84.4 5.7 0.00012 25.5 6.2 32 81-114 2-33 (68)
96 PF13710 ACT_5: ACT domain; PD 83.7 7.2 0.00016 25.1 6.4 27 89-115 3-29 (63)
97 cd04902 ACT_3PGDH-xct C-termin 83.5 4.2 9.1E-05 25.7 5.2 43 80-123 2-46 (73)
98 KOG4447 Transcription factor T 83.3 0.64 1.4E-05 35.9 1.3 44 2-45 84-130 (173)
99 CHL00100 ilvH acetohydroxyacid 82.7 10 0.00022 29.7 8.0 65 78-151 3-69 (174)
100 COG0788 PurU Formyltetrahydrof 82.5 11 0.00024 31.7 8.5 68 76-151 6-76 (287)
101 cd04930 ACT_TH ACT domain of t 82.0 7.1 0.00015 28.4 6.5 37 78-115 42-78 (115)
102 cd04901 ACT_3PGDH C-terminal A 81.7 1.6 3.5E-05 27.5 2.7 41 80-121 2-42 (69)
103 PRK10872 relA (p)ppGpp synthet 72.2 32 0.00069 32.8 9.3 36 78-114 667-702 (743)
104 PRK08178 acetolactate synthase 72.0 33 0.00071 24.4 7.8 46 77-123 8-55 (96)
105 COG4747 ACT domain-containing 71.0 20 0.00043 26.8 6.1 44 79-123 5-48 (142)
106 PRK11899 prephenate dehydratas 70.5 32 0.0007 28.7 8.2 38 78-116 195-232 (279)
107 TIGR00691 spoT_relA (p)ppGpp s 70.3 36 0.00078 32.0 9.2 39 78-117 611-650 (683)
108 KOG3910 Helix loop helix trans 69.6 5.1 0.00011 36.5 3.3 48 3-50 533-585 (632)
109 cd04890 ACT_AK-like_1 ACT doma 69.6 20 0.00043 22.1 5.3 34 86-121 12-45 (62)
110 PF02120 Flg_hook: Flagellar h 69.6 17 0.00036 24.0 5.2 46 69-114 29-79 (85)
111 cd04892 ACT_AK-like_2 ACT doma 69.5 21 0.00046 21.2 7.3 34 79-113 2-38 (65)
112 PF02344 Myc-LZ: Myc leucine z 69.3 4.8 0.0001 22.9 2.0 16 5-20 14-29 (32)
113 KOG4447 Transcription factor T 69.2 6.8 0.00015 30.3 3.5 44 4-47 30-79 (173)
114 PRK11092 bifunctional (p)ppGpp 68.4 44 0.00096 31.7 9.4 37 78-115 627-663 (702)
115 PRK14627 hypothetical protein; 68.3 27 0.00058 24.8 6.2 44 34-87 4-47 (100)
116 cd04922 ACT_AKi-HSDH-ThrA_2 AC 67.5 26 0.00056 21.5 7.7 34 79-113 3-39 (66)
117 PRK14626 hypothetical protein; 67.2 27 0.00059 25.2 6.2 45 33-87 7-51 (110)
118 PRK14623 hypothetical protein; 65.3 32 0.00069 24.8 6.2 45 33-87 3-47 (106)
119 PRK14625 hypothetical protein; 64.3 34 0.00073 24.8 6.2 45 33-87 4-48 (109)
120 PRK14622 hypothetical protein; 64.3 33 0.00072 24.5 6.1 45 33-87 3-47 (103)
121 TIGR00103 DNA_YbaB_EbfC DNA-bi 62.7 37 0.0008 24.1 6.1 45 33-87 7-51 (102)
122 cd04933 ACT_AK1-AT_1 ACT domai 62.4 41 0.00088 22.6 6.0 41 79-121 3-46 (78)
123 COG0077 PheA Prephenate dehydr 61.5 53 0.0012 27.7 7.7 65 77-149 194-259 (279)
124 PRK00153 hypothetical protein; 60.5 43 0.00093 23.6 6.1 25 33-57 5-29 (104)
125 KOG3898 Transcription factor N 59.2 5.4 0.00012 33.0 1.4 45 3-47 79-127 (254)
126 PRK14621 hypothetical protein; 59.1 45 0.00097 24.2 6.1 45 33-87 6-50 (111)
127 cd04937 ACT_AKi-DapG-BS_2 ACT 57.5 45 0.00097 20.8 7.6 22 86-108 13-34 (64)
128 cd04912 ACT_AKiii-LysC-EC-like 57.5 43 0.00094 21.7 5.4 31 79-110 3-36 (75)
129 PRK14629 hypothetical protein; 57.0 51 0.0011 23.5 5.9 43 35-87 7-49 (99)
130 PRK08198 threonine dehydratase 55.7 79 0.0017 27.3 8.2 36 77-113 327-362 (404)
131 PRK14624 hypothetical protein; 55.3 58 0.0012 23.8 6.1 45 33-87 8-52 (115)
132 PRK06382 threonine dehydratase 55.1 63 0.0014 28.1 7.5 34 78-112 331-364 (406)
133 cd04935 ACT_AKiii-DAPDC_1 ACT 55.0 58 0.0013 21.4 5.8 34 85-120 12-45 (75)
134 COG3978 Acetolactate synthase 54.9 69 0.0015 22.2 7.7 45 78-123 4-51 (86)
135 cd04868 ACT_AK-like ACT domain 53.9 41 0.00089 19.3 4.6 25 89-113 14-38 (60)
136 PRK03762 hypothetical protein; 53.8 66 0.0014 23.0 6.1 45 33-87 7-51 (103)
137 TIGR01127 ilvA_1Cterm threonin 53.7 87 0.0019 26.7 8.1 34 78-112 306-339 (380)
138 PRK11898 prephenate dehydratas 53.2 1.1E+02 0.0023 25.6 8.2 38 78-116 197-235 (283)
139 PRK00587 hypothetical protein; 51.8 70 0.0015 22.7 6.0 44 33-87 3-46 (99)
140 cd04906 ACT_ThrD-I_1 First of 50.9 72 0.0016 21.3 6.9 30 78-110 2-31 (85)
141 PRK10820 DNA-binding transcrip 50.5 45 0.00096 30.1 6.0 42 79-121 2-43 (520)
142 COG4492 PheB ACT domain-contai 50.5 35 0.00075 26.0 4.4 39 77-116 72-111 (150)
143 cd04911 ACT_AKiii-YclM-BS_1 AC 48.5 36 0.00078 23.0 3.9 33 89-122 15-47 (76)
144 PRK10622 pheA bifunctional cho 47.6 1.3E+02 0.0028 26.4 8.2 37 79-116 299-335 (386)
145 PRK15385 magnesium transport p 47.1 1.6E+02 0.0034 24.1 8.3 39 76-115 141-181 (225)
146 cd04934 ACT_AK-Hom3_1 CT domai 46.0 84 0.0018 20.6 6.0 39 80-120 4-45 (73)
147 cd04918 ACT_AK1-AT_2 ACT domai 45.4 76 0.0016 19.9 6.2 26 89-114 14-39 (65)
148 PF04508 Pox_A_type_inc: Viral 44.7 26 0.00057 18.5 2.1 16 40-55 3-18 (23)
149 cd04916 ACT_AKiii-YclM-BS_2 AC 44.7 71 0.0015 19.4 7.7 33 79-112 3-38 (66)
150 PRK00227 glnD PII uridylyl-tra 44.6 44 0.00096 31.6 5.1 61 77-151 631-691 (693)
151 cd04919 ACT_AK-Hom3_2 ACT doma 42.5 79 0.0017 19.3 7.8 27 86-113 13-39 (66)
152 COG0317 SpoT Guanosine polypho 42.3 89 0.0019 29.8 6.7 38 78-116 628-665 (701)
153 PF13840 ACT_7: ACT domain ; P 42.3 87 0.0019 19.9 4.9 32 78-110 7-42 (65)
154 cd04915 ACT_AK-Ectoine_2 ACT d 41.8 90 0.002 19.8 6.1 26 89-114 15-40 (66)
155 PRK06349 homoserine dehydrogen 40.5 1.7E+02 0.0037 25.7 8.0 38 76-114 347-384 (426)
156 KOG4395 Transcription factor A 40.5 34 0.00074 28.6 3.3 45 3-47 181-229 (285)
157 PRK14126 cell division protein 38.2 77 0.0017 21.7 4.3 47 9-55 34-82 (85)
158 TIGR01268 Phe4hydrox_tetr phen 37.4 1E+02 0.0023 27.6 6.1 37 78-115 17-53 (436)
159 PF09849 DUF2076: Uncharacteri 37.1 76 0.0017 26.2 4.9 49 7-55 5-72 (247)
160 COG1076 DjlA DnaJ-domain-conta 37.1 24 0.00052 27.2 1.9 48 7-54 123-170 (174)
161 cd04923 ACT_AK-LysC-DapG-like_ 36.5 94 0.002 18.4 7.4 23 89-111 14-36 (63)
162 cd04920 ACT_AKiii-DAPDC_2 ACT 35.8 88 0.0019 19.6 4.1 24 86-110 12-35 (63)
163 COG2716 GcvR Glycine cleavage 35.6 1.7E+02 0.0037 23.1 6.3 63 77-148 92-161 (176)
164 PRK14628 hypothetical protein; 35.5 1.7E+02 0.0038 21.3 6.1 45 33-87 21-65 (118)
165 TIGR02263 benz_CoA_red_C benzo 35.3 2.2E+02 0.0049 24.5 7.8 90 6-115 172-269 (380)
166 COG0440 IlvH Acetolactate synt 34.8 1.8E+02 0.0039 22.6 6.3 65 79-152 6-72 (163)
167 smart00338 BRLZ basic region l 34.4 36 0.00077 21.7 2.1 19 38-56 26-44 (65)
168 PF00170 bZIP_1: bZIP transcri 34.3 36 0.00078 21.6 2.1 19 37-55 25-43 (64)
169 cd04913 ACT_AKii-LysC-BS-like_ 33.6 1.1E+02 0.0025 18.6 6.0 27 85-112 10-36 (75)
170 PRK08210 aspartate kinase I; R 32.4 2.1E+02 0.0046 24.7 7.2 37 76-112 270-306 (403)
171 PF02700 PurS: Phosphoribosylf 32.4 1.5E+02 0.0033 20.0 5.0 42 79-121 2-48 (80)
172 PRK11790 D-3-phosphoglycerate 32.2 99 0.0021 27.1 5.1 56 67-123 328-383 (409)
173 PF11619 P53_C: Transcription 32.1 65 0.0014 21.4 3.0 33 68-101 6-39 (71)
174 PF14689 SPOB_a: Sensor_kinase 31.8 54 0.0012 20.9 2.6 41 5-51 17-57 (62)
175 cd04924 ACT_AK-Arch_2 ACT doma 31.7 1.2E+02 0.0026 18.2 7.7 33 79-112 3-38 (66)
176 COG4747 ACT domain-containing 30.9 70 0.0015 24.0 3.3 28 80-108 72-99 (142)
177 COG2061 ACT-domain-containing 30.3 75 0.0016 24.7 3.5 36 78-114 6-41 (170)
178 PRK07431 aspartate kinase; Pro 29.5 4.1E+02 0.0089 24.2 8.8 65 71-150 342-409 (587)
179 COG3474 Cytochrome c2 [Energy 29.0 61 0.0013 24.5 2.8 35 9-43 91-130 (135)
180 PRK08526 threonine dehydratase 28.8 3.2E+02 0.007 23.8 7.7 36 77-113 326-361 (403)
181 PRK13581 D-3-phosphoglycerate 28.6 2.4E+02 0.0051 25.6 7.0 47 76-123 451-499 (526)
182 PF14197 Cep57_CLD_2: Centroso 28.5 85 0.0018 20.7 3.2 26 31-56 40-65 (69)
183 PRK08210 aspartate kinase I; R 28.3 3.9E+02 0.0084 23.0 8.5 37 71-108 333-372 (403)
184 PRK06545 prephenate dehydrogen 27.8 1.6E+02 0.0034 25.1 5.5 37 78-115 291-327 (359)
185 PF13805 Pil1: Eisosome compon 27.7 1.1E+02 0.0025 25.6 4.5 37 4-53 143-180 (271)
186 PRK09034 aspartate kinase; Rev 27.6 4.4E+02 0.0095 23.4 8.6 42 71-113 379-423 (454)
187 COG3283 TyrR Transcriptional r 27.5 1.4E+02 0.0031 26.7 5.2 42 79-121 2-43 (511)
188 cd04891 ACT_AK-LysC-DapG-like_ 27.0 1.3E+02 0.0029 17.3 6.4 28 85-113 9-36 (61)
189 PF06005 DUF904: Protein of un 26.7 79 0.0017 21.1 2.8 22 33-54 13-34 (72)
190 PRK06635 aspartate kinase; Rev 26.5 3.4E+02 0.0074 23.3 7.5 40 76-115 261-300 (404)
191 PF14992 TMCO5: TMCO5 family 26.5 77 0.0017 26.8 3.3 28 28-55 138-168 (280)
192 PRK09084 aspartate kinase III; 26.5 2.9E+02 0.0062 24.5 7.1 35 76-111 305-342 (448)
193 cd04921 ACT_AKi-HSDH-ThrA-like 26.3 1.8E+02 0.0039 18.5 7.8 26 86-112 13-38 (80)
194 PF12180 EABR: TSG101 and ALIX 25.8 79 0.0017 18.4 2.2 13 38-50 23-35 (35)
195 PF04083 Abhydro_lipase: Parti 25.8 1.7E+02 0.0037 18.8 4.2 30 97-126 3-32 (63)
196 PF09006 Surfac_D-trimer: Lung 25.7 38 0.00083 20.9 1.0 19 40-58 1-19 (46)
197 TIGR01270 Trp_5_monoox tryptop 25.3 1.3E+02 0.0029 27.2 4.7 37 78-115 32-68 (464)
198 PF10369 ALS_ss_C: Small subun 25.3 2.1E+02 0.0045 18.9 5.6 43 78-126 5-47 (75)
199 PF01709 Transcrip_reg: Transc 22.7 1.9E+02 0.0041 23.4 4.9 34 80-116 167-200 (234)
200 PRK05974 phosphoribosylformylg 22.7 2.4E+02 0.0052 18.7 5.1 34 79-113 2-40 (80)
201 cd04936 ACT_AKii-LysC-BS-like_ 22.5 1.8E+02 0.0039 17.1 5.9 26 86-112 12-37 (63)
202 TIGR00656 asp_kin_monofn aspar 22.3 4.7E+02 0.01 22.4 7.5 37 75-112 258-297 (401)
203 PLN02551 aspartokinase 22.2 2.9E+02 0.0063 25.2 6.4 34 77-111 366-402 (521)
204 PF06305 DUF1049: Protein of u 21.8 1.1E+02 0.0023 19.3 2.6 18 39-56 49-66 (68)
205 PF15235 GRIN_C: G protein-reg 21.5 99 0.0022 23.4 2.7 23 32-56 67-89 (137)
206 KOG2123 Uncharacterized conser 21.4 64 0.0014 28.0 1.8 28 12-39 107-138 (388)
207 PF13224 DUF4032: Domain of un 20.6 2E+02 0.0043 22.4 4.3 35 92-126 21-58 (165)
208 COG3074 Uncharacterized protei 20.4 1.5E+02 0.0033 20.0 3.1 23 33-55 13-35 (79)
209 TIGR01124 ilvA_2Cterm threonin 20.3 5.8E+02 0.013 23.0 7.9 33 76-111 324-356 (499)
210 COG1828 PurS Phosphoribosylfor 20.2 2.2E+02 0.0048 19.6 4.0 43 78-121 2-49 (83)
211 PRK06291 aspartate kinase; Pro 20.0 6.2E+02 0.013 22.4 9.3 35 77-112 321-358 (465)
No 1
>smart00353 HLH helix loop helix domain.
Probab=99.41 E-value=2.8e-13 Score=85.43 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=43.1
Q ss_pred chhHhHHHHHHHhhHHhhcC-CC---CCCCcccchhhHHHHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDV-TN---STSMNKTSIVVDASKYIEELKQQVE 48 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl-~~---~~K~DKaSIl~dAI~YIk~Lq~~v~ 48 (158)
..||+||++||+.|..|+++ |+ ..|+||++||..||+||+.|+.+++
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999 52 6789999999999999999999875
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.32 E-value=1.9e-12 Score=83.20 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=42.4
Q ss_pred chhHhHHHHHHHhhHHhhcC-CCC---CCCcccchhhHHHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDV-TNS---TSMNKTSIVVDASKYIEELKQQV 47 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl-~~~---~K~DKaSIl~dAI~YIk~Lq~~v 47 (158)
.+||+||.+||..|..|+++ |+. .|+||++||..||+||+.|+.++
T Consensus 10 ~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 10 LRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999 544 89999999999999999999876
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.22 E-value=1.2e-11 Score=78.91 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=39.2
Q ss_pred chhHhHHHHHHHhhHHhhcC-CCC-----CCCcccchhhHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDV-TNS-----TSMNKTSIVVDASKYIEELK 44 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl-~~~-----~K~DKaSIl~dAI~YIk~Lq 44 (158)
..||+||.+||+.|..|+.+ |+. .|+||++||..||+||++||
T Consensus 7 ~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 7 ERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 46999999999999999999 533 68999999999999999997
No 4
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.59 E-value=7e-07 Score=60.40 Aligned_cols=68 Identities=13% Similarity=0.232 Sum_probs=56.9
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
..|.|.++.+ ||+|.+|..+|..+||+|..|.|+|.++...++|-+... ++.+++...-.+.|.++|.
T Consensus 2 Tviev~a~DR-pGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-----~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARK-PGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-----LGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCc-CCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-----CCCCCCCHHHHHHHHHHhc
Confidence 3689999999 999999999999999999999999999999999988765 5667765555556666553
No 5
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.57 E-value=8.4e-07 Score=60.47 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=56.1
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCH----HHHHHHHHHHHH
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDA----QVVKEAVLQAIK 151 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~vk~al~~ai~ 151 (158)
.|.|.|+.+ ||+|.+|..+|-++|++|.+|.|+|.++...+++-+... ++.+++. +.++++|..++.
