RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 031515
(158 letters)
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 111 bits (280), Expect = 1e-32
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 9/108 (8%)
Query: 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
D+ E +++V +D+PG K E+KV+VE VLV K ++ +R ER
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKE-------EEDDHGLRSERS 53
Query: 111 FGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPP--QPKTIQVQ 156
+ F RKFVLP+NA+ +K+ A +DGVL VTV K+ PP +P+ IQ+Q
Sbjct: 54 YRSFSRKFVLPENADPDKVKASLKDGVLTVTVPKLEPPEKKPRRIQIQ 101
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 99.2 bits (248), Expect = 4e-28
Identities = 40/94 (42%), Positives = 62/94 (65%), Gaps = 6/94 (6%)
Query: 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
DV E ++YV D+PG K +IKV+VE + VL +SGER+ + +E++N Y+R ER
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVE-DGVLTISGEREEEEEEEEN-----YLRRERS 54
Query: 111 FGKFMRKFVLPDNANVEKISALCQDGVLIVTVEK 144
+G F R F LP++ + +KI A ++GVL +T+ K
Sbjct: 55 YGSFSRSFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 92.0 bits (229), Expect = 4e-25
Identities = 41/94 (43%), Positives = 65/94 (69%), Gaps = 4/94 (4%)
Query: 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
D E P ++VF D+PG+K ++KV+VE VL +SGERK++ ++K G + R+ER
Sbjct: 3 DWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKK----GDDWHRVERS 58
Query: 111 FGKFMRKFVLPDNANVEKISALCQDGVLIVTVEK 144
G+F+R+F LP+NA+ +++ A ++GVL VTV K
Sbjct: 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 89.7 bits (223), Expect = 1e-23
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 49 PADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRME 108
P D+ E + Y ++PG+ +I++ VE N L + GER+ + +E + Y+R E
Sbjct: 42 PVDIEETDDEYRITAELPGVDKEDIEITVE-GNTLTIRGEREEEEEE----EEEGYLRRE 96
Query: 109 RRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPPQPKTIQVQV 157
R +G+F R F LP+ + E I A ++G+L VT+ K P + K ++++
Sbjct: 97 RAYGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEPEEKKPKRIEI 145
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 75.6 bits (187), Expect = 9e-19
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 50 ADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMER 109
D+ E + Y+ D+PG K +IK+ + + L +S +R EKD K Y+R ER
Sbjct: 3 TDIKETDDEYIVEADLPGFKKEDIKLDYK-DGYLTISAKRDESKDEKDKKG--NYIRRER 59
Query: 110 RFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEK 144
+G F R F LP N + E+I A ++GVL +T+ K
Sbjct: 60 YYGSFSRSFYLP-NVDEEEIKAKYENGVLKITLPK 93
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 72.2 bits (178), Expect = 1e-17
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 13/93 (13%)
Query: 52 VVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRF 111
+ + V VD+PG+K +IKV+VE +NVL +SG+R+ + + ER +
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVE-DNVLTISGKREEEEE------------RERSY 47
Query: 112 GKFMRKFVLPDNANVEKISALCQDGVLIVTVEK 144
G+F R F LP++ + EK A ++GVL +T+ K
Sbjct: 48 GEFERSFELPEDVDPEKSKASLENGVLEITLPK 80
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 48.7 bits (117), Expect = 2e-08
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 13/89 (14%)
Query: 57 NSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMR 116
+ +D+ G K E+KV+V S+N LVV G+ + E++++ G YV E F R
Sbjct: 7 EKFQVTLDVKGFKPEELKVKV-SDNKLVVEGKHE----EREDEHG--YVSRE-----FTR 54
Query: 117 KFVLPDNANVEKI-SALCQDGVLIVTVEK 144
++ LP+ + + + S+L DGVL + K
Sbjct: 55 RYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 41.4 bits (98), Expect = 1e-05
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 57 NSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMR 116
N+Y + + G +++++VE N L V+G++ +++N++ +Y+ F R
Sbjct: 11 NNYRITLAVAGFSEDDLEIEVE-NNQLTVTGKK----ADEENEER-EYLHRGIAKRAFER 64
Query: 117 KFVLPDNANVEK 128
F L D+ V+
Sbjct: 65 SFNLADHVKVKG 76
>gnl|CDD|235586 PRK05738, rplW, 50S ribosomal protein L23; Reviewed.
