Query 031514
Match_columns 158
No_of_seqs 108 out of 760
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 00:35:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 4.6E-16 1.6E-20 106.7 5.0 56 2-57 12-69 (82)
2 4h10_B Circadian locomoter out 99.5 2E-14 6.8E-19 96.0 5.0 50 2-51 14-65 (71)
3 1nkp_B MAX protein, MYC proto- 99.5 2.5E-14 8.5E-19 98.0 5.4 55 2-56 8-65 (83)
4 1hlo_A Protein (transcription 99.5 2.9E-14 9.9E-19 97.1 4.9 56 2-57 18-76 (80)
5 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.3E-13 4.6E-18 95.6 5.4 53 2-54 12-68 (88)
6 1an4_A Protein (upstream stimu 99.4 6.8E-14 2.3E-18 91.6 3.1 46 2-47 11-63 (65)
7 4ati_A MITF, microphthalmia-as 99.4 2E-13 7E-18 99.4 5.5 52 2-53 33-89 (118)
8 1a0a_A BHLH, protein (phosphat 99.4 2E-13 6.7E-18 89.2 3.7 46 2-47 8-61 (63)
9 4h10_A ARYL hydrocarbon recept 99.4 1E-13 3.4E-18 93.1 1.6 44 2-45 15-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.3 2.5E-12 8.4E-17 87.7 5.7 54 2-55 7-64 (80)
11 3u5v_A Protein MAX, transcript 99.2 2.8E-12 9.5E-17 86.7 1.9 51 2-52 11-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.0 2.1E-10 7.3E-15 75.8 3.1 47 2-48 18-67 (68)
13 2ql2_B Neurod1, neurogenic dif 98.9 6.9E-10 2.4E-14 71.6 4.2 46 3-48 9-58 (60)
14 4f3l_A Mclock, circadian locom 98.8 1.8E-09 6.2E-14 90.5 4.7 45 2-46 18-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 1.6E-08 5.5E-13 85.6 3.7 45 2-46 19-68 (387)
16 2lfh_A DNA-binding protein inh 98.6 8.7E-09 3E-13 67.8 1.3 42 4-45 22-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 1.9E-06 6.6E-11 58.7 4.6 46 8-53 4-54 (83)
18 4aya_A DNA-binding protein inh 97.8 1.8E-05 6.2E-10 55.4 4.5 47 4-50 33-83 (97)
19 1zpv_A ACT domain protein; str 97.3 0.0061 2.1E-07 40.4 11.1 67 77-152 5-72 (91)
20 1u8s_A Glycine cleavage system 96.5 0.015 5.2E-07 43.9 9.0 65 77-151 6-71 (192)
21 2nyi_A Unknown protein; protei 96.5 0.011 3.8E-07 45.2 8.1 46 77-123 5-51 (195)
22 2nyi_A Unknown protein; protei 96.2 0.026 9E-07 43.0 8.7 66 77-152 93-165 (195)
23 2ko1_A CTR148A, GTP pyrophosph 96.0 0.029 9.9E-07 36.4 6.9 39 77-116 5-43 (88)
24 1u8s_A Glycine cleavage system 95.9 0.097 3.3E-06 39.4 10.4 68 77-153 93-169 (192)
25 3o1l_A Formyltetrahydrofolate 94.8 0.32 1.1E-05 39.9 10.9 67 77-151 22-91 (302)
26 3p96_A Phosphoserine phosphata 94.7 0.099 3.4E-06 43.6 7.9 66 77-150 12-78 (415)
27 3n0v_A Formyltetrahydrofolate 94.3 0.4 1.4E-05 39.0 10.3 67 76-151 7-76 (286)
28 3obi_A Formyltetrahydrofolate 93.9 0.73 2.5E-05 37.4 11.1 68 76-151 5-75 (288)
29 3lou_A Formyltetrahydrofolate 93.5 0.53 1.8E-05 38.4 9.7 70 76-151 9-81 (292)
30 2jhe_A Transcription regulator 92.6 0.26 8.7E-06 35.5 5.9 37 79-117 2-38 (190)
31 2f1f_A Acetolactate synthase i 91.8 1.1 3.8E-05 33.5 8.7 45 78-123 4-50 (164)
32 3nrb_A Formyltetrahydrofolate 91.4 1.4 4.8E-05 35.7 9.5 65 76-150 6-73 (287)
33 2pc6_A Probable acetolactate s 90.6 1.5 5.1E-05 32.9 8.3 46 78-124 5-52 (165)
34 2fgc_A Acetolactate synthase, 86.5 2 7E-05 33.1 6.7 38 78-116 30-67 (193)
35 1y7p_A Hypothetical protein AF 84.2 3.8 0.00013 32.3 7.4 38 77-115 4-41 (223)
36 2f06_A Conserved hypothetical 69.1 23 0.00078 24.6 7.4 38 78-116 7-44 (144)
37 2qmx_A Prephenate dehydratase; 67.9 22 0.00075 28.6 7.9 38 78-116 201-238 (283)
38 2f06_A Conserved hypothetical 67.1 29 0.00098 24.1 8.2 32 80-112 75-106 (144)
39 2wt7_A Proto-oncogene protein 64.7 12 0.0004 23.3 4.5 39 4-54 1-39 (63)
40 2er8_A Regulatory protein Leu3 63.8 5.3 0.00018 24.8 2.8 22 37-58 48-69 (72)
41 3mwb_A Prephenate dehydratase; 63.1 44 0.0015 27.3 8.8 38 78-116 202-240 (313)
42 2qmw_A PDT, prephenate dehydra 62.7 23 0.00079 28.2 7.0 40 76-116 185-227 (267)
43 2dtj_A Aspartokinase; protein- 56.3 47 0.0016 24.2 7.3 42 72-114 10-52 (178)
44 2re1_A Aspartokinase, alpha an 54.1 34 0.0012 24.6 6.2 41 71-112 19-60 (167)
45 1hwt_C Protein (heme activator 53.3 7.7 0.00026 24.5 2.2 22 37-58 57-78 (81)
46 3luy_A Probable chorismate mut 52.8 94 0.0032 25.4 10.1 56 86-149 217-273 (329)
47 1dh3_A Transcription factor CR 52.3 8.3 0.00028 23.5 2.1 18 38-55 22-39 (55)
48 1zme_C Proline utilization tra 51.8 8.2 0.00028 23.7 2.1 21 37-57 43-63 (70)
49 2xze_Q Charged multivesicular 51.6 7 0.00024 22.6 1.5 12 9-20 29-40 (40)
50 2lqj_A Mg2+ transport protein; 50.7 51 0.0018 21.9 6.1 62 77-147 8-72 (94)
51 2oqq_A Transcription factor HY 50.2 8 0.00027 22.5 1.6 18 38-55 3-20 (42)
52 1gd2_E Transcription factor PA 49.7 12 0.00042 24.0 2.6 18 37-54 28-45 (70)
53 2re1_A Aspartokinase, alpha an 48.9 71 0.0024 22.9 9.0 39 71-110 97-138 (167)
54 1ybx_A Conserved hypothetical 44.3 41 0.0014 24.5 5.1 25 33-57 43-67 (143)
55 1xkm_B Distinctin chain B; por 42.8 25 0.00087 17.8 2.6 19 31-49 4-22 (26)
56 2rrl_A FLIK, flagellar HOOK-le 41.5 54 0.0018 24.5 5.5 79 36-114 67-153 (169)
57 1j8b_A YBAB; hypothetical prot 39.6 47 0.0016 22.9 4.6 23 35-57 12-34 (112)
58 2dtj_A Aspartokinase; protein- 38.3 1.1E+02 0.0038 22.1 7.4 39 71-110 89-130 (178)
59 2l5g_A GPS2 protein, G protein 37.4 41 0.0014 19.0 3.2 29 27-55 4-32 (38)
60 1phz_A Protein (phenylalanine 37.2 59 0.002 27.9 5.7 39 77-116 34-72 (429)
61 3he4_B Synzip5; heterodimeric 36.6 42 0.0014 19.2 3.2 20 33-52 5-24 (46)
62 2akf_A Coronin-1A; coiled coil 36.4 27 0.00092 18.7 2.2 16 39-54 14-29 (32)
63 2dt9_A Aspartokinase; protein- 35.6 1.2E+02 0.004 21.6 8.2 41 71-112 10-51 (167)
64 3k5p_A D-3-phosphoglycerate de 35.6 1.8E+02 0.006 24.5 8.5 52 65-117 331-382 (416)
65 1pyi_A Protein (pyrimidine pat 35.5 25 0.00087 22.7 2.6 21 37-57 47-67 (96)
66 1ygy_A PGDH, D-3-phosphoglycer 35.4 2E+02 0.007 24.6 9.1 37 77-114 454-490 (529)
67 2dt9_A Aspartokinase; protein- 34.8 1.2E+02 0.0042 21.5 8.6 40 70-110 88-130 (167)
68 2cqn_A Formin-binding protein 34.1 74 0.0025 20.4 4.6 23 6-28 7-30 (77)
69 4go7_X Aspartokinase; transfer 33.4 70 0.0024 24.2 5.2 39 71-110 29-68 (200)
70 1pd7_B MAD1; PAH2, SIN3, eukar 33.1 53 0.0018 17.0 3.0 21 26-46 1-21 (26)
71 3s1t_A Aspartokinase; ACT doma 31.8 1.5E+02 0.0051 21.6 8.0 39 71-110 90-131 (181)
72 3mtj_A Homoserine dehydrogenas 30.4 52 0.0018 28.0 4.3 34 76-110 358-391 (444)
73 2dgc_A Protein (GCN4); basic d 29.5 31 0.001 21.4 2.1 19 37-55 29-47 (63)
74 3f42_A Protein HP0035; helicob 28.7 81 0.0028 21.3 4.3 37 41-87 13-49 (99)
75 3coq_A Regulatory protein GAL4 28.7 34 0.0011 21.7 2.3 21 37-57 44-64 (89)
76 2jqq_A Conserved oligomeric go 28.1 20 0.00067 27.7 1.1 46 7-52 52-97 (204)
