Query 031515
Match_columns 158
No_of_seqs 151 out of 1150
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 15:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 5.9E-30 1.3E-34 183.6 14.8 103 45-156 30-135 (142)
2 COG0071 IbpA Molecular chapero 100.0 4.4E-29 9.5E-34 180.7 14.7 107 45-156 38-146 (146)
3 PRK10743 heat shock protein Ib 100.0 4.1E-29 9E-34 178.6 13.9 101 47-156 34-137 (137)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 9.1E-27 2E-31 156.2 12.1 92 49-144 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 7.5E-25 1.6E-29 149.1 12.4 99 51-156 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 7.3E-25 1.6E-29 147.1 11.8 93 48-144 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 3.9E-24 8.6E-29 142.9 12.7 89 48-144 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 1.2E-23 2.7E-28 139.4 10.9 82 51-144 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 3.9E-23 8.4E-28 136.1 10.7 82 51-144 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 5.4E-23 1.2E-27 135.7 10.7 82 52-145 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 6.2E-23 1.3E-27 134.3 9.1 79 51-144 2-81 (81)
12 cd06476 ACD_HspB2_like Alpha c 99.9 3.5E-22 7.5E-27 131.5 10.5 81 52-144 2-83 (83)
13 cd06475 ACD_HspB1_like Alpha c 99.9 6.2E-22 1.3E-26 131.2 10.8 82 50-143 3-85 (86)
14 cd06481 ACD_HspB9_like Alpha c 99.9 6.8E-22 1.5E-26 131.3 9.8 83 54-144 4-87 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 3.8E-21 8.3E-26 126.7 11.7 88 51-144 1-88 (88)
16 cd06477 ACD_HspB3_Like Alpha c 99.9 4.9E-21 1.1E-25 125.9 10.5 78 54-143 4-82 (83)
17 cd06482 ACD_HspB10 Alpha cryst 99.9 3.8E-21 8.2E-26 127.4 9.8 80 55-143 6-86 (87)
18 cd06526 metazoan_ACD Alpha-cry 99.8 7.3E-21 1.6E-25 125.2 8.5 78 55-144 5-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 7.6E-19 1.6E-23 132.8 8.4 114 42-157 79-194 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.8 3E-18 6.4E-23 114.3 10.0 83 50-144 8-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.8 3.3E-17 7.1E-22 121.3 13.4 98 48-157 63-163 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 1.4E-14 3E-19 92.4 9.8 80 52-144 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 3.9E-12 8.4E-17 82.2 9.5 70 53-147 2-71 (78)
24 cd06463 p23_like Proteins cont 99.1 1E-09 2.2E-14 70.9 9.7 75 53-147 2-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.1 1E-09 2.3E-14 80.8 10.7 79 47-149 91-172 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.9 8E-09 1.7E-13 67.3 8.0 77 51-147 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.6 1.3E-06 2.8E-11 55.7 11.5 77 48-144 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.4 8.1E-06 1.8E-10 55.9 10.5 78 48-146 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.2 1.2E-05 2.6E-10 64.8 8.8 65 56-143 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.2 3E-05 6.5E-10 50.6 9.0 78 51-148 1-78 (84)
31 cd06467 p23_NUDC_like p23_like 98.1 6.1E-05 1.3E-09 49.0 9.5 75 50-147 1-77 (85)
32 cd06468 p23_CacyBP p23_like do 98.0 0.00016 3.5E-09 47.8 10.0 79 49-147 3-85 (92)
33 cd06488 p23_melusin_like p23_l 97.9 0.00029 6.2E-09 46.4 10.3 80 49-148 2-81 (87)
34 cd06493 p23_NUDCD1_like p23_NU 97.9 0.00029 6.3E-09 46.1 10.3 76 50-148 1-78 (85)
35 cd00237 p23 p23 binds heat sho 97.6 0.0024 5.2E-08 43.7 10.7 79 48-148 2-80 (106)
36 cd06494 p23_NUDCD2_like p23-li 97.5 0.0015 3.3E-08 43.6 9.3 78 47-148 5-84 (93)
37 PLN03088 SGT1, suppressor of 97.0 0.0083 1.8E-07 49.3 9.6 80 48-147 157-236 (356)
38 cd06490 p23_NCB5OR p23_like do 96.9 0.028 6.1E-07 36.9 10.3 77 50-148 1-81 (87)
39 cd06492 p23_mNUDC_like p23-lik 96.8 0.017 3.8E-07 37.9 8.6 74 51-147 2-79 (87)
40 KOG1309 Suppressor of G2 allel 96.8 0.0077 1.7E-07 44.8 7.2 81 47-147 3-83 (196)
41 cd06495 p23_NUDCD3_like p23-li 96.3 0.12 2.5E-06 35.2 10.2 81 47-147 4-87 (102)
42 KOG3158 HSP90 co-chaperone p23 88.9 2.7 5.9E-05 31.2 7.0 82 45-148 5-86 (180)
43 PF13349 DUF4097: Domain of un 88.2 6.9 0.00015 27.8 8.9 82 48-141 66-147 (166)
44 cd06482 ACD_HspB10 Alpha cryst 85.2 2.2 4.9E-05 27.9 4.4 34 113-147 9-42 (87)
45 KOG2265 Nuclear distribution p 84.2 11 0.00024 28.1 8.1 81 44-147 15-97 (179)
46 PF14913 DPCD: DPCD protein fa 83.8 13 0.00028 28.1 8.4 76 48-146 87-170 (194)
47 cd06470 ACD_IbpA-B_like Alpha- 82.9 3.7 7.9E-05 26.8 4.8 36 112-148 11-46 (90)
48 cd06476 ACD_HspB2_like Alpha c 81.3 4.6 9.9E-05 26.1 4.7 33 113-146 8-40 (83)
49 cd06497 ACD_alphaA-crystallin_ 80.3 5.3 0.00012 25.9 4.8 33 113-146 11-43 (86)
50 cd06478 ACD_HspB4-5-6 Alpha-cr 80.2 5.7 0.00012 25.5 4.9 33 113-146 8-40 (83)
51 cd06471 ACD_LpsHSP_like Group 79.8 5.3 0.00011 25.9 4.7 33 113-146 11-43 (93)
52 cd06477 ACD_HspB3_Like Alpha c 79.8 4.8 0.0001 26.1 4.4 33 114-147 9-41 (83)
53 KOG1667 Zn2+-binding protein M 78.0 17 0.00038 28.8 7.6 86 46-150 213-298 (320)
54 PRK10743 heat shock protein Ib 77.8 6.4 0.00014 28.0 4.9 33 114-147 47-79 (137)
55 PF08308 PEGA: PEGA domain; I 75.8 11 0.00024 23.0 5.1 44 48-91 25-69 (71)
56 cd06526 metazoan_ACD Alpha-cry 75.5 6.9 0.00015 24.9 4.2 34 113-147 8-41 (83)
57 cd06479 ACD_HspB7_like Alpha c 75.0 8.4 0.00018 24.8 4.5 33 113-146 9-41 (81)
58 cd06481 ACD_HspB9_like Alpha c 74.2 8.6 0.00019 25.0 4.5 32 114-146 9-40 (87)
59 cd06475 ACD_HspB1_like Alpha c 73.9 12 0.00025 24.3 5.0 33 113-146 11-43 (86)
60 COG5091 SGT1 Suppressor of G2 73.4 2.1 4.5E-05 34.4 1.5 81 49-148 178-258 (368)
61 cd06498 ACD_alphaB-crystallin_ 73.3 11 0.00024 24.3 4.8 33 113-146 8-40 (84)
62 PF00011 HSP20: Hsp20/alpha cr 73.0 12 0.00027 24.4 5.1 33 112-145 7-39 (102)
63 cd06472 ACD_ScHsp26_like Alpha 71.9 14 0.0003 23.9 5.1 33 113-146 10-43 (92)
64 PF01954 DUF104: Protein of un 71.3 8.1 0.00018 23.5 3.5 30 127-157 3-32 (60)
65 PRK11597 heat shock chaperone 70.4 13 0.00028 26.7 5.0 32 114-146 45-76 (142)
66 cd06480 ACD_HspB8_like Alpha-c 69.4 12 0.00026 24.7 4.3 31 57-87 58-89 (91)
67 KOG3260 Calcyclin-binding prot 66.9 27 0.00059 26.3 6.1 79 50-148 77-156 (224)
68 cd06464 ACD_sHsps-like Alpha-c 66.8 17 0.00036 22.6 4.6 34 113-147 8-41 (88)
69 PRK05518 rpl6p 50S ribosomal p 61.3 53 0.0011 24.5 6.9 46 69-143 12-57 (180)
70 PF12992 DUF3876: Domain of un 61.2 33 0.00072 22.9 5.2 42 44-86 22-68 (95)
71 TIGR03653 arch_L6P archaeal ri 60.3 60 0.0013 24.0 7.0 45 70-143 7-51 (170)
72 KOG3591 Alpha crystallins [Pos 59.5 14 0.0003 27.4 3.5 35 59-93 117-152 (173)
73 cd06469 p23_DYX1C1_like p23_li 58.9 36 0.00078 20.9 5.0 32 57-89 36-68 (78)
74 COG0071 IbpA Molecular chapero 57.4 26 0.00057 24.8 4.6 32 114-146 52-83 (146)
75 TIGR03654 L6_bact ribosomal pr 56.0 67 0.0015 23.7 6.7 44 70-143 11-54 (175)
76 PF04972 BON: BON domain; Int 55.2 34 0.00075 20.2 4.3 26 66-92 12-37 (64)
77 CHL00140 rpl6 ribosomal protei 54.4 66 0.0014 23.9 6.4 44 70-143 12-55 (178)
78 PTZ00027 60S ribosomal protein 52.5 73 0.0016 24.0 6.5 48 69-143 12-59 (190)
79 PRK05498 rplF 50S ribosomal pr 52.2 74 0.0016 23.5 6.4 44 70-143 12-55 (178)
80 PF00347 Ribosomal_L6: Ribosom 51.5 41 0.00089 20.7 4.4 44 70-143 2-47 (77)
81 cd06467 p23_NUDC_like p23_like 50.7 38 0.00081 21.2 4.1 30 114-143 10-39 (85)
82 cd06494 p23_NUDCD2_like p23-li 45.2 48 0.001 21.8 4.0 32 112-143 15-46 (93)
83 KOG3413 Mitochondrial matrix p 41.1 13 0.00029 26.9 0.9 23 122-144 67-89 (156)
84 PF14730 DUF4468: Domain of un 38.0 99 0.0022 20.0 4.7 17 128-144 69-85 (91)
85 cd00503 Frataxin Frataxin is a 38.0 36 0.00077 23.1 2.6 18 127-144 28-45 (105)
86 PTZ00179 60S ribosomal protein 37.2 1.6E+02 0.0034 22.1 6.2 18 70-88 12-29 (189)
87 PF01491 Frataxin_Cyay: Fratax 37.1 45 0.00097 22.6 3.0 17 128-144 31-47 (109)
88 PF15631 Imm-NTF2-2: NTF2 fold 36.0 1.1E+02 0.0024 19.0 5.4 41 47-87 21-64 (66)
89 PRK00446 cyaY frataxin-like pr 35.2 36 0.00079 23.1 2.3 17 129-145 29-45 (105)
90 COG0097 RplF Ribosomal protein 35.0 1.8E+02 0.004 21.7 6.1 23 66-89 8-30 (178)
91 TIGR03421 FeS_CyaY iron donor 34.8 35 0.00076 23.0 2.1 17 128-144 26-42 (102)
92 PF14814 UB2H: Bifunctional tr 29.6 1.2E+02 0.0027 19.3 4.0 43 100-142 29-73 (85)
93 TIGR03422 mito_frataxin fratax 28.2 40 0.00086 22.5 1.5 16 130-145 30-45 (97)
94 PF14014 DUF4230: Protein of u 26.6 43 0.00093 23.7 1.6 31 117-147 45-80 (157)
95 COG4004 Uncharacterized protei 25.5 1.8E+02 0.0039 19.4 4.1 33 50-87 26-58 (96)
96 PF08126 Propeptide_C25: Prope 24.8 1.4E+02 0.003 22.7 4.1 61 48-122 9-73 (202)
97 PF06964 Alpha-L-AF_C: Alpha-L 24.7 1.1E+02 0.0024 22.2 3.5 28 118-145 149-176 (177)
98 PF10988 DUF2807: Protein of u 24.6 1.9E+02 0.004 20.7 4.7 32 115-147 22-53 (181)
99 PF13620 CarboxypepD_reg: Carb 24.5 1E+02 0.0022 18.8 2.9 30 56-85 47-77 (82)
100 KOG3247 Uncharacterized conser 24.3 45 0.00098 28.4 1.5 77 47-148 3-82 (466)
101 cd02178 GH16_beta_agarase Beta 22.2 3.8E+02 0.0081 20.7 6.3 44 75-122 60-109 (258)
102 PF03983 SHD1: SLA1 homology d 22.1 67 0.0015 20.2 1.6 35 51-85 14-48 (70)
103 PF14913 DPCD: DPCD protein fa 21.9 1.2E+02 0.0026 23.0 3.2 41 50-91 123-170 (194)
104 COG2880 Uncharacterized protei 21.7 7.9 0.00017 24.2 -2.6 12 129-140 7-18 (67)
105 PRK11198 LysM domain/BON super 21.5 1.6E+02 0.0035 20.9 3.8 25 66-91 38-62 (147)
106 PRK14290 chaperone protein Dna 21.4 4.2E+02 0.0091 21.8 6.7 29 117-145 277-305 (365)
107 PF09985 DUF2223: Domain of un 21.3 3.1E+02 0.0068 21.2 5.5 94 49-147 35-144 (228)
108 PF06977 SdiA-regulated: SdiA- 20.8 4.2E+02 0.009 20.7 8.2 70 58-141 9-81 (248)
109 COG4456 VagC Virulence-associa 20.6 1.5E+02 0.0032 18.9 2.9 22 63-88 20-41 (74)
110 cd02182 GH16_Strep_laminarinas 20.2 2.8E+02 0.0061 21.5 5.2 19 70-91 45-64 (259)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.97 E-value=5.9e-30 Score=183.63 Aligned_cols=103 Identities=20% Similarity=0.375 Sum_probs=90.7
Q ss_pred CCCCceeEEE-eCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCC
Q 031515 45 MAATPADVVE-YPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDN 123 (158)
Q Consensus 45 ~~~p~~~i~e-~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~ 123 (158)
...|+++|++ ++++|+|+++|||+++++|+|.++ ++.|+|+|++... .++.+|+++|+.+|.|+|+|.||.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~-~~~LtI~ge~~~~------~~~~~~~~~Er~~g~F~R~f~LP~~ 102 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLE-GTRLTVKGTPEQP------EKEVKWLHQGLVNQPFSLSFTLAEN 102 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEE-CCEEEEEEEEccc------cCCCcEEEEEEeCcEEEEEEECCCC
Confidence 3458999998 477999999999999999999999 5899999997532 2567899999999999999999999
Q ss_pred cccCCeeEEEeCCEEEEEEecC--CCCCCceEEEe
Q 031515 124 ANVEKISALCQDGVLIVTVEKV--PPPQPKTIQVQ 156 (158)
Q Consensus 124 vd~~~i~A~~~nGvL~I~~pk~--~~~~~~~I~I~ 156 (158)
||.+ +|+|+||+|+|++||. +..++++|+|+
T Consensus 103 vd~~--~A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 103 MEVS--GATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred cccC--cCEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 9998 7999999999999997 44566899886
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.4e-29 Score=180.73 Aligned_cols=107 Identities=34% Similarity=0.685 Sum_probs=98.6
Q ss_pred CCCCceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCc
Q 031515 45 MAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNA 124 (158)
Q Consensus 45 ~~~p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~v 124 (158)
.+.|+++|+++++.|+|.++|||+++++|+|.++ ++.|+|+|++.... ..++..++++|+.+|.|+|+|.||..|
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~-~~~l~I~g~~~~~~----~~~~~~~~~~e~~~~~f~r~~~Lp~~v 112 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVE-GNTLTIRGEREEEE----EEEEEGYLRRERAYGEFERTFRLPEKV 112 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEE-CCEEEEEEEecccc----cccCCceEEEEEEeeeEEEEEECcccc
Confidence 4689999999999999999999999999999999 58999999998755 567889999999999999999999999
Q ss_pred ccCCeeEEEeCCEEEEEEecCCCC--CCceEEEe
Q 031515 125 NVEKISALCQDGVLIVTVEKVPPP--QPKTIQVQ 156 (158)