T Consensus 3 vveV~~~DR-pGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-----~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDR-PKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-----DGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCc-CcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC-----CCCccCCHHHHHHHHHHHHHHHh
Confidence 589999999 999999999999999999999999999999998888765 4666643 356666666654
No 6
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.54 E-value=1.3e-06 Score=59.21 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=53.7
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee-eCCeEEEEEeccccccccCCCCCCC---HHHHHHHHHHHHHh
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDRFQLEAVGGDFLQHIEGHADGID---AQVVKEAVLQAIKN 152 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~-~~~~~l~~~~~~~~~~~~~~~~~~~---~~~vk~al~~ai~~ 152 (158)
+.+.|.|+.+ ||+|.++..+|..+||+|.+|.+++ .+|..++++.+... ++...+ .+.++++|.+++++
T Consensus 1 ~~~ei~~~Dr-~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-----~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 1 FLLKLFCSDR-KGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-----RELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred CEEEEEECCC-CCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-----CCCCCCHHHHHHHHHHHHHHHch
Confidence 4689999999 9999999999999999999999997 78999999988664 222222 23355566555543
No 7
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.53 E-value=2e-06 Score=57.37 Aligned_cols=69 Identities=22% Similarity=0.356 Sum_probs=53.9
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee-CCeEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHh
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS-DRFQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKN 152 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~ 152 (158)
..|.|.|+.+ ||+|.++..+|..+||+|.+|.+.+. +|+.++++.+... ++......+-.+.+.+.|.+
T Consensus 2 ~~i~v~~~Dr-~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-----~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDR-PGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-----DGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCC-CCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-----CCCCCChHHHHHHHHHHHHh
Confidence 3688999999 99999999999999999999999888 6899999987654 34445444444555555543
No 8
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.41 E-value=3.6e-06 Score=57.33 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=53.1
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEe--eeCCeEEEEEeccccccccCCCCCCCH----HHHHHHHHHHH
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS--CSDRFQLEAVGGDFLQHIEGHADGIDA----QVVKEAVLQAI 150 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs--~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~vk~al~~ai 150 (158)
.|.|.|+.| ||+|.+|..+|..+||+|..|.|+ |.+....++|.+ .. ++..++. ..++++|..++
T Consensus 2 vlev~a~DR-pGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-----~g~kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 2 LLQIRCVDQ-KGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-----DGKKIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEEEeCCc-ccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-----CCCccCCHHHHHHHHHHHHHHh
Confidence 578999999 999999999999999999999999 999999999988 43 3545543 35556665554
No 9
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.24 E-value=2.1e-05 Score=52.78 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=44.1
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEecccc
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFL 127 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~ 127 (158)
.|.|.++.+ ||+|.+|..+|..+|++|..|.+++.+|..+.++.+...
T Consensus 2 ~~~v~~~Dr-~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~ 49 (74)
T cd04925 2 AIELTGTDR-PGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE 49 (74)
T ss_pred EEEEEECCC-CCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC
Confidence 578999999 999999999999999999999999999988888877653
No 10
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.23 E-value=2e-05 Score=52.68 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=54.5
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee-CCeEEEEEeccccccccCCCCCCCHHHHHHHHHHHH
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS-DRFQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAI 150 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai 150 (158)
.|-|.|+.+ ||+|.++..+|..+||+|+.|++.+. +|+.+.++.+... ..=++..+.++|..++
T Consensus 3 eI~V~~~Dr-~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-------~~~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDK-PKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-------KRGETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCC-cchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-------CccchHHHHHHHHHhh
Confidence 578999999 99999999999999999999999975 7899999988753 3445677888888775
No 11
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.16 E-value=3.3e-06 Score=73.67 Aligned_cols=47 Identities=19% Similarity=0.370 Sum_probs=41.6
Q ss_pred hhHhHHHHHHHhhHHhhcCCCC-----CCCcccchhhHHHHHHHHHHHHHHH
Q 031514 3 SREQNKAALYEKLMLLRDVTNS-----TSMNKTSIVVDASKYIEELKQQVET 49 (158)
Q Consensus 3 sER~RR~kln~~~~~LRsl~~~-----~K~DKaSIl~dAI~YIk~Lq~~v~~ 49 (158)
-|||||++||+++..|-.|+|. .|..|.+||..+.+||++||+..+.
T Consensus 240 VERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 240 VERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999552 3667999999999999999988774
No 12
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.94 E-value=0.00018 Score=46.76 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=43.1
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEecccc
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFL 127 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~ 127 (158)
.|.|.++.+ +|+|.+|+.+|.++++++.++++.+.+++.+..+.+...
T Consensus 2 ~l~v~~~d~-~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~ 49 (70)
T cd04899 2 VLELTALDR-PGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA 49 (70)
T ss_pred EEEEEEcCC-ccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC
Confidence 588999999 999999999999999999999999988888887776554
No 13
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=97.94 E-value=1.2e-05 Score=63.42 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=46.6
Q ss_pred hhHhHHHHHHHhhHHhhcCCC-CC-------CCcccchhhHHHHHHHHHHHHHHHHHHhhccC
Q 031514 3 SREQNKAALYEKLMLLRDVTN-ST-------SMNKTSIVVDASKYIEELKQQVETLNQEIGTS 57 (158)
Q Consensus 3 sER~RR~kln~~~~~LRsl~~-~~-------K~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (158)
+||+||+.||.-+..|..|+| .+ |..||-||..+|+||..|.++..+-+.+...+
T Consensus 69 aEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 69 AEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999965 22 67799999999999999998887777665443
No 14
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.94 E-value=0.00013 Score=48.52 Aligned_cols=67 Identities=25% Similarity=0.291 Sum_probs=51.7
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
..|.|.++.+ +|+|.+|..+|.++|++|+++.+.+.++..+.++.+... ++...+. ...+.+.++|.
T Consensus 2 tri~V~~~D~-~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-----~~~~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDR-VGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-----NGNPVDP-KTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCc-cCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-----CCCcCCH-HHHHHHHHHhc
Confidence 4678899999 999999999999999999999999998877777766543 2333444 34455666654
No 15
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.87 E-value=7.1e-06 Score=67.59 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=41.2
Q ss_pred chhHhHHHHHHHhhHHhhcCCC---------CCCCcccchhhHHHHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDVTN---------STSMNKTSIVVDASKYIEELKQQVE 48 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~---------~~K~DKaSIl~dAI~YIk~Lq~~v~ 48 (158)
+-||+||.|||+-|..|+.|++ .+|++||=||.=|++|++.|+..-.
T Consensus 38 l~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 38 LLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 3599999999999999999953 2689999999999999999987653
No 16
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.63 E-value=4.3e-05 Score=71.58 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=40.3
Q ss_pred hhHhHHHHHHHhhHHhhcCCC--C---CCCcccchhhHHHHHHHHHHHH
Q 031514 3 SREQNKAALYEKLMLLRDVTN--S---TSMNKTSIVVDASKYIEELKQQ 46 (158)
Q Consensus 3 sER~RR~kln~~~~~LRsl~~--~---~K~DKaSIl~dAI~YIk~Lq~~ 46 (158)
+|||||++||..+..|-+++| . -|+||.+||..||.+|+.+++.
T Consensus 27 ~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 27 IEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 699999999999999999954 4 7999999999999999988774
No 17
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.62 E-value=0.0007 Score=64.63 Aligned_cols=82 Identities=11% Similarity=0.132 Sum_probs=64.4
Q ss_pred CCeEEEEEec--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCH----
Q 031514 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDA---- 139 (158)
Q Consensus 66 ~p~V~V~~~~--~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~---- 139 (158)
.|.|.+.... +...|.|.++.+ ||+|.+|..+|..+||+|.+|.|+|.+|.+++++.+... ++..++.
T Consensus 801 ~~~V~i~~~~~~~~T~i~V~a~Dr-pGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-----~g~~l~~~~~~ 874 (895)
T PRK00275 801 PTQVTISNDAQRPVTVLEIIAPDR-PGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-----DNQPLSDPQLC 874 (895)
T ss_pred CCEEEEEECCCCCeEEEEEEECCC-CCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-----CCCCCCCHHHH
Confidence 3456555543 347899999999 999999999999999999999999999999999988764 3444432
Q ss_pred HHHHHHHHHHHHhh
Q 031514 140 QVVKEAVLQAIKNV 153 (158)
Q Consensus 140 ~~vk~al~~ai~~~ 153 (158)
+.|+++|.+++.+.
T Consensus 875 ~~l~~~L~~~L~~~ 888 (895)
T PRK00275 875 SRLQDAICEQLDAR 888 (895)
T ss_pred HHHHHHHHHHHhcc
Confidence 45777777777543
No 18
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.60 E-value=0.0005 Score=65.52 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=57.8
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCH---HHHHHHHHHHHHh
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDA---QVVKEAVLQAIKN 152 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~vk~al~~ai~~ 152 (158)
-..|.|.|..+ ||+|.+|..+|.++||+|.+|.|+|.++.+.++|-+... ++..++. +.|+++|..++..
T Consensus 808 ~TvlEV~a~DR-pGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~-----~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 808 RSYMELIALDQ-PGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA-----DRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred eEEEEEEeCCc-hHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC-----CCCcCCHHHHHHHHHHHHHHHhh
Confidence 37899999999 999999999999999999999999999999999988664 4566663 3555666655543
No 19
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.55 E-value=0.0011 Score=63.27 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=60.3
Q ss_pred CeEEEEEec--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCH---HH
Q 031514 67 PVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDA---QV 141 (158)
Q Consensus 67 p~V~V~~~~--~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~ 141 (158)
|.|.+.... +-..|.|.+..+ ||+|.+|..+|..+|++|..|.|+|.++.++.++.+... ++...+. +.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~Dr-pGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~-----~g~~~~~~~~~~ 857 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDR-PGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE-----HDRPLSESARQA 857 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCc-CcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-----CCCcCChHHHHH
Confidence 456655543 237899999999 999999999999999999999999999999999988764 3333433 45
Q ss_pred HHHHHHHHH
Q 031514 142 VKEAVLQAI 150 (158)
Q Consensus 142 vk~al~~ai 150 (158)
|+++|..++
T Consensus 858 l~~~L~~~l 866 (869)
T PRK04374 858 LRDALCACL 866 (869)
T ss_pred HHHHHHHHh
Confidence 555555554
No 20
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.47 E-value=0.0002 Score=58.91 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=46.1
Q ss_pred chhHhHHHHHHHhhHHhhcC--CC-CCCCcccchhhHHHHHHHHHHHHHHHHHHhh
Q 031514 2 SSREQNKAALYEKLMLLRDV--TN-STSMNKTSIVVDASKYIEELKQQVETLNQEI 54 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl--~~-~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e~ 54 (158)
+.||||=+|.|+-|.+|+-- +| ....-|.-||-.||+||..||.-++++.+..
T Consensus 124 MRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 124 MRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 46888889999999999766 44 6678999999999999999999999987743
No 21
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.44 E-value=0.0028 Score=40.11 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=35.6
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
+.|.|.|+.+ ||+|.++...|.++|+++.++.+.+.++
T Consensus 1 ~~v~v~~~dr-pG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 1 YRVRVIVPDR-PGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEEETS-TTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred CEEEEEcCCC-CCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 3688999999 9999999999999999999999999876
No 22
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.42 E-value=0.0018 Score=60.96 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=64.6
Q ss_pred CeEEEEEe-cCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCHHHHHHH
Q 031514 67 PVVTVETL-EKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDAQVVKEA 145 (158)
Q Consensus 67 p~V~V~~~-~~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~a 145 (158)
|-|.+... .+.+.|.|.|+.+ ||++.+|..+|..+|++|++|++.+.||+.+.++.+... ++.....+.+++.
T Consensus 588 ~~v~~~~~~~~~~~V~V~~~Dr-pGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-----~~~~~~~~~l~~~ 661 (774)
T PRK03381 588 VHVEIAPADPHMVEVTVVAPDR-RGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-----FGSPPDAALLRQD 661 (774)
T ss_pred CEEEEeeCCCCeEEEEEEecCC-ccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-----CCCcchHHHHHHH
Confidence 44554433 3568899999999 999999999999999999999999989999998887764 2333446788888
Q ss_pred HHHHHHh
Q 031514 146 VLQAIKN 152 (158)
Q Consensus 146 l~~ai~~ 152 (158)
|.+++..
T Consensus 662 L~~~L~~ 668 (774)
T PRK03381 662 LRRALDG 668 (774)
T ss_pred HHHHHcC
Confidence 8888765
No 23
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.34 E-value=0.0031 Score=42.26 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=48.7
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHh
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKN 152 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~ 152 (158)
.+.|++.++++ ||++..+..+|.++|.++.+++.++.+| |++...+ .. + .-+.+.++.+|.+...+
T Consensus 2 ~~vItv~G~Dr-pGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v-~~-------~-~~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVGPDR-PGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLV-SI-------P-EDSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEEE---TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEE-EE-------S-HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCC-CcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEE-Ee-------C-cccHHHHHHHHHHHHHH
Confidence 47899999999 9999999999999999999999999998 5555443 22 1 11566777777665443
No 24
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.33 E-value=0.0016 Score=61.97 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=54.9
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCH---HHHHHHHHHH
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDA---QVVKEAVLQA 149 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~vk~al~~a 149 (158)
..|.|.+..+ ||+|.+|..+|.++|++|..|.|+|.++-+.++|-+... ++..++. +.|+++|..+
T Consensus 784 T~iev~a~Dr-pGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~-----~g~~l~~~~~~~l~~~L~~~ 852 (854)
T PRK01759 784 TEMELFALDR-AGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ-----QGQALDEEERKALKSRLLSN 852 (854)
T ss_pred EEEEEEeCCc-hHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC-----CCCcCChHHHHHHHHHHHHH
Confidence 7899999999 999999999999999999999999999999999988765 4556654 3444444444
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.30 E-value=0.0024 Score=60.09 Aligned_cols=75 Identities=21% Similarity=0.147 Sum_probs=58.8
Q ss_pred eEEEEEecC--eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCHHHHHHH
Q 031514 68 VVTVETLEK--GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDAQVVKEA 145 (158)
Q Consensus 68 ~V~V~~~~~--~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~a 145 (158)
.|.+....+ -..|.|.|+.+ ||+|.+|..+|..+|++|.+|.|+|.++.+++++.+... ++..++.. .+.
T Consensus 696 ~v~~~~~~~~~~t~i~V~a~Dr-pGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~-----~g~~~~~~--~~~ 767 (774)
T PRK03381 696 RVLWLDGASPDATVLEVRAADR-PGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA-----AGGPLADA--RAA 767 (774)
T ss_pred EEEEEECCCCCeEEEEEEeCCc-hhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECC-----CCCcCchH--HHH
Confidence 344444332 37899999999 999999999999999999999999999999999988765 45555543 455
Q ss_pred HHHHH
Q 031514 146 VLQAI 150 (158)
Q Consensus 146 l~~ai 150 (158)
|.++|
T Consensus 768 l~~~L 772 (774)
T PRK03381 768 VEQAV 772 (774)
T ss_pred HHHHh
Confidence 55554
No 26
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.30 E-value=0.0053 Score=39.22 Aligned_cols=47 Identities=30% Similarity=0.481 Sum_probs=40.3
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccc
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDF 126 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~ 126 (158)
.|.|.|+.+ +|++.+|+.+|.++++.+.++.+.+.++.....+.+..
T Consensus 2 ~l~i~~~d~-~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~ 48 (70)
T cd04873 2 VVEVYAPDR-PGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD 48 (70)
T ss_pred EEEEEeCCC-CCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC
Confidence 578999999 99999999999999999999999988776555555544
No 27
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.25 E-value=0.0034 Score=60.15 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=62.2
Q ss_pred CCeEEEEEec--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCC-C---H
Q 031514 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGI-D---A 139 (158)
Q Consensus 66 ~p~V~V~~~~--~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~-~---~ 139 (158)
.|.|.+.... +...|.|.|..+ ||+|.+|..+|.++|++|.+|.|+|.++....++.+... ++..+ + .
T Consensus 830 ~~~V~~~~~~s~~~t~i~I~~~Dr-pGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-----~g~~i~~~~~~ 903 (931)
T PRK05092 830 PPRVTIDNEASNRFTVIEVNGRDR-PGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL-----FGLKITNEARQ 903 (931)
T ss_pred CCEEEEeeCCCCCeEEEEEEECCc-CcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC-----CCCcCCCHHHH
Confidence 3456665543 347899999999 999999999999999999999999999999998887654 33333 2 2
Q ss_pred HHHHHHHHHHHH
Q 031514 140 QVVKEAVLQAIK 151 (158)
Q Consensus 140 ~~vk~al~~ai~ 151 (158)
+.|+++|.+++.
T Consensus 904 ~~l~~~L~~~L~ 915 (931)
T PRK05092 904 AAIRRALLAALA 915 (931)
T ss_pred HHHHHHHHHHhc
Confidence 457777777664
No 28
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.21 E-value=0.0034 Score=59.75 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=62.2
Q ss_pred CCeEEEEEec--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee-eCCeEEEEEeccccccccCCCCCCCHH--
Q 031514 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDRFQLEAVGGDFLQHIEGHADGIDAQ-- 140 (158)
Q Consensus 66 ~p~V~V~~~~--~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~-~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 140 (158)
.|.|.+.... +...|.|.|+.+ ||+|.+|..+|..+||+|++|.|.+ .+|..++++.+... ++..++.+
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~Dr-pGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-----~g~~~~~~~~ 737 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQ-ANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-----NGKLLEFDRR 737 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCC-ccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-----CCCCCCHHHH
Confidence 4456654432 457899999999 9999999999999999999999987 78999999988765 34445443
Q ss_pred -HHHHHHHHHHH
Q 031514 141 -VVKEAVLQAIK 151 (158)
Q Consensus 141 -~vk~al~~ai~ 151 (158)
.|+++|.+++.
T Consensus 738 ~~l~~~L~~aL~ 749 (854)
T PRK01759 738 RQLEQALTKALN 749 (854)
T ss_pred HHHHHHHHHHHc
Confidence 46666666664
No 29
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.14 E-value=0.0067 Score=57.94 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=63.1
Q ss_pred CCeEEEEEec--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee-CCeEEEEEeccccccccCCCCCCCH---
Q 031514 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS-DRFQLEAVGGDFLQHIEGHADGIDA--- 139 (158)
Q Consensus 66 ~p~V~V~~~~--~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~-~~~~l~~~~~~~~~~~~~~~~~~~~--- 139 (158)
.|-|.+.... +...|.|.|+.+ ||+|..|..+|..+||+|.+|.|.+. +|..++++.+... ++..++.
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~Dr-pGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-----~g~~~~~~~~ 761 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDR-PYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-----DGSPLSQDRH 761 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCC-cCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-----CCCCCCHHHH
Confidence 4556655543 458899999999 99999999999999999999998876 5699999988765 3444444
Q ss_pred HHHHHHHHHHHHh
Q 031514 140 QVVKEAVLQAIKN 152 (158)
Q Consensus 140 ~~vk~al~~ai~~ 152 (158)
+.|+++|.+++..