77 2dnr_A Synaptojanin-1; RRM dom 27.9 86 0.0029 20.9 4.2 38 76-115 8-51 (91)
78 1d66_A Protein (GAL4); protein 27.4 16 0.00055 21.9 0.4 16 36-51 50-65 (66)
79 2rp4_A Transcription factor P5 27.4 39 0.0013 21.9 2.3 33 68-101 11-44 (76)
80 1jnm_A Proto-oncogene C-JUN; B 27.3 35 0.0012 20.8 2.1 18 37-54 21-38 (62)
81 1g1e_B SIN3A; four-helix bundl 25.7 40 0.0014 22.3 2.3 15 33-47 10-24 (89)
82 2cdq_A Aspartokinase; aspartat 24.6 2E+02 0.0067 24.8 7.0 44 76-121 340-386 (510)
83 1e91_A Paired amphipathic heli 23.9 46 0.0016 21.8 2.3 17 32-48 6-22 (85)
84 1t2k_D Cyclic-AMP-dependent tr 22.3 50 0.0017 20.0 2.1 19 37-55 21-39 (61)
85 2jee_A YIIU; FTSZ, septum, coi 21.8 91 0.0031 20.5 3.3 22 33-54 15-36 (81)
86 4dac_A Computationally designe 21.3 91 0.0031 16.0 2.5 17 39-55 9-25 (28)
87 3i00_A HIP-I, huntingtin-inter 21.1 82 0.0028 22.1 3.2 26 31-56 33-58 (120)
88 2czy_A Paired amphipathic heli 20.0 63 0.0021 20.6 2.3 16 33-48 4-19 (77)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.61 E-value=4.6e-16 Score=106.72 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=51.0
Q ss_pred chhHhHHHHHHHhhHHhhcC-CC-CCCCcccchhhHHHHHHHHHHHHHHHHHHhhccC
Q 031514 2 SSREQNKAALYEKLMLLRDV-TN-STSMNKTSIVVDASKYIEELKQQVETLNQEIGTS 57 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl-~~-~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (158)
++||+||.+||+.|..||++ |+ ..|+||++||.+||+||++|+.+++.|+.+...+
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L 69 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999 54 4899999999999999999999999999876543
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=96.02 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=45.4
Q ss_pred chhHhHHHHHHHhhHHhhcCCC--CCCCcccchhhHHHHHHHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDVTN--STSMNKTSIVVDASKYIEELKQQVETLN 51 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~--~~K~DKaSIl~dAI~YIk~Lq~~v~~Le 51 (158)
+.||+||.+||+.|..|++|+| ..|+||++||..||+||+.||.++.=|+
T Consensus 14 ~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 14 KSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4799999999999999999954 5799999999999999999999987654
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.49 E-value=2.5e-14 Score=97.98 Aligned_cols=55 Identities=18% Similarity=0.351 Sum_probs=49.6
Q ss_pred chhHhHHHHHHHhhHHhhcCCC---CCCCcccchhhHHHHHHHHHHHHHHHHHHhhcc
Q 031514 2 SSREQNKAALYEKLMLLRDVTN---STSMNKTSIVVDASKYIEELKQQVETLNQEIGT 56 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~---~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~~ 56 (158)
+.||+||..||+.|..||+++| ..|++|++||..||+||+.|+.+++.|+.+...
T Consensus 8 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~ 65 (83)
T 1nkp_B 8 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999944 589999999999999999999999998876543
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=2.9e-14 Score=97.11 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=50.8
Q ss_pred chhHhHHHHHHHhhHHhhcCCC---CCCCcccchhhHHHHHHHHHHHHHHHHHHhhccC
Q 031514 2 SSREQNKAALYEKLMLLRDVTN---STSMNKTSIVVDASKYIEELKQQVETLNQEIGTS 57 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~---~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (158)
+.||+||..||+.|..||+++| ..|++|++||..||+||+.|+.++++|+.+...+
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999954 4799999999999999999999999999876543
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=1.3e-13 Score=95.60 Aligned_cols=53 Identities=23% Similarity=0.279 Sum_probs=47.6
Q ss_pred chhHhHHHHHHHhhHHhhcCCC----CCCCcccchhhHHHHHHHHHHHHHHHHHHhh
Q 031514 2 SSREQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQVETLNQEI 54 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~----~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e~ 54 (158)
++||+||..||+.|..||+++| ..|++|++||..||+||+.|+.+...+..+.
T Consensus 12 ~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 12 VLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999954 3699999999999999999999988877643
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=6.8e-14 Score=91.65 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=40.9
Q ss_pred chhHhHHHHHHHhhHHhhcCCC-CC------CCcccchhhHHHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDVTN-ST------SMNKTSIVVDASKYIEELKQQV 47 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~-~~------K~DKaSIl~dAI~YIk~Lq~~v 47 (158)
++||+||.+||+.|..|++++| .. |+||++||..||+||+.||++.
T Consensus 11 ~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 11 EVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999944 32 7899999999999999999764
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.41 E-value=2e-13 Score=99.41 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=47.4
Q ss_pred chhHhHHHHHHHhhHHhhcCCC-C----CCCcccchhhHHHHHHHHHHHHHHHHHHh
Q 031514 2 SSREQNKAALYEKLMLLRDVTN-S----TSMNKTSIVVDASKYIEELKQQVETLNQE 53 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~-~----~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e 53 (158)
++||+||.+||++|..|++++| . .|+||++||..||+||+.||.+++.|+.+
T Consensus 33 ~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 33 LIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999954 3 47899999999999999999999999875
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.38 E-value=2e-13 Score=89.25 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=41.2
Q ss_pred chhHhHHHHHHHhhHHhhcCCC--------CCCCcccchhhHHHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDVTN--------STSMNKTSIVVDASKYIEELKQQV 47 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~--------~~K~DKaSIl~dAI~YIk~Lq~~v 47 (158)
++||+||.+||..|..|++|+| .+|..||++|..||+||+.||+++
T Consensus 8 ~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 8 HAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp GGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999954 256779999999999999999865
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.37 E-value=1e-13 Score=93.14 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=40.0
Q ss_pred chhHhHHHHHHHhhHHhhcCCC-----CCCCcccchhhHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDVTN-----STSMNKTSIVVDASKYIEELKQ 45 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~-----~~K~DKaSIl~dAI~YIk~Lq~ 45 (158)
.+||+||++||+.|..|++|+| .+|+|||+||..||+||+.|+.