Q Consensus 125 d~~~i~A~~~nGvL~I~~pk~~~~--~~~~I~I~ 156 (158)
+.+.++|+|+||+|+|++||..+. ++++|+|+
T Consensus 113 ~~~~~~A~~~nGvL~I~lpk~~~~~~~~~~i~I~ 146 (146)
T COG0071 113 DPEVIKAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146 (146)
T ss_pred cccceeeEeeCcEEEEEEeccccccccCceeecC
Confidence 999999999999999999999987 45777764
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=4.1e-29 Score=178.62 Aligned_cols=101 Identities=27% Similarity=0.455 Sum_probs=89.0
Q ss_pred CCceeEEE-eCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcc
Q 031515 47 ATPADVVE-YPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNAN 125 (158)
Q Consensus 47 ~p~~~i~e-~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd 125 (158)
.|+++|.+ ++++|.|+++|||++++||+|++++ +.|+|+|++.... ++.+|+++|+.+|+|+|+|.||.+||
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~------~~~~~~~~Er~~g~F~R~~~LP~~Vd 106 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQ------KERTYLYQGIAERNFERKFQLAENIH 106 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccc------cCCcEEEEEEECCEEEEEEECCCCcc
Confidence 38999995 8999999999999999999999995 7999999975432 45679999999999999999999999
Q ss_pred cCCeeEEEeCCEEEEEEecCC--CCCCceEEEe
Q 031515 126 VEKISALCQDGVLIVTVEKVP--PPQPKTIQVQ 156 (158)
Q Consensus 126 ~~~i~A~~~nGvL~I~~pk~~--~~~~~~I~I~ 156 (158)
.+ +|+|+||+|+|++||.. ..++++|+|+
T Consensus 107 ~~--~A~~~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 107 VR--GANLVNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred cC--cCEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence 99 59999999999999973 3456888874
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=9.1e-27 Score=156.23 Aligned_cols=92 Identities=45% Similarity=0.775 Sum_probs=84.9
Q ss_pred ceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCC
Q 031515 49 PADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEK 128 (158)
Q Consensus 49 ~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 128 (158)
++||+|+++.|+|.++|||+++++|+|++.+++.|+|+|++.... ..++..+++.|+.+|.|.|+|.||.+|+.++
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~----~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~ 76 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEE----EKKGDDWHRVERSSGRFVRRFRLPENADADE 76 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccc----cccCCCEEEEEEeccEEEEEEECCCCCCHHH
Confidence 479999999999999999999999999999546899999987665 4467889999999999999999999999999
Q ss_pred eeEEEeCCEEEEEEec
Q 031515 129 ISALCQDGVLIVTVEK 144 (158)
Q Consensus 129 i~A~~~nGvL~I~~pk 144 (158)
|+|.|+||+|+|++||
T Consensus 77 i~A~~~nGvL~I~lPK 92 (92)
T cd06472 77 VKAFLENGVLTVTVPK 92 (92)
T ss_pred CEEEEECCEEEEEecC
Confidence 9999999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.93 E-value=7.5e-25 Score=149.13 Aligned_cols=99 Identities=38% Similarity=0.733 Sum_probs=82.1
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCee
Q 031515 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKIS 130 (158)
Q Consensus 51 ~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
||.+++++|.|.++|||+++++|+|++.+ +.|+|+|++. . ...+..+...+++.+.|.|+|.||.++|.++|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~--~----~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~ 73 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRK--E----EEEDDRYYRSERRYGSFERSIRLPEDVDPDKIK 73 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEE--G----EECTTCEEEE-S-SEEEEEEEE-STTB-GGG-E
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceee--e----eeeeeeeeecccccceEEEEEcCCCcCCcceEE
Confidence 68999999999999999999999999995 7999999999 2 235667788899999999999999999999999
Q ss_pred EEEeCCEEEEEEecCCCCC---CceEEEe
Q 031515 131 ALCQDGVLIVTVEKVPPPQ---PKTIQVQ 156 (158)
Q Consensus 131 A~~~nGvL~I~~pk~~~~~---~~~I~I~ 156 (158)
|.|+||+|+|++||....+ +++|+|+
T Consensus 74 a~~~~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 74 ASYENGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEETTSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEecCCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999999998874 4888875
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=7.3e-25 Score=147.13 Aligned_cols=93 Identities=34% Similarity=0.632 Sum_probs=83.3
Q ss_pred CceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031515 48 TPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVE 127 (158)
Q Consensus 48 p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
++++|.|+++.|+|.++|||+++++|+|.+. ++.|+|+|++.....+ ......++++|+.+|.|.|+|.|| +++.+
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~-~~~L~I~g~~~~~~~~--~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~ 76 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYK-DGYLTISAKRDESKDE--KDKKGNYIRRERYYGSFSRSFYLP-NVDEE 76 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcccccc--ccccCCEEEEeeeccEEEEEEECC-CCCHH
Confidence 3689999999999999999999999999999 5899999998865411 233467999999999999999999 79999
Q ss_pred CeeEEEeCCEEEEEEec
Q 031515 128 KISALCQDGVLIVTVEK 144 (158)
Q Consensus 128 ~i~A~~~nGvL~I~~pk 144 (158)
.|+|+|+||+|+|++||
T Consensus 77 ~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 77 EIKAKYENGVLKITLPK 93 (93)
T ss_pred HCEEEEECCEEEEEEcC
Confidence 99999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.92 E-value=3.9e-24 Score=142.93 Aligned_cols=89 Identities=25% Similarity=0.499 Sum_probs=81.5
Q ss_pred CceeEEEeC-CEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCccc
Q 031515 48 TPADVVEYP-NSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANV 126 (158)
Q Consensus 48 p~~~i~e~~-d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~ 126 (158)
|+++|.+++ +.|+|.++|||+++++|+|.+. ++.|+|+|++.... . ++.+|+++|+..|+|.|+|.||.+++.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~-~~~L~I~g~~~~~~----~-~~~~~~~~e~~~g~f~R~~~LP~~vd~ 74 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVE-NNQLTVTGKKADEE----N-EEREYLHRGIAKRAFERSFNLADHVKV 74 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcccc----c-CCCcEEEEEEeceEEEEEEECCCCceE
Confidence 679999975 8999999999999999999999 58999999998776 3 667899999999999999999999987
Q ss_pred CCeeEEEeCCEEEEEEec
Q 031515 127 EKISALCQDGVLIVTVEK 144 (158)
Q Consensus 127 ~~i~A~~~nGvL~I~~pk 144 (158)
. +|+|+||+|+|++|+
T Consensus 75 ~--~A~~~~GvL~I~l~~ 90 (90)
T cd06470 75 K--GAELENGLLTIDLER 90 (90)
T ss_pred C--eeEEeCCEEEEEEEC
Confidence 5 999999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.91 E-value=1.2e-23 Score=139.35 Aligned_cols=82 Identities=22% Similarity=0.432 Sum_probs=72.8
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCee
Q 031515 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKIS 130 (158)
Q Consensus 51 ~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
+|.+++++|.|.++|||+++++|+|++.+ +.|+|+|++.... ++..|.++| |.|+|.||++||.++|+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~------~~~~~~~~e-----f~R~~~LP~~Vd~~~i~ 71 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQ------DDHGYISRE-----FHRRYRLPSNVDQSAIT 71 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee------CCCCEEEEE-----EEEEEECCCCCChHHeE
Confidence 78999999999999999999999999995 8999999864332 344566554 99999999999999999
Q ss_pred EEE-eCCEEEEEEec
Q 031515 131 ALC-QDGVLIVTVEK 144 (158)
Q Consensus 131 A~~-~nGvL~I~~pk 144 (158)
|+| +||+|+|++||
T Consensus 72 A~~~~dGvL~I~~PK 86 (86)
T cd06497 72 CSLSADGMLTFSGPK 86 (86)
T ss_pred EEeCCCCEEEEEecC
Confidence 999 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.90 E-value=3.9e-23 Score=136.14 Aligned_cols=82 Identities=21% Similarity=0.400 Sum_probs=71.4
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCee
Q 031515 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKIS 130 (158)
Q Consensus 51 ~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
+|.+++++|.|.++|||+++++|+|++. ++.|+|+|++.... ++..|++++ |+|+|.||.+||.++|+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~------~~~~~~~~e-----f~R~~~LP~~vd~~~i~ 68 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVL-GDFVEIHGKHEERQ------DEHGFISRE-----FHRRYRLPPGVDPAAIT 68 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEceEc------CCCCEEEEE-----EEEEEECCCCcChHHeE
Confidence 3678999999999999999999999999 48999999865332 234566554 99999999999999999
Q ss_pred EEE-eCCEEEEEEec
Q 031515 131 ALC-QDGVLIVTVEK 144 (158)
Q Consensus 131 A~~-~nGvL~I~~pk 144 (158)
|+| +||+|+|++||
T Consensus 69 A~~~~dGvL~I~~PK 83 (83)
T cd06478 69 SSLSADGVLTISGPR 83 (83)
T ss_pred EEECCCCEEEEEecC
Confidence 999 69999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.90 E-value=5.4e-23 Score=135.69 Aligned_cols=82 Identities=21% Similarity=0.376 Sum_probs=71.0
Q ss_pred EEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeE
Q 031515 52 VVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISA 131 (158)
Q Consensus 52 i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 131 (158)
+.+++++|.|.++|||+++++|+|++. ++.|+|+|++.... ++..|+++ .|.|+|.||.+||.++|+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~------~~~~~~~~-----eF~R~~~LP~~vd~~~i~A 69 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVL-GDFIEIHGKHEERQ------DEHGFISR-----EFQRKYRIPADVDPLTITS 69 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEccee------CCCCEEEE-----EEEEEEECCCCCChHHcEE
Confidence 567889999999999999999999999 58999999865333 33456544 4999999999999999999
Q ss_pred EEe-CCEEEEEEecC
Q 031515 132 LCQ-DGVLIVTVEKV 145 (158)
Q Consensus 132 ~~~-nGvL~I~~pk~ 145 (158)
+|+ ||+|+|++||+
T Consensus 70 ~~~~dGvL~I~lPk~ 84 (84)
T cd06498 70 SLSPDGVLTVCGPRK 84 (84)
T ss_pred EeCCCCEEEEEEeCC
Confidence 995 99999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.89 E-value=6.2e-23 Score=134.32 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=70.7
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCee
Q 031515 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKIS 130 (158)
Q Consensus 51 ~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
+|.|++++|.|.++|||++|++|+|++.+ +.|+|+|++.... + ..+|+|+|+|.||.+||+++|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~--------~------~~~g~F~R~~~LP~~vd~e~v~ 66 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASD--------G------TVMNTFTHKCQLPEDVDPTSVS 66 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccC--------C------CEEEEEEEEEECCCCcCHHHeE
Confidence 68899999999999999999999999994 8999999975332 1 1368899999999999999999
Q ss_pred EEE-eCCEEEEEEec
Q 031515 131 ALC-QDGVLIVTVEK 144 (158)
Q Consensus 131 A~~-~nGvL~I~~pk 144 (158)
|+| +||+|+|++++
T Consensus 67 A~l~~~GvL~I~~~~ 81 (81)
T cd06479 67 SSLGEDGTLTIKARR 81 (81)
T ss_pred EEecCCCEEEEEecC
Confidence 997 99999999985
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.88 E-value=3.5e-22 Score=131.48 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=69.3
Q ss_pred EEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeE
Q 031515 52 VVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISA 131 (158)
Q Consensus 52 i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 131 (158)
+..++++|.|.++|||+++++|+|++.+ +.|+|+|++.... +...+.++ .|+|+|.||.+||.++|+|
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~------~~~~~~~~-----eF~R~~~LP~~vd~~~v~A 69 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRM------DRHGFVSR-----EFTRTYILPMDVDPLLVRA 69 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccee------cCCCEEEE-----EEEEEEECCCCCChhhEEE
Confidence 3456889999999999999999999995 7999999975432 23345544 4999999999999999999
Q ss_pred EEe-CCEEEEEEec
Q 031515 132 LCQ-DGVLIVTVEK 144 (158)
Q Consensus 132 ~~~-nGvL~I~~pk 144 (158)
.|. ||+|+|++||
T Consensus 70 ~~~~dGvL~I~~Pr 83 (83)
T cd06476 70 SLSHDGILCIQAPR 83 (83)
T ss_pred EecCCCEEEEEecC
Confidence 996 9999999997