T Consensus 762 ~~I~~~L~~aL~~ 774 (884)
T PRK05007 762 QVIRKALEQALTQ 774 (884)
T ss_pred HHHHHHHHHHHcC
Confidence 3477888877754
No 30
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.12 E-value=0.004 Score=59.06 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=62.3
Q ss_pred CCeEEEEEe--cCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEe-eeCCeEEEEEeccccccccCCCCCCCH---
Q 031514 66 LPVVTVETL--EKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS-CSDRFQLEAVGGDFLQHIEGHADGIDA--- 139 (158)
Q Consensus 66 ~p~V~V~~~--~~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs-~~~~~~l~~~~~~~~~~~~~~~~~~~~--- 139 (158)
.|-|.+... ++...|.|.++.+ ||+|.+|..+|..+||+|.+|.|. +.+|..++++.+... ++...+.
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~~Dr-pgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-----~g~~~~~~~~ 728 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYAPDQ-PGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-----FGSPPAAERV 728 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEeCCC-CcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-----CCCCCCcHHH
Confidence 344554332 2457899999999 999999999999999999999999 668899999988765 3444433
Q ss_pred -HHHHHHHHHHHHh
Q 031514 140 -QVVKEAVLQAIKN 152 (158)
Q Consensus 140 -~~vk~al~~ai~~ 152 (158)
+.|+++|.+++..
T Consensus 729 ~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 729 FQELLQGLVDVLAG 742 (850)
T ss_pred HHHHHHHHHHHHcC
Confidence 3477777777754
No 31
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.04 E-value=0.00038 Score=58.66 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=41.6
Q ss_pred hhHhHHHHHHHhhHHhhcCCC---CCCCcccchhhHHHHHHHHHHHHHHHH
Q 031514 3 SREQNKAALYEKLMLLRDVTN---STSMNKTSIVVDASKYIEELKQQVETL 50 (158)
Q Consensus 3 sER~RR~kln~~~~~LRsl~~---~~K~DKaSIl~dAI~YIk~Lq~~v~~L 50 (158)
.||+|=.-||.-|..||+|.| ..|..||+||.-+.+||.+|+.+--+|
T Consensus 67 NERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 67 NERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred hHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 478888999999999999944 789999999999999999998765544
No 32
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.01 E-value=0.0073 Score=57.52 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=49.5
Q ss_pred eEEEEEec--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccc
Q 031514 68 VVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDF 126 (158)
Q Consensus 68 ~V~V~~~~--~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~ 126 (158)
.|.+.... +-..|.|.|+.+ ||+|.+|..+|..+|++|.+|.|+|.+|.+++++.+..
T Consensus 775 ~V~~~~~~~~~~T~i~V~a~Dr-pGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~ 834 (856)
T PRK03059 775 RVDLRPDERGQYYILSVSANDR-PGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG 834 (856)
T ss_pred eEEEEEcCCCCEEEEEEEeCCc-chHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC
Confidence 35444432 347899999999 99999999999999999999999999999999998843
No 33
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.99 E-value=0.0067 Score=57.77 Aligned_cols=79 Identities=20% Similarity=0.374 Sum_probs=59.5
Q ss_pred CCeEEEEEec--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEe-eeCCeEEEEEeccccccccCCCCCCC----
Q 031514 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS-CSDRFQLEAVGGDFLQHIEGHADGID---- 138 (158)
Q Consensus 66 ~p~V~V~~~~--~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs-~~~~~~l~~~~~~~~~~~~~~~~~~~---- 138 (158)
.|-|-+.... +...|.|.|+.+ ||+|++|..+|..+||+|++|.|. +.+|+.++++.+... ++. ..
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~d~-~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-----~~~-~~~~~~ 737 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTPDQ-PDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-----EED-VHYRDI 737 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEecCC-CcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-----CCC-CChHHH
Confidence 3445454432 458899999999 999999999999999999999995 568999999998765 222 32
Q ss_pred HHHHHHHHHHHHH
Q 031514 139 AQVVKEAVLQAIK 151 (158)
Q Consensus 139 ~~~vk~al~~ai~ 151 (158)
.+.|++.|.+++.
T Consensus 738 ~~~i~~~l~~~l~ 750 (856)
T PRK03059 738 INLVEHELAERLA 750 (856)
T ss_pred HHHHHHHHHHHHc
Confidence 3446666666654
No 34
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.93 E-value=0.014 Score=39.27 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=50.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHh
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKN 152 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~ 152 (158)
+.|++.|+.+ ||+...|-..|.++|..+..++....+| |.+..... .. ..+...+++.+.....+
T Consensus 2 ~iltv~g~Dr-~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~-~~--------~~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDR-PGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE-GS--------WDAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCC-ChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE-ec--------cccHHHHHHHHHHHHHH
Confidence 5789999999 9999999999999999999999999887 55544332 21 24677788777764433
No 35
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=96.87 E-value=0.0015 Score=53.33 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=40.4
Q ss_pred hhHhHHHHHHHhhHHhhcCCC--C--CCCcccchhhHHHHHHHHHHHHHHHHHH
Q 031514 3 SREQNKAALYEKLMLLRDVTN--S--TSMNKTSIVVDASKYIEELKQQVETLNQ 52 (158)
Q Consensus 3 sER~RR~kln~~~~~LRsl~~--~--~K~DKaSIl~dAI~YIk~Lq~~v~~Le~ 52 (158)
-||+||..|.+.|..|+.++| . +.-+.++||.-|..||+.|+.+......
T Consensus 66 LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~ 119 (232)
T KOG2483|consen 66 LEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ 119 (232)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence 389999999999999999955 2 2223689999999999999887665543
No 36
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.86 E-value=0.0093 Score=57.10 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=56.0
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEe-eeCCeEEEEEeccccccccCCCCC-CC----HHHHHHHHHHH
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS-CSDRFQLEAVGGDFLQHIEGHADG-ID----AQVVKEAVLQA 149 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs-~~~~~~l~~~~~~~~~~~~~~~~~-~~----~~~vk~al~~a 149 (158)
+...|.|.|+.+ ||+|++|..+|..+||+|.+|+|. +.+|+.++++.+... ++.. .+ .+.|.++|.++
T Consensus 703 ~~t~V~V~~~Dr-pgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-----~g~~~~~~~~r~~~i~~~L~~~ 776 (895)
T PRK00275 703 GGTQIFIYAPDQ-HDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-----DGEPIGDNPARIEQIREGLTEA 776 (895)
T ss_pred CeEEEEEEeCCC-CcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-----CCCCccchHHHHHHHHHHHHHH
Confidence 457899999999 999999999999999999999985 457899999988765 2333 22 24477777777
Q ss_pred HH
Q 031514 150 IK 151 (158)
Q Consensus 150 i~ 151 (158)
+.
T Consensus 777 L~ 778 (895)
T PRK00275 777 LR 778 (895)
T ss_pred Hc
Confidence 64
No 37
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0058 Score=57.59 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=63.5
Q ss_pred CCeEEEEEec--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCHHHHH
Q 031514 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDAQVVK 143 (158)
Q Consensus 66 ~p~V~V~~~~--~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vk 143 (158)
.|.|++.... +...+++.+..+ ||+|..+-.+|.+++|++.+|.|+|+|.-..+++++... .+..+ ..+++
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDR-pGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~-----~~~~l-~~~~~ 850 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDR-PGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA-----DGQAL-NAELR 850 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCc-ccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecc-----ccccC-CHHHH
Confidence 4567766654 347899999999 999999999999999999999999999988888887765 45555 45567
Q ss_pred HHHHHHHH
Q 031514 144 EAVLQAIK 151 (158)
Q Consensus 144 ~al~~ai~ 151 (158)
+.+.+.+-
T Consensus 851 q~l~~~ll 858 (867)
T COG2844 851 QSLLQRLL 858 (867)
T ss_pred HHHHHHHH
Confidence 77666654
No 38
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.81 E-value=0.011 Score=56.02 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=56.0
Q ss_pred eEEEEEecC--eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCH---HHH
Q 031514 68 VVTVETLEK--GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDA---QVV 142 (158)
Q Consensus 68 ~V~V~~~~~--~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~v 142 (158)
.|.+.-..+ -..|.|.|..+ ||+|.+|..+|..+|++|.++.++|.++-...++.+... .+..++. +.|
T Consensus 768 ~V~~d~~~s~~~t~~~v~~~Dr-pGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~-----~g~~~~~~~~~~l 841 (850)
T TIGR01693 768 RVTILNTASRKATIMEVRALDR-PGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL-----FGLKLTDEEEQRL 841 (850)
T ss_pred eEEEccCCCCCeEEEEEEECCc-cHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECC-----CCCCCCHHHHHHH
Confidence 455444332 37899999999 999999999999999999999999998877777766543 3444443 444
Q ss_pred HHHHHHH
Q 031514 143 KEAVLQA 149 (158)
Q Consensus 143 k~al~~a 149 (158)
+++|..+
T Consensus 842 ~~~L~~~ 848 (850)
T TIGR01693 842 LEVLAAS 848 (850)
T ss_pred HHHHHHH
Confidence 4444444
No 39
>PRK00194 hypothetical protein; Validated
Probab=96.72 E-value=0.011 Score=40.52 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=49.4
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHH
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQA 149 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~a 149 (158)
.+.|.+.|+.+ ||++..+...|-++|+++.+.+..+.++ |.+.+.+ ..+ ....+...+++.|...
T Consensus 3 ~~~ltv~g~Dr-pGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v-~~~------~~~~~~~~l~~~l~~l 68 (90)
T PRK00194 3 KAIITVIGKDK-VGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLV-DIS------ESKKDFAELKEELEEL 68 (90)
T ss_pred eEEEEEEcCCC-CCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEE-Eec------CCCCCHHHHHHHHHHH
Confidence 47899999999 9999999999999999999999888776 4444332 222 2245677787777664
No 40
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.67 E-value=0.017 Score=55.53 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=60.1
Q ss_pred CeEEEEEec--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee-eCCeEEEEEeccccccccCCCCCC----CH
Q 031514 67 PVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDRFQLEAVGGDFLQHIEGHADGI----DA 139 (158)
Q Consensus 67 p~V~V~~~~--~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~-~~~~~l~~~~~~~~~~~~~~~~~~----~~ 139 (158)
|-|.+.... +...|.|.|+.+ +|+|.+|..+|..+|++|.+|.+.+ .||+++.++.+... ++... ..
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr-~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-----~g~~~~~~~~~ 793 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADH-PGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-----FGRDEDEPRRL 793 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCC-CcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-----CCCCCCCHHHH
Confidence 345555543 468999999999 9999999999999999999999988 57899998877553 22222 24
Q ss_pred HHHHHHHHHHHH
Q 031514 140 QVVKEAVLQAIK 151 (158)
Q Consensus 140 ~~vk~al~~ai~ 151 (158)
+.|.++|.+++.
T Consensus 794 ~~l~~~L~~~l~ 805 (931)
T PRK05092 794 ARLAKAIEDALS 805 (931)
T ss_pred HHHHHHHHHHHc
Confidence 556777777663
No 41
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.62 E-value=0.045 Score=36.31 Aligned_cols=64 Identities=14% Similarity=0.262 Sum_probs=50.0
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC------C-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHh
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD------R-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKN 152 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~------~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~ 152 (158)
|+|.|+.+ ||++.+|-+.|.++|+++.+.+..+.+ + |.+...+. . +...+...++..|...-.+
T Consensus 2 l~v~g~D~-~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~-~-------p~~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGNDR-PGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLA-L-------PAGTDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCCC-CCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEe-c-------CCCCCHHHHHHHHHHHHHH
Confidence 68999999 999999999999999999999998876 3 55544332 2 2346788888888775544
No 42
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.51 E-value=0.017 Score=55.15 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=56.5
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee-eCCeEEEEEeccccccccCCCC-CCCHHHHHHHHHHHHHh
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDRFQLEAVGGDFLQHIEGHAD-GIDAQVVKEAVLQAIKN 152 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~-~~~~~l~~~~~~~~~~~~~~~~-~~~~~~vk~al~~ai~~ 152 (158)
+...|.|.|+.+ ||+|++|..+|..+|++|++|.|.+ .+|+.++++.+..+ ++. .-....|.+.|.+++..
T Consensus 689 ~~~~v~v~~~d~-~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-----~~~~~~~~~~i~~~l~~~l~~ 761 (869)
T PRK04374 689 DALEVFVYSPDR-DGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-----DTYADGDPQRLAAALRQVLAG 761 (869)
T ss_pred CeEEEEEEeCCC-ccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-----CCCChHHHHHHHHHHHHHHcC
Confidence 558899999999 9999999999999999999999998 58899999988765 222 12244466666666643
No 43
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.47 E-value=0.039 Score=36.59 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=50.5
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
|+|.++++ ||++..+..+|-++|+++.+.+.++.++ |++...+ .. +...+...++.+|.....
T Consensus 2 vtv~G~Dr-pGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v-~~-------p~~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTGPDR-PGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILV-QI-------PDSADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEcCCC-CCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEE-Ec-------CCCCCHHHHHHHHHHHHH
Confidence 78999999 9999999999999999999998888877 6666544 22 233678888888876543
No 44
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.46 E-value=0.024 Score=38.74 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=52.1
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHh
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKN 152 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~ 152 (158)
+.|++.|+.+ ||++..|...|-.+|+++.+.+..+.++ |.+.+.+. .+ +...+...++..|...-.+
T Consensus 2 ~vl~i~g~D~-pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~-~~------~~~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDR-VGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVD-IS------ESNLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCC-CCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEE-eC------CCCCCHHHHHHHHHHHHHH
Confidence 5789999999 9999999999999999999999888766 55554432 21 2246788888887765544
No 45
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.43 E-value=0.063 Score=35.31 Aligned_cols=64 Identities=8% Similarity=0.129 Sum_probs=47.8
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC--C-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--R-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~--~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
|+|.|+.+ ||++.+|...|-++|+.+.+.+..+.. + |.+.+.+. .+ ....+..+++.+|...-.
T Consensus 2 i~v~g~D~-~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~-~~------~~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 2 LTLSCPDR-PGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFE-LE------GFDLSREALEAAFAPVAA 68 (74)
T ss_pred EEEEcCCC-CCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEE-eC------CCCCCHHHHHHHHHHHHH
Confidence 78999999 999999999999999999999888632 2 55544332 21 123678888888776443
No 46
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.17 E-value=0.11 Score=34.50 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=33.3
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee--CCe
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DRF 117 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~--~~~ 117 (158)
+.|+|.+..+ +|+|.+|..++.+.+..+.++++... +++
T Consensus 7 ~~l~i~~~dr-~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~ 47 (80)
T PF13291_consen 7 VRLRIEAEDR-PGLLADITSVISENGVNIRSINARTNKDDGT 47 (80)
T ss_dssp EEEEEEEE---TTHHHHHHHHHHCSSSEEEEEEEEE--ETTE
T ss_pred EEEEEEEEcC-CCHHHHHHHHHHHCCCCeEEEEeEEeccCCE
Confidence 6789999999 99999999999999999999999995 553
No 47
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.13 E-value=0.0056 Score=49.48 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=44.0
Q ss_pred hhHhHHHHHHHhhHHhhcC-CC----CCCCcccchhhHHHHHHHHHHHHHHHHHHhh
Q 031514 3 SREQNKAALYEKLMLLRDV-TN----STSMNKTSIVVDASKYIEELKQQVETLNQEI 54 (158)
Q Consensus 3 sER~RR~kln~~~~~LRsl-~~----~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e~ 54 (158)
.||+|=+-+|..|..||.+ |+ .+|.-|..+|.-||.||+.|+.-+..-+...
T Consensus 116 RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 116 RERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 4788889999999999999 52 5678999999999999999998877666443
No 48
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.072 Score=50.51 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=58.7
Q ss_pred EEEEecCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee-CCeEEEEEeccccccccCCCCCCCHHHHHHHHHH
Q 031514 70 TVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS-DRFQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQ 148 (158)
Q Consensus 70 ~V~~~~~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ 148 (158)
.++...++..|.|.|+.+ |++++.+..++...|++|+.|++-+. ||+.++++.+.+. ++..+. ++...++.+
T Consensus 677 ~~r~~~~~teV~V~a~d~-p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-----~g~~~~-~dr~~~~~~ 749 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDR-PRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-----DGFPVE-EDRRAALRG 749 (867)
T ss_pred eecccCCceEEEEEcCCC-ccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-----CCCccc-hhHHHHHHH
Confidence 444456789999999999 99999999999999999999999774 8899999988876 455555 444444444
Q ss_pred HH
Q 031514 149 AI 150 (158)
Q Consensus 149 ai 150 (158)
.+
T Consensus 750 ~l 751 (867)
T COG2844 750 EL 751 (867)
T ss_pred HH
Confidence 33
No 49
>PLN03217 transcription factor ATBS1; Provisional
Probab=95.67 E-value=0.019 Score=40.06 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=40.0
Q ss_pred HHHHHhhHHhhcCCC-C---CCCcccc---hhhHHHHHHHHHHHHHHHHHHhhccC
Q 031514 9 AALYEKLMLLRDVTN-S---TSMNKTS---IVVDASKYIEELKQQVETLNQEIGTS 57 (158)
Q Consensus 9 ~kln~~~~~LRsl~~-~---~K~DKaS---Il~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (158)
+.||+....|+.|.| + ...+|+| +|.++-.||+.|.++|.+|...+..+
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999954 2 3346655 69999999999999999999876543
No 50
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.47 E-value=0.11 Score=32.76 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=30.3
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
+.|.++.+ ||.|.+|+..|.+.|+++.+.+....
T Consensus 1 ~~v~~~d~-~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDR-PGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCC-CChHHHHHHHHHHcCCCEEEEEEEec
Confidence 46788999 99999999999999999998887664
No 51
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.39 E-value=0.16 Score=32.91 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=32.4
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
|+|.++.+ ||+|.+|+.+|.+.|.++.+.+....+
T Consensus 2 l~v~~~d~-~g~L~~i~~~i~~~~~nI~~v~~~~~~ 36 (74)
T cd04887 2 LRLELPNR-PGMLGRVTTAIGEAGGDIGAIDLVEQG 36 (74)
T ss_pred EEEEeCCC-CchHHHHHHHHHHcCCcEEEEEEEEec
Confidence 78999999 999999999999999999999988764
No 52
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.92 E-value=0.33 Score=30.98 Aligned_cols=36 Identities=8% Similarity=0.309 Sum_probs=32.9
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
++|+|.+..+ +|++.+++..|.+.+..+.+.+..+.
T Consensus 1 ~yl~i~~~d~-~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 1 YYLRLTVKDK-PGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred CEEEEEeCCC-CcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 4789999999 99999999999999999999987665
No 53
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.81 E-value=0.22 Score=41.92 Aligned_cols=69 Identities=10% Similarity=0.182 Sum_probs=52.5
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEe---eeCCeEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHh
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS---CSDRFQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKN 152 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~ 152 (158)
.+.|+|.|+++ +|+...|-..|-++|+++++++-. ..+.|.+.+..... ....++..+++++|...-..