T Consensus 15 ~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 15 QIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999954 3799999999999999999873
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.31 E-value=2.5e-12 Score=87.74 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=48.5
Q ss_pred chhHhHHHHHHHhhHHhhcCCC----CCCCcccchhhHHHHHHHHHHHHHHHHHHhhc
Q 031514 2 SSREQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQVETLNQEIG 55 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~----~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~ 55 (158)
..||+||..||+.|..||+++| .+|+.|++||..|++||+.|+.+...|..+..
T Consensus 7 ~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~ 64 (80)
T 1nlw_A 7 EMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQID 64 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999954 46889999999999999999999999987654
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.21 E-value=2.8e-12 Score=86.71 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=43.6
Q ss_pred chhHhHHHHHHHhhHHhhcCCC----CCCC-cccchhhHHHHHHHHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDVTN----STSM-NKTSIVVDASKYIEELKQQVETLNQ 52 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~----~~K~-DKaSIl~dAI~YIk~Lq~~v~~Le~ 52 (158)
+.||+||..||+.|..||.++| ..|. .|.+||..||+||+.||+++++++.
T Consensus 11 ~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 11 ALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999944 3343 4667999999999999999998864
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.98 E-value=2.1e-10 Score=75.84 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=41.7
Q ss_pred chhHhHHHHHHHhhHHhhcCCC---CCCCcccchhhHHHHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDVTN---STSMNKTSIVVDASKYIEELKQQVE 48 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~---~~K~DKaSIl~dAI~YIk~Lq~~v~ 48 (158)
+.||+|+..||+.|..||.++| ..|+.|+.+|..||+||..|++.++
T Consensus 18 ~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 18 MRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3599999999999999999944 5789999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.94 E-value=6.9e-10 Score=71.64 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=41.4
Q ss_pred hhHhHHHHHHHhhHHhhcCCC----CCCCcccchhhHHHHHHHHHHHHHH
Q 031514 3 SREQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQVE 48 (158)
Q Consensus 3 sER~RR~kln~~~~~LRsl~~----~~K~DKaSIl~dAI~YIk~Lq~~v~ 48 (158)
.||+|+..||+.|..||.++| ..|+.|..+|..||+||..|++.++
T Consensus 9 rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 9 RERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 599999999999999999943 4689999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.84 E-value=1.8e-09 Score=90.45 Aligned_cols=45 Identities=11% Similarity=0.268 Sum_probs=40.8
Q ss_pred chhHhHHHHHHHhhHHhhcCCC--CCCCcccchhhHHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDVTN--STSMNKTSIVVDASKYIEELKQQ 46 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~--~~K~DKaSIl~dAI~YIk~Lq~~ 46 (158)
++||+||++||..|..|++|+| .+|+||+|||..||.||+.|+..
T Consensus 18 ~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 18 KSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999944 78999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.62 E-value=1.6e-08 Score=85.62 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=40.8
Q ss_pred chhHhHHHHHHHhhHHhhcCCC-----CCCCcccchhhHHHHHHHHHHHH
Q 031514 2 SSREQNKAALYEKLMLLRDVTN-----STSMNKTSIVVDASKYIEELKQQ 46 (158)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~~-----~~K~DKaSIl~dAI~YIk~Lq~~ 46 (158)
.+||+||++||..|..|++|+| ..|+||+|||..||.|||.|+..
T Consensus 19 ~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 19 QIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred chhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3699999999999999999944 68999999999999999999843
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.61 E-value=8.7e-09 Score=67.82 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=37.7
Q ss_pred hHhHHHHHHHhhHHhhcCCC----CCCCcccchhhHHHHHHHHHHH
Q 031514 4 REQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQ 45 (158)
Q Consensus 4 ER~RR~kln~~~~~LRsl~~----~~K~DKaSIl~dAI~YIk~Lq~ 45 (158)
||+|+..||+-|..||.++| .+|+.|.-+|.-||+||..||.
T Consensus 22 ER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 78888999999999999943 4689999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.17 E-value=1.9e-06 Score=58.68 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=39.5
Q ss_pred HHHHHHhhHHhhcCCC-C----CCCcccchhhHHHHHHHHHHHHHHHHHHh
Q 031514 8 KAALYEKLMLLRDVTN-S----TSMNKTSIVVDASKYIEELKQQVETLNQE 53 (158)
Q Consensus 8 R~kln~~~~~LRsl~~-~----~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e 53 (158)
|..||+++..|..|+| + .|..|.+||.-|++||+.||+..+.+..+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999944 2 47899999999999999999887776653
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.83 E-value=1.8e-05 Score=55.38 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=40.2
Q ss_pred hHhHHHHHHHhhHHhhcCCC----CCCCcccchhhHHHHHHHHHHHHHHHH
Q 031514 4 REQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQVETL 50 (158)
Q Consensus 4 ER~RR~kln~~~~~LRsl~~----~~K~DKaSIl~dAI~YIk~Lq~~v~~L 50 (158)
||.|=..+|+-|..||.++| .+|.-|.-+|--||+||..|+.-+++-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 46666889999999999943 568899999999999999999887653
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.28 E-value=0.0061 Score=40.38 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=53.1
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHh
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIKN 152 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~~ 152 (158)
.+.|+|.|+.+ ||++.+|...|-+.|.++.+.+....+| |.+...+ +.. ...+.+.+...|.+....
T Consensus 5 ~~~l~v~~~Dr-pGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v-~~~-------~~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 5 KAIITVVGKDK-SGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV-SSD-------EKQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEESCC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE-EES-------SCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCC-CCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEE-EeC-------CCCCHHHHHHHHHHHHHH
Confidence 37899999999 9999999999999999999999988777 4444433 332 245788898888765543
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.54 E-value=0.015 Score=43.94 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=50.7
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
.+.|.|.|+.+ ||++..|...|...|+++..+++.+..| |.+...+ ... . .+.+.++++|.....
T Consensus 6 ~~~itv~~~Dr-pGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v-~~~------~--~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDR-PGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLI-SGS------P--SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE-EEC------H--HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCC-CcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEE-ecC------C--CCHHHHHHHHHHHHH
Confidence 47899999999 9999999999999999999999988766 6664333 321 1 256677777776654
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.50 E-value=0.011 Score=45.19 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=40.3
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEe
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVG 123 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~ 123 (158)
.+.|.|.|+.+ ||++..|...|..+|++++.+++.+..| |.+...+
T Consensus 5 ~~~ltv~~~Dr-pGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v 51 (195)
T 2nyi_A 5 SFVVSVAGSDR-VGIVHDFSWALKNISANVESSRMACLGGDFAMIVLV 51 (195)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEeCCC-CcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEE
Confidence 47899999999 9999999999999999999999998765 7774433
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.21 E-value=0.026 Score=43.03 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=51.9
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC------C-eEEEEEeccccccccCCCCCCCHHHHHHHHHHH
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD------R-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQA 149 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~------~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~a 149 (158)
.+.|+|.|+.+ ||++..|-..|-++|+.+..++..+.+ + |.+..... .. ...+ +.++++|...
T Consensus 93 ~~iltv~g~Dr-pGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~-~~-------~~~~-~~l~~~l~~~ 162 (195)
T 2nyi_A 93 EYELYVEGPDS-EGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVA-FP-------FPLY-QEVVTALSRV 162 (195)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEE-EE-------GGGH-HHHHHHHHHH
T ss_pred EEEEEEEeCCC-cCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEE-cC-------CCcc-HHHHHHHHHH
Confidence 48899999999 999999999999999999999999875 2 66665542 21 1335 7788888766
Q ss_pred HHh
Q 031514 150 IKN 152 (158)
Q Consensus 150 i~~ 152 (158)
...