Length = 92
Score = 29.7 bits (68), Expect = 0.21
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 43 KAMAATPADVVEYPNSYVFVVDM----PGIKAS--EI-KVQVESENVLVVSGERKR 91
K+ E N YVF V P IKA+ ++ V+VES N L V G+ KR
Sbjct: 12 KSTLLM-----EKQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKR 62
>gnl|CDD|107232 cd06477, ACD_HspB3_Like, Alpha crystallin domain (ACD) found in
mammalian HspB3, also known as heat-shock protein
27-like protein (HSPL27, 17-kDa) and similar proteins.
sHsps are molecular chaperones that suppress protein
aggregation and protect against cell stress, and are
generally active as large oligomers consisting of
multiple subunits. HspB3 is expressed in adult skeletal
muscle, smooth muscle, and heart, and in several other
fetal tissues. In muscle cells HspB3 forms an
oligomeric 150 kDa complex with myotonic dystrophy
protein kinase-binding protein (MKBP/ HspB2), this
complex may comprise one of two independent muscle-cell
specific chaperone systems. The expression of HspB3 is
induced during muscle differentiation controlled by the
myogenic factor MyoD. HspB3 may also interact with Hsp22
(HspB8).
Length = 83
Score = 29.0 bits (65), Expect = 0.29
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 114 FMRKFVLPDNANVEKISA-LCQDGVLIVTVE 143
F R++ LPD + +SA LC DG+L+V +
Sbjct: 52 FTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82
>gnl|CDD|215313 PLN02575, PLN02575, haloacid dehalogenase-like hydrolase.
Length = 381
Score = 30.2 bits (68), Expect = 0.39
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 1 MDLRSLAGFDSPFFSILEDVLELPEEQENTRNNPSRAYVRD 41
+DL++LA +SP F E LE+ +E++ PS A V D
Sbjct: 340 VDLKNLADIESPEFGPPEPELEMEKEEDREL--PSSAGVDD 378
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts with
a large number of different proteins. It is found in
many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation of
actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked to
several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated state
is a high molecular weight aggregated form (100-800kDa)
composed of up to 24 subunits, which forms as a result
of multiple interactions within the ACD, and is required
for chaperone function and resistance to oxidative
stress. Upon phosphorylation these large aggregates
rapidly disassociate to smaller oligomers and chaperone
activity is modified. High constitutive levels of Hsp27
have been detected in various cancer cells, in
particular those of carcinoma origin. Over-expression of
Hsp27 has a protective effect against various
diseases-processes, including Huntington's disease.
Mutations in Hsp27 have been associated with a form of
distal hereditary motor neuropathy type II and
Charcot-Marie-Tooth disease type 2.
Length = 86
Score = 27.5 bits (61), Expect = 1.4
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 114 FMRKFVLPDNANVEKI-SALCQDGVLIV 140
F RK+ LP + + S+L DG+L V
Sbjct: 55 FTRKYTLPPGVDPTAVTSSLSPDGILTV 82
>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit;
Reviewed.
Length = 354
Score = 28.3 bits (64), Expect = 1.9
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 119 VLPDNANVEKISALCQDGVLIVTVEKVPPPQPKTIQVQVA 158
VLP + ++E+I L DG+++ P PK +Q +
Sbjct: 194 VLPYDTSLEEIKNLNPDGIVLSN----GPGDPKELQPYLP 229
>gnl|CDD|223167 COG0089, RplW, Ribosomal protein L23 [Translation, ribosomal
structure and biogenesis].