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.88 E-value=6.2e-22 Score=131.19 Aligned_cols=82 Identities=20% Similarity=0.423 Sum_probs=71.5
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCe
Q 031515 50 ADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKI 129 (158)
Q Consensus 50 ~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i 129 (158)
.+|+|++++|.|.++|||+++++|+|++. ++.|+|+|++.... +...+. .++|+|+|.||.+||.++|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~------~~~~~~-----~~~f~R~f~LP~~vd~~~v 70 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTK-DGVVEITGKHEEKQ------DEHGFV-----SRCFTRKYTLPPGVDPTAV 70 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEE-CCEEEEEEEECcCc------CCCCEE-----EEEEEEEEECCCCCCHHHc
Confidence 48999999999999999999999999999 48999999875433 223343 3479999999999999999
Q ss_pred eEEEe-CCEEEEEEe
Q 031515 130 SALCQ-DGVLIVTVE 143 (158)
Q Consensus 130 ~A~~~-nGvL~I~~p 143 (158)
+|.|+ ||+|+|++|
T Consensus 71 ~A~~~~dGvL~I~lP 85 (86)
T cd06475 71 TSSLSPDGILTVEAP 85 (86)
T ss_pred EEEECCCCeEEEEec
Confidence 99997 999999998
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.87 E-value=6.8e-22 Score=131.25 Aligned_cols=83 Identities=19% Similarity=0.455 Sum_probs=71.4
Q ss_pred EeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEE
Q 031515 54 EYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALC 133 (158)
Q Consensus 54 e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~ 133 (158)
+..+.|.|.++|||+++++|+|++. ++.|+|+|++.... ......|. +.+|.|.|+|.||++||.+.|+|.|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~----~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~ 75 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVD-GRKLVVTGKREKKN----EDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSL 75 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEE-CCEEEEEEEEeeec----ccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEe
Confidence 4567999999999999999999999 58999999987654 23334444 3478999999999999999999999
Q ss_pred -eCCEEEEEEec
Q 031515 134 -QDGVLIVTVEK 144 (158)
Q Consensus 134 -~nGvL~I~~pk 144 (158)
+||+|+|++|+
T Consensus 76 ~~dGvL~I~~P~ 87 (87)
T cd06481 76 SPSGHLHIRAPR 87 (87)
T ss_pred CCCceEEEEcCC
Confidence 99999999995
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=3.8e-21 Score=126.70 Aligned_cols=88 Identities=43% Similarity=0.787 Sum_probs=80.2
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCee
Q 031515 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKIS 130 (158)
Q Consensus 51 ~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
++.++++.|.|.++|||+++++|+|++. ++.|.|+|++.... ... ..+...++..+.|.|+|.||..+|.++++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~-~~~l~I~g~~~~~~----~~~-~~~~~~~~~~~~f~r~~~LP~~vd~~~i~ 74 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVE-DGVLTISGEREEEE----EEE-ENYLRRERSYGSFSRSFRLPEDVDPDKIK 74 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEeccc----ccC-CcEEEEEEeCcEEEEEEECCCCcCHHHcE
Confidence 4688999999999999999999999999 58999999999776 222 37788899999999999999999999999
Q ss_pred EEEeCCEEEEEEec
Q 031515 131 ALCQDGVLIVTVEK 144 (158)
Q Consensus 131 A~~~nGvL~I~~pk 144 (158)
|.|+||+|+|++||
T Consensus 75 a~~~~G~L~I~~pk 88 (88)
T cd06464 75 ASLENGVLTITLPK 88 (88)
T ss_pred EEEeCCEEEEEEcC
Confidence 99999999999997
No 16
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.86 E-value=4.9e-21 Score=125.86 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=67.2
Q ss_pred EeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEE
Q 031515 54 EYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALC 133 (158)
Q Consensus 54 e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~ 133 (158)
+++++|.|+++|||+++++|+|++.+ +.|+|+|++.... ++..+.. ++|+|+|.||.+|+.++|+|+|
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~------~~~~~~~-----r~F~R~~~LP~~Vd~~~v~A~~ 71 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRM------DEHGFIS-----RSFTRQYQLPDGVEHKDLSAML 71 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcccc------CCCCEEE-----EEEEEEEECCCCcchheEEEEE
Confidence 56789999999999999999999994 8999999987643 1233432 3799999999999999999998
Q ss_pred -eCCEEEEEEe
Q 031515 134 -QDGVLIVTVE 143 (158)
Q Consensus 134 -~nGvL~I~~p 143 (158)
+||+|+|+.|
T Consensus 72 ~~dGvL~I~~~ 82 (83)
T cd06477 72 CHDGILVVETK 82 (83)
T ss_pred cCCCEEEEEec
Confidence 8999999986
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.86 E-value=3.8e-21 Score=127.39 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=69.2
Q ss_pred eCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEEe
Q 031515 55 YPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQ 134 (158)
Q Consensus 55 ~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 134 (158)
+++.|+|.++|||+++++|+|++.+ +.|+|+|++.... +..+ ..|+.+|+|.|+|.||.+||.++|+|+|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~----e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~ 76 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRY----DCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYG 76 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccc----ccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEc
Confidence 4679999999999999999999995 8999999987654 2111 23678999999999999999999999998
Q ss_pred CC-EEEEEEe
Q 031515 135 DG-VLIVTVE 143 (158)
Q Consensus 135 nG-vL~I~~p 143 (158)
|| +|+|..|
T Consensus 77 ~~~~l~i~~~ 86 (87)
T cd06482 77 LGSVVKIETP 86 (87)
T ss_pred CCCEEEEeeC
Confidence 66 9999987
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=7.3e-21 Score=125.21 Aligned_cols=78 Identities=27% Similarity=0.522 Sum_probs=67.8
Q ss_pred eCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEEe
Q 031515 55 YPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQ 134 (158)
Q Consensus 55 ~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 134 (158)
+++.|.|.++||||++++|+|++. ++.|+|+|++.... . ...+ ..+.|.|+|.||.+||.++++|+|.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~-~~~L~I~g~~~~~~----~--~~~~-----~~~~f~r~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVS-DNKLVVEGKHEERE----D--EHGY-----VSREFTRRYQLPEGVDPDSVTSSLS 72 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEE-CCEEEEEEEEeeec----c--CCCE-----EEEEEEEEEECCCCCChHHeEEEeC
Confidence 346999999999999999999999 58999999987654 2 2222 3577999999999999999999999
Q ss_pred C-CEEEEEEec
Q 031515 135 D-GVLIVTVEK 144 (158)
Q Consensus 135 n-GvL~I~~pk 144 (158)
| |+|+|++||
T Consensus 73 ~~GvL~I~~Pk 83 (83)
T cd06526 73 SDGVLTIEAPK 83 (83)
T ss_pred CCcEEEEEecC
Confidence 8 999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.6e-19 Score=132.77 Aligned_cols=114 Identities=47% Similarity=0.793 Sum_probs=97.5
Q ss_pred cccCCCCceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECC
Q 031515 42 AKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLP 121 (158)
Q Consensus 42 ~~~~~~p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP 121 (158)
....+.++++|.+..+.|.+.+++||+.+++++|.++++++|+|+|++....++ ......++..|+..|.|.+.+.||
T Consensus 79 ~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~--~~~~~~~~~~E~~~g~F~r~~~lP 156 (196)
T KOG0710|consen 79 AKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEE--SGSGKKWKRVERKLGKFKRRFELP 156 (196)
T ss_pred ccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEeccccccccc--ccCCccceeehhcccceEeeecCC
Confidence 445566788999999999999999999999999999976689999999887721 235677888899999999999999
Q ss_pred CCcccCCeeEEEeCCEEEEEEecCCC--CCCceEEEee
Q 031515 122 DNANVEKISALCQDGVLIVTVEKVPP--PQPKTIQVQV 157 (158)
Q Consensus 122 ~~vd~~~i~A~~~nGvL~I~~pk~~~--~~~~~I~I~~ 157 (158)
++++.+.|+|.|+||+|+|++||..+ .+.+...|.+
T Consensus 157 env~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i 194 (196)
T KOG0710|consen 157 ENVDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAI 194 (196)
T ss_pred ccccHHHHHHHhhCCeEEEEEecccccccCCccceeec
Confidence 99999999999999999999999998 3554444443
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.78 E-value=3e-18 Score=114.29 Aligned_cols=83 Identities=19% Similarity=0.329 Sum_probs=70.9
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCe
Q 031515 50 ADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKI 129 (158)
Q Consensus 50 ~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i 129 (158)
--+..++++|.|.+++.||++++|+|++. ++.|+|+|++.... +++.+. .++|.|+|.||.+||.+.|
T Consensus 8 ~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~-~~~L~V~Gkh~~~~------~e~g~~-----~r~F~R~~~LP~~Vd~~~v 75 (91)
T cd06480 8 NPPPNSSEPWKVCVNVHSFKPEELTVKTK-DGFVEVSGKHEEQQ------KEGGIV-----SKNFTKKIQLPPEVDPVTV 75 (91)
T ss_pred CCCCCCCCcEEEEEEeCCCCHHHcEEEEE-CCEEEEEEEECccc------CCCCEE-----EEEEEEEEECCCCCCchhE
Confidence 34566788999999999999999999999 58999999988554 222344 3679999999999999999
Q ss_pred eEEEe-CCEEEEEEec
Q 031515 130 SALCQ-DGVLIVTVEK 144 (158)
Q Consensus 130 ~A~~~-nGvL~I~~pk 144 (158)
+|.+. ||+|+|.+|.
T Consensus 76 ~s~l~~dGvL~IeaP~ 91 (91)
T cd06480 76 FASLSPEGLLIIEAPQ 91 (91)
T ss_pred EEEeCCCCeEEEEcCC
Confidence 99997 9999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.3e-17 Score=121.28 Aligned_cols=98 Identities=28% Similarity=0.555 Sum_probs=85.8
Q ss_pred CceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031515 48 TPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVE 127 (158)
Q Consensus 48 p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
....+..+.++|.|.+|+..|.|++|+|++.| +.|.|+|+..... +++.+.. ++|.|+|.||.+||++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~------d~~G~v~-----R~F~R~y~LP~~vdp~ 130 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKE------DEHGYVS-----RSFVRKYLLPEDVDPT 130 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecccc------CCCCeEE-----EEEEEEecCCCCCChh
Confidence 45788899999999999999999999999994 8999999987665 5566664 4499999999999999
Q ss_pred CeeEEEe-CCEEEEEEecCCCCC--CceEEEee
Q 031515 128 KISALCQ-DGVLIVTVEKVPPPQ--PKTIQVQV 157 (158)
Q Consensus 128 ~i~A~~~-nGvL~I~~pk~~~~~--~~~I~I~~ 157 (158)
.|++.+. ||+|+|++||.+..+ .|.|+|+.
T Consensus 131 ~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~~ 163 (173)
T KOG3591|consen 131 SVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQ 163 (173)
T ss_pred heEEeeCCCceEEEEccCCCCcCccceEEeEee
Confidence 9999995 999999999999775 58888874
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.60 E-value=1.4e-14 Score=92.36 Aligned_cols=80 Identities=41% Similarity=0.709 Sum_probs=70.7
Q ss_pred EEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeE
Q 031515 52 VVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISA 131 (158)
Q Consensus 52 i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 131 (158)
+.++++.|.|++++||+.+++++|.+. ++.|.|+|...... . .+...+.|.+.+.||..+++++++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~-~~~l~v~~~~~~~~----~--------~~~~~~~~~~~~~L~~~i~~~~~~~ 67 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVE-DNVLTISGKREEEE----E--------RERSYGEFERSFELPEDVDPEKSKA 67 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcCCC----c--------ceEeeeeEEEEEECCCCcCHHHCEE
Confidence 367889999999999999999999999 58999999977554 1 3344677999999999999999999
Q ss_pred EEeCCEEEEEEec
Q 031515 132 LCQDGVLIVTVEK 144 (158)
Q Consensus 132 ~~~nGvL~I~~pk 144 (158)
.+.+|+|+|.+||
T Consensus 68 ~~~~~~l~i~l~K 80 (80)
T cd00298 68 SLENGVLEITLPK 80 (80)
T ss_pred EEECCEEEEEEcC
Confidence 9999999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.40 E-value=3.9e-12 Score=82.19 Aligned_cols=70 Identities=26% Similarity=0.334 Sum_probs=63.7
Q ss_pred EEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEE
Q 031515 53 VEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISAL 132 (158)
Q Consensus 53 ~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~ 132 (158)
.++++.+.|++++||+.+++++|.+++ +.|.|+| .. |.+.+.||..|++++.+|.