T Consensus 163 a~~ 165 (195)
T 2nyi_A 163 EEE 165 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.96 E-value=0.029 Score=36.44 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=35.8
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
.+.|+|.++.+ ||+|.+|...|.+.|+++.+.++.+.++
T Consensus 5 ~~~l~v~~~Dr-~G~L~~I~~~la~~~inI~~i~~~~~~~ 43 (88)
T 2ko1_A 5 LAGIRIVGEDK-NGMTNQITGVISKFDTNIRTIVLNAKDG 43 (88)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHTTSSSCEEEEEEEECSS
T ss_pred EEEEEEEEECC-CcHHHHHHHHHHHCCCCeEEEEEEEcCC
Confidence 36789999999 9999999999999999999999988766
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.85 E-value=0.097 Score=39.38 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=53.7
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC---------CeEEEEEeccccccccCCCCCCCHHHHHHHHH
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD---------RFQLEAVGGDFLQHIEGHADGIDAQVVKEAVL 147 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~ 147 (158)
.+.|.|.|+.+ ||++..|...|.+.|+++..+...+.+ -|.+..... . +...+.+.++.+|.
T Consensus 93 ~~~l~v~~~D~-~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~-~-------~~~~~~~~l~~~l~ 163 (192)
T 1u8s_A 93 TVEVYVESDDK-LGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISAR-V-------DSGCNLMQLQEEFD 163 (192)
T ss_dssp EEEEEEEESCC-TTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEE-E-------CTTSCHHHHHHHHH
T ss_pred eEEEEEEeCCC-ccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEe-C-------CCCCCHHHHHHHHH
Confidence 47899999999 999999999999999999999988764 266655432 2 23568889999998
Q ss_pred HHHHhh
Q 031514 148 QAIKNV 153 (158)
Q Consensus 148 ~ai~~~ 153 (158)
......
T Consensus 164 ~~~~~~ 169 (192)
T 1u8s_A 164 ALCTAL 169 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766553
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=94.80 E-value=0.32 Score=39.92 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=52.5
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee--CC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~--~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
.+.+++.|+.+ +|+...|-..|-+.|..+..++-... .| |.+.+... .+ +...+.+.+++++...-.
T Consensus 22 ~~iLtv~c~Dr-pGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~-~~------~~~~~~~~L~~~l~~la~ 91 (302)
T 3o1l_A 22 TFRLVIACPDR-VGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR-AD------TLPFDLDGFREAFTPIAE 91 (302)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE-GG------GSSSCHHHHHHHHHHHHH
T ss_pred eEEEEEECCCC-CCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe-cC------CCCCCHHHHHHHHHHHHH
Confidence 47899999999 99999999999999999999998864 34 76665442 21 235788999988865443
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=94.75 E-value=0.099 Score=43.65 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=51.2
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHH
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAI 150 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai 150 (158)
.+.|+|.|+.+ ||+...|...|-++|.+++.++-...+| |++...+.-. +...+.+.++.+|....
T Consensus 12 ~~~lt~~g~Dr-~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~-------~~~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 12 SVLITVTGVDQ-PGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP-------ADVADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHTSHHHHHHHHHHH
T ss_pred eEEEEEEcCCC-CCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec-------CCcCCHHHHHHHHHHHH
Confidence 47899999999 9999999999999999999999988887 6666544221 11234567887776543
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=94.28 E-value=0.4 Score=38.97 Aligned_cols=67 Identities=9% Similarity=0.008 Sum_probs=51.9
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee--eCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC--SDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~--~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
..+.|+|.|+.+ +|++..|-..|-++|.++.+++-.+ ..| |.+.+... .+ ...+.+.+++++...-.
T Consensus 7 ~~~vLtv~c~Dr-pGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~-~~-------~~~~~~~L~~~f~~la~ 76 (286)
T 3n0v_A 7 DTWILTADCPSM-LGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFR-QP-------DDFDEAGFRAGLAERSE 76 (286)
T ss_dssp CCEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE-CC-------SSCCHHHHHHHHHHHHG
T ss_pred CcEEEEEEeCCC-CCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEe-cC-------CCCCHHHHHHHHHHHHH
Confidence 347899999999 9999999999999999999998874 234 66665442 21 25788999988865433
No 28
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=93.87 E-value=0.73 Score=37.43 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=52.3
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee--eCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC--SDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~--~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
..+.|++.|+.+ +|++..|-..|-++|.++..++..+ ..| |.+.+.. ..+ +...+.+.+++++...-.
T Consensus 5 ~~~iLtv~g~Dr-pGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~------~~~~~~~~L~~~f~~la~ 75 (288)
T 3obi_A 5 HQYVLTLSCPDR-AGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVF-NAA------AKVIPLASLRTGFGVIAA 75 (288)
T ss_dssp CEEEEEEEEECC-TTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE-EES------SCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCC-CCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEE-EcC------CCCCCHHHHHHHHHHHHH
Confidence 357899999999 9999999999999999999998753 234 6666544 222 235788999998875543
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=93.54 E-value=0.53 Score=38.38 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=50.9
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee--eCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHHH
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC--SDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAIK 151 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~--~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai~ 151 (158)
..+.+++.|+.+ +|++..|-..|-++|.++.+++-.+ ..| |.+.+...... .+...+.+.+++++...-.
T Consensus 9 ~~~vLtv~c~Dr-~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-----~~~~~~~~~L~~~f~~la~ 81 (292)
T 3lou_A 9 HQFVLTLSCPSA-AGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATD-----DADALRVDALRREFEPIAE 81 (292)
T ss_dssp CEEEEEEEEESC-SCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC---------CCHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCC-CCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccC-----cccCCCHHHHHHHHHHHHH
Confidence 357899999999 9999999999999999999999874 234 66655432110 0124788889988865443
No 30
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=92.64 E-value=0.26 Score=35.55 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=34.1
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCe
Q 031514 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRF 117 (158)
Q Consensus 79 ~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~ 117 (158)
.|.|.|..| +|++.+|+.+|.+.++++..+++.+. |+
T Consensus 2 ~~~v~~~dr-~g~l~~i~~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDR-LGLTRELLDLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSC-TTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecC-CcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence 589999999 99999999999999999999999776 54
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=91.77 E-value=1.1 Score=33.50 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=37.1
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC--CeEEEEEe
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--RFQLEAVG 123 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~--~~~l~~~~ 123 (158)
..|.|..+.+ ||+|.+|...|...|+++.+.++.+.+ |.+.-.+.
T Consensus 4 ~~IsV~v~Nr-pGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~ 50 (164)
T 2f1f_A 4 RILSVLLENE-SGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQ 50 (164)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEE
T ss_pred EEEEEEEeCC-CcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEE
Confidence 4688999999 999999999999999999999998764 44443333
No 32
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=91.41 E-value=1.4 Score=35.72 Aligned_cols=65 Identities=9% Similarity=0.138 Sum_probs=46.5
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEee--eCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHHH
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC--SDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQAI 150 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~--~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~ai 150 (158)
..+.|++.|+.+ +|+...|-..|-++|..+..++-.+ ..| |.+.+.... . . .+...+++++...-
T Consensus 6 ~~~vLtv~c~Dr-~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~------~--~~~~~L~~~f~~la 73 (287)
T 3nrb_A 6 NQYVLSLACQDA-PGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-P------V--AGVNDFNSAFGKVV 73 (287)
T ss_dssp TEEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-C------C-----CHHHHHHHHHH
T ss_pred CeEEEEEECCCC-CCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-C------C--CCHHHHHHHHHHHH
Confidence 358899999999 9999999999999999999998863 234 666654321 1 1 23337777775443
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=90.61 E-value=1.5 Score=32.88 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=37.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC--CeEEEEEec
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--RFQLEAVGG 124 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~--~~~l~~~~~ 124 (158)
..|.|..+.+ ||.|.+|...|...|+++.+.++.+.. |.+.-.+.+
T Consensus 5 ~~IsV~veNr-pGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV 52 (165)
T 2pc6_A 5 HIISLLMENE-AGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVT 52 (165)
T ss_dssp EEEEEEEECS-TTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEE
T ss_pred EEEEEEEeCC-CcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEE
Confidence 5688999999 999999999999999999999998764 444433333
No 34
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=86.46 E-value=2 Score=33.06 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=34.2
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
..|.|..+.+ ||.|.+|...|...|+++.+..+.+.++
T Consensus 30 ~~LsVlVeN~-pGvLaRItglfsrRG~NI~SLtV~~ted 67 (193)
T 2fgc_A 30 HLVSMLVHNK-PGVMRKVANLFARRGFNISSITVGESET 67 (193)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHHTTTCEEEEEEEEECSS
T ss_pred EEEEEEECCC-ChHHHHHHHHHHHCCceEEEEEeeccCC
Confidence 5788899999 9999999999999999999999986543
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=84.16 E-value=3.8 Score=32.26 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=31.1
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
.+.|.|.+..+ +|+|.+|+..|-+.+.++.+.+.....
