BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031515
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
          Length = 151

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 76/115 (66%), Gaps = 6/115 (5%)

Query: 44  AMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVK 103
           A A    D  E P ++VF  D+PG+K  E+KV+VE  NVLVVSGER ++ ++K++    K
Sbjct: 40  AFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKND----K 95

Query: 104 YVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEK--VPPPQPKTIQVQ 156
           + R+ER  GKF+R+F L ++A VE++ A  ++GVL VTV K  V  P+ K IQ+ 
Sbjct: 96  WHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 150


>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
          Length = 100

 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 62/96 (64%), Gaps = 5/96 (5%)

Query: 51  DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
           D+ E  N +V   D+PGI  S+I+VQ++ + +L + GERK     + + +  ++ R+ERR
Sbjct: 8   DIKEEVNHFVLYADLPGIDPSQIEVQMD-KGILSIRGERK----SESSTETERFSRIERR 62

Query: 111 FGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146
           +G F R+F LPD+A+ + I+A  ++GVL + + K P
Sbjct: 63  YGSFHRRFALPDSADADGITAAGRNGVLEIRIPKRP 98


>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
          Length = 103

 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 62/96 (64%), Gaps = 5/96 (5%)

Query: 51  DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
           D+ E  N +V   D+PGI  S+I+VQ++ + +L + GERK     + + +  ++ R+ERR
Sbjct: 11  DIKEEVNHFVLYADLPGIDPSQIEVQMD-KGILSIRGERK----SESSTETERFSRIERR 65

Query: 111 FGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146
           +G F R+F LPD+A+ + I+A  ++GVL + + K P
Sbjct: 66  YGSFHRRFALPDSADADGITAAGRNGVLEIRIPKRP 101


>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
          Length = 101

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 67/94 (71%), Gaps = 4/94 (4%)

Query: 51  DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
           D  E P ++VF  D+PG+K  E+KV+VE  NVLVVSGER ++ ++K++    K+ R+ER 
Sbjct: 5   DWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKND----KWHRVERS 60

Query: 111 FGKFMRKFVLPDNANVEKISALCQDGVLIVTVEK 144
            GKF+R+F L ++A VE++ A  ++GVL VTV K
Sbjct: 61  SGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 94


>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
          Length = 93

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 67/94 (71%), Gaps = 4/94 (4%)

Query: 51  DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
           D  E P ++VF  D+PG+K  E+KV+VE  NVLVVSGER ++ ++K++    K+ R+ER 
Sbjct: 4   DWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKND----KWHRVERS 59

Query: 111 FGKFMRKFVLPDNANVEKISALCQDGVLIVTVEK 144
            GKF+R+F L ++A VE++ A  ++GVL VTV K
Sbjct: 60  SGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93


>pdb|4FEI|A Chain A, Hsp17.7 From Deinococcus Radiodurans
          Length = 102

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 50  ADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYV-RME 108
           AD  +       ++D+PG+ A  + +  E    L VSGER           G +++ R E
Sbjct: 9   ADWRDAGTHLDLLLDVPGVDAGTLAL-AEDGGQLTVSGERP----------GTEHLLRSE 57

Query: 109 RRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPP 147
           R  G+F+R+   P+        A    GVL V  EK+ P
Sbjct: 58  RPSGRFVRELAFPEPVRPASGVASLAGGVLTVRFEKLRP 96


>pdb|3VQL|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant
 pdb|3VQL|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant
 pdb|3VQM|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|C Chain C, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|D Chain D, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|E Chain E, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|F Chain F, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|G Chain G, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|H Chain H, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|I Chain I, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|J Chain J, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|K Chain K, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|L Chain L, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|M Chain M, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|N Chain N, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
          Length = 115

 Score = 37.4 bits (85), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 11/96 (11%)

Query: 49  PADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRME 108
           P D+ E     V V D+ G    +IK +V  +N L++  ER      +  + GVKY+   
Sbjct: 26  PVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAER------EITEPGVKYLTQR 79

Query: 109 RRFGKFMRKFV-LPDN-ANVEKISALCQDGVLIVTV 142
               K++RK + LP N A   +IS   ++GVL + +
Sbjct: 80  P---KYVRKVIRLPYNVAKDAEISGKYENGVLTIRI 112