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~----~~--------------------~~~~~~l~~~I~~e~~~~~ 56 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF----PP--------------------YLFELDLAAPIDDEKSSAK 56 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEec-CEEEEcC----CC--------------------EEEEEeCcccccccccEEE
Confidence 578899999999999999999999995 7899886 12 7889999999999999999
Q ss_pred EeCCEEEEEEecCCC
Q 031515 133 CQDGVLIVTVEKVPP 147 (158)
Q Consensus 133 ~~nGvL~I~~pk~~~ 147 (158)
+.+|.|.|+++|.++
T Consensus 57 ~~~~~l~i~L~K~~~ 71 (78)
T cd06469 57 IGNGVLVFTLVKKEP 71 (78)
T ss_pred EeCCEEEEEEEeCCC
Confidence 999999999999875
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.12 E-value=1e-09 Score=70.94 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=65.6
Q ss_pred EEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEE
Q 031515 53 VEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISAL 132 (158)
Q Consensus 53 ~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~ 132 (158)
.++++.+.|.+.+||..++++.|.+.+ +.|.|++.... .+.|...+.|+..|+++..+++
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~~~ 61 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG-------------------GKEYLLEGELFGPIDPEESKWT 61 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC-------------------CCceEEeeEccCccchhhcEEE
Confidence 567899999999999999999999994 89999987331 1237788999999999999999
Q ss_pred EeCCEEEEEEecCCC
Q 031515 133 CQDGVLIVTVEKVPP 147 (158)
Q Consensus 133 ~~nGvL~I~~pk~~~ 147 (158)
+.+|.|.|+++|..+
T Consensus 62 ~~~~~l~i~L~K~~~ 76 (84)
T cd06463 62 VEDRKIEITLKKKEP 76 (84)
T ss_pred EeCCEEEEEEEECCC
Confidence 999999999999876
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.12 E-value=1e-09 Score=80.83 Aligned_cols=79 Identities=24% Similarity=0.457 Sum_probs=62.8
Q ss_pred CCceeEEEeCC-EEEEEEEcCCCCCCC-eEEEEee-CcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCC
Q 031515 47 ATPADVVEYPN-SYVFVVDMPGIKASE-IKVQVES-ENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDN 123 (158)
Q Consensus 47 ~p~~~i~e~~d-~~~i~~~lPG~~~~~-i~v~v~d-~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~ 123 (158)
.+.+++.+.+| .++|.++|||+++++ |+|.+.. ...|+|++. +.+.+++.||..
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-----------------------~~~~krv~L~~~ 147 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-----------------------EKYLKRVALPWP 147 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-----------------------CceEeeEecCCC
Confidence 45788998888 699999999999888 9999993 345555421 115678999976
Q ss_pred cccCCeeEEEeCCEEEEEEecCCCCC
Q 031515 124 ANVEKISALCQDGVLIVTVEKVPPPQ 149 (158)
Q Consensus 124 vd~~~i~A~~~nGvL~I~~pk~~~~~ 149 (158)
+.+.++|.|+||||+|++-+..++.
T Consensus 148 -~~e~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 148 -DPEITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred -ccceeeEEEeCceEEEEEeecCCCC
Confidence 6888899999999999999887654
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.92 E-value=8e-09 Score=67.34 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=66.4
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCee
Q 031515 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKIS 130 (158)
Q Consensus 51 ~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
|++++++.+.|.+.+||+.++++.|.+. ++.|.|++... . ...|...+.|+..|+++..+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~-~~~l~i~~~~~--~-----------------~~~~~~~~~L~~~I~~~~s~ 60 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFN-EQSLSVSIILP--G-----------------GSEYQLELDLFGPIDPEQSK 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEe-cCEEEEEEECC--C-----------------CCeEEEecccccccCchhcE
Confidence 4678899999999999999999999999 48999986632 1 12377788999999999999
Q ss_pred EEEeCCEEEEEEecCCC
Q 031515 131 ALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 131 A~~~nGvL~I~~pk~~~ 147 (158)
+.+.+|.|.|+|.|...
T Consensus 61 ~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 61 VSVLPTKVEITLKKAEP 77 (84)
T ss_pred EEEeCeEEEEEEEcCCC
Confidence 99999999999999875
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.65 E-value=1.3e-06 Score=55.73 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=63.6
Q ss_pred CceeEEEeCCEEEEEEEcCCC--CCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcc
Q 031515 48 TPADVVEYPNSYVFVVDMPGI--KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNAN 125 (158)
Q Consensus 48 p~~~i~e~~d~~~i~~~lPG~--~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd 125 (158)
|++++.++++.+.|.+.+++. .++++.|.+.+ +.|.|+....... .|.-.+.|...|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~~-------------------~~~~~~~L~~~I~ 60 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDGK-------------------EYLLEGELFGEID 60 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTSC-------------------EEEEEEEBSS-BE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCCc-------------------eEEEEEEEeeeEc
Confidence 678999999999999999665 49999999995 8999996533211 2677788999999
Q ss_pred cCCeeEEEeCCEEEEEEec
Q 031515 126 VEKISALCQDGVLIVTVEK 144 (158)
Q Consensus 126 ~~~i~A~~~nGvL~I~~pk 144 (158)
++..++.+.++.|.|+|.|
T Consensus 61 ~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 61 PDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp CCCEEEEEETTEEEEEEEB
T ss_pred chhcEEEEECCEEEEEEEC
Confidence 9999999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.38 E-value=8.1e-06 Score=55.88 Aligned_cols=78 Identities=10% Similarity=0.147 Sum_probs=66.1
Q ss_pred CceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031515 48 TPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVE 127 (158)
Q Consensus 48 p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
|+++++++.+.+.|.+.+||+ +++.|.+.. +.|.|++...... ..|.-.+.|...|+++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~~~------------------~~y~~~~~L~~~I~pe 59 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGGGG------------------KKYEFDLEFYKEIDPE 59 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCCCC------------------eeEEEEeEhhhhcccc
Confidence 578999999999999999998 889999994 8999998532111 1256678999999999
Q ss_pred CeeEEEeCCEEEEEEecCC
Q 031515 128 KISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 128 ~i~A~~~nGvL~I~~pk~~ 146 (158)
..+.++.++.|.|+|.|..
T Consensus 60 ~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 60 ESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred ccEEEecCCeEEEEEEECC
Confidence 9999999999999999987
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.17 E-value=1.2e-05 Score=64.85 Aligned_cols=65 Identities=26% Similarity=0.443 Sum_probs=56.3
Q ss_pred CCEEEEEEEcCCC-CCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEEe
Q 031515 56 PNSYVFVVDMPGI-KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQ 134 (158)
Q Consensus 56 ~d~~~i~~~lPG~-~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 134 (158)
.+.++|++.|||+ +..+|++.|.+ +.|.|..... .|.-.+.||..|+.+..+|.|.
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~----------------------~y~L~l~LP~~V~~~~~~Akf~ 316 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP----------------------KYRLDLPLPYPVDEDNGKAKFD 316 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC----------------------ceEEEccCCCcccCCCceEEEc
Confidence 5789999999999 78899999995 8899884421 2677899999999999999995
Q ss_pred --CCEEEEEEe
Q 031515 135 --DGVLIVTVE 143 (158)
Q Consensus 135 --nGvL~I~~p 143 (158)
.++|+|++|
T Consensus 317 ~~~~~L~vtlp 327 (328)
T PF08190_consen 317 KKTKTLTVTLP 327 (328)
T ss_pred cCCCEEEEEEE
Confidence 789999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.16 E-value=3e-05 Score=50.58 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=64.3
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCee
Q 031515 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKIS 130 (158)
Q Consensus 51 ~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
|++++++...|.+.++|+.++++.|.+.+ +.|.+++...... .|.-.+.|...|++++.+
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~~~-------------------~y~~~~~L~~~I~p~~s~ 60 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPSGN-------------------DYSLKLHLLHPIVPEQSS 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCCCC-------------------cEEEeeecCceecchhcE
Confidence 46788999999999999999999999995 8999997642111 156678999999999888
Q ss_pred EEEeCCEEEEEEecCCCC
Q 031515 131 ALCQDGVLIVTVEKVPPP 148 (158)
Q Consensus 131 A~~~nGvL~I~~pk~~~~ 148 (158)
.....+-+.|.|.|.+..
T Consensus 61 ~~v~~~kiei~L~K~~~~ 78 (84)
T cd06489 61 YKILSTKIEIKLKKTEAI 78 (84)
T ss_pred EEEeCcEEEEEEEcCCCC
Confidence 888888999999998643
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.10 E-value=6.1e-05 Score=48.98 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=61.5
Q ss_pred eeEEEeCCEEEEEEEcC-CCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCC
Q 031515 50 ADVVEYPNSYVFVVDMP-GIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEK 128 (158)
Q Consensus 50 ~~i~e~~d~~~i~~~lP-G~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 128 (158)
+.+.++++...|.+.+| ++.++++.|.+.+ +.|.|+... .. +.-...|...|+++.
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~--~~--------------------~~l~~~L~~~I~~~~ 57 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG--GE--------------------PLLDGELYAKVKVDE 57 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC--CC--------------------ceEcCcccCceeEcC
Confidence 35788999999999998 7899999999995 899998541 11 122346899999999
Q ss_pred eeEEEeC-CEEEEEEecCCC
Q 031515 129 ISALCQD-GVLIVTVEKVPP 147 (158)
Q Consensus 129 i~A~~~n-GvL~I~~pk~~~ 147 (158)
.+..+.+ ..|.|+++|.++
T Consensus 58 s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 58 STWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEEeCCCEEEEEEEECCC
Confidence 8888998 999999999876
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.98 E-value=0.00016 Score=47.77 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=64.0
Q ss_pred ceeEEEeCCEEEEEEEcCCCCC---CCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEE-ECCCCc
Q 031515 49 PADVVEYPNSYVFVVDMPGIKA---SEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKF-VLPDNA 124 (158)
Q Consensus 49 ~~~i~e~~d~~~i~~~lPG~~~---~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~-~LP~~v 124 (158)
.+++.++++...|.+.+|+..+ +++.|.+.. +.|.|++... ++.. |.-.+ .|-..|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~---------~~~~----------~~~~~~~L~~~I 62 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDL---------NGKN----------YRFTINRLLKKI 62 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECC---------CCcE----------EEEEehHhhCcc
Confidence 4688999999999999999876 899999994 8999987421 1111 34445 488999
Q ss_pred ccCCeeEEEeCCEEEEEEecCCC
Q 031515 125 NVEKISALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 125 d~~~i~A~~~nGvL~I~~pk~~~ 147 (158)
+++..+.....+-+.|++.|.++
T Consensus 63 ~~e~s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 63 DPEKSSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred CccccEEEEeCCEEEEEEEeCCC
Confidence 99999999999999999999875
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.93 E-value=0.00029 Score=46.38 Aligned_cols=80 Identities=19% Similarity=0.087 Sum_probs=66.3
Q ss_pred ceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCC
Q 031515 49 PADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEK 128 (158)
Q Consensus 49 ~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 128 (158)
+++++++++...|.+.+.|+.++++.+.+.+ +.|.++...... ..|.-.+.|-..|+++.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~~-------------------~~y~~~l~L~~~I~~~~ 61 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEGN-------------------KEFQLDIELWGVIDVEK 61 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCCC-------------------ceEEEEeeccceEChhH
Confidence 4689999999999999999999999999994 788887542211 12677789999999999
Q ss_pred eeEEEeCCEEEEEEecCCCC
Q 031515 129 ISALCQDGVLIVTVEKVPPP 148 (158)
Q Consensus 129 i~A~~~nGvL~I~~pk~~~~ 148 (158)
.+.....+-+.|.+.|.++.
T Consensus 62 s~~~v~~~kvei~L~K~~~~ 81 (87)
T cd06488 62 SSVNMLPTKVEIKLRKAEPG 81 (87)
T ss_pred cEEEecCcEEEEEEEeCCCC
Confidence 88888899999999998754
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.92 E-value=0.00029 Score=46.07 Aligned_cols=76 Identities=9% Similarity=0.117 Sum_probs=59.9
Q ss_pred eeEEEeCCEEEEEEEcC-CCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCC
Q 031515 50 ADVVEYPNSYVFVVDMP-GIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEK 128 (158)
Q Consensus 50 ~~i~e~~d~~~i~~~lP-G~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 128 (158)
+++.++.+...|.+.+| |+.+++++|.+.. +.|.|... ... .+ -.-.|...|+++.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~--~~~-------------------~~-~~g~L~~~I~~d~ 57 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALK--DQA-------------------PL-LEGKLYSSIDHES 57 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeC--CCC-------------------eE-EeCcccCcccccC
Confidence 35789999999999996 9999999999995 88988742 011 02 2347889999998
Q ss_pred eeEEEeCC-EEEEEEecCCCC
Q 031515 129 ISALCQDG-VLIVTVEKVPPP 148 (158)
Q Consensus 129 i~A~~~nG-vL~I~~pk~~~~ 148 (158)
-+-...+| .|.|.+.|.++.