T Consensus 4 ~VtL~I~a~DR-pGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENK-IGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECC-TTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCC-CCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 47799999999 999999999999999999999998863
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=69.11 E-value=23 Score=24.64 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=31.8
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
..|.|..+.+ ||.+.+|...|.+.|+.+....+....+
T Consensus 7 ~~i~v~v~d~-~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 7 KQLSIFLENK-SGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEEECSS-SSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEEecCC-CcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 3577888999 9999999999999999998877665443
No 37
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=67.93 E-value=22 Score=28.59 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=33.0
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 78 ~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
..|-+..+.+ ||.|.++|..|...|++.....+-+..+
T Consensus 201 tsl~f~~~~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~ 238 (283)
T 2qmx_A 201 TSIVFALPNE-QGSLFRALATFALRGIDLTKIESRPSRK 238 (283)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHHTTTCCEEEEEEEECSS
T ss_pred EEEEEEcCCC-CchHHHHHHHHHHcCCCeeEEEeeEcCC
Confidence 4555556788 9999999999999999999999999864
No 38
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=67.11 E-value=29 Score=24.10 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=26.8
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 80 I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
+-+.-+.+ ||.+.+++.+|.+.|+.+....++
T Consensus 75 v~v~~~d~-pGvla~i~~~L~~~~InI~~~~~~ 106 (144)
T 2f06_A 75 VGISCPNV-PGALAKVLGFLSAEGVFIEYMYSF 106 (144)
T ss_dssp EEEEEESS-TTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEeCCC-CcHHHHHHHHHHHCCCCEEEEEEE
Confidence 45566788 999999999999999999765554
No 39
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=64.75 E-value=12 Score=23.28 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=26.4
Q ss_pred hHhHHHHHHHhhHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHhh
Q 031514 4 REQNKAALYEKLMLLRDVTNSTSMNKTSIVVDASKYIEELKQQVETLNQEI 54 (158)
Q Consensus 4 ER~RR~kln~~~~~LRsl~~~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~e~ 54 (158)
||++|.+...+.++-|+= .---.|+.+|+.+++.|+.+.
T Consensus 1 Ekr~rrrerNR~AA~rcR------------~rKk~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR------------NRRRELTDTLQAETDQLEDEK 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888762 223467777777777777653
No 40
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=63.77 E-value=5.3 Score=24.82 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCc
Q 031514 37 SKYIEELKQQVETLNQEIGTSE 58 (158)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~~~ 58 (158)
-.||..|+.+|+.|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999876654
No 41
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=63.15 E-value=44 Score=27.27 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=32.5
Q ss_pred EEEEEEec-cCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 78 FLINVYLE-KNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 78 ~~I~i~c~-~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
..|-+..+ .+ ||.|.++|..|...|++.....+-+..+
T Consensus 202 TSl~f~~~~~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~ 240 (313)
T 3mwb_A 202 TTVVVPLPEDH-PGALMEILDQFASRGVNLSRIESRPTGQ 240 (313)
T ss_dssp EEEEEECSSCC-TTHHHHHHHHHHTTTCCEEEEEEEECSS
T ss_pred EEEEEEeCCCC-CCHHHHHHHHHHHCCccEEEEEEeecCC
Confidence 55666665 67 9999999999999999999999998754
No 42
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=62.72 E-value=23 Score=28.24 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=34.2
Q ss_pred CeEEEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 76 KGFLINVYL---EKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 76 ~~~~I~i~c---~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
+...|-+.. +.+ ||.|.++|..|...|++.....+-+..+
T Consensus 185 ~ktsl~f~~~~~~~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~ 227 (267)
T 2qmw_A 185 NATSLMFLITPMHDK-PGLLASVLNTFALFNINLSWIESRPLKT 227 (267)
T ss_dssp SCSEEEEEEEESSCC-TTHHHHHHHHHHTTTCCEEEEEEEECSS
T ss_pred CeEEEEEEcCCCCCC-cChHHHHHHHHHHcCCCeeEEEEeecCC
Confidence 345666777 678 9999999999999999999999999754
No 43
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=56.29 E-value=47 Score=24.18 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=30.8
Q ss_pred EEecCeEEEEEE-eccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 72 ETLEKGFLINVY-LEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 72 ~~~~~~~~I~i~-c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
....+-+.|+|. -+.+ +|.+.+|++.|.+.|+.|.-...+++
T Consensus 10 a~~~~~~~Itv~~~~~~-~G~~a~if~~La~~~InId~i~~s~~ 52 (178)
T 2dtj_A 10 ATDKSEAKVTVLGISDK-PGEAAKVFRALADAEINIDMVLQNVS 52 (178)
T ss_dssp EEECSEEEEEEEEEECS-TTHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred EecCCEEEEEEecCCCC-ccHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 333455788884 5778 99999999999999966665544433
No 44
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=54.13 E-value=34 Score=24.60 Aligned_cols=41 Identities=22% Similarity=0.145 Sum_probs=32.2
Q ss_pred EEEecCeEEEEEEe-ccCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 71 VETLEKGFLINVYL-EKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 71 V~~~~~~~~I~i~c-~~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
|....+-..|+|.. +.+ ||.+.+|++.|...|+.|.....+
T Consensus 19 Ia~~~~~~~i~v~~~~~~-~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDK-PGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEECCCEEEEEEEEECC-TTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEecCCEEEEEEecCCCC-cCHHHHHHHHHHHcCCeEEEEEcC
Confidence 33344558888884 888 999999999999999888776543
No 45
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=53.31 E-value=7.7 Score=24.53 Aligned_cols=22 Identities=14% Similarity=0.437 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCc
Q 031514 37 SKYIEELKQQVETLNQEIGTSE 58 (158)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~~~ 58 (158)
-.||..|+.+|..||..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999998776543
No 46
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=52.83 E-value=94 Score=25.43 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=40.3
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeccccccccCCCCCCCHHHHHHHHHHH
Q 031514 86 KNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVLQA 149 (158)
Q Consensus 86 ~~~~gll~~il~aLe~l~L~V~~a~vs~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~~a 149 (158)
.+ ||.|.++|..|...|++.....+-+..+ +--+.|-++.. ...+...++++|...