T Consensus 9 ~~iitv~G~Dr-~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~------~~~~~~~~~l~~~l~~l~~~ 80 (289)
T PRK13010 9 SYVLTLACPSA-PGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ------SAEAASVDTFRQEFQPVAEK 80 (289)
T ss_pred CEEEEEECCCC-CCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC------CCCCCCHHHHHHHHHHHHHH
Confidence 47899999999 999999999999999999999984 23345555433322 13367888999988876554
No 54
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.81 E-value=0.19 Score=33.23 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=47.4
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEE-eccccccccCCCCCCCHHHHHHHHHHH
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAV-GGDFLQHIEGHADGIDAQVVKEAVLQA 149 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~vk~al~~a 149 (158)
.|+|.||.+ .|+=.++...+-++||.+....+++.+..-..++ ++..+ ..-.+.=+-+|+-|.++
T Consensus 2 vitvnCPDk-tGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~-----~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDK-TGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRP-----PSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCc-cCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCC-----CCCcccHHHHHHHHHhc
Confidence 589999999 9999999999999999999999999887222222 22222 23345666677666543
No 55
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.60 E-value=0.37 Score=40.33 Aligned_cols=68 Identities=9% Similarity=0.146 Sum_probs=53.0
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee--eCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHh
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC--SDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKN 152 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~--~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~ 152 (158)
.+.|++.|+++ ||++..|-.+|-++|+++.+.+.++ .+| |.+...+.- ++...+...++++|...-..
T Consensus 6 ~~vitv~G~Dr-pGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-------~~~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK06027 6 RYVLTLSCPDR-PGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-------DGLIFNLETLRADFAALAEE 76 (286)
T ss_pred eEEEEEECCCC-CcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-------CCCCCCHHHHHHHHHHHHHH
Confidence 47899999999 9999999999999999999999998 766 666555422 12345578888887765443
No 56
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.50 E-value=0.26 Score=29.77 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=31.5
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
|++.|+.+ +|.+..++..|.+.++++.+..+...+
T Consensus 1 l~v~~~~~-~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDR-PGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEecc-CcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 46889999 999999999999999999999887765
No 57
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.32 E-value=0.29 Score=31.68 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=31.6
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
.+.|.++.+ ||++.+|+..|.+.+.++...+.+..
T Consensus 2 ~l~i~~~d~-~g~l~~I~~~la~~~inI~~i~~~~~ 36 (76)
T cd04888 2 TLSLLLEHR-PGVLSKVLNTIAQVRGNVLTINQNIP 36 (76)
T ss_pred EEEEEecCC-CchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 578999999 99999999999999999999887553
No 58
>PRK04435 hypothetical protein; Provisional
Probab=93.94 E-value=0.43 Score=36.11 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=37.1
Q ss_pred EecCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee-eCC
Q 031514 73 TLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDR 116 (158)
Q Consensus 73 ~~~~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~-~~~ 116 (158)
..|..+.|.+.++.+ ||+|.+|++.|.+.|.+|.+.+.+. .+|
T Consensus 65 ~~~r~vtL~i~l~Dr-~GlLs~Il~~IA~~~aNIltI~q~i~~~g 108 (147)
T PRK04435 65 VKGKIITLSLLLEDR-SGTLSKVLNVIAEAGGNILTINQSIPLQG 108 (147)
T ss_pred CCCcEEEEEEEEecC-CCHHHHHHHHHHHcCCCeEEEEEEcCCCC
Confidence 345679999999999 9999999999999999999988654 355
No 59
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.91 E-value=0.6 Score=29.82 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=31.7
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
+.+++.++.+ ||.|.+++..|.++|+++.+......
T Consensus 2 ~~~~v~~~d~-~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDE-PGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCC-CCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 3578899999 99999999999999999998876664
No 60
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.90 E-value=0.67 Score=29.67 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.1
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
..+.+..+.+ ||.|.+++..|.+.|+.+.+......
T Consensus 2 ~~~~v~~~d~-pG~l~~i~~~l~~~~inI~~i~~~~~ 37 (72)
T cd04883 2 SQIEVRVPDR-PGQLADIAAIFKDRGVNIVSVLVYPS 37 (72)
T ss_pred cEEEEEECCC-CCHHHHHHHHHHHcCCCEEEEEEecc
Confidence 4678889999 99999999999999999998865443
No 61
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.70 E-value=0.35 Score=31.78 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=33.7
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCe
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRF 117 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~ 117 (158)
.|+|.|..+ +|++.+|+.++.+.+..+.+.++.+. ++
T Consensus 2 ~l~I~~~dr-~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDR-LGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEcc-chHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 588999999 99999999999999999999998775 54
No 62
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=93.65 E-value=0.85 Score=38.25 Aligned_cols=66 Identities=11% Similarity=0.196 Sum_probs=51.9
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC--C-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--R-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~--~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
.+.|+|.|+++ ||++..|-..|-++|+++.+.+..+.. + |.+.+.+. . +...+...++++|...-.
T Consensus 7 ~~vitv~G~Dr-pGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~-~-------p~~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 7 TFVLTLSCPSA-AGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFH-S-------EEGLDEDALRAGFAPIAA 75 (286)
T ss_pred eEEEEEEeCCC-CCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEe-c-------CCCCCHHHHHHHHHHHHH
Confidence 47899999999 999999999999999999999987432 2 77655442 2 235678889988877544
No 63
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.62 E-value=0.43 Score=31.27 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=31.1
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
+.+..+.+ ||.|.++++.|..+|+.+.+....+..+
T Consensus 2 l~~~l~d~-pG~L~~vL~~f~~~~vni~~I~Srp~~~ 37 (75)
T cd04880 2 LVFSLKNK-PGALAKALKVFAERGINLTKIESRPSRK 37 (75)
T ss_pred EEEEeCCc-CCHHHHHHHHHHHCCCCEEEEEeeecCC
Confidence 34556788 9999999999999999999999888754
No 64
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.54 E-value=0.22 Score=28.45 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=31.3
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
|.+.|+.. +|.+.+++..|...++.+........+
T Consensus 1 i~i~~~~~-~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDR-PGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCC-CchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999 999999999999999999999887654
No 65
>PRK08577 hypothetical protein; Provisional
Probab=93.50 E-value=0.93 Score=33.52 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=38.9
Q ss_pred eEEEEEec----CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 68 VVTVETLE----KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 68 ~V~V~~~~----~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
++-+.... +.+.|+|.+..+ +|+|.+|+..|.++++++.+.+..+..
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr-~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDR-PGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCC-CCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 45555542 258899999999 999999999999999999998877753
No 66
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=93.32 E-value=0.51 Score=29.04 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=35.5
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC-CeEEEEEecc
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD-RFQLEAVGGD 125 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~-~~~l~~~~~~ 125 (158)
|.+..+.+ ||.|.+++..|.+.|+++.+..+...+ +..+-.+..+
T Consensus 1 ~~v~~~d~-~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENK-PGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCC-CChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 45788999 999999999999999999999887765 4444444433
No 67
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.26 E-value=1 Score=28.23 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=32.3
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
.+++.++.+ +|.|.+++..|.+.++.+.+.+..+.+
T Consensus 2 ~l~i~~~d~-~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDK-PGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCC-CChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 478899999 999999999999999999998887753
No 68
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=93.22 E-value=0.87 Score=38.12 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=50.1
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC--C-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHH
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--R-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAI 150 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~--~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai 150 (158)
.|++.|+++ +|+...|-..|-++|.++++++-...+ | |.+...+. .. +...+.+++++++..++
T Consensus 2 ~itv~g~D~-~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~-~~------~~~~~~~~l~~~l~~~~ 68 (280)
T TIGR00655 2 ILLVSCPDQ-KGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQ-LE------GFRLEESSLLAAFKSAL 68 (280)
T ss_pred EEEEECCCC-CChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEE-eC------CCCCCHHHHHHHHHHHH
Confidence 579999999 999999999999999999999988753 4 66654332 21 23478889999888733
No 69
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=92.87 E-value=1.6 Score=28.89 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=31.3
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
.+.+..+.+ +|.|.++++.|.++|+.+.+..+.+..
T Consensus 3 sl~~~~~d~-~G~L~~il~~f~~~~ini~~i~s~p~~ 38 (80)
T cd04905 3 SIVFTLPNK-PGALYDVLGVFAERGINLTKIESRPSK 38 (80)
T ss_pred EEEEEECCC-CCHHHHHHHHHHHCCcCEEEEEEEEcC
Confidence 456667788 999999999999999999999887764
No 70
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=92.54 E-value=0.4 Score=33.74 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=53.8
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHh
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKN 152 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~ 152 (158)
+.|+|.-..+ +|+...|-.+|-++|+++++.+=+-.+| |++-..+--. ....+...++..|.....+
T Consensus 4 avITV~GkDr-~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~-------~~~~d~~~lr~~l~~~~~~ 71 (90)
T COG3830 4 AVITVIGKDR-VGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS-------KEVVDFAALRDELAAEGKK 71 (90)
T ss_pred EEEEEEcCCC-CchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC-------hHhccHHHHHHHHHHHHHh
Confidence 6789999999 9999999999999999999998888887 7877766321 3467777777777665543
No 71
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=92.31 E-value=0.051 Score=51.97 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=45.7
Q ss_pred hHhHHHHHHHhhHHhhcCCC--CCCCcccchhhHHHHHHHHHHHHHHHHHHhhc
Q 031514 4 REQNKAALYEKLMLLRDVTN--STSMNKTSIVVDASKYIEELKQQVETLNQEIG 55 (158)
Q Consensus 4 ER~RR~kln~~~~~LRsl~~--~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~ 55 (158)
|+|=|--||+++..||.++| ..|+.|.+++.-||+||++|+..-..+..+.+
T Consensus 284 EKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~ 337 (953)
T KOG2588|consen 284 EKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENA 337 (953)
T ss_pred HHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhh
Confidence 78889999999999999954 67999999999999999999988777766543
No 72
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.98 E-value=1.6 Score=27.14 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=30.4
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~ 113 (158)
+.+.++.+ +|.+.+|+..|.++++++.+.....
T Consensus 2 l~i~~~d~-~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDK-PGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCC-CChHHHHHHHHHHcCcCeeeeEEEe
Confidence 67889999 9999999999999999999988776
No 73
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=91.89 E-value=0.11 Score=47.39 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=33.0
Q ss_pred HhHHHHHHHhhHHhhcC-C-C---CCCCcccchhhHHHHHHH
Q 031514 5 EQNKAALYEKLMLLRDV-T-N---STSMNKTSIVVDASKYIE 41 (158)
Q Consensus 5 R~RR~kln~~~~~LRsl-~-~---~~K~DKaSIl~dAI~YIk 41 (158)
.|-|+|||.-|..|-|| | | ++|.||.|||.=++.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 35689999999999999 5 4 899999999999999975
No 74
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=91.87 E-value=0.091 Score=48.91 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=34.2
Q ss_pred hHhHHHHHHHhhHHhhcC-C-C---CCCCcccchhhHHHHHHH
Q 031514 4 REQNKAALYEKLMLLRDV-T-N---STSMNKTSIVVDASKYIE 41 (158)
Q Consensus 4 ER~RR~kln~~~~~LRsl-~-~---~~K~DKaSIl~dAI~YIk 41 (158)
-|-||.|-|+-|+.|.-+ | | ++..|||||+-=||.|++
T Consensus 54 ARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 54 ARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 478999999999999998 4 4 678999999999999986
No 75
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=91.85 E-value=0.72 Score=29.51 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=32.8
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
.|.|..+.+ ||.|.++++.|.+.|+++.+..+.+.++
T Consensus 3 ri~v~v~d~-pG~La~v~~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 3 QLSVFLENK-PGRLAAVTEILSEAGINIRALSIADTSE 39 (66)
T ss_pred EEEEEEcCC-CChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 477889999 9999999999999999999998766655
No 76
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.36 E-value=1.2 Score=27.63 Aligned_cols=42 Identities=10% Similarity=0.198 Sum_probs=34.9
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC--CeEEEEE
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--RFQLEAV 122 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~--~~~l~~~ 122 (158)
+.|.++.+ +|.+.+|+..|.+.++.+.+..+...+ +.....+
T Consensus 2 l~v~~~d~-~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04879 2 LLIVHKDV-PGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVL 45 (71)
T ss_pred EEEEecCC-CCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEE
Confidence 57889999 999999999999999999999987754 5544433
No 77
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=91.34 E-value=0.16 Score=44.95 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=35.2
Q ss_pred hhHhHHHHHHHhhHHhhcC-C-C---CCCCcccchhhHHHHHHHH
Q 031514 3 SREQNKAALYEKLMLLRDV-T-N---STSMNKTSIVVDASKYIEE 42 (158)
Q Consensus 3 sER~RR~kln~~~~~LRsl-~-~---~~K~DKaSIl~dAI~YIk~ 42 (158)
+-|+||++-|--|+.|-.+ | + .+..||+||+.=|-.|||-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 3589999999999999999 4 3 5679999999999999984
No 78
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.28 E-value=1.8 Score=26.80 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=30.0
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
+.|.-+.+ ||.|.+++..|.+.|+.+.+...+...
T Consensus 2 i~v~~~d~-pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 2 LAVEVPDK-PGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEEEeCCC-CcHHHHHHHHHHHCCCChhheEEEccC
Confidence 56778899 999999999999999999887765543
No 79
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=91.20 E-value=2.1 Score=26.52 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=31.7
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
.+.+.++.+ +|.|.+|+..|.+.++.+.+.+..+.
T Consensus 2 ~l~i~~~d~-~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04878 2 TLSVLVENE-PGVLNRISGLFARRGFNIESLTVGPT 36 (72)
T ss_pred EEEEEEcCC-CcHHHHHHHHHHhCCCCEEEEEeeec
Confidence 477889999 99999999999999999999988765
No 80
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=90.62 E-value=0.97 Score=35.78 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=49.9
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHH
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQA 149 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~a 149 (158)
..+.|++.++.| ||++..|-.+|-++|..+..++.+..+| |++...+ .. ...+...++.+|...
T Consensus 7 ~~lviTviG~Dr-pGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv-s~--------~~~~~~~le~~L~~l 71 (190)
T PRK11589 7 HYLVITALGADR-PGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL-SG--------SWNAITLIESTLPLK 71 (190)
T ss_pred cEEEEEEEcCCC-ChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE-eC--------ChhHHHHHHHHHHhh
Confidence 457899999999 9999999999999999999999999988 6666555 21 122556666665443
No 81
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=90.49 E-value=1.2 Score=29.38 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=31.5
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
+-++.+.+ ||.|.++|..|...|+.+.+..+.+..+
T Consensus 3 l~f~l~~~-pG~L~~vL~~f~~~~iNlt~IeSRP~~~ 38 (74)
T cd04904 3 LIFSLKEE-VGALARALKLFEEFGVNLTHIESRPSRR 38 (74)
T ss_pred EEEEeCCC-CcHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence 44556788 9999999999999999999999999764
No 82
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=90.46 E-value=1.8 Score=40.74 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=56.2
Q ss_pred cCeEEEEEEe-ccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHhh
Q 031514 75 EKGFLINVYL-EKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKNV 153 (158)
Q Consensus 75 ~~~~~I~i~c-~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~~ 153 (158)
.++..++|.. +.+ +|++.++...|--.++.|.+|++.+ +|..+..+.+.-. .+...++..+.|++..++..-
T Consensus 544 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~ 616 (693)
T PRK00227 544 EEDGFFTVIWHGDY-PRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRAN-----GPQDFDPQEFLQAYKSGVYSE 616 (693)
T ss_pred ccCCeEEEEecCCc-ccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecC-----CCCCCChHHHHHHHHHhhcCC
Confidence 4445566655 999 9999999999999999999999999 6644444444333 578899999999999887543
No 83
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.00 E-value=2.3 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=30.0
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
+++.-+.+ ||.|.++++.|.+.|..+.+......
T Consensus 2 l~v~~~d~-pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDK-PGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCC-CccHHHHHHHHHHCCCeEEEEEeccc
Confidence 56777899 99999999999999999999876665
No 84
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=89.01 E-value=5.4 Score=27.01 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=33.4
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
..+.+.-..+ ||.|.+++..++.-|+.+.+.++...+
T Consensus 4 ~~lsi~v~n~-pGVL~Ri~~lf~rRGfnI~sl~v~~t~ 40 (76)
T PRK11152 4 HQLTIKARFR-PEVLERVLRVVRHRGFQVCSMNMTQNT 40 (76)
T ss_pred EEEEEEEECC-ccHHHHHHHHHhcCCeeeeeEEeeecC
Confidence 4578888999 999999999999999999999999953
No 85
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=88.69 E-value=3.6 Score=27.90 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=33.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
..|.+..+.+ ||.|.+|...|..-|+.+.+.+++..+
T Consensus 3 ~tisi~v~n~-pGVL~Ri~~lf~rRgfNI~Sl~vg~te 39 (76)
T PRK06737 3 HTFSLVIHND-PSVLLRISGIFARRGYYISSLNLNERD 39 (76)
T ss_pred EEEEEEEecC-CCHHHHHHHHHhccCcceEEEEecccC
Confidence 4678889999 999999999999999999999998765
No 86
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=88.58 E-value=3 Score=28.99 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=38.0
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC--CeEEEEEecc
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--RFQLEAVGGD 125 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~--~~~l~~~~~~ 125 (158)
.|.+..+.+ ||.|.+|-..|...|+.+.+.+++..+ |++--++++.
T Consensus 4 ~isvlVeN~-~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 4 ILKLQVADQ-VSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred EEEEEEECC-CCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe
Confidence 578889999 999999999999999999999998875 4555555543
No 87
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=87.52 E-value=4.4 Score=31.17 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=33.4
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
.|.|.-+.+ ||.|.+|...|...|+.+.+..+++.+
T Consensus 3 ~isI~ven~-pGvL~rI~~lf~rrg~NI~Sl~v~~t~ 38 (157)
T TIGR00119 3 ILSVLVENE-PGVLSRVAGLFTRRGFNIESLTVGPTE 38 (157)
T ss_pred EEEEEEcCC-CcHHHHHHHHHHhCCceEEEEEEeecC
Confidence 578889999 999999999999999999999999875
No 88
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.48 E-value=3.8 Score=28.53 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=33.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
..+-+..+.+ ||.|.++|..|...|+.+.+..+.+..+
T Consensus 15 tslif~l~~~-pGsL~~vL~~Fa~~~INLt~IeSRP~~~ 52 (90)
T cd04931 15 ISLIFSLKEE-VGALAKVLRLFEEKDINLTHIESRPSRL 52 (90)
T ss_pred EEEEEEcCCC-CcHHHHHHHHHHHCCCCEEEEEeccCCC
Confidence 5677777888 9999999999999999999999998743
No 89
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.62 E-value=7.3 Score=25.89 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=41.9
Q ss_pred EEEEE---eccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHhhhh
Q 031514 79 LINVY---LEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKNVQD 155 (158)
Q Consensus 79 ~I~i~---c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~~~~ 155 (158)
.|+|. .+.. +|.+.+|+++|...|++|.....+. .++++.+.. .+....+.++.+|.+-+.++..