T Consensus 58 Stw~i~~~~~l~i~L~K~~~~ 78 (85)
T cd06493 58 STWIIKENKSLEVSLIKKDEG 78 (85)
T ss_pred cEEEEeCCCEEEEEEEECCCC
Confidence 88888766 799999998754
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.56 E-value=0.0024 Score=43.70 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=62.0
Q ss_pred CceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031515 48 TPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVE 127 (158)
Q Consensus 48 p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
|++.+.++.+.+.|++.+|+ .++++|.+++ +.|.++|.-. . +.. |.-.+.|=..|+++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~--~-------g~~----------y~~~l~l~~~I~pe 59 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG--D-------NVK----------IYNEIELYDRVDPN 59 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC--C-------CcE----------EEEEEEeecccCcc
Confidence 78899999999999999999 5899999995 7999998422 1 111 44567888899999
Q ss_pred CeeEEEeCCEEEEEEecCCCC
Q 031515 128 KISALCQDGVLIVTVEKVPPP 148 (158)
Q Consensus 128 ~i~A~~~nGvL~I~~pk~~~~ 148 (158)
+.+.....--+.|.+.|++..
T Consensus 60 ~Sk~~v~~r~ve~~L~K~~~~ 80 (106)
T cd00237 60 DSKHKRTDRSILCCLRKGKEG 80 (106)
T ss_pred cCeEEeCCceEEEEEEeCCCC
Confidence 777666666788899998643
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.54 E-value=0.0015 Score=43.61 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=62.0
Q ss_pred CCceeEEEeCCEEEEEEEcC-CCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcc
Q 031515 47 ATPADVVEYPNSYVFVVDMP-GIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNAN 125 (158)
Q Consensus 47 ~p~~~i~e~~d~~~i~~~lP-G~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd 125 (158)
.+.+.+.++.+...|.+.+| |..++|+.|.+.. +.|.|... . ..+ +. =.|...|+
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~----g--------~~~---------l~--G~L~~~I~ 60 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVK----G--------QEV---------LK--GKLFDSVV 60 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEEC----C--------EEE---------Ec--CcccCccC
Confidence 46789999999999999998 8999999999995 89998842 0 001 11 16788999
Q ss_pred cCCeeEEEeCCE-EEEEEecCCCC
Q 031515 126 VEKISALCQDGV-LIVTVEKVPPP 148 (158)
Q Consensus 126 ~~~i~A~~~nGv-L~I~~pk~~~~ 148 (158)
++.-.-++++|- |.|.|.|....
T Consensus 61 ~destWtled~k~l~I~L~K~~~~ 84 (93)
T cd06494 61 ADECTWTLEDRKLIRIVLTKSNRD 84 (93)
T ss_pred cccCEEEEECCcEEEEEEEeCCCC
Confidence 999888898775 89999998643
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.95 E-value=0.0083 Score=49.32 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=66.5
Q ss_pred CceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031515 48 TPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVE 127 (158)
Q Consensus 48 p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
++.+++++++.+.|.+.+.|+.++++.|.+.+ +.|.|+...... ..|...+.|-..|+++
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~~-------------------~~y~~~~~L~~~I~p~ 216 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPGE-------------------DAYHLQPRLFGKIIPD 216 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCCC-------------------cceeeccccccccccc
Confidence 57899999999999999999999999999995 788888643211 1155568899999999
Q ss_pred CeeEEEeCCEEEEEEecCCC
Q 031515 128 KISALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 128 ~i~A~~~nGvL~I~~pk~~~ 147 (158)
..+......-+.|+|.|...
T Consensus 217 ~s~~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 217 KCKYEVLSTKIEIRLAKAEP 236 (356)
T ss_pred ccEEEEecceEEEEEecCCC
Confidence 88888887899999999865
No 38
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.93 E-value=0.028 Score=36.89 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=55.6
Q ss_pred eeEEEeCCEEEEEEEcCCC--CCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031515 50 ADVVEYPNSYVFVVDMPGI--KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVE 127 (158)
Q Consensus 50 ~~i~e~~d~~~i~~~lPG~--~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
.|++++++...|.+...+. ...++.+.... +.|.|+-..... .|...+.|=..|+++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~~~--------------------~~~~~~~L~~~I~~~ 59 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILGDK--------------------SYLLHLDLSNEVQWP 59 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECCCc--------------------eEEEeeeccccCCCC
Confidence 3789999999999999864 44455555553 578887543311 167778888899877
Q ss_pred CeeEEEe--CCEEEEEEecCCCC
Q 031515 128 KISALCQ--DGVLIVTVEKVPPP 148 (158)
Q Consensus 128 ~i~A~~~--nGvL~I~~pk~~~~ 148 (158)
. +..+. -|-++|+|.|.++.
T Consensus 60 ~-~~~~~~~~~KVEI~L~K~e~~ 81 (87)
T cd06490 60 C-EVRISTETGKIELVLKKKEPE 81 (87)
T ss_pred c-EEEEcccCceEEEEEEcCCCC
Confidence 5 55554 78999999998754
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.83 E-value=0.017 Score=37.94 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=56.0
Q ss_pred eEEEeCCEEEEEEEcC-C--CCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031515 51 DVVEYPNSYVFVVDMP-G--IKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVE 127 (158)
Q Consensus 51 ~i~e~~d~~~i~~~lP-G--~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
.+.++.+...|++.+| | .++.+++|.+.. +.|.|.-+.. . . + -.=.|...|+++
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~-~-----------~---------~-i~G~L~~~V~~d 58 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ-P-----------P---------I-IDGELYNEVKVE 58 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC-c-----------e---------E-EeCcccCccccc
Confidence 4567888999999996 4 789999999995 7888863210 0 0 1 123678889999
Q ss_pred CeeEEEeCC-EEEEEEecCCC
Q 031515 128 KISALCQDG-VLIVTVEKVPP 147 (158)
Q Consensus 128 ~i~A~~~nG-vL~I~~pk~~~ 147 (158)
.-.-.+++| .|.|.+-|...
T Consensus 59 es~Wtled~~~l~i~L~K~~~ 79 (87)
T cd06492 59 ESSWLIEDGKVVTVNLEKINK 79 (87)
T ss_pred ccEEEEeCCCEEEEEEEECCC
Confidence 888889886 89999999864
No 40
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.79 E-value=0.0077 Score=44.77 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=63.7
Q ss_pred CCceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCccc
Q 031515 47 ATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANV 126 (158)
Q Consensus 47 ~p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~ 126 (158)
.++.|++++....+|.+-.+++.++|++|.+.+ +.|.+..+..... .|.-...|-..|.+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g~-------------------~~~l~~~L~~~I~p 62 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSGS-------------------EYNLQLKLYHEIIP 62 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCch-------------------hhhhhHHhcccccc
Confidence 467899999999999999999999999999995 8888886654222 14445557788888
Q ss_pred CCeeEEEeCCEEEEEEecCCC
Q 031515 127 EKISALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 127 ~~i~A~~~nGvL~I~~pk~~~ 147 (158)
+..+-..----++|+|+|...
T Consensus 63 e~~s~k~~stKVEI~L~K~~~ 83 (196)
T KOG1309|consen 63 EKSSFKVFSTKVEITLAKAEI 83 (196)
T ss_pred cceeeEeeeeeEEEEeccccc
Confidence 876666667788999988543
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.33 E-value=0.12 Score=35.16 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=60.4
Q ss_pred CCceeEEEeCCEEEEEEEcC-CC-CCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCc
Q 031515 47 ATPADVVEYPNSYVFVVDMP-GI-KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNA 124 (158)
Q Consensus 47 ~p~~~i~e~~d~~~i~~~lP-G~-~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~v 124 (158)
...+.+.++.+...|++.|| |. +..++.|.+.. +.|.|.-...... ..+ +.- .|+..|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~~~--------~~~---------i~G--~L~~~V 63 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGGGE--------KVL---------MEG--EFTHKI 63 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCCCC--------ceE---------EeC--cccCcc
Confidence 45688999999999999999 64 57899999994 8898875411010 011 111 578889
Q ss_pred ccCCeeEEEeCC-EEEEEEecCCC
Q 031515 125 NVEKISALCQDG-VLIVTVEKVPP 147 (158)
Q Consensus 125 d~~~i~A~~~nG-vL~I~~pk~~~ 147 (158)
+.+.-.-.+++| .|.|.|-|...
T Consensus 64 ~~des~Wtled~~~l~I~L~K~~~ 87 (102)
T cd06495 64 NTENSLWSLEPGKCVLLSLSKCSE 87 (102)
T ss_pred cCccceEEEeCCCEEEEEEEECCC
Confidence 999888889886 58999999753
No 42
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=88.85 E-value=2.7 Score=31.20 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCCceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCc
Q 031515 45 MAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNA 124 (158)
Q Consensus 45 ~~~p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~v 124 (158)
...|.+.+.+..+.+++++.++- ..+..|.++ +.+|+++|+..... + .|...|.|=..|
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e-~~~l~fs~k~~~d~----------~--------~~~~~ief~~eI 63 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVED--AKDVHVNLE-PSKLTFSCKSGADN----------H--------KYENEIEFFDEI 63 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEecc--Cccceeecc-ccEEEEEeccCCCc----------e--------eeEEeeehhhhc
Confidence 34578889999999999999885 456677777 47899998854222 1 155678888999
Q ss_pred ccCCeeEEEeCCEEEEEEecCCCC
Q 031515 125 NVEKISALCQDGVLIVTVEKVPPP 148 (158)
Q Consensus 125 d~~~i~A~~~nGvL~I~~pk~~~~ 148 (158)
|+++.+-+-. +.+...++++...
T Consensus 64 dpe~sk~k~~-~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 64 DPEKSKHKRT-SRSIFCILRKKEL 86 (180)
T ss_pred CHhhcccccc-ceEEEEEEEcccc
Confidence 9998776655 7777777766554
No 43
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=88.17 E-value=6.9 Score=27.84 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=50.8
Q ss_pred CceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031515 48 TPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVE 127 (158)
Q Consensus 48 p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
..+.|...++ ..+++.. ..+.++++.+ |+.|.|+.+..... -...+..... ...-.-.+.||.....+
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~-~~~L~I~~~~~~~~------~~~~~~~~~~-~~~~~i~I~lP~~~~l~ 133 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVE-GGTLTIKSKDRESF------FFKGFNFNNS-DNKSKITIYLPKDYKLD 133 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEc-CCEEEEEEeccccc------ccceEEEccc-CCCcEEEEEECCCCcee
Confidence 3455655443 4445554 2126888888 58999997722211 1112222111 23456789999999888
Q ss_pred CeeEEEeCCEEEEE
Q 031515 128 KISALCQDGVLIVT 141 (158)
Q Consensus 128 ~i~A~~~nGvL~I~ 141 (158)
+++....+|-+.|.
T Consensus 134 ~i~i~~~~G~i~i~ 147 (166)
T PF13349_consen 134 KIDIKTSSGDITIE 147 (166)
T ss_pred EEEEEeccccEEEE
Confidence 99999999988875
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=85.18 E-value=2.2 Score=27.94 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=29.7
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEecCCC
Q 031515 113 KFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~~ 147 (158)
.|.-...|| +++++.|+..+.+|.|+|..-+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 377789999 7999999999999999999987653
No 45
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=84.22 E-value=11 Score=28.07 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=58.6
Q ss_pred cCCCCceeEEEeCCEEEEEEEcC-CC-CCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECC
Q 031515 44 AMAATPADVVEYPNSYVFVVDMP-GI-KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLP 121 (158)
Q Consensus 44 ~~~~p~~~i~e~~d~~~i~~~lP-G~-~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP 121 (158)
+...+.+.+..+=..+.|.+.+| |+ +..+|.|.+.. +.|.|.-+.... +. .=.|.
T Consensus 15 g~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~~-----------il-----------dG~L~ 71 (179)
T KOG2265|consen 15 GADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQPP-----------IL-----------DGELS 71 (179)
T ss_pred CccccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCCc-----------ee-----------cCccc
Confidence 34456788888888999999887 88 88899999994 788777332211 11 12466
Q ss_pred CCcccCCeeEEEeCCEEEEEEecCCC
Q 031515 122 DNANVEKISALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 122 ~~vd~~~i~A~~~nGvL~I~~pk~~~ 147 (158)
..|+.+....++++|.+.|.+-++..
T Consensus 72 ~~vk~des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 72 HSVKVDESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred cccccccceEEecCCEEEEEEeeccc
Confidence 67888888999999987777766544
No 46
>PF14913 DPCD: DPCD protein family
Probab=83.80 E-value=13 Score=28.06 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=53.4
Q ss_pred CceeEEEeCCEEEEEE-EcCCCCCCCeEEEEee-CcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCC---
Q 031515 48 TPADVVEYPNSYVFVV-DMPGIKASEIKVQVES-ENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPD--- 122 (158)
Q Consensus 48 p~~~i~e~~d~~~i~~-~lPG~~~~~i~v~v~d-~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~--- 122 (158)
|-+-=.++...|.-++ .||. .++-.+|++++ .+.++|+... .+ |.+.|.+|+
T Consensus 87 P~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTtN------------KK----------YyKk~~IPDl~R 143 (194)
T PF14913_consen 87 PIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTTN------------KK----------YYKKFSIPDLDR 143 (194)
T ss_pred CEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECcC------------cc----------ceeEecCCcHHh
Confidence 3333456677888888 6775 67778888884 2468887331 11 556788884
Q ss_pred ---CcccCCeeEEEeCCEEEEEEecCC
Q 031515 123 ---NANVEKISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 123 ---~vd~~~i~A~~~nGvL~I~~pk~~ 146 (158)
..+.+.++..+.|..|.|+..|..