Length = 94
Score = 26.8 bits (60), Expect = 2.0
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 54 EYPNSYVFVVDM----PGIKAS--EI-KVQVESENVLVVSGERKR 91
E N YVF+VD P IKA+ E+ V+VE N L G+ KR
Sbjct: 19 EKENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKR 63
>gnl|CDD|223035 PHA03294, PHA03294, envelope glycoprotein H; Provisional.
Length = 835
Score = 28.1 bits (63), Expect = 2.1
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 10 DSPFFSILEDVLELPEEQENTRNNPSRAYVRDAKAMAATPADVVEYPNSY 59
D + + +V PEE + R + SRA+ +A M A + + P +
Sbjct: 318 DGSMYKAMREVAAYPEESLDYRYHLSRAH-AEALLMLAEAESLDDRPYYF 366
>gnl|CDD|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase.
Length = 545
Score = 27.5 bits (61), Expect = 3.4
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 28 ENTRNNPSRAYVRDAKAMAATPADVVEYPN 57
ENT S V DAK M+A P VVE P+
Sbjct: 496 ENT--GKSSVNVIDAKTMSADPVAVVELPH 523
>gnl|CDD|147308 pfam05059, Orbi_VP4, Orbivirus VP4 core protein. Orbiviruses are
double stranded RNA retroviruses of which the bluetongue
virus is a member. The core of bluetongue virus (BTV) is
a multienzyme complex composed of two major proteins
(VP7 and VP3) and three minor proteins (VP1, VP4 and
VP6) in addition to the viral genome. VP4 has been shown
to perform all RNA capping activities and has both
methyltransferase type 1 and type 2 activities
associated with it.
Length = 642
Score = 26.6 bits (59), Expect = 6.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 89 RKRDPKEKDNKDGVKYVRMERRFGKFMRKFVL 120
R D KE + G + VR+ ++FG +R +
Sbjct: 95 RDHDMKEFETLIGRRRVRLRKKFGDILRNYAF 126
>gnl|CDD|233554 TIGR01739, tegu_FGAM_synt, herpesvirus tegument
protein/v-FGAM-synthase. This model describes a family
of large proteins of herpesvirues. The protein is
described variably as tegument protein or
phosphoribosylformylglycinamidine synthase
(FGAM-synthase). Most of the length of the protein shows
homology to eukaryotic FGAM-synthase. Functional
characterizations were not verified during construction
of this model.
Length = 1202
Score = 26.6 bits (59), Expect = 7.0
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 111 FGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPP 148
+R + E ++AL + + +P
Sbjct: 332 IVGSIRPLGPC--SVKEHLTALLPPCGAELDLSNLPDE 367
>gnl|CDD|219739 pfam08190, PIH1, pre-RNA processing PIH1/Nop17. This domain is
involved in pre-rRNA processing. It has has been shown
to be required either for nucleolar retention or correct
assembly of the box C/D snoRNP in Saccharomyces
cerevisiae. The C-terminal region of this family has
similarity to the CS domain pfam04969.
Length = 315
Score = 26.2 bits (58), Expect = 7.8
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 56 PNSYVFVVDMPGIK-ASEIKVQVESENVLVVSGERK 90
P V +++PG+K +E + V + +L+ S + K
Sbjct: 247 PKELVLEIELPGLKSVAECDLDVGEDRLLLESRKPK 282
>gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 430
Score = 26.5 bits (59), Expect = 8.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 64 DMPGIKASEIKVQVESENVLVVSGERKRDPK 94
DMP ++ E++ +E++ +V+S DPK
Sbjct: 102 DMPLVEKDELEKLLENDADIVMSVFHLADPK 132
>gnl|CDD|202408 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase,
dimerisation domain.
Length = 131
Score = 25.5 bits (57), Expect = 9.4
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 90 KRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPD 122
DPK + + R+ R FG+ + + P
Sbjct: 76 IGDPKGLSDA---ELERLTRAFGRELESIIGPG 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.372
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,164,668
Number of extensions: 737690
Number of successful extensions: 804
Number of sequences better than 10.0: 1
Number of HSP's gapped: 787
Number of HSP's successfully gapped: 33
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)