T Consensus 3 ~ItI~~~~~~~~-~g~~~~IF~~La~~~I~VDmI~~s~-~~iSftv~~----------~d~~~~~~~~~~l~~~l~~~~~ 70 (75)
T cd04932 3 LVTLKSPNMLHA-QGFLAKVFGILAKHNISVDLITTSE-ISVALTLDN----------TGSTSDQLLTQALLKELSQICD 70 (75)
T ss_pred EEEEecCCCCCC-cCHHHHHHHHHHHcCCcEEEEeecC-CEEEEEEec----------cccchhHHHHHHHHHHHHhccE
Confidence 45553 3556 8999999999999999998886422 445554322 1122235566677777766544
Q ss_pred c
Q 031514 156 S 156 (158)
Q Consensus 156 ~ 156 (158)
+
T Consensus 71 v 71 (75)
T cd04932 71 V 71 (75)
T ss_pred E
Confidence 3
No 90
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=86.59 E-value=5.2 Score=40.91 Aligned_cols=73 Identities=25% Similarity=0.363 Sum_probs=58.9
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee---CC--eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS---DR--FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~---~~--~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
.+.++|....+ +..|+++|-.|+++||.|+...-..+ +| +.++.+..... ++...+...+++.+.+++.
T Consensus 489 ~~~lkiy~~~~-~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-----~~~~~~~~~~~~~~~~a~~ 562 (1528)
T PF05088_consen 489 RLRLKIYHPGE-PLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-----DGDALDLDDIRERFEEAFE 562 (1528)
T ss_pred eEEEEEEcCCC-CcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-----CCccccHHHHHHHHHHHHH
Confidence 48999999888 99999999999999999999865443 23 66666666554 4556889999999999998
Q ss_pred hhhh
Q 031514 152 NVQD 155 (158)
Q Consensus 152 ~~~~ 155 (158)
+.|.
T Consensus 563 ~v~~ 566 (1528)
T PF05088_consen 563 AVWN 566 (1528)
T ss_pred HHhc
Confidence 8764
No 91
>PRK07334 threonine dehydratase; Provisional
Probab=86.50 E-value=3.8 Score=35.62 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=33.9
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
+.|.|.+..+ +|+|.+|+..|.+.++++.+++..+.
T Consensus 327 v~l~I~~~dr-~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 327 ARLRVDIRDR-PGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred EEEEEEeCCC-CCHHHHHHHHHhhCCCceEEEEEEec
Confidence 8999999999 99999999999999999999998764
No 92
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=86.32 E-value=4.8 Score=31.07 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=36.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC--CeEEEEE
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--RFQLEAV 122 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~--~~~l~~~ 122 (158)
..|.|.-+.+ ||.|.+|...|...|+.+.+..+.+.+ |.+.-++
T Consensus 3 ~~IsV~veN~-pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti 48 (161)
T PRK11895 3 HTLSVLVENE-PGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTI 48 (161)
T ss_pred EEEEEEEcCC-CcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEE
Confidence 3578888999 999999999999999999999988875 4443333
No 93
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.49 E-value=4.4 Score=27.03 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=30.2
Q ss_pred EEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 81 NVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 81 ~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
-++.+.+ ||.|.++|..|+..|+.+.+..+-+..+
T Consensus 4 ~~~l~~~-~g~L~~iL~~f~~~~inl~~IeSRP~~~ 38 (74)
T cd04929 4 IFSLKNE-VGGLAKALKLFQELGINVVHIESRKSKR 38 (74)
T ss_pred EEEcCCC-CcHHHHHHHHHHHCCCCEEEEEeccCCC
Confidence 3444778 9999999999999999999999998743
No 94
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=84.65 E-value=18 Score=28.58 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=49.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC----C---eEEEEEeccccccccCCCCCCCHHHHHHHHHHHH
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD----R---FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAI 150 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~----~---~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai 150 (158)
+.|.|.-.++ ||++..+-..|-++|+++.+.+.-+.+ | |.+.+.+ .. +...+..+++.+|...-
T Consensus 96 ~~v~v~G~Dr-PGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v-~l-------P~~~~~~~L~~~l~~l~ 166 (190)
T PRK11589 96 VWVQVEVADS-PHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITA-HS-------PASQDAANIEQAFKALC 166 (190)
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEE-Ec-------CCCCCHHHHHHHHHHHH
Confidence 7899999999 999999999999999999988877764 2 5555444 22 45667888888776543
No 95
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.37 E-value=5.7 Score=25.48 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=27.0
Q ss_pred EEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 81 NVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 81 ~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
+|.-+.+ ||.|.++++.|.. |.+|...+-...
T Consensus 2 ~v~ipdk-PG~l~~~~~~i~~-~~nI~~~~~~~~ 33 (68)
T cd04885 2 AVTFPER-PGALKKFLELLGP-PRNITEFHYRNQ 33 (68)
T ss_pred EEECCCC-CCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence 5677889 9999999999999 998888776554
No 96
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=83.71 E-value=7.2 Score=25.09 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 89 SGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 89 ~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
||.|.+|+..|..-|+.+.+.+++..+
T Consensus 3 ~GvL~Ri~~vf~rRg~nI~sl~v~~~~ 29 (63)
T PF13710_consen 3 PGVLNRITGVFRRRGFNIESLSVGPTE 29 (63)
T ss_dssp TTHHHHHHHHHHTTT-EECEEEEEE-S
T ss_pred cHHHHHHHHHHhcCCeEEeeEEeeecC
Confidence 999999999999999999999999943
No 97
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=83.45 E-value=4.2 Score=25.70 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=33.0
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee--CCeEEEEEe
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DRFQLEAVG 123 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~--~~~~l~~~~ 123 (158)
+-+..+.+ +|.+.++...|.++|+.+.+..+... ++...-.+.
T Consensus 2 l~v~~~d~-~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~ 46 (73)
T cd04902 2 LVVRNTDR-PGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLS 46 (73)
T ss_pred EEEEeCCC-CCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEE
Confidence 35678889 99999999999999999988876553 344444333
No 98
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=83.27 E-value=0.64 Score=35.89 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=33.5
Q ss_pred chhHhHHHHHHHhhHHhhcCCCCC---CCcccchhhHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDVTNST---SMNKTSIVVDASKYIEELKQ 45 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~~~---K~DKaSIl~dAI~YIk~Lq~ 45 (158)
+-||||=.-||+-|.+||.+.|.. |..|.--|.-|-.||.-|=+
T Consensus 84 vrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 84 VRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 458999999999999999996544 44444457778888877643
No 99
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=82.72 E-value=10 Score=29.66 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=45.0
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee--CCeEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DRFQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
..|.|..+.+ ||+|.+|...|...|+++.+.++.+. .|.+--.+++.. +... .+.+...|.+-+.
T Consensus 3 ~~isvlv~n~-PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~-------~~~~-ieqL~kQL~KLid 69 (174)
T CHL00100 3 HTLSVLVEDE-SGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG-------DDRT-IEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEEeCc-CCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC-------CHHH-HHHHHHHHHHHhH
Confidence 3578889999 99999999999999999999999873 444322222221 1112 5677777666544
No 100
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=82.54 E-value=11 Score=31.71 Aligned_cols=68 Identities=12% Similarity=0.212 Sum_probs=50.4
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC--C-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--R-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~--~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
..+.++++|+.+ +|+...|-.-|-+.|..+++++--... | |.+.+.-... +...+.+.+.+++-....
T Consensus 6 ~~~~LtvsCpd~-~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~-------~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 6 DTFILTVSCPDQ-PGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGE-------GGPLDREALRAAFAPLAE 76 (287)
T ss_pred cceEEEEecCCC-CCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecC-------CCcccHHHHHHHHHHHHH
Confidence 357899999999 999999999999999999998866421 2 5555433222 233777888887776444
No 101
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.99 E-value=7.1 Score=28.36 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=32.3
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
..+-+..+++ ||.|.++|..|...|+.+.+..+-+..
T Consensus 42 tSlifsl~~~-pGsL~~iL~~Fa~~gINLt~IESRP~~ 78 (115)
T cd04930 42 ATLLFSLKEG-FSSLSRILKVFETFEAKIHHLESRPSR 78 (115)
T ss_pred EEEEEEeCCC-CcHHHHHHHHHHHCCCCEEEEECCcCC
Confidence 4555666888 999999999999999999999999974
No 102
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=81.74 E-value=1.6 Score=27.52 Aligned_cols=41 Identities=7% Similarity=0.096 Sum_probs=31.6
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEE
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEA 121 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~ 121 (158)
+-+.+..+ ||++.+|+..|.+.++.+...+..+.+|...-.
T Consensus 2 ~~~~~~d~-~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~ 42 (69)
T cd04901 2 ILHIHKNV-PGVLGQINTILAEHNINIAAQYLQTRGEIGYVV 42 (69)
T ss_pred EEEEecCC-CcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEE
Confidence 34577889 999999999999999999877665544544333
No 103
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=72.17 E-value=32 Score=32.85 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=33.6
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
+.|.|.+..+ +|+|.+|..+|.+.++.+.++++.+.
T Consensus 667 v~I~I~~~Dr-~GlL~dIt~~is~~~~nI~~v~~~~~ 702 (743)
T PRK10872 667 LVVRVTANDR-SGLLRDITTILANEKVNVLGVASRSD 702 (743)
T ss_pred EEEEEEEcCC-CCHHHHHHHHHHHCCCCeEEEEeEEc
Confidence 5789999999 99999999999999999999998775
No 104
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=71.95 E-value=33 Score=24.38 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=38.1
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC--CeEEEEEe
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--RFQLEAVG 123 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~--~~~l~~~~ 123 (158)
...|.+..+.+ ||+|.+|...|..-|+.+.+.+++..+ +++--+++
T Consensus 8 ~~tisvlv~N~-pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtiv 55 (96)
T PRK08178 8 NVILELTVRNH-PGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLL 55 (96)
T ss_pred CEEEEEEEECC-cCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEE
Confidence 47789999999 999999999999999999999888865 44444444
No 105
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=71.02 E-value=20 Score=26.83 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=36.9
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEe
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVG 123 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~ 123 (158)
.|+|..+.+ ||-|..+..+|.+.|+.+-.-++.-.++|-+-=-+
T Consensus 5 QISvFlENk-~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmv 48 (142)
T COG4747 5 QISVFLENK-PGRLASVANKLKEAGINIRAFTIADTGDFGIIRMV 48 (142)
T ss_pred EEEEEecCC-cchHHHHHHHHHHcCCceEEEEeccccCcceEEEE
Confidence 478899999 99999999999999999998888877766544333
No 106
>PRK11899 prephenate dehydratase; Provisional
Probab=70.53 E-value=32 Score=28.74 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=32.6
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
..|-+..+.+ ||.|.++|..|...|++.....+-+..+
T Consensus 195 tsl~~~~~~~-pGaL~~vL~~Fa~~gINLtkIeSRP~~~ 232 (279)
T PRK11899 195 TTFVFRVRNI-PAALYKALGGFATNGVNMTKLESYMVGG 232 (279)
T ss_pred EEEEEEeCCC-CChHHHHHHHHHHcCCCeeeEEeeecCC
Confidence 4455556788 9999999999999999999999999754
No 107
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=70.32 E-value=36 Score=32.04 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=35.2
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC-Ce
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD-RF 117 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~-~~ 117 (158)
+.|.|.+..+ +|+|.+|+.+|-+.+..+.++++...+ ++
T Consensus 611 v~I~I~~~dr-~GlLadI~~~ia~~~~nI~~v~~~~~~~~~ 650 (683)
T TIGR00691 611 VDINIEAVDR-KGVLSDLTTAISENDSNIVSISTKTYGKRE 650 (683)
T ss_pred EEEEEEEecC-CCHHHHHHHHHHHCCCCeEEEEeEEcCCCE
Confidence 5789999999 999999999999999999999998763 53
No 108
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=69.58 E-value=5.1 Score=36.49 Aligned_cols=48 Identities=23% Similarity=0.185 Sum_probs=38.9
Q ss_pred hhHhHHHHHHHhhHHhhcC--CC--C-CCCcccchhhHHHHHHHHHHHHHHHH
Q 031514 3 SREQNKAALYEKLMLLRDV--TN--S-TSMNKTSIVVDASKYIEELKQQVETL 50 (158)
Q Consensus 3 sER~RR~kln~~~~~LRsl--~~--~-~K~DKaSIl~dAI~YIk~Lq~~v~~L 50 (158)
.||=|=+.||+-|..|--+ .+ + +.-.|.-||-.|+.-|-.|+++|++-
T Consensus 533 RERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 533 RERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 4666668899999999877 23 3 33468999999999999999999874
No 109
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=69.58 E-value=20 Score=22.10 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=25.6
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEE
Q 031514 86 KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEA 121 (158)
Q Consensus 86 ~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~ 121 (158)
.. +|...+|+++|.+.|++|.....+. +++++.+
T Consensus 12 ~~-~~~~~~if~~l~~~~i~v~~i~t~~-~~is~~v 45 (62)
T cd04890 12 GE-VGFLRKIFEILEKHGISVDLIPTSE-NSVTLYL 45 (62)
T ss_pred cc-cCHHHHHHHHHHHcCCeEEEEecCC-CEEEEEE
Confidence 45 7899999999999999999885422 4444443
No 110
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=69.56 E-value=17 Score=24.03 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=32.3
Q ss_pred EEEEEecCeEEEEEEeccCC-----CCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 69 VTVETLEKGFLINVYLEKNC-----SGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 69 V~V~~~~~~~~I~i~c~~~~-----~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
|.+...++.+.|.+.++... ..-+..+-++|...|+.+.+.+++.-
T Consensus 29 v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 29 VKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 55555678899999997751 12467888999999999998887654
No 111
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=69.49 E-value=21 Score=21.20 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=26.6
Q ss_pred EEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEee
Q 031514 79 LINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (158)
Q Consensus 79 ~I~i~c~---~~~~gll~~il~aLe~l~L~V~~a~vs~ 113 (158)
.|+|.+. .. +|.+.+++++|.+.++.+.....+.
T Consensus 2 ~i~i~g~~~~~~-~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGT-PGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCC-ccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4566543 45 7899999999999999998876544
No 112
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=69.34 E-value=4.8 Score=22.88 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=12.9
Q ss_pred HhHHHHHHHhhHHhhc
Q 031514 5 EQNKAALYEKLMLLRD 20 (158)
Q Consensus 5 R~RR~kln~~~~~LRs 20 (158)
|+||+.|..+|..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7899999999999985
No 113
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=69.23 E-value=6.8 Score=30.33 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=30.2
Q ss_pred hHhHHHHHHHhhHHhhcCCC---CCCCcc---cchhhHHHHHHHHHHHHH
Q 031514 4 REQNKAALYEKLMLLRDVTN---STSMNK---TSIVVDASKYIEELKQQV 47 (158)
Q Consensus 4 ER~RR~kln~~~~~LRsl~~---~~K~DK---aSIl~dAI~YIk~Lq~~v 47 (158)
||+|-+++|+.|.-|++|.| ..+|.+ ..|=.|-|....|||.+.
T Consensus 30 e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q~qr 79 (173)
T KOG4447|consen 30 ERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQKQR 79 (173)
T ss_pred HHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHHHHH
Confidence 67788999999999999943 333322 233446777777777743
No 114
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=68.36 E-value=44 Score=31.65 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=34.4
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
+.|.|.+..+ +|+|.+|..+|.+.++.+.++++.+.+
T Consensus 627 v~i~I~~~dr-~GlL~dI~~~i~~~~~nI~~v~~~~~~ 663 (702)
T PRK11092 627 AEIKVEMFNH-QGALANLTAAINTTGSNIQSLNTEEKD 663 (702)
T ss_pred EEEEEEEeCC-CCHHHHHHHHHHHCCCCeEEEEEEEcC
Confidence 5789999999 999999999999999999999987765
No 115
>PRK14627 hypothetical protein; Provisional
Probab=68.28 E-value=27 Score=24.79 Aligned_cols=44 Identities=7% Similarity=0.203 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 34 VDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 34 ~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
.+..+..+.+|+++++++.+++.. .|+.+..++-|.|+++|.+.
T Consensus 4 ~~~mkqaq~mQ~km~~~Q~el~~~----------~veg~sggG~VkV~~~G~~~ 47 (100)
T PRK14627 4 RQLMQMAQQMQRQMQKVQEELAAT----------IVEGTAGGGAITVKMNGHRE 47 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----------EEEEEEcCCeEEEEEEcCcc
Confidence 455677788999999999887544 35555555667777777766
No 116
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=67.51 E-value=26 Score=21.46 Aligned_cols=34 Identities=6% Similarity=0.200 Sum_probs=25.6
Q ss_pred EEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEee
Q 031514 79 LINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (158)
Q Consensus 79 ~I~i~c~---~~~~gll~~il~aLe~l~L~V~~a~vs~ 113 (158)
.|.+.+. .. +|.+.+|+++|.+.|+.|.-..-+.
T Consensus 3 ~isvvg~~~~~~-~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGT-PGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCC-ccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3555553 45 8899999999999999997665433
No 117
>PRK14626 hypothetical protein; Provisional
Probab=67.23 E-value=27 Score=25.22 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
+.+-++-.+++|++.++++++++... |+.+.-++-|.|.++|.+.
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~~----------v~g~sggG~VkV~~nG~~e 51 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKEE----------IVVEVGGGMVKVVSNGLGE 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE----------EEEEecCcEEEEEEECCcc
Confidence 56677888999999999999886543 3343334445555555554
No 118
>PRK14623 hypothetical protein; Provisional
Probab=65.27 E-value=32 Score=24.80 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
+.+..+-.+.+|++.++++++++... |+.+.-++-|.|+++|.+.
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~----------v~g~sggG~VkVt~~G~~~ 47 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVL----------IDEQSSDGLLKVTVTANRE 47 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE----------EEEEECCceEEEEEEcCcc
Confidence 45667788999999999998876443 3333334445566666555
No 119
>PRK14625 hypothetical protein; Provisional
Probab=64.30 E-value=34 Score=24.79 Aligned_cols=45 Identities=7% Similarity=0.039 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
+.+.++-.+.+|++.++++++++... |+.+..++-|.|.++|.+.