T Consensus 144 ~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 144 CGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred hCCCcchhhceeeeecCeEEEEecCcH
Confidence 246777899999999999998864
No 47
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=82.88 E-value=3.7 Score=26.78 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=30.8
Q ss_pred ceEEEEEECCCCcccCCeeEEEeCCEEEEEEecCCCC
Q 031515 112 GKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPP 148 (158)
Q Consensus 112 ~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~~~ 148 (158)
..|.-.+.|| ++..+.|+..+.+|.|+|...+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 3578899999 69999999999999999998776554
No 48
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=81.29 E-value=4.6 Score=26.12 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=28.8
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEecCC
Q 031515 113 KFMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~ 146 (158)
.|.-.+.|| ++.++.|+..+.||.|+|..-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477889999 689999999999999999997654
No 49
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=80.34 E-value=5.3 Score=25.91 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=28.9
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEecCC
Q 031515 113 KFMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~ 146 (158)
.|.-.+.|| +++++.|+....+|.|+|..-+.+
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHSE 43 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 478889999 699999999999999999987543
No 50
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=80.19 E-value=5.7 Score=25.55 Aligned_cols=33 Identities=9% Similarity=0.102 Sum_probs=28.9
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEecCC
Q 031515 113 KFMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~ 146 (158)
.|.-.+.|| +++++.|+..+.+|.|+|..-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHEE 40 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEce
Confidence 478889999 799999999999999999996643
No 51
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=79.83 E-value=5.3 Score=25.94 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=29.0
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEecCC
Q 031515 113 KFMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~ 146 (158)
.|.-.+.|| +++.+.|+..+.++.|+|..-+..
T Consensus 11 ~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 11 EYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477789999 699999999999999999887764
No 52
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=79.81 E-value=4.8 Score=26.09 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=29.2
Q ss_pred EEEEEECCCCcccCCeeEEEeCCEEEEEEecCCC
Q 031515 114 FMRKFVLPDNANVEKISALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~~ 147 (158)
|.-.+.|| +++++.|+-.+++|.|+|+.-+...
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~~ 41 (83)
T cd06477 9 FQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGVR 41 (83)
T ss_pred EEEEEEcC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 77789999 6999999999999999999977653
No 53
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=77.95 E-value=17 Score=28.82 Aligned_cols=86 Identities=16% Similarity=0.067 Sum_probs=68.4
Q ss_pred CCCceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcc
Q 031515 46 AATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNAN 125 (158)
Q Consensus 46 ~~p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd 125 (158)
..-+.|+..++..++|.+..-|.-++.-.|..+ +-.|.|.-.-... ...|..-+.|=.-|+
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean-~~~l~V~ivf~~g------------------na~fd~d~kLwgvvn 273 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEAN-GTTLHVSIVFGFG------------------NASFDLDYKLWGVVN 273 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeC-CeEEEEEEEecCC------------------Cceeeccceeeeeec
Confidence 344679999999999999999999998888888 6777777443211 123788888888899
Q ss_pred cCCeeEEEeCCEEEEEEecCCCCCC
Q 031515 126 VEKISALCQDGVLIVTVEKVPPPQP 150 (158)
Q Consensus 126 ~~~i~A~~~nGvL~I~~pk~~~~~~ 150 (158)
.++.++.+-.--.+|.|+|.++...
T Consensus 274 ve~s~v~m~~tkVEIsl~k~ep~sW 298 (320)
T KOG1667|consen 274 VEESSVVMGETKVEISLKKAEPGSW 298 (320)
T ss_pred hhhceEEeecceEEEEEeccCCCCc
Confidence 9999999999999999999987543
No 54
>PRK10743 heat shock protein IbpA; Provisional
Probab=77.81 E-value=6.4 Score=28.01 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=27.6
Q ss_pred EEEEEECCCCcccCCeeEEEeCCEEEEEEecCCC
Q 031515 114 FMRKFVLPDNANVEKISALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~~ 147 (158)
|.-...|| +++.+.|+..+++|+|+|..-+...
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECcc
Confidence 55567889 7999999999999999999876543
No 55
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=75.77 E-value=11 Score=23.01 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=33.9
Q ss_pred CceeEE-EeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEec
Q 031515 48 TPADVV-EYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKR 91 (158)
Q Consensus 48 p~~~i~-e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~ 91 (158)
.++.+. -..+.|.|++..||+..-.-.|.+..|....|......
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~~ 69 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLEP 69 (71)
T ss_pred CcceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEEE
Confidence 345665 45679999999999999888888886677888776543
No 56
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=75.51 E-value=6.9 Score=24.93 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=30.2
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEecCCC
Q 031515 113 KFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~~ 147 (158)
.|.-.+.|| ++.++.|+..++++.|+|...+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 488899999 5999999999999999999987764
No 57
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=75.05 E-value=8.4 Score=24.80 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=29.0
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEecCC
Q 031515 113 KFMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~ 146 (158)
.|.-.+.|| +++++.|+....+|.|+|..-+..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 377789999 799999999999999999987754
No 58
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=74.24 E-value=8.6 Score=24.96 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=28.3
Q ss_pred EEEEEECCCCcccCCeeEEEeCCEEEEEEecCC
Q 031515 114 FMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~ 146 (158)
|.-.+.|| ++.++.|+..++++.|+|..-+..
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 9 FSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred EEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 77789999 688999999999999999997654
No 59
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=73.92 E-value=12 Score=24.27 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=29.3
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEecCC
Q 031515 113 KFMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~ 146 (158)
.|.-.+.|| +++++.|+..+.++.|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 488889999 799999999999999999997754
No 60
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=73.44 E-value=2.1 Score=34.37 Aligned_cols=81 Identities=16% Similarity=0.075 Sum_probs=61.3
Q ss_pred ceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCC
Q 031515 49 PADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEK 128 (158)
Q Consensus 49 ~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 128 (158)
.++..++.+...|-+.-|-+..++|++.++ ||.|.|+-+.+... - -|.-.++|-+.|+++.
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e-~NTL~I~~q~~~~~---------~---------~~~~~~~Ly~ev~P~~ 238 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLE-GNTLSISYQPRRLR---------L---------WNDITISLYKEVYPDI 238 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeec-CCcceeeeeccccc---------h---------HHHhhhhhhhhcCcch
Confidence 566778888888888889999999999999 79999996644322 1 1455677888888887
Q ss_pred eeEEEeCCEEEEEEecCCCC
Q 031515 129 ISALCQDGVLIVTVEKVPPP 148 (158)
Q Consensus 129 i~A~~~nGvL~I~~pk~~~~ 148 (158)
.+-..--..+.|.+-|....
T Consensus 239 ~s~k~fsK~~e~~l~KV~~v 258 (368)
T COG5091 239 RSIKSFSKRVEVHLRKVEMV 258 (368)
T ss_pred hhhhhcchhheehhhhhhhh
Confidence 76555557888888777643
No 61
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=73.26 E-value=11 Score=24.33 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=28.6
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEecCC
Q 031515 113 KFMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~ 146 (158)
.|.-.+.|| +++++.|+....+|.|+|..-+..
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHEE 40 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 478889998 699999999999999999996543
No 62
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=73.04 E-value=12 Score=24.43 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=27.6
Q ss_pred ceEEEEEECCCCcccCCeeEEEeCCEEEEEEecC
Q 031515 112 GKFMRKFVLPDNANVEKISALCQDGVLIVTVEKV 145 (158)
Q Consensus 112 ~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~ 145 (158)
..|.-.+.|| +++.+.|+-.++++.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 3478889999 78999999999999999999887
No 63
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=71.86 E-value=14 Score=23.93 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=27.3
Q ss_pred eEEEEEECCCCcccCCeeEEEeCC-EEEEEEecCC
Q 031515 113 KFMRKFVLPDNANVEKISALCQDG-VLIVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~nG-vL~I~~pk~~ 146 (158)
.|.-.+.|| ++.++.|+..+.+| +|+|..-+..
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred eEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 477789999 58999999999865 9999987653
No 64
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=71.26 E-value=8.1 Score=23.54 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=15.9
Q ss_pred CCeeEEEeCCEEEEEEecCCCCCCceEEEee
Q 031515 127 EKISALCQDGVLIVTVEKVPPPQPKTIQVQV 157 (158)
Q Consensus 127 ~~i~A~~~nGvL~I~~pk~~~~~~~~I~I~~ 157 (158)
..|+|.|+||+|.-.=|-. -.+..++.|.+
T Consensus 3 ~~I~aiYe~GvlkPl~~~~-L~Eg~~V~i~I 32 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVD-LPEGEEVKITI 32 (60)
T ss_dssp --EEEEEETTEEEECS------TTEEEEEEE
T ss_pred ceEEEEEECCEEEECCCCC-CCCCCEEEEEE
Confidence 4589999999998643322 23344455443
No 65
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=70.40 E-value=13 Score=26.65 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=27.1
Q ss_pred EEEEEECCCCcccCCeeEEEeCCEEEEEEecCC
Q 031515 114 FMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~ 146 (158)
|.-...|| +++.+.|+..+++|.|+|..-+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 55668888 789999999999999999997654
No 66
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=69.42 E-value=12 Score=24.73 Aligned_cols=31 Identities=10% Similarity=0.403 Sum_probs=26.5
Q ss_pred CEEEEEEEcC-CCCCCCeEEEEeeCcEEEEEE
Q 031515 57 NSYVFVVDMP-GIKASEIKVQVESENVLVVSG 87 (158)
Q Consensus 57 d~~~i~~~lP-G~~~~~i~v~v~d~~~L~I~g 87 (158)
..|.=++.|| +++.+.|+-.+...+.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 5788889999 899999999999335999986
No 67
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=66.86 E-value=27 Score=26.32 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=56.7
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEE-ECCCCcccCC
Q 031515 50 ADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKF-VLPDNANVEK 128 (158)
Q Consensus 50 ~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~-~LP~~vd~~~ 128 (158)
+.+-++++...+.+.|-|++.+++.|.+. .+.|-+...--+. .. |+-.+ .|-..|++++
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ft-p~Sldl~v~dlqG---------K~----------y~~~vnnLlk~I~vEk 136 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFT-PMSLDLKVHDLQG---------KN----------YRMIVNNLLKPISVEK 136 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEec-ccceeeeeeecCC---------cc----------eeeehhhhccccChhh
Confidence 45667888899999999999999999999 5888777542221 12 32222 3556788888
Q ss_pred eeEEEeCCEEEEEEecCCCC
Q 031515 129 ISALCQDGVLIVTVEKVPPP 148 (158)
Q Consensus 129 i~A~~~nGvL~I~~pk~~~~ 148 (158)
-+-..+-....|.+.|.+..
T Consensus 137 s~~kvKtd~v~I~~kkVe~~ 156 (224)
T KOG3260|consen 137 SSKKVKTDTVLILCKKVENT 156 (224)
T ss_pred cccccccceEEEeehhhhcc
Confidence 77778877888888666543
No 68
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=66.82 E-value=17 Score=22.65 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=29.9
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEecCCC
Q 031515 113 KFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~~ 147 (158)
.|.-.+.||. ++++.|+..+.++.|.|...+...
T Consensus 8 ~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~~ 41 (88)
T cd06464 8 AYVVEADLPG-FKKEDIKVEVEDGVLTISGEREEE 41 (88)
T ss_pred EEEEEEECCC-CCHHHeEEEEECCEEEEEEEEecc
Confidence 4778899995 999999999999999999888754
No 69
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=61.26 E-value=53 Score=24.52 Aligned_cols=46 Identities=26% Similarity=0.552 Sum_probs=30.9
Q ss_pred CCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031515 69 KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVE 143 (158)
Q Consensus 69 ~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 143 (158)
=|++++|++. ++.++|+|.+ |...+.|.-| .++...+||.|.|...
T Consensus 12 IP~~V~v~i~-~~~v~VkGp~----------------------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEIE-GLVVTVKGPK----------------------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEEE-CCEEEEECCC----------------------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 3688999999 5899999763 3344433321 3566678888887754
No 70
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=61.16 E-value=33 Score=22.86 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=31.0
Q ss_pred cCCCCceeEEEeCCEEEEEEEcCCC-----CCCCeEEEEeeCcEEEEE
Q 031515 44 AMAATPADVVEYPNSYVFVVDMPGI-----KASEIKVQVESENVLVVS 86 (158)
Q Consensus 44 ~~~~p~~~i~e~~d~~~i~~~lPG~-----~~~~i~v~v~d~~~L~I~ 86 (158)
-...|.+.|+++++.|.|.+--+.- .++...|.-++| .+-|.
T Consensus 22 v~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 22 VNGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred cCCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 3346999999999999999876653 666777776754 55554
No 71
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=60.30 E-value=60 Score=23.95 Aligned_cols=45 Identities=22% Similarity=0.476 Sum_probs=30.4
Q ss_pred CCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031515 70 ASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVE 143 (158)
Q Consensus 70 ~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 143 (158)
|++++|++. ++.++|+|.+ |...+.+. |. .++...++|.|.|..+
T Consensus 7 P~~V~v~i~-~~~i~vkGp~----------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIE-GNIVTVKGPK----------------------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEe-CCEEEEECCC----------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 578899999 5899999763 33444442 33 3455678888888754
No 72
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=59.47 E-value=14 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=28.4
Q ss_pred EEEEEEcC-CCCCCCeEEEEeeCcEEEEEEEEecCC
Q 031515 59 YVFVVDMP-GIKASEIKVQVESENVLVVSGERKRDP 93 (158)
Q Consensus 59 ~~i~~~lP-G~~~~~i~v~v~d~~~L~I~g~~~~~~ 93 (158)
|.=+.-|| |++++.|.-.++..++|+|+|.+....