T Consensus 217 ~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-------g~~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TG-PGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLD-------AAPWEERFRDALVEI 273 (329)
T ss_dssp CS-TTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEES-------SCTTSHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEe-------CCcCCHHHHHHHHHH
Confidence 47 9999999999999999999999999876 33334444442 233445677777654
No 47
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=52.28 E-value=8.3 Score=23.49 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 031514 38 KYIEELKQQVETLNQEIG 55 (158)
Q Consensus 38 ~YIk~Lq~~v~~Le~e~~ 55 (158)
.|+.+|+.+|..|+.+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~ 39 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNK 39 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998654
No 48
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=51.83 E-value=8.2 Score=23.68 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhccC
Q 031514 37 SKYIEELKQQVETLNQEIGTS 57 (158)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~~ 57 (158)
-.||..|+.++..|+..+..+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888888876543
No 49
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=51.61 E-value=7 Score=22.58 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=10.3
Q ss_pred HHHHHhhHHhhc
Q 031514 9 AALYEKLMLLRD 20 (158)
Q Consensus 9 ~kln~~~~~LRs 20 (158)
+.|..||.+|||
T Consensus 29 ~~MqsRLaALRS 40 (40)
T 2xze_Q 29 EAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 469999999997
No 50
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=50.74 E-value=51 Score=21.92 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=42.9
Q ss_pred eEEEEEEeccCC-CCHHHHHHHHHHhCCCeEEEEEEeeeC-C-eEEEEEeccccccccCCCCCCCHHHHHHHHH
Q 031514 77 GFLINVYLEKNC-SGLLVSVLEAFEDLGLEVLDARVSCSD-R-FQLEAVGGDFLQHIEGHADGIDAQVVKEAVL 147 (158)
Q Consensus 77 ~~~I~i~c~~~~-~gll~~il~aLe~l~L~V~~a~vs~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~vk~al~ 147 (158)
.+.|.|.|.... ..+..-++++|+..++.+.+..+..++ + ..+.+..... ..+...+.+.+-
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at---------~~~~~~Le~iv~ 72 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMV---------GHTPAKLERLVA 72 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEE---------SCCHHHHHHHHH
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEec---------CCCHHHHHHHHH
Confidence 478999997763 346788999999999999999966643 3 4466665443 345555554443
No 51
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=50.24 E-value=8 Score=22.52 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 031514 38 KYIEELKQQVETLNQEIG 55 (158)
Q Consensus 38 ~YIk~Lq~~v~~Le~e~~ 55 (158)
.|+.+|+.++++|+....
T Consensus 3 aYl~eLE~r~k~le~~na 20 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNS 20 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 488888888888876433
No 52
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=49.70 E-value=12 Score=24.02 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 031514 37 SKYIEELKQQVETLNQEI 54 (158)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~ 54 (158)
-.||++|+.+|.+|+...
T Consensus 28 ~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 479999999999998643
No 53
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=48.89 E-value=71 Score=22.85 Aligned_cols=39 Identities=5% Similarity=0.134 Sum_probs=30.6
Q ss_pred EEEecCeEEEEEEecc---CCCCHHHHHHHHHHhCCCeEEEEE
Q 031514 71 VETLEKGFLINVYLEK---NCSGLLVSVLEAFEDLGLEVLDAR 110 (158)
Q Consensus 71 V~~~~~~~~I~i~c~~---~~~gll~~il~aLe~l~L~V~~a~ 110 (158)
+...++-..|.|.... . ||.+.+++++|.+.|+.|....
T Consensus 97 i~~~~~~a~vsvvG~~m~~~-~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSH-VGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEESSEEEEEEECSSCTTC-CCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEecCCEEEEEEECCCcCCC-cCHHHHHHHHHHHCCCcEEEEE
Confidence 3344455677887765 6 9999999999999999998854
No 54
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=44.30 E-value=41 Score=24.49 Aligned_cols=25 Identities=12% Similarity=0.344 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccC
Q 031514 33 VVDASKYIEELKQQVETLNQEIGTS 57 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (158)
+.+..+-.+++|++.++++++++..
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~ 67 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEK 67 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3467778888889999888887644
No 55
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=42.75 E-value=25 Score=17.81 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=15.0
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 031514 31 SIVVDASKYIEELKQQVET 49 (158)
Q Consensus 31 SIl~dAI~YIk~Lq~~v~~ 49 (158)
|-|-+|-+|+.+|.++++.
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5577889999999888753
No 56
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=41.48 E-value=54 Score=24.49 Aligned_cols=79 Identities=9% Similarity=0.149 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cCccccCCCCCC--eEEEEEecCeEEEEEEeccCC-----CCHHHHHHHHHHhCCCeEE
Q 031514 36 ASKYIEELKQQVETLNQEIG-TSEASTVENSLP--VVTVETLEKGFLINVYLEKNC-----SGLLVSVLEAFEDLGLEVL 107 (158)
Q Consensus 36 AI~YIk~Lq~~v~~Le~e~~-~~~~~s~~~~~p--~V~V~~~~~~~~I~i~c~~~~-----~gll~~il~aLe~l~L~V~ 107 (158)
...|..+|-+++.-+-.+-. ...-.-++..+. +|.+++.++.+.+.+..+... .+.+.++-++|.+-||.+.
T Consensus 67 ~~~w~qqL~qqI~~~~~~g~q~a~IrL~PpeLG~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~ 146 (169)
T 2rrl_A 67 SHEWQQTFSQQVMLFTRQGQQSAQLRLHPEELGQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLG 146 (169)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCEEEECCSSGGGCCEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEE
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEECccccCcEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 45888888888887754321 111000111222 466666678899999997752 2457788899999999999
Q ss_pred EEEEeee
Q 031514 108 DARVSCS 114 (158)
Q Consensus 108 ~a~vs~~ 114 (158)
+++|+.-
T Consensus 147 ~v~Vs~~ 153 (169)
T 2rrl_A 147 QSSISSE 153 (169)
T ss_dssp EEEEESS
T ss_pred eEEEecC
Confidence 9999864
No 57
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=39.57 E-value=47 Score=22.92 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 031514 35 DASKYIEELKQQVETLNQEIGTS 57 (158)
Q Consensus 35 dAI~YIk~Lq~~v~~Le~e~~~~ 57 (158)
+-.+-.+++|++.++++++++..
T Consensus 12 ~mmkqaq~mQ~~m~~~QeeL~~~ 34 (112)
T 1j8b_A 12 GLMKQAQQMQEKMQKMQEEIAQL 34 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677889999999999988654
No 58
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=38.26 E-value=1.1e+02 Score=22.08 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=30.8
Q ss_pred EEEecCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEE
Q 031514 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDAR 110 (158)
Q Consensus 71 V~~~~~~~~I~i~c~---~~~~gll~~il~aLe~l~L~V~~a~ 110 (158)
+...++-+.|.|-.. .. ||.+.+++++|.+.|+.|.-.+
T Consensus 89 v~~~~~~a~VsvVG~gm~~~-~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSH-PGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp EEEESCEEEEEEEEECCTTC-HHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEeCCeEEEEEEcCCcccC-ccHHHHHHHHHHHCCCCEEEEE
Confidence 445556678888875 45 7999999999999999997754
No 59
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.41 E-value=41 Score=18.97 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.4
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhhc
Q 031514 27 MNKTSIVVDASKYIEELKQQVETLNQEIG 55 (158)
Q Consensus 27 ~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~ 55 (158)
|.-+.-|+++=..|..|+.+++.|..+..
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567789999999999999999998753
No 60
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=37.23 E-value=59 Score=27.87 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=33.9
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCC
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~ 116 (158)
...|-++.+.+ +|.|.++|..|...|+++.+..+-+..+
T Consensus 34 KTSLiFsl~n~-pGAL~~~L~~Fa~~gINLTkIESRPsk~ 72 (429)
T 1phz_A 34 AISLIFSLKEE-VGALAKVLRLFEENDINLTHIESRPSRL 72 (429)
T ss_dssp CEEEEEEEECC-TTHHHHHHHHHHTTTCCTTSEEEEECSS
T ss_pred eEEEEEEeCCC-ccHHHHHHHHHHHcCCceEEEEeeecCC
Confidence 35666677888 9999999999999999999999988754
No 61
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=36.59 E-value=42 Score=19.16 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 031514 33 VVDASKYIEELKQQVETLNQ 52 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~ 52 (158)
+.+--+||++|+++-.+|+.