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~----------v~g~sggG~VkV~~~G~~~ 48 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETT----------VEGTSGGGMVTVTLMGNGE 48 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE----------EEEEECCCeEEEEEecCce
Confidence 45677888899999999999876543 4444444446666666555
No 120
>PRK14622 hypothetical protein; Provisional
Probab=64.26 E-value=33 Score=24.46 Aligned_cols=45 Identities=7% Similarity=0.037 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
+.+..+..+++|++.+++++++... .|+.+..++-|.|+++|.+.
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~----------~v~g~sggG~VkV~~nG~~~ 47 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEI----------AVEAESGGGLVKVAMNGKCE 47 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----------EEEEEECCceEEEEEEcCce
Confidence 4566777888999999998887544 35555555557777777666
No 121
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=62.72 E-value=37 Score=24.05 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
+.+.+.-.+++|+++++++++++... |+.+.-++-+.|.+.+...
T Consensus 7 ~~~m~kqaq~mQ~k~~~~q~eL~~~~----------v~g~sggGlV~V~~~G~~~ 51 (102)
T TIGR00103 7 LGELMKQAQQMQEKMKKLQEEIAQFE----------VTGKSGAGLVTVTINGNLE 51 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE----------EEEEECCCEEEEEEEcCce
Confidence 56778888999999999999876443 3333334445555555444
No 122
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.38 E-value=41 Score=22.61 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=29.3
Q ss_pred EEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEE
Q 031514 79 LINVYL---EKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEA 121 (158)
Q Consensus 79 ~I~i~c---~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~ 121 (158)
+|+|.. +.. +|.+.+|+++|.+.|++|.....+. +++++.+
T Consensus 3 ~i~i~~~~~~~~-~g~~a~IF~~La~~~InVDmI~qs~-~sISftV 46 (78)
T cd04933 3 MLDITSTRMLGQ-YGFLAKVFSIFETLGISVDVVATSE-VSISLTL 46 (78)
T ss_pred EEEEEcCCCCCc-cCHHHHHHHHHHHcCCcEEEEEecC-CEEEEEE
Confidence 455555 345 8999999999999999998886422 4444443
No 123
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=61.47 E-value=53 Score=27.66 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=45.4
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHH
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQA 149 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~a 149 (158)
...|-+.-+.+ ||.|.++|..|...|++.....+-+..+ +--+.+-++.. ...+...+++||...
T Consensus 194 kTsl~f~~~n~-PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e-------g~~~~~~v~~AL~el 259 (279)
T COG0077 194 KTSLIFSVPNK-PGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE-------GHIDDPLVKEALEEL 259 (279)
T ss_pred eEEEEEEcCCC-CchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe-------cCcCcHhHHHHHHHH
Confidence 34555566688 9999999999999999999999999864 44444444442 223335667766543
No 124
>PRK00153 hypothetical protein; Validated
Probab=60.49 E-value=43 Score=23.61 Aligned_cols=25 Identities=8% Similarity=0.340 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTS 57 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (158)
+.+-++-.+++|++++++++++...
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~ 29 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQM 29 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5667788899999999999987654
No 125
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=59.20 E-value=5.4 Score=32.96 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=36.6
Q ss_pred hhHhHHHHHHHhhHHhhcC-CC---CCCCcccchhhHHHHHHHHHHHHH
Q 031514 3 SREQNKAALYEKLMLLRDV-TN---STSMNKTSIVVDASKYIEELKQQV 47 (158)
Q Consensus 3 sER~RR~kln~~~~~LRsl-~~---~~K~DKaSIl~dAI~YIk~Lq~~v 47 (158)
-||+|=-.||+-|..||.+ |. ..|+-|.=.|.=|=+||..|++-.
T Consensus 79 RER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 79 RERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 3677778899999999999 52 678888888989999998887543
No 126
>PRK14621 hypothetical protein; Provisional
Probab=59.10 E-value=45 Score=24.18 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
+.+..+-.+++|++.++++++++.. .|+.+.-++-|.|+++|.+.
T Consensus 6 m~~mmkqaq~mQ~km~~~Q~eL~~~----------~v~g~sGgG~VkV~~~G~~~ 50 (111)
T PRK14621 6 LGDMMKQIQQAGEKMQDVQKQLEKL----------VAHGEAGGGMVKASVNGKQK 50 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc----------EEEEEECCceEEEEEEcCce
Confidence 5567788889999999999887543 24444445457777777666
No 127
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=57.51 E-value=45 Score=20.84 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEE
Q 031514 86 KNCSGLLVSVLEAFEDLGLEVLD 108 (158)
Q Consensus 86 ~~~~gll~~il~aLe~l~L~V~~ 108 (158)
.. +|.+.+++.+|.+.|+.+..
T Consensus 13 ~~-~gi~~~if~aL~~~~I~v~~ 34 (64)
T cd04937 13 GV-PGVMAKIVGALSKEGIEILQ 34 (64)
T ss_pred CC-cCHHHHHHHHHHHCCCCEEE
Confidence 45 89999999999999999963
No 128
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=57.45 E-value=43 Score=21.73 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=24.4
Q ss_pred EEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEE
Q 031514 79 LINVYL---EKNCSGLLVSVLEAFEDLGLEVLDAR 110 (158)
Q Consensus 79 ~I~i~c---~~~~~gll~~il~aLe~l~L~V~~a~ 110 (158)
.|+|.+ ... +|.+.+++++|.+.|+.+....
T Consensus 3 ~Vsi~g~~l~~~-~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGA-HGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCC-ccHHHHHHHHHHHcCCeEEEEE
Confidence 455533 345 8999999999999999997775
No 129
>PRK14629 hypothetical protein; Provisional
Probab=57.03 E-value=51 Score=23.47 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 35 DASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 35 dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
+..+-.+++|+++++++++++... |+.+..++-+.|+++|.+.
T Consensus 7 ~~mkqaq~mQ~km~~~Q~eL~~~~----------veg~aggGlVkV~~nG~~~ 49 (99)
T PRK14629 7 DFLKNMSSFKDNIDNIKKEISQIV----------VCGRAGSDVVVVEMNGEFN 49 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccE----------EEEEecCCEEEEEEEcCcc
Confidence 456777889999999998875442 4444444446666666665
No 130
>PRK08198 threonine dehydratase; Provisional
Probab=55.73 E-value=79 Score=27.29 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=32.4
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~ 113 (158)
.+.+.|.-+.+ ||.|.++++.|-+.|.+|.+.+...
T Consensus 327 ~~~l~v~l~D~-PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 327 YLKLRVRLPDR-PGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred EEEEEEEeCCC-CCHHHHHHHHHhhCCCceEEEEEEE
Confidence 37899999999 9999999999999999998887664
No 131
>PRK14624 hypothetical protein; Provisional
Probab=55.32 E-value=58 Score=23.81 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
+.+..+-.+++|++.++++++++... |+.+.-++-|.|+++|.+.
T Consensus 8 m~~~mkqAq~mQ~km~~~QeeL~~~~----------v~g~sGgG~VkV~~nG~~~ 52 (115)
T PRK14624 8 MSEALSNMGNIREKMEEVKKRIASIR----------VVGDAGAGMVTVTATGEGQ 52 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE----------EEEEECCcEEEEEEEcCcc
Confidence 66778888899999999988875442 4444445556677777666
No 132
>PRK06382 threonine dehydratase; Provisional
Probab=55.13 E-value=63 Score=28.10 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=31.1
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
+.+.|.-+.+ ||.|.++++.|.+.+.+|++....
T Consensus 331 ~rl~v~v~D~-pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 331 VRIECNIPDR-PGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred EEEEEEcCCC-CCHHHHHHHHHhcCCCcEEEEEEe
Confidence 7888999999 999999999999999999988764
No 133
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.02 E-value=58 Score=21.40 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=25.6
Q ss_pred ccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEE
Q 031514 85 EKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLE 120 (158)
Q Consensus 85 ~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~ 120 (158)
+.. +|.+.+|+++|...|++|.....+. +++++.
T Consensus 12 ~~~-~g~~~~IF~~La~~~I~vDmI~~s~-~~isft 45 (75)
T cd04935 12 WQQ-VGFLADVFAPFKKHGVSVDLVSTSE-TNVTVS 45 (75)
T ss_pred CCc-cCHHHHHHHHHHHcCCcEEEEEeCC-CEEEEE
Confidence 345 8899999999999999999886422 444444
No 134
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=54.87 E-value=69 Score=22.20 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=37.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee--CC-eEEEEEe
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DR-FQLEAVG 123 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~--~~-~~l~~~~ 123 (158)
+.+.+....+ |+.|.++|...+.-|+.|...+.++. .| ..++.++
T Consensus 4 yqldl~ar~~-pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 4 YQLDLSARFN-PETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred EEEeeeccCC-hHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 4567788889 99999999999999999999999996 23 5666555
No 135
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=53.89 E-value=41 Score=19.34 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEee
Q 031514 89 SGLLVSVLEAFEDLGLEVLDARVSC 113 (158)
Q Consensus 89 ~gll~~il~aLe~l~L~V~~a~vs~ 113 (158)
+|.+.+++++|.+.++.+.....+.
T Consensus 14 ~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 14 PGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998776543
No 136
>PRK03762 hypothetical protein; Provisional
Probab=53.78 E-value=66 Score=23.01 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
++.-.+-.+++|+++++++++++... |+.+..++-+.|.+.|.+.
T Consensus 7 ~~~m~kqaqkmQ~km~~~Q~el~~~~----------v~g~sggGlVkV~~nG~~~ 51 (103)
T PRK03762 7 FSKLGEMLEQMQKKAKQLEEENANKE----------FTAKSGGGLVSVSANGKGE 51 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE----------EEEEEcCceEEEEEEcCce
Confidence 34455667889999999998875442 4444444456666666655
No 137
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=53.68 E-value=87 Score=26.74 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=31.2
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
+.+.|.-+.+ ||.|.++++.+.+.|.+|++....
T Consensus 306 ~~l~v~l~D~-pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 306 VRIETVLPDR-PGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEEeCCC-CCHHHHHHHHHhcCCCcEEEEEee
Confidence 6899999999 999999999999999999988655
No 138
>PRK11898 prephenate dehydratase; Provisional
Probab=53.15 E-value=1.1e+02 Score=25.58 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=31.6
Q ss_pred EEEEEEecc-CCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 78 FLINVYLEK-NCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 78 ~~I~i~c~~-~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
..+-++.+. + ||.|.++|..|...|+.+.+..+.+..+
T Consensus 197 tslif~l~~~~-pGsL~~~L~~F~~~~INLt~IeSRP~~~ 235 (283)
T PRK11898 197 TSLVLTLPNNL-PGALYKALSEFAWRGINLTRIESRPTKT 235 (283)
T ss_pred EEEEEEeCCCC-ccHHHHHHHHHHHCCCCeeeEecccCCC
Confidence 445566644 6 9999999999999999999999998753
No 139
>PRK00587 hypothetical protein; Provisional
Probab=51.80 E-value=70 Score=22.73 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
+.+..+-.+.+|++.++++++++..+ |+.+. |+-+.|+++|.+.
T Consensus 3 ~~~lmkqaqkmQ~km~~~QeeL~~~~----------v~g~~-gGlVkV~~nG~~~ 46 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEKE----------FDFDY-KKYILIKIKGNLN 46 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE----------EEEEc-CCeEEEEEEcCcc
Confidence 34566778889999999998876543 44443 4446666666665
No 140
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.87 E-value=72 Score=21.25 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=23.3
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEE
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDAR 110 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~ 110 (158)
..+.|.-+.+ ||.|.++++.|- +-+|....
T Consensus 2 ~vl~v~ipD~-PG~L~~ll~~l~--~anI~~~~ 31 (85)
T cd04906 2 ALLAVTIPER-PGSFKKFCELIG--PRNITEFN 31 (85)
T ss_pred eEEEEecCCC-CcHHHHHHHHhC--CCceeEEE
Confidence 4678888999 999999999998 44444433
No 141
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=50.49 E-value=45 Score=30.13 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=36.1
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEE
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEA 121 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~ 121 (158)
.+.|.|..| -|+..+|+..|-..++++....|.+.+...+++
T Consensus 2 rl~~~~~dr-~g~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~ 43 (520)
T PRK10820 2 RLEVFCEDR-LGLTRELLDLLVLRSIDLRGIEIDPIGRIYLNF 43 (520)
T ss_pred eEEEEeecc-ccHHHHHHHHHHhcCCCccEEEEcCCCeEEEeC
Confidence 578999999 999999999999999999999997765444443
No 142
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=50.47 E-value=35 Score=25.98 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=33.4
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEE-eeeCC
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARV-SCSDR 116 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~v-s~~~~ 116 (158)
.+.+.+.-+++ .|.|+++|+++-..++.|++.+= .+.+|
T Consensus 72 i~TL~l~ledr-~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g 111 (150)
T COG4492 72 IITLSLSLEDR-VGILSDVLDVIAREEINVLTIHQTIPLQG 111 (150)
T ss_pred EEEEEEEEhhh-hhhHHHHHHHHHHhCCcEEEEecccccCc
Confidence 48899999999 99999999999999999998753 34566
No 143
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.46 E-value=36 Score=23.03 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEE
Q 031514 89 SGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAV 122 (158)
Q Consensus 89 ~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~ 122 (158)
-|.+.++|+.|+++|+.+-+.-.+ .|++++.+.
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSG-ID~~Siii~ 47 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSG-IDDISIIIR 47 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCC-CccEEEEEE
Confidence 689999999999999999887632 455666543
No 144
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=47.65 E-value=1.3e+02 Score=26.37 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=31.3
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
.+-+.-+++ ||.|.++|..|...|++.....+-+..+
T Consensus 299 sl~~~~~~~-pGaL~~~L~~Fa~~giNLtkIeSRP~~~ 335 (386)
T PRK10622 299 TLLMATGQQ-AGALVEALLVLRNHNLIMTKLESRPIHG 335 (386)
T ss_pred EEEEEcCCC-CcHHHHHHHHHHHcCCCeeEEEeeecCC
Confidence 333444788 9999999999999999999999998764
No 145
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=47.05 E-value=1.6e+02 Score=24.06 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=32.5
Q ss_pred CeEEEEEEeccCCCC--HHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 76 KGFLINVYLEKNCSG--LLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 76 ~~~~I~i~c~~~~~g--ll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
..+.++|.|.+. ++ ....+++.|++.++.+.+.++...+
T Consensus 141 ~~~~~~v~~~~~-~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 141 KRYILKVTCNKE-DESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred eEEEEEEEEcCc-chhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 357899999887 54 5788999999999999999997663
No 146
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=45.96 E-value=84 Score=20.58 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=27.7
Q ss_pred EEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEE
Q 031514 80 INVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLE 120 (158)
Q Consensus 80 I~i~c~---~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~ 120 (158)
|+|.+. .. +|.+.+|+++|...|++|.....+. +++++.
T Consensus 4 I~i~~~~m~~~-~g~~~~If~~la~~~I~vd~I~~s~-~~isft 45 (73)
T cd04934 4 INIHSNKKSLS-HGFLARIFAILDKYRLSVDLISTSE-VHVSMA 45 (73)
T ss_pred EEEEcccCccc-cCHHHHHHHHHHHcCCcEEEEEeCC-CEEEEE
Confidence 444443 34 7899999999999999998886422 444444
No 147
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.39 E-value=76 Score=19.90 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 89 SGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 89 ~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
+|.+.+++++|.+.|+.|.-..-++.
T Consensus 14 ~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 14 SLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 78999999999999999977665554
No 148
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=44.75 E-value=26 Score=18.48 Aligned_cols=16 Identities=13% Similarity=0.569 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 031514 40 IEELKQQVETLNQEIG 55 (158)
Q Consensus 40 Ik~Lq~~v~~Le~e~~ 55 (158)
|..|+.++.+|+.++.
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678889999988764
No 149
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.71 E-value=71 Score=19.38 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=24.9
Q ss_pred EEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 79 LINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 79 ~I~i~c~---~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
+|.+.+. .. +|.+.+++.+|.+.++++.-...+
T Consensus 3 lisivg~~~~~~-~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 3 LIMVVGEGMKNT-VGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred EEEEEcCCCCCC-ccHHHHHHHHHHHCCCCEEEEEec
Confidence 3445553 45 899999999999999999766543
No 150
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=44.57 E-value=44 Score=31.63 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=47.6
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
+..+.|....+ +|+|..|+.+|. ++.-+.++|.+.-.+..+.... ..+-..+..++..++.
T Consensus 631 ~~~~e~r~~dr-~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~---------~~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 631 GNILEVRTEDR-RGALGALLGVLP----DLLWITASTPGATMIVQAALKP---------GFDRATVERDVTRVLA 691 (693)
T ss_pred CcEEEEEeCcc-ccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC---------cccHHHHHHHHHHHHh
Confidence 46789999999 999999999999 8999999999987777766553 1234556666666653
No 151
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.54 E-value=79 Score=19.31 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=22.2
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEee
Q 031514 86 KNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (158)
Q Consensus 86 ~~~~gll~~il~aLe~l~L~V~~a~vs~ 113 (158)
.. +|.+.+++++|.+.|+++.-..-++
T Consensus 13 ~~-~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NM-IGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CC-cCHHHHHHHHHHHCCCCEEEEEecC
Confidence 35 7899999999999999997665444
No 152
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=42.32 E-value=89 Score=29.77 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=34.7
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
+.|.|.-..+ +|+|.+|+++|-+.+..+.+++..+.++
T Consensus 628 ~~i~v~~~~r-~glL~~i~~~i~~~~~ni~~v~~~~~~~ 665 (701)
T COG0317 628 VDIEIRAYDR-SGLLRDVSQVLANEKINVLGVNTRSDKD 665 (701)
T ss_pred EEEEEEEccc-cchHHHHHHHHHhCCCceEEeeccccCC
Confidence 6788999999 9999999999999999999999998643
No 153
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=42.29 E-value=87 Score=19.86 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=26.9
Q ss_pred EEEEEEec----cCCCCHHHHHHHHHHhCCCeEEEEE
Q 031514 78 FLINVYLE----KNCSGLLVSVLEAFEDLGLEVLDAR 110 (158)
Q Consensus 78 ~~I~i~c~----~~~~gll~~il~aLe~l~L~V~~a~ 110 (158)
..|+|..+ .. +|.+.++..+|.+-|+.|...+
T Consensus 7 ~~i~v~g~g~~~~~-~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDV-PGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTS-HHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCc-ccHHHHHHHHHHHCCCCEEEEE
Confidence 56788887 35 8999999999999999998877
No 154
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=41.85 E-value=90 Score=19.77 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 89 SGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 89 ~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
+|.+.+++++|.+.|+++...+.++.