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 33356788 999999999999556999999887766
No 73
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=58.91 E-value=36 Score=20.89 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=26.8
Q ss_pred CEEEEEEEcCC-CCCCCeEEEEeeCcEEEEEEEE
Q 031515 57 NSYVFVVDMPG-IKASEIKVQVESENVLVVSGER 89 (158)
Q Consensus 57 d~~~i~~~lPG-~~~~~i~v~v~d~~~L~I~g~~ 89 (158)
+.|.+.++||+ +++++.+.++.+ +.|.|+-.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K 68 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGN-GVLVFTLVK 68 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeC-CEEEEEEEe
Confidence 56899999995 799999999996 689988554
No 74
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=57.40 E-value=26 Score=24.85 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=27.7
Q ss_pred EEEEEECCCCcccCCeeEEEeCCEEEEEEecCC
Q 031515 114 FMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146 (158)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~ 146 (158)
|.-.+.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 52 ~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 52 YRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 55668888 799999999999999999998875
No 75
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=55.97 E-value=67 Score=23.73 Aligned_cols=44 Identities=25% Similarity=0.518 Sum_probs=30.1
Q ss_pred CCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031515 70 ASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVE 143 (158)
Q Consensus 70 ~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 143 (158)
|++++|++. ++.++|+|.+ |...+.| |.. ++...+++.|.|...
T Consensus 11 P~~V~v~~~-~~~v~v~Gp~----------------------G~l~~~l--~~~-----i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTID-GNVVTVKGPK----------------------GELSRTL--HPG-----VTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEe-CCEEEEEcCC----------------------eEEEEEc--CCC-----eEEEEECCEEEEEec
Confidence 678999999 5899999763 3344444 543 455568888887754
No 76
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=55.24 E-value=34 Score=20.17 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=20.0
Q ss_pred CCCCCCCeEEEEeeCcEEEEEEEEecC
Q 031515 66 PGIKASEIKVQVESENVLVVSGERKRD 92 (158)
Q Consensus 66 PG~~~~~i~v~v~d~~~L~I~g~~~~~ 92 (158)
++++..+|.|.+.+ +.+.++|.....
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEEESSC
T ss_pred cccCCCeEEEEEEC-CEEEEEeeCcHH
Confidence 36677789999995 799999998654
No 77
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=54.38 E-value=66 Score=23.86 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=29.4
Q ss_pred CCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031515 70 ASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVE 143 (158)
Q Consensus 70 ~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 143 (158)
|++++|+++ ++.|+|+|.+. ... ..||.. ++...+++.|.|..+
T Consensus 12 P~~V~v~i~-~~~v~vkGp~G----------------------~l~--~~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSID-DQIIKVKGPKG----------------------TLS--RKIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEE-CCEEEEECCCE----------------------EEE--EECCCC-----eEEEEeCCEEEEEcC
Confidence 578899999 58999997633 223 455553 355567887777654
No 78
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=52.54 E-value=73 Score=23.97 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=31.6
Q ss_pred CCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031515 69 KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVE 143 (158)
Q Consensus 69 ~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 143 (158)
=|++++|++. ++.++|+|.+ |...+. ||... ..+....+||.|.|..+
T Consensus 12 IP~~V~V~i~-~~~v~VkGp~----------------------G~L~~~--~~~~~--~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 12 IPEGVTVTVK-SRKVTVTGKY----------------------GELTRS--FRHLP--VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCCEEEEE-CCEEEEECCC----------------------ceEEEE--ecCCC--ceEEEEeCCCEEEEEeC
Confidence 3789999999 5899999762 334443 33211 24566678888877754
No 79
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=52.24 E-value=74 Score=23.54 Aligned_cols=44 Identities=23% Similarity=0.468 Sum_probs=29.9
Q ss_pred CCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031515 70 ASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVE 143 (158)
Q Consensus 70 ~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 143 (158)
|++++|++. ++.++|+|.+ |...+.| |.. ++...+++.|.|...
T Consensus 12 P~~V~v~~~-~~~v~vkGp~----------------------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTIN-GNVVTVKGPK----------------------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEE-CCEEEEECCC----------------------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 578999999 5899999763 3345544 443 345567887777654
No 80
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=51.53 E-value=41 Score=20.70 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEE--EeCCEEEEEEe
Q 031515 70 ASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISAL--CQDGVLIVTVE 143 (158)
Q Consensus 70 ~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~--~~nGvL~I~~p 143 (158)
|+.++|++. ++.+.+.|... ..++.+|..+ +.. .+++.+.+...
T Consensus 2 P~gV~v~~~-~~~i~v~G~~g------------------------~l~~~~~~~v-----~v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIK-GNIITVKGPKG------------------------ELSRPIPPGV-----KVEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEE-TTEEEEESSSS------------------------EEEEEETTTE-----EEEEEEETTSEEEEEE
T ss_pred CCcEEEEEe-CcEEEEECCCE------------------------eEEEECCCCe-----eEEEEcCCCceEEEEC
Confidence 567899999 58888886522 3457777654 444 55776666554
No 81
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=50.66 E-value=38 Score=21.19 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=25.9
Q ss_pred EEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031515 114 FMRKFVLPDNANVEKISALCQDGVLIVTVE 143 (158)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 143 (158)
..-.|.+|..+..+.++..+.+.-|.|.++
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 455788999999999999999888999886
No 82
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=45.16 E-value=48 Score=21.83 Aligned_cols=32 Identities=6% Similarity=0.160 Sum_probs=27.1
Q ss_pred ceEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031515 112 GKFMRKFVLPDNANVEKISALCQDGVLIVTVE 143 (158)
Q Consensus 112 ~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 143 (158)
....-.|+||.++..+.++..+...-|+|.+.
T Consensus 15 ~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~ 46 (93)
T cd06494 15 DEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK 46 (93)
T ss_pred CEEEEEEECCCCCceeeEEEEEEcCEEEEEEC
Confidence 34566788999999999999999999999873
No 83
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=41.13 E-value=13 Score=26.87 Aligned_cols=23 Identities=22% Similarity=0.292 Sum_probs=16.8
Q ss_pred CCcccCCeeEEEeCCEEEEEEec
Q 031515 122 DNANVEKISALCQDGVLIVTVEK 144 (158)
Q Consensus 122 ~~vd~~~i~A~~~nGvL~I~~pk 144 (158)
+.+..+.--+.|.||+|+|.++-
T Consensus 67 e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred hhcCccccccccccceEEEEecC
Confidence 34444555678999999999873
No 84
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=38.04 E-value=99 Score=19.96 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=13.1
Q ss_pred CeeEEEeCCEEEEEEec
Q 031515 128 KISALCQDGVLIVTVEK 144 (158)
Q Consensus 128 ~i~A~~~nGvL~I~~pk 144 (158)
.+++.++||-.++++-.
T Consensus 69 ~l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 69 TLIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEEECCEEEEEEEE
Confidence 35788899988888754
No 85
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=37.96 E-value=36 Score=23.06 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=14.8
Q ss_pred CCeeEEEeCCEEEEEEec
Q 031515 127 EKISALCQDGVLIVTVEK 144 (158)
Q Consensus 127 ~~i~A~~~nGvL~I~~pk 144 (158)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 456788899999999983
No 86
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=37.22 E-value=1.6e+02 Score=22.13 Aligned_cols=18 Identities=22% Similarity=0.626 Sum_probs=15.6
Q ss_pred CCCeEEEEeeCcEEEEEEE
Q 031515 70 ASEIKVQVESENVLVVSGE 88 (158)
Q Consensus 70 ~~~i~v~v~d~~~L~I~g~ 88 (158)
|++++|+++ ++.|+|+|.
T Consensus 12 P~~V~V~i~-~~~ItVkGp 29 (189)
T PTZ00179 12 PEDVTVSVK-DRIVTVKGK 29 (189)
T ss_pred CCCCEEEEe-CCEEEEECC
Confidence 688999999 589999976
No 87
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=37.12 E-value=45 Score=22.64 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.8
Q ss_pred CeeEEEeCCEEEEEEec
Q 031515 128 KISALCQDGVLIVTVEK 144 (158)
Q Consensus 128 ~i~A~~~nGvL~I~~pk 144 (158)
.+.+.+.+|+|+|.++.
T Consensus 31 d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPD 47 (109)
T ss_dssp TEEEEEETTEEEEEETT
T ss_pred ceEEEccCCEEEEEECC
Confidence 57899999999999954
No 88
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=36.00 E-value=1.1e+02 Score=19.03 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=28.5
Q ss_pred CCceeEEEeCCEEEEEEEcC-CCCCCCeEEEE--eeCcEEEEEE
Q 031515 47 ATPADVVEYPNSYVFVVDMP-GIKASEIKVQV--ESENVLVVSG 87 (158)
Q Consensus 47 ~p~~~i~e~~d~~~i~~~lP-G~~~~~i~v~v--~d~~~L~I~g 87 (158)
.-|+.+.+++|.++|.-.|| +..-....|.+ .||+.|.+..
T Consensus 21 ekP~~v~~~~~~WiV~Gtl~~~~~GGv~~I~I~K~dgkVl~v~H 64 (66)
T PF15631_consen 21 EKPYRVTLDGDSWIVEGTLPPGMLGGVFYIEIRKKDGKVLNVTH 64 (66)
T ss_pred cCCeEEecCCCeEEEEeecCCCccCCeEEEEEEccCCeEEEEEe
Confidence 45788999999999999987 54444444444 4666777664
No 89
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=35.21 E-value=36 Score=23.06 Aligned_cols=17 Identities=35% Similarity=0.388 Sum_probs=14.3
Q ss_pred eeEEEeCCEEEEEEecC
Q 031515 129 ISALCQDGVLIVTVEKV 145 (158)
Q Consensus 129 i~A~~~nGvL~I~~pk~ 145 (158)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 67888999999999753
No 90
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=34.99 E-value=1.8e+02 Score=21.71 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=18.0
Q ss_pred CCCCCCCeEEEEeeCcEEEEEEEE
Q 031515 66 PGIKASEIKVQVESENVLVVSGER 89 (158)
Q Consensus 66 PG~~~~~i~v~v~d~~~L~I~g~~ 89 (158)
|=.-|++++|+++ ++.++++|.+
T Consensus 8 ~i~~P~gV~V~i~-~~~v~vkGpk 30 (178)
T COG0097 8 PIVIPAGVTVSIE-GQVVTVKGPK 30 (178)
T ss_pred cEecCCCeEEEEe-ccEEEEECCC
Confidence 3334889999999 6899999763
No 91
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=34.83 E-value=35 Score=22.98 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.1
Q ss_pred CeeEEEeCCEEEEEEec
Q 031515 128 KISALCQDGVLIVTVEK 144 (158)
Q Consensus 128 ~i~A~~~nGvL~I~~pk 144 (158)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 36777889999999974
No 92
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=29.57 E-value=1.2e+02 Score=19.34 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=27.3
Q ss_pred CCceEEEEeeecceEEEEEECCCCcccCC-eeEEEeCCEEE-EEE
Q 031515 100 DGVKYVRMERRFGKFMRKFVLPDNANVEK-ISALCQDGVLI-VTV 142 (158)
Q Consensus 100 ~~~~~~~~e~~~~~f~r~~~LP~~vd~~~-i~A~~~nGvL~-I~~ 142 (158)
..+.|....-...-|.|.|.+|+...+.. ++-.|.+|.+. |.-
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 45666666666667899999999986665 58888877443 543
No 93
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=28.19 E-value=40 Score=22.53 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=12.8
Q ss_pred eEEEeCCEEEEEEecC
Q 031515 130 SALCQDGVLIVTVEKV 145 (158)
Q Consensus 130 ~A~~~nGvL~I~~pk~ 145 (158)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 6678899999999643
No 94
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=26.64 E-value=43 Score=23.71 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=21.2
Q ss_pred EEECCCCcccCCee---EEE--eCCEEEEEEecCCC
Q 031515 117 KFVLPDNANVEKIS---ALC--QDGVLIVTVEKVPP 147 (158)
Q Consensus 117 ~~~LP~~vd~~~i~---A~~--~nGvL~I~~pk~~~ 147 (158)
...+-.++|.++++ -.. +++.|+|++|..+-
T Consensus 45 ~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~i 80 (157)
T PF14014_consen 45 PGTVKAGIDLSKIKEEDIEVDEDGKTITITLPPPEI 80 (157)
T ss_pred EEEEEEEEEhHHCCcceEEEcCCCCEEEEECCCcEE
Confidence 34444556667776 555 78899999998653
No 95
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.46 E-value=1.8e+02 Score=19.38 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=25.7
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEE
Q 031515 50 ADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSG 87 (158)
Q Consensus 50 ~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g 87 (158)
+.+.+.+| .|....||.+ .|.+..++ ..|.|.+
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~-kkL~v~t 58 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPEN-KKLLVNT 58 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEeccc-ceEEEec
Confidence 47777888 7778899975 57788885 6888887
No 96
>PF08126 Propeptide_C25: Propeptide_C25; InterPro: IPR012600 This entry represents a propeptide domain found at the N-terminal end of some peptidases that belong to MEROPS peptidase family C25 (IPR001769 from INTERPRO). Little is known about its fuction.; GO: 0004197 cysteine-type endopeptidase activity
Probab=24.85 E-value=1.4e+02 Score=22.67 Aligned_cols=61 Identities=13% Similarity=0.306 Sum_probs=33.2
Q ss_pred CceeEEE-eCCEE-EEEEEcCCCCCCCeEEEEeeCc--EEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCC
Q 031515 48 TPADVVE-YPNSY-VFVVDMPGIKASEIKVQVESEN--VLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPD 122 (158)
Q Consensus 48 p~~~i~e-~~d~~-~i~~~lPG~~~~~i~v~v~d~~--~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~ 122 (158)
|.+.+.. ++..+ .|.+.|++..-++|+ ..+|. .|.+.|.....+ .+ ....--+++.|.||.