T Consensus 5 vkelknyiqeleernaelkn 24 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKN 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHh
Confidence 44556899999998887765
No 62
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=36.43 E-value=27 Score=18.73 Aligned_cols=16 Identities=13% Similarity=0.582 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 031514 39 YIEELKQQVETLNQEI 54 (158)
Q Consensus 39 YIk~Lq~~v~~Le~e~ 54 (158)
.+++||+++..|+.-+
T Consensus 14 ivq~lq~r~drle~tv 29 (32)
T 2akf_A 14 IVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888888887643
No 63
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=35.62 E-value=1.2e+02 Score=21.58 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=30.9
Q ss_pred EEEecCeEEEEEEe-ccCCCCHHHHHHHHHHhCCCeEEEEEEe
Q 031514 71 VETLEKGFLINVYL-EKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (158)
Q Consensus 71 V~~~~~~~~I~i~c-~~~~~gll~~il~aLe~l~L~V~~a~vs 112 (158)
|....+-+.|+|.. +.+ +|.+.+++.+|.+.|+.|.-...+
T Consensus 10 Ia~~~~~a~Itv~g~~~~-~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQ-PGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp EEEECSEEEEEEEEEECS-TTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred EEEeCCEEEEEEecCCCC-CCHHHHHHHHHHHcCCcEEEEEcC
Confidence 33344557787776 667 999999999999999888776544
No 64
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=35.58 E-value=1.8e+02 Score=24.53 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=41.5
Q ss_pred CCCeEEEEEecCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCe
Q 031514 65 SLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRF 117 (158)
Q Consensus 65 ~~p~V~V~~~~~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~ 117 (158)
..|+|+.....+...|.+.=... ||.|.+|-..|-+.|+.|..-...+.+++
T Consensus 331 n~p~~~~~~~~~~~r~~~~h~n~-p~~~~~i~~~~~~~~~ni~~~~~~~~~~~ 382 (416)
T 3k5p_A 331 NFPQVQLPPRPTGTRFMHVHENR-PGILNSLMNVFSHHHINIASQFLQTDGEV 382 (416)
T ss_dssp SSCCCCCCCCSSSEEEEEEECCC-TTHHHHHHHHHHHTTCCEEEEEEEECSSC
T ss_pred eCCCcCCCCCCCceEEEEEecCC-ccHHHHHHHHHHHcCCCHHHHhccCCCce
Confidence 45676655554556777777888 99999999999999999999887777763
No 65
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=35.50 E-value=25 Score=22.74 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhccC
Q 031514 37 SKYIEELKQQVETLNQEIGTS 57 (158)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~~ 57 (158)
-.|+..|+.++..||..+..+
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999976544
No 66
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=35.43 E-value=2e+02 Score=24.55 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=32.8
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEeee
Q 031514 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (158)
Q Consensus 77 ~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~vs~~ 114 (158)
+..+-+.-+.+ ||.+.+|...|-+.++++-+.+++..
T Consensus 454 ~~~l~v~~~D~-PG~I~~v~~~Lg~~~INIa~m~v~r~ 490 (529)
T 1ygy_A 454 GINLIIHYVDR-PGALGKIGTLLGTAGVNIQAAQLSED 490 (529)
T ss_dssp SEEEEEEESCC-TTHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred ccEEEEEcCCC-CchHHHHHHHHHhcCCCeeeEEEecC
Confidence 45667777889 99999999999999999999999875
No 67
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=34.76 E-value=1.2e+02 Score=21.49 Aligned_cols=40 Identities=5% Similarity=-0.060 Sum_probs=30.3
Q ss_pred EEEEecCeEEEEEEecc---CCCCHHHHHHHHHHhCCCeEEEEE
Q 031514 70 TVETLEKGFLINVYLEK---NCSGLLVSVLEAFEDLGLEVLDAR 110 (158)
Q Consensus 70 ~V~~~~~~~~I~i~c~~---~~~gll~~il~aLe~l~L~V~~a~ 110 (158)
.+...++-+.|.|-... . ||.+.+++++|.+-|+.|.-.+
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~-~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLAST-PEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGS-THHHHHHHHHHHHTTCCCCEEE
T ss_pred cEEEeCCEEEEEEECCCcccC-cCHHHHHHHHHHHCCCCEEEEE
Confidence 34444555777777754 7 9999999999999999995543
No 68
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=34.11 E-value=74 Score=20.42 Aligned_cols=23 Identities=9% Similarity=-0.143 Sum_probs=15.8
Q ss_pred hHHHHHHHhhHHhhcC-CCCCCCc
Q 031514 6 QNKAALYEKLMLLRDV-TNSTSMN 28 (158)
Q Consensus 6 ~RR~kln~~~~~LRsl-~~~~K~D 28 (158)
+.|+...+....|+.. ||++..+
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s 30 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDA 30 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3344556788899999 8876543
No 69
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=33.44 E-value=70 Score=24.19 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=30.4
Q ss_pred EEEecCeEEEEEE-eccCCCCHHHHHHHHHHhCCCeEEEEE
Q 031514 71 VETLEKGFLINVY-LEKNCSGLLVSVLEAFEDLGLEVLDAR 110 (158)
Q Consensus 71 V~~~~~~~~I~i~-c~~~~~gll~~il~aLe~l~L~V~~a~ 110 (158)
|....+.+.|+|. .+.+ ||.+.+|+.+|.+.+++|.-..
T Consensus 29 Ia~~~~~a~Iti~g~~~~-pG~aa~IF~~La~~~InVDmI~ 68 (200)
T 4go7_X 29 VAHDRSEAKVTIVGLPDI-PGYAAKVFRAVADADVNIDMVL 68 (200)
T ss_dssp EEEECSEEEEEEEEEECS-TTHHHHHHHHHHHTTCCCCCEE
T ss_pred EEccCCEEEEEEecCCCC-ccHHHHHHHHHHHhCcceEEEe
Confidence 3444566788876 4778 9999999999999998776653
No 70
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=33.07 E-value=53 Score=17.00 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=16.0
Q ss_pred CCcccchhhHHHHHHHHHHHH
Q 031514 26 SMNKTSIVVDASKYIEELKQQ 46 (158)
Q Consensus 26 K~DKaSIl~dAI~YIk~Lq~~ 46 (158)
+++..-+|-+|-+|+...+++
T Consensus 1 ~~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHh
Confidence 355667889999999877664
No 71
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=31.81 E-value=1.5e+02 Score=21.62 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=29.7
Q ss_pred EEEecCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEE
Q 031514 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDAR 110 (158)
Q Consensus 71 V~~~~~~~~I~i~c~---~~~~gll~~il~aLe~l~L~V~~a~ 110 (158)
|...++-..|.|-.. .. ||.+.++.++|.+-++.+...+
T Consensus 90 v~~~~~va~VsvVG~gm~~~-~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 90 LLYDDHIGKVSLIGAGMRSH-PGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp EEEESCEEEEEEEEECCTTC-HHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEeCCEEEEEEEecccccC-chHHHHHHHHHHHCCCcEEEEE
Confidence 444455566776654 45 8999999999999999988777
No 72
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=30.38 E-value=52 Score=28.02 Aligned_cols=34 Identities=9% Similarity=0.231 Sum_probs=29.9
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEE
Q 031514 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDAR 110 (158)
Q Consensus 76 ~~~~I~i~c~~~~~gll~~il~aLe~l~L~V~~a~ 110 (158)
..+++++.+..+ ||.|.+|-..|-+.++++.+..
T Consensus 358 ~~yy~r~~~~d~-~gvl~~i~~~~~~~~isi~~~~ 391 (444)
T 3mtj_A 358 TAYYLRLRAFDR-PGVLADITRILADSSISIDAMV 391 (444)
T ss_dssp EEEEEEEEEC-C-CHHHHHHHHHHHHTTCCEEEEE
T ss_pred eeeEEEEEecCc-ccHHHHHHHHHHhcCCceeEEe
Confidence 359999999999 9999999999999999987754
No 73
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.53 E-value=31 Score=21.45 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 031514 37 SKYIEELKQQVETLNQEIG 55 (158)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~ 55 (158)
-.|+.+|+.+|+.|+.+..
T Consensus 29 ~~~~~~Le~~v~~L~~eN~ 47 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNY 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4688888888888877644
No 74
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=28.68 E-value=81 Score=21.29 Aligned_cols=37 Identities=8% Similarity=0.001 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhccCccccCCCCCCeEEEEEecCeEEEEEEeccC
Q 031514 41 EELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (158)
Q Consensus 41 k~Lq~~v~~Le~e~~~~~~~s~~~~~p~V~V~~~~~~~~I~i~c~~~ 87 (158)
+++|++.++++++++..+ |+.+.-++-|.|++++.+.