T Consensus 15 ~gv~~ki~~~L~~~~I~v~~i~~~~s 40 (66)
T cd04915 15 PGVLARGLAALAEAGIEPIAAHQSMR 40 (66)
T ss_pred chHHHHHHHHHHHCCCCEEEEEecCC
Confidence 78999999999999999977765553
No 155
>PRK06349 homoserine dehydrogenase; Provisional
Probab=40.51 E-value=1.7e+02 Score=25.66 Aligned_cols=38 Identities=11% Similarity=0.335 Sum_probs=32.5
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
..++|++....+ ||.|.+|-..|.+.++++.+......
T Consensus 347 ~~yylRl~v~d~-pGvLa~I~~~f~~~~vsI~si~q~~~ 384 (426)
T PRK06349 347 SKYYLRLLVADK-PGVLAKIAAIFAENGISIESILQKGA 384 (426)
T ss_pred eeEEEEEEecCC-cchHHHHHHHHhhcCccEEEEEeccC
Confidence 358999999999 99999999999999999887654443
No 156
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=40.51 E-value=34 Score=28.62 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=34.3
Q ss_pred hhHhHHHHHHHhhHHhhcCCC----CCCCcccchhhHHHHHHHHHHHHH
Q 031514 3 SREQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQV 47 (158)
Q Consensus 3 sER~RR~kln~~~~~LRsl~~----~~K~DKaSIl~dAI~YIk~Lq~~v 47 (158)
-||+|=..||.-|..||-++| .+|..|---|.-|-.||--|=..+
T Consensus 181 rErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 181 RERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred HHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 467777899999999999965 345566667888888887776554
No 157
>PRK14126 cell division protein ZapA; Provisional
Probab=38.19 E-value=77 Score=21.67 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=32.6
Q ss_pred HHHHHhhHHhhcCCCCCCCcccchhh--HHHHHHHHHHHHHHHHHHhhc
Q 031514 9 AALYEKLMLLRDVTNSTSMNKTSIVV--DASKYIEELKQQVETLNQEIG 55 (158)
Q Consensus 9 ~kln~~~~~LRsl~~~~K~DKaSIl~--dAI~YIk~Lq~~v~~Le~e~~ 55 (158)
.-+|+++..++.-.|.-..+|++||. ...+=.-.++++++.|+++.+
T Consensus 34 ~~vd~km~ei~~~~~~ls~~~iAVLaALNia~El~k~~~~~~~l~~~~~ 82 (85)
T PRK14126 34 AIVDDKMRELNEKNPSLDTSKLAVLTAVNVIHDYIKLKEEYEKLKESMT 82 (85)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999887777788998876 233333345777777776553
No 158
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=37.44 E-value=1e+02 Score=27.62 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=32.2
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
..|-++.+.+ +|.|.++|..|...|+++.+..+-+..
T Consensus 17 TSLiFsL~d~-pGaL~~vL~vFa~~gINLthIESRPsk 53 (436)
T TIGR01268 17 TSLIFSLKEE-AGALAETLKLFQAHDVNLTHIESRPSK 53 (436)
T ss_pred EEEEEEcCCC-CcHHHHHHHHHHHCCCCeeEEecccCC
Confidence 4566666888 999999999999999999999998864
No 159
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=37.13 E-value=76 Score=26.22 Aligned_cols=49 Identities=6% Similarity=0.223 Sum_probs=31.9
Q ss_pred HHHHHHHhhHHhhcCCCCCC-CcccchhhHHHH------------------HHHHHHHHHHHHHHhhc
Q 031514 7 NKAALYEKLMLLRDVTNSTS-MNKTSIVVDASK------------------YIEELKQQVETLNQEIG 55 (158)
Q Consensus 7 RR~kln~~~~~LRsl~~~~K-~DKaSIl~dAI~------------------YIk~Lq~~v~~Le~e~~ 55 (158)
=|.-|...|..||......| -+=-.+|.+.|. =||.++.||++||.++.
T Consensus 5 E~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~ 72 (247)
T PF09849_consen 5 ERQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQ 72 (247)
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999853322 112233333332 27899999999999863
No 160
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.10 E-value=24 Score=27.15 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=38.8
Q ss_pred HHHHHHHhhHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHhh
Q 031514 7 NKAALYEKLMLLRDVTNSTSMNKTSIVVDASKYIEELKQQVETLNQEI 54 (158)
Q Consensus 7 RR~kln~~~~~LRsl~~~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e~ 54 (158)
.+..+.....++|.+.+...-|+++..+.=-+|++.++++++++++.+
T Consensus 123 ~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~ 170 (174)
T COG1076 123 IKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAY 170 (174)
T ss_pred hhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 345556666777777765568999999999999999999999998754
No 161
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.48 E-value=94 Score=18.43 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEE
Q 031514 89 SGLLVSVLEAFEDLGLEVLDARV 111 (158)
Q Consensus 89 ~gll~~il~aLe~l~L~V~~a~v 111 (158)
+|.+.+++.+|.+.++.+...+.
T Consensus 14 ~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 14 PGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEc
Confidence 78999999999999999987764
No 162
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.76 E-value=88 Score=19.59 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=19.3
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEE
Q 031514 86 KNCSGLLVSVLEAFEDLGLEVLDAR 110 (158)
Q Consensus 86 ~~~~gll~~il~aLe~l~L~V~~a~ 110 (158)
.. +|.+.+++++|.+.++.++...
T Consensus 12 ~~-~gv~~~~~~~L~~~~i~~i~~~ 35 (63)
T cd04920 12 SL-LHKLGPALEVFGKKPVHLVSQA 35 (63)
T ss_pred cC-ccHHHHHHHHHhcCCceEEEEe
Confidence 45 8999999999999887775444
No 163
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=35.64 E-value=1.7e+02 Score=23.07 Aligned_cols=63 Identities=10% Similarity=0.207 Sum_probs=45.6
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee--eCC-----eEEEEEeccccccccCCCCCCCHHHHHHHHHH
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC--SDR-----FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQ 148 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~--~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ 148 (158)
-+.+.+...+| ||++-++..-|..+|+.+.+-..-+ ..+ |.+++... -+...+...|++++..
T Consensus 92 ~v~v~v~a~Dr-pgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~--------lPa~~~i~~l~~~f~a 161 (176)
T COG2716 92 PVWVYVDANDR-PGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITAR--------LPANLSISALRDAFEA 161 (176)
T ss_pred eEEEEEEecCC-ccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhcc--------CCCcCcHHHHHHHHHH
Confidence 37889999999 9999999999999998776655444 333 55554331 2567778888777653
No 164
>PRK14628 hypothetical protein; Provisional
Probab=35.46 E-value=1.7e+02 Score=21.33 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
+..+-+--+++|++.++++++++.. +|+.+.-++-|.|+++|.+.
T Consensus 21 m~q~~k~qq~mq~k~~elqe~l~~~----------~v~g~sggG~VkV~~nG~~e 65 (118)
T PRK14628 21 LKDFAKMQEELQKKIQELEESFSQI----------EVEASVGGGAVRIVATCDRR 65 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHce----------EEEEEecCceEEEEEEcCce
Confidence 4445555555666666666655433 24444444446666666665
No 165
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=35.34 E-value=2.2e+02 Score=24.53 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=54.1
Q ss_pred hHHHHHHHhhHHhhcC-C-CCCCCcc-----cchhhHHHHHHHHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeE
Q 031514 6 QNKAALYEKLMLLRDV-T-NSTSMNK-----TSIVVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGF 78 (158)
Q Consensus 6 ~RR~kln~~~~~LRsl-~-~~~K~DK-----aSIl~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~ 78 (158)
+|-+++=.+|..||+. | |++-.|- ++...+..+|++.|++-+++|+..-. . + .++.
T Consensus 172 N~~R~~~~~l~~l~~~~p~pitg~e~~~~~~~~~~~~~~e~~~~L~~~l~el~~~~~--~--------~-------~~~~ 234 (380)
T TIGR02263 172 NDNRKLIQALYGLRADEPWKVPSADLYLLLRAGLVIPVEEHNQMLADYLAAARKQEA--P--------I-------KDNC 234 (380)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhccc--c--------C-------CCCC
Confidence 3344555677788888 6 4664542 34456788999999999998886321 0 0 1121
Q ss_pred EEEEE-eccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 79 LINVY-LEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 79 ~I~i~-c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
.|=++ |+-. ....+++..+++.|..|+.-. .|.+
T Consensus 235 RIl~tG~~~~--~~~~k~~~~iE~~G~~VV~dd-~c~g 269 (380)
T TIGR02263 235 RVIICGMFCE--QPPLNLIKSIELSGCYIVDDD-FIIV 269 (380)
T ss_pred EEEEECcCCC--CchHHHHHHHHHCCCEEEEec-CCcc
Confidence 11111 2222 223789999999999999544 4444
No 166
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=34.79 E-value=1.8e+02 Score=22.63 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=44.5
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC--eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHh
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR--FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKN 152 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~ 152 (158)
.+.+.-... ||.|.++...|-..|+.+-+..+...+. .+.-.+++. ++.-..+++...|++.+..
T Consensus 6 ilsvlv~ne-~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--------g~~~~~EQi~kQL~kLidV 72 (163)
T COG0440 6 ILSLLVENE-PGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--------GDEQVLEQIIKQLNKLIDV 72 (163)
T ss_pred EEEEEEECC-CCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--------CCcchHHHHHHHHHhhccc
Confidence 456677888 9999999999999999999999888753 443333322 2223355555556555543
No 167
>smart00338 BRLZ basic region leucin zipper.
Probab=34.43 E-value=36 Score=21.68 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 031514 38 KYIEELKQQVETLNQEIGT 56 (158)
Q Consensus 38 ~YIk~Lq~~v~~Le~e~~~ 56 (158)
.|+.+|+.++..|+.+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~ 44 (65)
T smart00338 26 AEIEELERKVEQLEAENER 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4888888888888776443
No 168
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.32 E-value=36 Score=21.64 Aligned_cols=19 Identities=47% Similarity=0.719 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 031514 37 SKYIEELKQQVETLNQEIG 55 (158)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~ 55 (158)
-.|+.+|+.++..|+.+..
T Consensus 25 k~~~~~Le~~~~~L~~en~ 43 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENE 43 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3688888888888887644
No 169
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=33.60 E-value=1.1e+02 Score=18.55 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=22.3
Q ss_pred ccCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 85 EKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 85 ~~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
+.. +|.+.+++.+|.+.|+.+.-..-+
T Consensus 10 ~~~-~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 10 PDK-PGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCC-CcHHHHHHHHHHHcCCeEEEEEeC
Confidence 556 899999999999999999755433
No 170
>PRK08210 aspartate kinase I; Reviewed
Probab=32.44 E-value=2.1e+02 Score=24.69 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=30.2
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
+-..|+|......+|.+.+|+++|.+.|+.|.....+
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 4467888775544899999999999999999887555
No 171
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=32.40 E-value=1.5e+02 Score=19.98 Aligned_cols=42 Identities=31% Similarity=0.428 Sum_probs=28.1
Q ss_pred EEEEEeccCCCCHH----HHHHHHHHhCCCe-EEEEEEeeeCCeEEEE
Q 031514 79 LINVYLEKNCSGLL----VSVLEAFEDLGLE-VLDARVSCSDRFQLEA 121 (158)
Q Consensus 79 ~I~i~c~~~~~gll----~~il~aLe~l~L~-V~~a~vs~~~~~~l~~ 121 (158)
.++|.-..+ +|++ --|..+|..+|++ |.++.+...=.|.+++
T Consensus 2 ~~~V~V~~K-~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK~~~l~~~~ 48 (80)
T PF02700_consen 2 KVRVEVTLK-PGVLDPQGEAIKRALHRLGYDGVKDVRVGKYIELELEA 48 (80)
T ss_dssp EEEEEEEE--TTS--HHHHHHHHHHHHTT-TTEEEEEEEEEEEEEEE-
T ss_pred EEEEEEEEC-CCCcCcHHHHHHHHHHHcCCcccCcEEEEEEEEEEEeC
Confidence 456666677 7765 5689999999999 8888877665555553
No 172
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=32.18 E-value=99 Score=27.11 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=41.8
Q ss_pred CeEEEEEecCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEe
Q 031514 67 PVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVG 123 (158)
Q Consensus 67 p~V~V~~~~~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~ 123 (158)
|.+..........|-|.=..+ ||.+.+|...|-+.++.+-+.++...++..+.++.
T Consensus 328 ~~~~~~~~~~~~rlii~h~d~-pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie 383 (409)
T PRK11790 328 PEVSLPEHPGGHRLLHIHENR-PGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVID 383 (409)
T ss_pred cccccCCCCCCceEEEEeCCC-CCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEE
Confidence 444433322446777777888 99999999999999999998888887775555443
No 173
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=32.13 E-value=65 Score=21.44 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=23.2
Q ss_pred eEEEEEec-CeEEEEEEeccCCCCHHHHHHHHHHh
Q 031514 68 VVTVETLE-KGFLINVYLEKNCSGLLVSVLEAFED 101 (158)
Q Consensus 68 ~V~V~~~~-~~~~I~i~c~~~~~gll~~il~aLe~ 101 (158)
+-+|.... +++.+.|+|+++ .-+|-.|=..+++
T Consensus 6 dW~Vsrt~dGdYrL~itcp~K-e~LlqSIEgmi~~ 39 (71)
T PF11619_consen 6 DWEVSRTLDGDYRLVITCPKK-EWLLQSIEGMIKE 39 (71)
T ss_dssp S-EEEEETTTCEEEEEEESSH-HHHHHHHHHHHHH
T ss_pred cceeeeccCCceEEEEecCcH-HHHHHHHHHHHHH
Confidence 45677764 569999999999 7666666555543
No 174
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.83 E-value=54 Score=20.88 Aligned_cols=41 Identities=15% Similarity=0.341 Sum_probs=30.2
Q ss_pred HhHHHHHHHhhHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 031514 5 EQNKAALYEKLMLLRDVTNSTSMNKTSIVVDASKYIEELKQQVETLN 51 (158)
Q Consensus 5 R~RR~kln~~~~~LRsl~~~~K~DKaSIl~dAI~YIk~Lq~~v~~Le 51 (158)
|.-|=....++..+..+.-..+.| +|.+||+++-..++...
T Consensus 17 R~~RHD~~NhLqvI~gllqlg~~~------~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLGKYE------EAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HH------HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHH
Confidence 555666777888888887666665 46899999998888773
No 175
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.69 E-value=1.2e+02 Score=18.23 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=24.5
Q ss_pred EEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 79 LINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 79 ~I~i~c~---~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
.|.|.+. .. +|.+.+++++|.+.++.+.-..-+
T Consensus 3 ~isivg~~~~~~-~~~~~~i~~~L~~~~I~v~~i~q~ 38 (66)
T cd04924 3 VVAVVGSGMRGT-PGVAGRVFGALGKAGINVIMISQG 38 (66)
T ss_pred EEEEECCCCCCC-ccHHHHHHHHHHHCCCCEEEEEec
Confidence 3444443 45 789999999999999999666543
No 176
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=30.91 E-value=70 Score=23.97 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=22.8
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEE
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLD 108 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~ 108 (158)
+-|.-+.+ ||.|.+|+++|-+.++.+--
T Consensus 72 laVEmeD~-PG~l~~I~~vl~d~diNldY 99 (142)
T COG4747 72 LAVEMEDV-PGGLSRIAEVLGDADINLDY 99 (142)
T ss_pred EEEEecCC-CCcHHHHHHHHhhcCcCcee
Confidence 44566899 99999999999999766543
No 177
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=30.29 E-value=75 Score=24.73 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=30.2
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
+.+-|.-+.+ ||.|+++|+-|-+.|-++++.--+--
T Consensus 6 itldIEL~D~-PGQLl~vLqPls~~g~NiItIiH~r~ 41 (170)
T COG2061 6 ITLDIELKDK-PGQLLKVLQPLSKTGANIITIIHSRD 41 (170)
T ss_pred EEEEEEecCC-CcchhhhhcchhhcCccEEEEEeecC
Confidence 4567778899 99999999999999999888765543
No 178
>PRK07431 aspartate kinase; Provisional
Probab=29.51 E-value=4.1e+02 Score=24.25 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=42.8
Q ss_pred EEEecCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccccccccCCCCCCCHHHHHHHHH
Q 031514 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDFLQHIEGHADGIDAQVVKEAVL 147 (158)
Q Consensus 71 V~~~~~~~~I~i~c~---~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~ 147 (158)
++...+-..|.|... .. +|.+.+++.+|.+.++++.... + .+..+.+.+.+ -+.+...++|+
T Consensus 342 i~~~~~~a~IsvvG~gm~~~-~gi~~ki~~aL~~~~I~i~~i~-s--Se~~Is~vv~~-----------~d~~~av~~Lh 406 (587)
T PRK07431 342 VLVETNVAKLSISGAGMMGR-PGIAAKMFDTLAEAGINIRMIS-T--SEVKVSCVIDA-----------EDGDKALRAVC 406 (587)
T ss_pred EEEeCCeEEEEEECCCcccC-ccHHHHHHHHHHHCCCcEEEEE-c--CCCEEEEEEcH-----------HHHHHHHHHHH
Confidence 445555567777775 45 8999999999999999998777 2 23333332222 13555666777
Q ss_pred HHH
Q 031514 148 QAI 150 (158)
Q Consensus 148 ~ai 150 (158)
+.+
T Consensus 407 ~~f 409 (587)
T PRK07431 407 EAF 409 (587)
T ss_pred HHh
Confidence 766
No 179
>COG3474 Cytochrome c2 [Energy production and conversion]
Probab=29.03 E-value=61 Score=24.47 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=25.6
Q ss_pred HHHHHhhHHhhcCCCCCCCc-----ccchhhHHHHHHHHH
Q 031514 9 AALYEKLMLLRDVTNSTSMN-----KTSIVVDASKYIEEL 43 (158)
Q Consensus 9 ~kln~~~~~LRsl~~~~K~D-----KaSIl~dAI~YIk~L 43 (158)
+.|+..|..=+..+|-|||- |---..|-|.|++.+
T Consensus 91 ~~L~~fL~~Pkk~vpGTkM~faGlkk~~dradlIAYLk~~ 130 (135)
T COG3474 91 DNLDEFLTAPKKYVPGTKMAFAGLKKDQDRADLIAYLKSL 130 (135)
T ss_pred HHHHHHHhChhhhCCCcceeecCCCCHHHHHHHHHHHHhc
Confidence 34666666666678889984 555688999999865
No 180
>PRK08526 threonine dehydratase; Provisional
Probab=28.77 E-value=3.2e+02 Score=23.84 Aligned_cols=36 Identities=11% Similarity=0.259 Sum_probs=32.3
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~ 113 (158)
.+.+.+.-+.+ ||.|.+++..+-+.+.+|....-..