T Consensus 9 ~~v~~l~s~~~s~~~i~~~l~~~~~~~ve--~~~g~~~~I~~~~~~~~~~------~G------~P~LP~~~~~I~vP~ 73 (202)
T PF08126_consen 9 PDVTLLQSNNNSFIQIQFRLPELEIEEVE--TDGGIFQRISIPGGFNLSE------PG------EPELPVVSKSIAVPA 73 (202)
T ss_pred CCceEEEeecCceEEEEEEcCCceEEEEE--ecCceEEEEEcCCCcccCC------CC------CCCCCEEEEEEEccC
Confidence 5566663 44444 699999988776665 34332 233332222111 11 111334899999998
No 97
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=24.73 E-value=1.1e+02 Score=22.19 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=19.4
Q ss_pred EECCCCcccCCeeEEEeCCEEEEEEecC
Q 031515 118 FVLPDNANVEKISALCQDGVLIVTVEKV 145 (158)
Q Consensus 118 ~~LP~~vd~~~i~A~~~nGvL~I~~pk~ 145 (158)
+.=|..|-+.........|-+++++|+.
T Consensus 149 ~~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 149 FENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 3457777777555666788999999873
No 98
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=24.59 E-value=1.9e+02 Score=20.66 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=22.5
Q ss_pred EEEEECCCCcccCCeeEEEeCCEEEEEEecCCC
Q 031515 115 MRKFVLPDNANVEKISALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 115 ~r~~~LP~~vd~~~i~A~~~nGvL~I~~pk~~~ 147 (158)
.-++.-|+++ .+.++...+||.|.|...+.-.
T Consensus 22 ~v~v~~~~~l-~~~i~~~v~~g~L~I~~~~~~~ 53 (181)
T PF10988_consen 22 SVEVEADENL-LDRIKVEVKDGTLKISYKKNIS 53 (181)
T ss_dssp EEEEEEEHHH-HCCEEEEEETTEEEEEE-SCCT
T ss_pred EEEEEEChhh-cceEEEEEECCEEEEEECCCcC
Confidence 4455556544 6788999999999999985443
No 99
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=24.46 E-value=1e+02 Score=18.77 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=20.9
Q ss_pred CCEEEEEEEcCCCCCCCe-EEEEeeCcEEEE
Q 031515 56 PNSYVFVVDMPGIKASEI-KVQVESENVLVV 85 (158)
Q Consensus 56 ~d~~~i~~~lPG~~~~~i-~v~v~d~~~L~I 85 (158)
.+.|.|.+..+|+.+... .|.+..|....+
T Consensus 47 ~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 47 PGTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp SEEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred CEeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 368999999999988877 577775554444
No 100
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.30 E-value=45 Score=28.36 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=53.5
Q ss_pred CCceeEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCccc
Q 031515 47 ATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANV 126 (158)
Q Consensus 47 ~p~~~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~ 126 (158)
.|...+..+++...|.+..|-.+...+.+-..+ +.++.+ .+.|.-++.+|..+..
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~------------------------~~pyflrl~~p~~~~~ 57 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFS------------------------AGPYFLRLAGPGMVED 57 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhc------------------------cchhHHhhcCcchhhh
Confidence 477889999999999999997777777777764 444444 2234445777766533
Q ss_pred C-CeeEEE--eCCEEEEEEecCCCC
Q 031515 127 E-KISALC--QDGVLIVTVEKVPPP 148 (158)
Q Consensus 127 ~-~i~A~~--~nGvL~I~~pk~~~~ 148 (158)
+ .-.|+| ++|...|.+||..+.
T Consensus 58 d~~~n~s~d~kd~~~~vK~~K~~~~ 82 (466)
T KOG3247|consen 58 DARPNASYDAKDGYAHVKVPKFHPG 82 (466)
T ss_pred hccccCccccccceeEEeecCCCcc
Confidence 3 335555 589999999996543
No 101
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=22.17 E-value=3.8e+02 Score=20.74 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=25.5
Q ss_pred EEEeeCcEEEEEEEEecCCCCcCCCCCceEEEE------eeecceEEEEEECCC
Q 031515 75 VQVESENVLVVSGERKRDPKEKDNKDGVKYVRM------ERRFGKFMRKFVLPD 122 (158)
Q Consensus 75 v~v~d~~~L~I~g~~~~~~~~~~~~~~~~~~~~------e~~~~~f~r~~~LP~ 122 (158)
|.+++ +.|+|++.+..... ......+... ...+|.|+-+++||.
T Consensus 60 v~v~~-G~L~i~a~~~~~~~---~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~ 109 (258)
T cd02178 60 VSVED-GNLVLSATRHPGTE---LGNGYKVTTGSITSKEKVKYGYFEARAKASN 109 (258)
T ss_pred eEEEC-CEEEEEEEcCCCCc---CCCCccEEEEEEEeCCceEEEEEEEEEEcCC
Confidence 56675 58999988765420 0111222221 224678889999985
No 102
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=22.13 E-value=67 Score=20.22 Aligned_cols=35 Identities=6% Similarity=0.214 Sum_probs=23.6
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEeeCcEEEE
Q 031515 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVV 85 (158)
Q Consensus 51 ~i~e~~d~~~i~~~lPG~~~~~i~v~v~d~~~L~I 85 (158)
.+.+..+.|.|++.+=|+....|.+.-.||..+.|
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG~~i~V 48 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNGVKIAV 48 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS-EEEE
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCCeEEEe
Confidence 44566679999999999988888888887644433
No 103
>PF14913 DPCD: DPCD protein family
Probab=21.95 E-value=1.2e+02 Score=22.96 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=30.3
Q ss_pred eeEEEeCCEEEEEEEcCCCC-------CCCeEEEEeeCcEEEEEEEEec
Q 031515 50 ADVVEYPNSYVFVVDMPGIK-------ASEIKVQVESENVLVVSGERKR 91 (158)
Q Consensus 50 ~~i~e~~d~~~i~~~lPG~~-------~~~i~v~v~d~~~L~I~g~~~~ 91 (158)
+-|.-++..|.=++.+|.++ .+.|+....+ |.|+|+-++..
T Consensus 123 ivvRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~n-NTLIIsYkKP~ 170 (194)
T PF14913_consen 123 IVVRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQN-NTLIISYKKPK 170 (194)
T ss_pred EEEECcCccceeEecCCcHHhhCCCcchhhceeeeec-CeEEEEecCcH
Confidence 34455666899999999653 3477788885 89999977664
No 104
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.73 E-value=7.9 Score=24.18 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=9.9
Q ss_pred eeEEEeCCEEEE
Q 031515 129 ISALCQDGVLIV 140 (158)
Q Consensus 129 i~A~~~nGvL~I 140 (158)
|.|.|+||+|.=
T Consensus 7 IEaiYEnGVfKP 18 (67)
T COG2880 7 IEAIYENGVLKP 18 (67)
T ss_pred HHHHHhcccccc
Confidence 478999999873
No 105
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=21.48 E-value=1.6e+02 Score=20.91 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=19.6
Q ss_pred CCCCCCCeEEEEeeCcEEEEEEEEec
Q 031515 66 PGIKASEIKVQVESENVLVVSGERKR 91 (158)
Q Consensus 66 PG~~~~~i~v~v~d~~~L~I~g~~~~ 91 (158)
.|+...++.|.+++ +.++++|....
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEEeCC
Confidence 47777788888885 68999988765
No 106
>PRK14290 chaperone protein DnaJ; Provisional
Probab=21.44 E-value=4.2e+02 Score=21.83 Aligned_cols=29 Identities=14% Similarity=0.033 Sum_probs=17.8
Q ss_pred EEECCCCcccCCeeEEEeCCEEEEEEecC
Q 031515 117 KFVLPDNANVEKISALCQDGVLIVTVEKV 145 (158)
Q Consensus 117 ~~~LP~~vd~~~i~A~~~nGvL~I~~pk~ 145 (158)
.|+|.+-+--..++...-+|.++|.+|..
T Consensus 277 ~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g 305 (365)
T PRK14290 277 KINFPQAALGGEIEIKLFREKYNLKIPEG 305 (365)
T ss_pred EeCHHHHhCCCEEEEEcCCceEEEEECCc
Confidence 44444444444555555678888888854
No 107
>PF09985 DUF2223: Domain of unknown function (DUF2223); InterPro: IPR019248 This entry represents various prokaryotic membrane-anchored proteins predicted to be involved in the regulation of amylopullulanase. ; PDB: 1UG9_A 1ULV_A.
Probab=21.28 E-value=3.1e+02 Score=21.17 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=48.5
Q ss_pred ceeEEEeCCEEEEEEEcC----------CCCCCCeEEEEeeCcEEEEEEEEe-cCCCCcCCCCCceEEEEeeecc--eEE
Q 031515 49 PADVVEYPNSYVFVVDMP----------GIKASEIKVQVESENVLVVSGERK-RDPKEKDNKDGVKYVRMERRFG--KFM 115 (158)
Q Consensus 49 ~~~i~e~~d~~~i~~~lP----------G~~~~~i~v~v~d~~~L~I~g~~~-~~~~~~~~~~~~~~~~~e~~~~--~f~ 115 (158)
.+.|.+.++.|++++.+. ||+..-|.|.++++..-.-+.-.. ... +-+..|...=+..| +..
T Consensus 35 ~f~v~~~g~~~~f~~~~~~l~NpW~~P~GFS~q~i~IYid~~~gg~~~~~~pG~n~-----~~~~~Wd~ai~i~Gw~~~~ 109 (228)
T PF09985_consen 35 SFKVYEDGDNLVFRFTFADLTNPWNGPNGFSLQIIQIYIDTPDGGGTSTLKPGLNV-----EFGHPWDYAIRISGWGSYG 109 (228)
T ss_dssp EEEEEEETTEEEEEEEESS---TT---SS-SSEEEEEEEE-S-SS-EE-S-GGG-E-----EESS-ECEEEEEEST--T-
T ss_pred EEEEEEcCCEEEEEEEECCCCCCcccccCccceEEEEEEecCCCCcccccCCcccC-----CCCCCccEEEEEEeeeccc
Confidence 468899999999999983 677788888888532100010000 000 00223332222222 125
Q ss_pred EEEECCCCcc-cCC--eeEEEeCCEEEEEEecCCC
Q 031515 116 RKFVLPDNAN-VEK--ISALCQDGVLIVTVEKVPP 147 (158)
Q Consensus 116 r~~~LP~~vd-~~~--i~A~~~nGvL~I~~pk~~~ 147 (158)
..+..|..-. ... |.+.-.++.+++.+||.--
T Consensus 110 ~~~~~~~G~~~~~~~~v~~~~~~~~I~~~vpk~~L 144 (228)
T PF09985_consen 110 NAIYDADGTAISGAPQVSVDPSGNTIIVEVPKKYL 144 (228)
T ss_dssp -EEE-TTS-E-EE--EEEEECCCTEEEEEEEGGGS
T ss_pred ceEEccCCccCCCcceEEeccCCCEEEEEcCHHHc
Confidence 6677776654 222 4455568999999999843
No 108
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=20.76 E-value=4.2e+02 Score=20.72 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=36.4
Q ss_pred EEEEE-EEcCCCCCCCeE-EEEe-eCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeeEEEe
Q 031515 58 SYVFV-VDMPGIKASEIK-VQVE-SENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQ 134 (158)
Q Consensus 58 ~~~i~-~~lPG~~~~~i~-v~v~-d~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 134 (158)
.+.|. -.|||+..+ ++ |+.. +.+.|... .++....+.-. ..|..-|+++|...-|+|.|.. ..
T Consensus 9 ~~~i~~~~l~g~~~e-~SGLTy~pd~~tLfaV-----------~d~~~~i~els-~~G~vlr~i~l~g~~D~EgI~y-~g 74 (248)
T PF06977_consen 9 RVVIEAKPLPGILDE-LSGLTYNPDTGTLFAV-----------QDEPGEIYELS-LDGKVLRRIPLDGFGDYEGITY-LG 74 (248)
T ss_dssp EEEEEEEE-TT--S--EEEEEEETTTTEEEEE-----------ETTTTEEEEEE-TT--EEEEEE-SS-SSEEEEEE--S
T ss_pred EEEEeeeECCCccCC-ccccEEcCCCCeEEEE-----------ECCCCEEEEEc-CCCCEEEEEeCCCCCCceeEEE-EC
Confidence 44443 479999886 43 5555 23554433 12333333333 2578899999998889998875 46
Q ss_pred CCEEEEE
Q 031515 135 DGVLIVT 141 (158)
Q Consensus 135 nGvL~I~ 141 (158)
||.+.|+
T Consensus 75 ~~~~vl~ 81 (248)
T PF06977_consen 75 NGRYVLS 81 (248)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 7777663
No 109
>COG4456 VagC Virulence-associated protein and related proteins [Function unknown]
Probab=20.63 E-value=1.5e+02 Score=18.91 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=16.8
Q ss_pred EEcCCCCCCCeEEEEeeCcEEEEEEE
Q 031515 63 VDMPGIKASEIKVQVESENVLVVSGE 88 (158)
Q Consensus 63 ~~lPG~~~~~i~v~v~d~~~L~I~g~ 88 (158)
+.+|+ +.+.|... |+.|+|+=.
T Consensus 20 ~~f~~---~~VeI~r~-G~~lII~P~ 41 (74)
T COG4456 20 FRFPE---DRVEIIRE-GDRLIIEPL 41 (74)
T ss_pred eecCC---cEEEEEEe-CCeEEEEeC
Confidence 45566 88888888 789999843
No 110
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=20.17 E-value=2.8e+02 Score=21.48 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=12.0
Q ss_pred CCCeEEEEe-eCcEEEEEEEEec
Q 031515 70 ASEIKVQVE-SENVLVVSGERKR 91 (158)
Q Consensus 70 ~~~i~v~v~-d~~~L~I~g~~~~ 91 (158)
++++. ++ || .|+|++.+..
T Consensus 45 ~~n~~--v~~dG-~L~I~a~~~~ 64 (259)
T cd02182 45 TANVQ--LSGNG-TLQITPLRDG 64 (259)
T ss_pred CcCEE--EcCCC-eEEEEEEecC
Confidence 45544 44 54 7999987653
Done!