>pdb|3VQK|A Chain A, Small Heat Shock Protein Hsp14.0 Of Wild Type
 pdb|3VQK|B Chain B, Small Heat Shock Protein Hsp14.0 Of Wild Type
 pdb|3VQK|C Chain C, Small Heat Shock Protein Hsp14.0 Of Wild Type
 pdb|3VQK|D Chain D, Small Heat Shock Protein Hsp14.0 Of Wild Type
 pdb|3VQK|E Chain E, Small Heat Shock Protein Hsp14.0 Of Wild Type
 pdb|3VQK|F Chain F, Small Heat Shock Protein Hsp14.0 Of Wild Type
          Length = 123

 Score = 37.4 bits (85), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 14/110 (12%)

Query: 49  PADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRME 108
           P D+ E     V V D+ G    +IK +V  +N L++  ER      +  + GVKY+   
Sbjct: 26  PVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAER------EITEPGVKYLTQR 79

Query: 109 RRFGKFMRKFV-LPDN-ANVEKISALCQDGVLIVTVEKVPPPQPKTIQVQ 156
               K++RK + LP N A   +IS   ++GVL +   ++P      I+++
Sbjct: 80  P---KYVRKVIRLPYNVAKDAEISGKYENGVLTI---RIPIAGTSVIKIE 123


>pdb|3AAB|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
           I120f And I122f In The Form I Crystal
 pdb|3AAB|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
           I120f And I122f In The Form I Crystal
 pdb|3AAC|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
           I120f And I122f In The Form Ii Crystal
 pdb|3AAC|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
           I120f And I122f In The Form Ii Crystal
          Length = 123

 Score = 37.4 bits (85), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 11/96 (11%)

Query: 49  PADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRME 108
           P D+ E     V V D+ G    +IK +V  +N L++  ER      +  + GVKY+   
Sbjct: 26  PVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAER------EITEPGVKYLTQR 79

Query: 109 RRFGKFMRKFV-LPDN-ANVEKISALCQDGVLIVTV 142
               K++RK + LP N A   +IS   ++GVL + +
Sbjct: 80  P---KYVRKVIRLPYNVAKDAEISGKYENGVLTIRI 112


>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
 pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
          Length = 393

 Score = 31.6 bits (70), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 13/93 (13%)

Query: 47  ATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVR 106
           A+P D++   N Y+ + + P IKA   K  +E +  L +S    ++  +K          
Sbjct: 37  ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKP--------M 88

Query: 107 MERRFGKF--MRKFVLPD---NANVEKISALCQ 134
           +E+R  KF    + +L     NANV  +  +CQ
Sbjct: 89  IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQ 121


>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
 pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
 pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
 pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
 pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
           Cholerae Cqsa
 pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
           Cholerae Cqsa
          Length = 389

 Score = 31.6 bits (70), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 13/93 (13%)

Query: 47  ATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVR 106
           A+P D++   N Y+ + + P IKA   K  +E +  L +S    ++  +K          
Sbjct: 37  ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKP--------M 88

Query: 107 MERRFGKF--MRKFVLPD---NANVEKISALCQ 134
           +E+R  KF    + +L     NANV  +  +CQ
Sbjct: 89  IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQ 121


>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
 pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
 pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
 pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
          Length = 409

 Score = 31.6 bits (70), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 13/93 (13%)

Query: 47  ATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVR 106
           A+P D++   N Y+ + + P IKA   K  +E +  L +S    ++  +K          
Sbjct: 57  ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKP--------M 108

Query: 107 MERRFGKF--MRKFVLPD---NANVEKISALCQ 134
           +E+R  KF    + +L     NANV  +  +CQ
Sbjct: 109 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQ 141


>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
          Domain Of The Cell Polarity Protein, Par6
 pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
          Domain Of The Cell Polarity Protein, Par6
          Length = 128

 Score = 26.6 bits (57), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 12 PFFSILEDVLELPEEQENTR------NNPSRAYVRDAKAMAATPADVVEYPNSYVFVVDM 65
          P  SI+ DV  LPE     R        P   Y+RD  ++  TP  + + P  ++  + +
Sbjct: 16 PVSSII-DVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRL-V 73

Query: 66 PGIKASEIKVQVESENVLVVSG 87
          PG  A    +   ++ VL V+G
Sbjct: 74 PGGLAQSTGLLAVNDEVLEVNG 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,655,710
Number of Sequences: 62578
Number of extensions: 177314
Number of successful extensions: 419
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 15
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)