T Consensus 326 ~~~~~~~~~d~-pg~l~~~~~~~~~~~~~i~~~~~~r 361 (403)
T PRK08526 326 KMKLHVTLVDK-PGALMGLTDILKEANANIVKIDYDR 361 (403)
T ss_pred EEEEEEEcCCC-CCHHHHHHHHHccCCCcEEEEEEEe
Confidence 37899999999 9999999999999999999887744
No 181
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=28.59 E-value=2.4e+02 Score=25.60 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=34.6
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee--CCeEEEEEe
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DRFQLEAVG 123 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~--~~~~l~~~~ 123 (158)
++..+-+....+ ||.+..+...|-+.++.+-+.+++-. ++..+-++.
T Consensus 451 ~~~~li~~~~D~-pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~ 499 (526)
T PRK13581 451 EGHMLIIRNRDR-PGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLS 499 (526)
T ss_pred CceEEEEEeCCc-CChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEE
Confidence 334444456788 99999999999999999999888763 345554443
No 182
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.54 E-value=85 Score=20.72 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcc
Q 031514 31 SIVVDASKYIEELKQQVETLNQEIGT 56 (158)
Q Consensus 31 SIl~dAI~YIk~Lq~~v~~Le~e~~~ 56 (158)
+=|++|+.-+.+|+.+++.|..++..
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44899999999999999999988653
No 183
>PRK08210 aspartate kinase I; Reviewed
Probab=28.26 E-value=3.9e+02 Score=23.02 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=27.9
Q ss_pred EEEecCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEE
Q 031514 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLD 108 (158)
Q Consensus 71 V~~~~~~~~I~i~c~---~~~~gll~~il~aLe~l~L~V~~ 108 (158)
+...++-..|.|... .. +|.+.+++++|.+.++.+..
T Consensus 333 v~~~~~~a~isvvG~~~~~~-~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 333 PSVRENCAKVSIVGAGMAGV-PGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EEEeCCcEEEEEEcCCcCCC-ccHHHHHHHHHHhCCCCEEE
Confidence 444444466666653 46 89999999999999999985
No 184
>PRK06545 prephenate dehydrogenase; Validated
Probab=27.80 E-value=1.6e+02 Score=25.13 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=32.4
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
+.+.|.-+.+ ||.+..|+..|-+.|+++.+..+.-.-
T Consensus 291 ~~~~v~v~d~-pg~~~~~~~~~~~~~i~i~~~~i~~~~ 327 (359)
T PRK06545 291 YDLYVDVPDE-PGVIARVTAILGEEGISIENLRILEAR 327 (359)
T ss_pred eEEEEeCCCC-CCHHHHHHHHHHHcCCCeecceeeecc
Confidence 5677777999 999999999999999999999986653
No 185
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=27.66 E-value=1.1e+02 Score=25.62 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=25.8
Q ss_pred hHhHHHHHHHhhHHhhcC-CCCCCCcccchhhHHHHHHHHHHHHHHHHHHh
Q 031514 4 REQNKAALYEKLMLLRDV-TNSTSMNKTSIVVDASKYIEELKQQVETLNQE 53 (158)
Q Consensus 4 ER~RR~kln~~~~~LRsl-~~~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e 53 (158)
-|.||.++.+.+..|..- |...| |..|++++..+|.+
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s~k-------------l~~LeqELvraEae 180 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQSPK-------------LVVLEQELVRAEAE 180 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTT-------------HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCChH-------------HHHHHHHHHHHHHH
Confidence 388999999999999987 44433 34566666555543
No 186
>PRK09034 aspartate kinase; Reviewed
Probab=27.55 E-value=4.4e+02 Score=23.37 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=31.0
Q ss_pred EEEecCeEEEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEEEee
Q 031514 71 VETLEKGFLINVYL---EKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (158)
Q Consensus 71 V~~~~~~~~I~i~c---~~~~~gll~~il~aLe~l~L~V~~a~vs~ 113 (158)
|....+-..|.|.. ... +|.+.+++++|.+.+++|.-..-++
T Consensus 379 I~~~~~va~VsivG~g~~~~-~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQT-VGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred EEEeCCEEEEEEECCCCCCC-ccHHHHHHHHHHHCCCCEEEEEecC
Confidence 44445556677743 245 8999999999999999998776444
No 187
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=27.53 E-value=1.4e+02 Score=26.75 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=34.7
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEE
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEA 121 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~ 121 (158)
.|+|.|+.| -|+.-.+++.|-..++++-...|-..+...+++
T Consensus 2 RleV~cedR-lGltrelLdlLv~r~idl~~iEid~~~~IYln~ 43 (511)
T COG3283 2 RLEVFCEDR-LGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNF 43 (511)
T ss_pred ceEEEehhh-hchHHHHHHHHHhcccCccceeecCCCeEEEec
Confidence 589999999 999999999999999998888875555555553
No 188
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.98 E-value=1.3e+02 Score=17.28 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=23.2
Q ss_pred ccCCCCHHHHHHHHHHhCCCeEEEEEEee
Q 031514 85 EKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (158)
Q Consensus 85 ~~~~~gll~~il~aLe~l~L~V~~a~vs~ 113 (158)
+.. +|.+.+++++|.+.++.+...+.+.
T Consensus 9 ~~~-~~~~~~i~~~L~~~~i~i~~i~~~~ 36 (61)
T cd04891 9 PDK-PGVAAKIFSALAEAGINVDMIVQSV 36 (61)
T ss_pred CCC-CcHHHHHHHHHHHcCCcEEEEEEcC
Confidence 455 8999999999999999997766543
No 189
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.65 E-value=79 Score=21.09 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 031514 33 VVDASKYIEELKQQVETLNQEI 54 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~ 54 (158)
+..||+-|.-||.++++|+.+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999998853
No 190
>PRK06635 aspartate kinase; Reviewed
Probab=26.55 E-value=3.4e+02 Score=23.25 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=30.3
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
+-+.|++.+-...+|.+.+++++|.+.|+.|...+.+...
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~ 300 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSE 300 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC
Confidence 3466777663332899999999999999999987665444
No 191
>PF14992 TMCO5: TMCO5 family
Probab=26.50 E-value=77 Score=26.77 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=22.6
Q ss_pred cccch---hhHHHHHHHHHHHHHHHHHHhhc
Q 031514 28 NKTSI---VVDASKYIEELKQQVETLNQEIG 55 (158)
Q Consensus 28 DKaSI---l~dAI~YIk~Lq~~v~~Le~e~~ 55 (158)
|-+++ -.|+..||++||+.++.++.+.+
T Consensus 138 d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE 168 (280)
T PF14992_consen 138 DYQQVHQLCEDQANEIKKLKEKLRRMEEEKE 168 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 67999999999999999988644
No 192
>PRK09084 aspartate kinase III; Validated
Probab=26.49 E-value=2.9e+02 Score=24.53 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=29.3
Q ss_pred CeEEEEEEecc---CCCCHHHHHHHHHHhCCCeEEEEEE
Q 031514 76 KGFLINVYLEK---NCSGLLVSVLEAFEDLGLEVLDARV 111 (158)
Q Consensus 76 ~~~~I~i~c~~---~~~gll~~il~aLe~l~L~V~~a~v 111 (158)
+-++|+|.+.. . +|.+.+++++|.+.++.|.-...
T Consensus 305 ~i~lItv~~~~~~~~-~g~~a~if~~l~~~~I~Vd~I~s 342 (448)
T PRK09084 305 NQTLLTLHSLNMLHA-RGFLAEVFGILARHKISVDLITT 342 (448)
T ss_pred CEEEEEEecCCCCcc-ccHHHHHHHHHHHcCCeEEEEec
Confidence 44788998753 5 79999999999999999988874
No 193
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=26.34 E-value=1.8e+02 Score=18.46 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=22.0
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 86 KNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 86 ~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
.. +|.+.+++++|.+.++.+.-.+.+
T Consensus 13 ~~-~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 13 GV-PGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred CC-ccHHHHHHHHHHHCCCcEEEEEec
Confidence 45 789999999999999999776654
No 194
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=25.83 E-value=79 Score=18.37 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 031514 38 KYIEELKQQVETL 50 (158)
Q Consensus 38 ~YIk~Lq~~v~~L 50 (158)
.||+.|..++.+|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 5899998888775
No 195
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=25.76 E-value=1.7e+02 Score=18.78 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=21.4
Q ss_pred HHHHhCCCeEEEEEEeeeCCeEEEEEeccc
Q 031514 97 EAFEDLGLEVLDARVSCSDRFQLEAVGGDF 126 (158)
Q Consensus 97 ~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~ 126 (158)
+.++.+|..+..=.|.|-|||.|.......
T Consensus 3 ~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~ 32 (63)
T PF04083_consen 3 ELIEKHGYPCEEHEVTTEDGYILTLHRIPP 32 (63)
T ss_dssp HHHHHTT---EEEEEE-TTSEEEEEEEE-S
T ss_pred HHHHHcCCCcEEEEEEeCCCcEEEEEEccC
Confidence 567889999999999999999999887654
No 196
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=25.70 E-value=38 Score=20.88 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhccCc
Q 031514 40 IEELKQQVETLNQEIGTSE 58 (158)
Q Consensus 40 Ik~Lq~~v~~Le~e~~~~~ 58 (158)
|..|+++|+.|+.++..+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq 19 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQ 19 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 3456777777776655443
No 197
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=25.30 E-value=1.3e+02 Score=27.19 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=32.4
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
..|-++.+.+ +|.|.++|..|+..|+.+.+..+-+..
T Consensus 32 tSLIFsL~d~-pGaL~~vL~vFa~~gINLThIESRPsk 68 (464)
T TIGR01270 32 LSIIFSLSNV-VGDLSKAIAIFQDRHINILHLESRDSK 68 (464)
T ss_pred EEEEEECCCC-chHHHHHHHHHHHCCCCEEEEECCcCC
Confidence 5566666888 999999999999999999999998874
No 198
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=25.27 E-value=2.1e+02 Score=18.86 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=31.8
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeccc
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDF 126 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~~~~~~ 126 (158)
++|+|.| . +.-..+|++..+.++-.|++++ -+.+++++.....
T Consensus 5 ~LiKV~~--~-~~~r~ei~~l~~~f~a~ivd~~---~~~~iie~tG~~~ 47 (75)
T PF10369_consen 5 ALIKVKA--T-PENRSEILQLAEIFRARIVDVS---PDSIIIELTGTPE 47 (75)
T ss_dssp EEEEEE---S-CHHHHHHHHHHHHTT-EEEEEE---TTEEEEEEEE-HH
T ss_pred EEEEEEC--C-ccCHHHHHHHHHHhCCEEEEEC---CCEEEEEEcCCHH
Confidence 6899999 4 5688999999999999999887 5557777766443
No 199
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=22.73 E-value=1.9e+02 Score=23.45 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=26.2
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
+.+.|+.. -|..+-.+|++.|+++.++.+.-...
T Consensus 167 ~~~~c~p~---~~~~v~~~L~~~g~~i~~~e~~~~P~ 200 (234)
T PF01709_consen 167 FEFICDPS---DLSAVKKALEKKGYEIESAELEYIPN 200 (234)
T ss_dssp EEEEEEGG---GHHHHHHHHHHTT---SEEEEEEEES
T ss_pred EEEEECHH---HHHHHHHHHHHcCCCeeEEEEEEeCC
Confidence 88999877 89999999999999999888765543
No 200
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=22.73 E-value=2.4e+02 Score=18.72 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=23.7
Q ss_pred EEEEEeccCCCCHH----HHHHHHHHhCCCe-EEEEEEee
Q 031514 79 LINVYLEKNCSGLL----VSVLEAFEDLGLE-VLDARVSC 113 (158)
Q Consensus 79 ~I~i~c~~~~~gll----~~il~aLe~l~L~-V~~a~vs~ 113 (158)
.++|.-..+ ||++ ..+..+|.++|+. |.+++++.
T Consensus 2 ~~~V~V~~k-~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k 40 (80)
T PRK05974 2 KVKVTVTLK-EGVLDPQGQAIKGALGSLGYDGVEDVRQGK 40 (80)
T ss_pred EEEEEEEEC-CCCcChHHHHHHHHHHHcCCCCcceEEEEE
Confidence 355555667 7765 5688899999997 77766443
No 201
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=22.50 E-value=1.8e+02 Score=17.12 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.0
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 86 KNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 86 ~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
.. +|.+.+++.+|.+.++.+.-.+.+
T Consensus 12 ~~-~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04936 12 SH-PGVAAKMFEALAEAGINIEMISTS 37 (63)
T ss_pred CC-ccHHHHHHHHHHHCCCcEEEEEcc
Confidence 44 789999999999999999877643
No 202
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=22.27 E-value=4.7e+02 Score=22.39 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=29.6
Q ss_pred cCeEEEEEE---eccCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 75 EKGFLINVY---LEKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 75 ~~~~~I~i~---c~~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
.+-..|+|. -... +|.+.+++.+|.+.++.+.....+
T Consensus 258 ~~va~vsv~g~~~~~~-~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGK-RGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred CCEEEEEEecCCCCCC-ccHHHHHHHHHHHcCCcEEEEEcC
Confidence 444678887 3556 899999999999999999876653
No 203
>PLN02551 aspartokinase
Probab=22.15 E-value=2.9e+02 Score=25.21 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=28.8
Q ss_pred eEEEEEEecc---CCCCHHHHHHHHHHhCCCeEEEEEE
Q 031514 77 GFLINVYLEK---NCSGLLVSVLEAFEDLGLEVLDARV 111 (158)
Q Consensus 77 ~~~I~i~c~~---~~~gll~~il~aLe~l~L~V~~a~v 111 (158)
-.+|+|.+.. . +|.+.+|++.|.++|+.|.-...
T Consensus 366 v~li~i~~~~m~~~-~g~~arvf~~l~~~~I~Vd~Iss 402 (521)
T PLN02551 366 VTMLDIVSTRMLGQ-YGFLAKVFSTFEDLGISVDVVAT 402 (521)
T ss_pred eEEEEEecCCCCCc-ccHHHHHHHHHHHcCCcEEEEec
Confidence 3688998864 5 89999999999999999988853
No 204
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.82 E-value=1.1e+02 Score=19.31 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 031514 39 YIEELKQQVETLNQEIGT 56 (158)
Q Consensus 39 YIk~Lq~~v~~Le~e~~~ 56 (158)
.++.+++++++++++.+.
T Consensus 49 ~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356777777777776643
No 205
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=21.45 E-value=99 Score=23.39 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcc
Q 031514 32 IVVDASKYIEELKQQVETLNQEIGT 56 (158)
Q Consensus 32 Il~dAI~YIk~Lq~~v~~Le~e~~~ 56 (158)
+||.||. |+|+.++++++++...
T Consensus 67 vLG~AIQ--kHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 67 VLGMAIQ--KHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHH--HHHHHHHHHhhhcccc
Confidence 5999997 8999999999887654
No 206
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.36 E-value=64 Score=27.95 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=21.5
Q ss_pred HHhhHHhhcCCCCCCCcccch----hhHHHHH
Q 031514 12 YEKLMLLRDVTNSTSMNKTSI----VVDASKY 39 (158)
Q Consensus 12 n~~~~~LRsl~~~~K~DKaSI----l~dAI~Y 39 (158)
|-+-..||.||+.+|.|-.-+ +.+|+.|
T Consensus 107 nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 107 NYRRKVLRVLPNLKKLDNVPVTEEELEEALRD 138 (388)
T ss_pred hHHHHHHHHcccchhccCccccHHHHHHHHhc
Confidence 456678999999999998777 5566654
No 207
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=20.57 E-value=2e+02 Score=22.44 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCeEEEEEEeeeCC---eEEEEEeccc
Q 031514 92 LVSVLEAFEDLGLEVLDARVSCSDR---FQLEAVGGDF 126 (158)
Q Consensus 92 l~~il~aLe~l~L~V~~a~vs~~~~---~~l~~~~~~~ 126 (158)
+..=+.-|.+||++|-...+++.++ ..+..+++.-
T Consensus 21 i~~ri~rLN~LGFdV~El~~~~~~~g~~~~i~p~Vvd~ 58 (165)
T PF13224_consen 21 IEERIRRLNELGFDVGELEITTDDDGTRLRIQPKVVDA 58 (165)
T ss_pred HHHHHHHHHhcCCceeeeEeEEcCCCCEEEEEeeEeCC
Confidence 4555788999999999999999754 6666666543
No 208
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.36 E-value=1.5e+02 Score=20.01 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc
Q 031514 33 VVDASKYIEELKQQVETLNQEIG 55 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~ 55 (158)
+.-||+-|.=||-.+++|+.+.+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56789999999999999987654
No 209
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=20.33 E-value=5.8e+02 Score=23.03 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=26.3
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEE
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARV 111 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~v 111 (158)
..+.+.|.=|.+ ||.|.++++.|-.. +|...+-
T Consensus 324 re~~l~V~iPer-PGal~~f~~~i~~~--nItef~y 356 (499)
T TIGR01124 324 REALLAVTIPEQ-PGSFLKFCELLGNR--NITEFNY 356 (499)
T ss_pred CEEEEEEEeCCC-CCHHHHHHHHhhhc--ceEEEEE
Confidence 458999999999 99999999999873 4444333
No 210
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=20.20 E-value=2.2e+02 Score=19.62 Aligned_cols=43 Identities=30% Similarity=0.529 Sum_probs=31.2
Q ss_pred EEEEEEeccCCCCHH----HHHHHHHHhCCCe-EEEEEEeeeCCeEEEE
Q 031514 78 FLINVYLEKNCSGLL----VSVLEAFEDLGLE-VLDARVSCSDRFQLEA 121 (158)
Q Consensus 78 ~~I~i~c~~~~~gll----~~il~aLe~l~L~-V~~a~vs~~~~~~l~~ 121 (158)
+.++|.-..+ +|+| .-|-.+|..+|.. |.++++.-+-.|.+++
T Consensus 2 ~~v~V~V~lK-~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK~~el~ld~ 49 (83)
T COG1828 2 YKVRVYVTLK-PGVLDPEGETIEKALHRLGYNEVSDVRVGKVIELELDA 49 (83)
T ss_pred eEEEEEEEeC-CcccCchhHHHHHHHHHcCCcccceeeeeeEEEEEecC
Confidence 3456666677 7766 5688999999977 9998877665555553
No 211
>PRK06291 aspartate kinase; Provisional
Probab=20.02 E-value=6.2e+02 Score=22.43 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=28.4
Q ss_pred eEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 77 GFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 77 ~~~I~i~c~---~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
-..|+|... .. +|.+.+++++|.+.|+.|.-..-+
T Consensus 321 valIsI~g~~m~~~-~g~~arvf~~L~~~gI~V~mIsq~ 358 (465)
T PRK06291 321 VALINISGAGMVGV-PGTAARIFSALAEEGVNVIMISQG 358 (465)
T ss_pred EEEEEEeCCCCCCC-ccHHHHHHHHHHHCCCcEEEEEec
Confidence 367888765 34 899999999999999999876543
Done!