T Consensus 13 q~mQ~~m~~~QeeL~~~~----------v~g~sggG~V~Vt~~G~~e 49 (99)
T 3f42_A 13 DGMKKEFSQLEEKNKDTI----------HTSKSGGGMVSVSFNGLGE 49 (99)
T ss_dssp HHHHHHHHHHHHHHHTCE----------EEEEEGGGTEEEEEETTSC
T ss_pred HHHHHHHHHHHHHHhcCE----------EEEEECCCEEEEEEecCce
Confidence 899999999999886543 3333333335555555444
No 75
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=28.67 E-value=34 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhccC
Q 031514 37 SKYIEELKQQVETLNQEIGTS 57 (158)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~~ 57 (158)
-.|+..|+.+++.||..+..+
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999876544
No 76
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=28.07 E-value=20 Score=27.67 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=30.2
Q ss_pred HHHHHHHhhHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 031514 7 NKAALYEKLMLLRDVTNSTSMNKTSIVVDASKYIEELKQQVETLNQ 52 (158)
Q Consensus 7 RR~kln~~~~~LRsl~~~~K~DKaSIl~dAI~YIk~Lq~~v~~Le~ 52 (158)
=|..++.....||-|....=..--.++.|||+|++.|-+=...|++
T Consensus 52 v~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIKDDISNTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777774322122346789999999988776665543
No 77
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.91 E-value=86 Score=20.93 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=27.4
Q ss_pred CeEEEEEEec-----c-CCCCHHHHHHHHHHhCCCeEEEEEEeeeC
Q 031514 76 KGFLINVYLE-----K-NCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (158)
Q Consensus 76 ~~~~I~i~c~-----~-~~~gll~~il~aLe~l~L~V~~a~vs~~~ 115 (158)
..++|.+... . . +.++..+++.|..+| +|+.+++..-.
T Consensus 8 ~tv~V~~~~~~~~~~~fd-~~l~~~L~~~F~~~G-~Vi~vr~~~d~ 51 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFD-DALIDELLQQFASFG-EVILIRFVEDK 51 (91)
T ss_dssp CEEEEEEECSSTTTCSCC-HHHHHHHHHHHHTTC-CEEEEEECSSS
T ss_pred CeEEEEeccCccccccCC-HHHHHHHHHHHHhCC-CeEEEEEecCC
Confidence 3567777441 1 2 347899999999999 89999876643
No 78
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=27.42 E-value=16 Score=21.89 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 031514 36 ASKYIEELKQQVETLN 51 (158)
Q Consensus 36 AI~YIk~Lq~~v~~Le 51 (158)
.-.||..|+.+++.||
T Consensus 50 ~~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 50 TRAHLTEVESRLERLE 65 (66)
T ss_dssp CHHHHHHHHHHHTTC-
T ss_pred cHHHHHHHHHHHHHHc
Confidence 3579999999998876
No 79
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=27.35 E-value=39 Score=21.92 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=24.2
Q ss_pred eEEEEEec-CeEEEEEEeccCCCCHHHHHHHHHHh
Q 031514 68 VVTVETLE-KGFLINVYLEKNCSGLLVSVLEAFED 101 (158)
Q Consensus 68 ~V~V~~~~-~~~~I~i~c~~~~~gll~~il~aLe~ 101 (158)
+-+|.... +++.+.|+|+++ .=+|-.|=..+++
T Consensus 11 dW~VsRt~dGdYrL~itcpkK-e~LLqSIEgmik~ 44 (76)
T 2rp4_A 11 EWNVSRTPDGDYRLAITCPNK-EWLLQSIEGMIKE 44 (76)
T ss_dssp CCEEECCTTTBEEEEEEESCH-HHHHHHHHHHHHH
T ss_pred cceeeeccCCceEEEEEeCcH-HHHHHHHHHHHHH
Confidence 56777764 569999999999 7666666555543
No 80
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.27 E-value=35 Score=20.82 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 031514 37 SKYIEELKQQVETLNQEI 54 (158)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~ 54 (158)
-.|+.+|+.+++.|+.+.
T Consensus 21 k~~~~~Le~~v~~L~~~n 38 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQN 38 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357777777777777653
No 81
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=25.69 E-value=40 Score=22.28 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHH
Q 031514 33 VVDASKYIEELKQQV 47 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v 47 (158)
+.+|+.||+.++.+-
T Consensus 10 ~~~A~~YvnkVK~rF 24 (89)
T 1g1e_B 10 FNHAINYVNKIKNRF 24 (89)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 679999999999885
No 82
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=24.61 E-value=2e+02 Score=24.84 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=33.1
Q ss_pred CeEEEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEEEeeeCCeEEEE
Q 031514 76 KGFLINVYL---EKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEA 121 (158)
Q Consensus 76 ~~~~I~i~c---~~~~~gll~~il~aLe~l~L~V~~a~vs~~~~~~l~~ 121 (158)
+-+.|+|.. ... +|.+.+|+++|...++.|..... ..+++++.+
T Consensus 340 ~~~~I~i~~~~m~~~-~g~~~~if~~la~~~I~vd~I~s-se~sis~~v 386 (510)
T 2cdq_A 340 NVTMLDIASTRMLGQ-VGFLAKVFSIFEELGISVDVVAT-SEVSISLTL 386 (510)
T ss_dssp EEEEEEEECGGGTTC-TTHHHHHHHHHHHTTCCEEEEEE-ETTEEEEEE
T ss_pred CeEEEEEEcCCCCCc-ccHHHHHHHHHHHcCCcEEEEEe-CCCeEEEEE
Confidence 447899987 346 89999999999999999998843 334444443
No 83
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=23.93 E-value=46 Score=21.77 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHH
Q 031514 32 IVVDASKYIEELKQQVE 48 (158)
Q Consensus 32 Il~dAI~YIk~Lq~~v~ 48 (158)
-+.+|+.||+.++.+-+
T Consensus 6 ~~~~A~~yv~kVK~rF~ 22 (85)
T 1e91_A 6 EFNNAISYVNKIKTRFL 22 (85)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 36799999999998853
No 84
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.33 E-value=50 Score=20.00 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 031514 37 SKYIEELKQQVETLNQEIG 55 (158)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~ 55 (158)
-.|+.+|+.+++.|+.+..
T Consensus 21 k~~~~~Le~~~~~L~~~n~ 39 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNG 39 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3577778888777776543
No 85
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.78 E-value=91 Score=20.49 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 031514 33 VVDASKYIEELKQQVETLNQEI 54 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~ 54 (158)
+..||+-|.-||..+++|+.+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998754
No 86
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=21.25 E-value=91 Score=15.97 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhc
Q 031514 39 YIEELKQQVETLNQEIG 55 (158)
Q Consensus 39 YIk~Lq~~v~~Le~e~~ 55 (158)
-+|.|++.+-.|+-+++
T Consensus 9 nvkrlekevgklegeva 25 (28)
T 4dac_A 9 NVKRLEKEVGKLEGEVA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhhhhhhhh
Confidence 46777777777776654
No 87
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.06 E-value=82 Score=22.09 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=21.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcc
Q 031514 31 SIVVDASKYIEELKQQVETLNQEIGT 56 (158)
Q Consensus 31 SIl~dAI~YIk~Lq~~v~~Le~e~~~ 56 (158)
+|..++=.||-.|+.+|..|+.++..
T Consensus 33 ~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 33 NMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999987643
No 88
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=20.02 E-value=63 Score=20.65 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 031514 33 VVDASKYIEELKQQVE 48 (158)
Q Consensus 33 l~dAI~YIk~Lq~~v~ 48 (158)
+.||+.|++..+.+-+
T Consensus 4 ~~dA~~yl~~VK~~F~ 19 (77)
T 2czy_A 4 VEDALTYLDQVKIRFG 19 (77)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5799999999998864
Done!