RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031515
(158 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 145 bits (367), Expect = 2e-45
Identities = 53/148 (35%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 11 SPFFSILEDVLELPEEQENTRNNPSRAYVRDAKAMAATPADVVEYPNSYVFVVDMPGIKA 70
S F D+ P + + + A A D E P ++VF D+PG+K
Sbjct: 7 SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 66
Query: 71 SEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKIS 130
E+KV+VE NVLVVSGER ++ ++K++K + R+ER GKF+R+F L ++A VE++
Sbjct: 67 EEVKVEVEDGNVLVVSGERTKEKEDKNDK----WHRVERSSGKFVRRFRLLEDAKVEEVK 122
Query: 131 ALCQDGVLIVTVEKVPPPQPKTIQVQVA 158
A ++GVL VTV K +P+ +Q++
Sbjct: 123 AGLENGVLTVTVPKAEVKKPEVKAIQIS 150
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 122 bits (309), Expect = 1e-36
Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 4/148 (2%)
Query: 9 FDSPFFSILEDVLELPEEQENTRNNPSRAYVRDAKAMAATPADVVEYPNSYVFVVDMPGI 68
F + + + +P+ A P ++E + +PG+
Sbjct: 18 FFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGV 77
Query: 69 KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEK 128
+I + + L + +R + + + R LP E
Sbjct: 78 NKEDIILNAV-GDTLEIRAKRSPLMITESER---IIYSEIPEEEEIYRTIKLPATVKEEN 133
Query: 129 ISALCQDGVLIVTVEKVPPPQPKTIQVQ 156
SA ++GVL V + K K I ++
Sbjct: 134 ASAKFENGVLSVILPKAESSIKKGINIE 161
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 118 bits (299), Expect = 9e-36
Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 49 PADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRME 108
D+ E N +V D+PGI S+I+VQ++ + +L + GERK + + + + R+E
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMD-KGILSIRGERKSESSTETER----FSRIE 60
Query: 109 RRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVP 146
RR+G F R+F LPD+A+ + I+A ++GVL + + K P
Sbjct: 61 RRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPKRP 98
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 114 bits (288), Expect = 6e-34
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 9/121 (7%)
Query: 32 NNPSRAYVRDAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKR 91
S R + P D+ E V V D+ G +IK +V +N L++ ER+
Sbjct: 9 QKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREI 68
Query: 92 DPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVE-KISALCQDGVLIVTVEKVPPPQP 150
+ +R + LP N + +IS ++GVL + +
Sbjct: 69 TEPG--------VKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVF 120
Query: 151 K 151
K
Sbjct: 121 K 121
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 79.2 bits (195), Expect = 2e-19
Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Query: 35 SRAYVRDAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPK 94
+++R +++ + + +D+ E+KV+V +V+ V G+ +
Sbjct: 51 PPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKH----E 105
Query: 95 EKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISA-LCQDGVLIVTVEKVPPPQP-KT 152
E+ ++ G ++ E F RK+ +P + + I++ L DGVL V + P +T
Sbjct: 106 ERQDEHG--FISRE-----FHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERT 158
Query: 153 IQVQV 157
I +
Sbjct: 159 IPITR 163
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 74.4 bits (183), Expect = 2e-18
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 13/108 (12%)
Query: 47 ATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVR 106
A V P + ++D+ EI V+V + + V + D ++
Sbjct: 1 GAMAQVPTDPGYFSVLLDVKHFSPEEISVKVV-GDHVEVHARHEER------PDEHGFIA 53
Query: 107 MERRFGKFMRKFVLPDNANVEKI-SALCQDGVLIVTVEKVPPPQPKTI 153
E F R++ LP + + SAL +GVL +
Sbjct: 54 RE-----FHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPS 96
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 69.8 bits (171), Expect = 9e-17
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 57 NSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMR 116
+ + +D+ E+KV+V +V+ V G+ ++ +D ++ E F R
Sbjct: 6 DRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKH------EERQDEHGFISRE-----FHR 53
Query: 117 KFVLPDNANVEKI-SALCQDGVLIVTVEKVPPPQPK 151
K+ +P + + I S++ DGVL V + P+
Sbjct: 54 KYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPE 89
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 69.9 bits (171), Expect = 2e-16
Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 46 AATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYV 105
+ ++V + +V +D+ ++ V+V+ E+ + + G+ + +D Y+
Sbjct: 1 GSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQ-EDFVEIHGKH------NERQDDHGYI 53
Query: 106 RMERRFGKFMRKFVLPDNANVEKI-SALCQDGVLIVTVEKVPPPQP-----KTIQVQ 156
E F R++ LP N + + +L DG+L + K+P + I V
Sbjct: 54 SRE-----FHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 64.3 bits (157), Expect = 1e-14
Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 16/97 (16%)
Query: 54 EYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGK 113
+ + +D+ E+ V+ + + V+ ++G+ + ++ G Y+
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTK-DGVVEITGKH----AARQDEHG--YISRC----- 51
Query: 114 FMRKFVLPDNANVEKI-SALCQDGVLIVTVEKVPPPQ 149
F RK+ LP + ++ S+L +G L V P P+
Sbjct: 52 FTRKYTLPPGVDPTQVSSSLSPEGTLTVE---APMPK 85
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 60.6 bits (146), Expect = 8e-12
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 51 DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
++ + P ++KV + N + V G KE+ ++ E
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKG-NKVYVHGVTG---KEEKTENASHSEHRE-- 281
Query: 111 FGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPPQPK 151
F + FV P+ + K A DG+++V P K
Sbjct: 282 ---FYKAFVTPEVVDASKTQAEIVDGLMVVEA-----PLFK 314
Score = 56.8 bits (136), Expect = 2e-10
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 16/157 (10%)
Query: 1 MDLRSLAGFDSPFFSILEDVLELPEEQENTRNNPSRAYVRDAKAMAATPADVVEYPNSYV 60
L D+ F S+++++ + + + + +
Sbjct: 58 FSLEPFTAMDNAFESVMKEMSAIQPR--EFHPELEYTQPGELDFLKDAYEVGKDGRLHFK 115
Query: 61 FVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVL 120
++ KA EI ++ + +N LVV ++ G + R L
Sbjct: 116 VYFNVKNFKAEEITIKAD-KNKLVVRAQKS-------VACGDAAMSES-----VGRSIPL 162
Query: 121 PDNANVEKI-SALCQDGVLIVTVEKVPPPQPKTIQVQ 156
P + + I + + D VL++ P
Sbjct: 163 PPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSP 199
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 2e-04
Identities = 25/186 (13%), Positives = 48/186 (25%), Gaps = 62/186 (33%)
Query: 9 FDSPFFSILEDVLELPEEQENTRNNPSR-----AY---------VRDAKAMAA------- 47
D + S + + + + R Y V++AKA A
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 48 --TPAD------VVEYPNSYVFVVDMP----------------GIKASEIKVQVESENVL 83
T + +++ + + ++ +V + N
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 84 VVS--GERKRDPKEK-DNKDGVKYVRMERRFGKF--------MRK-----FVLPDNANVE 127
+S E RD DN V ++ RK V P +A++
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 128 KISALC 133
L
Sbjct: 389 -TILLS 393
Score = 33.7 bits (76), Expect = 0.019
Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 46/128 (35%)
Query: 56 PNSYVFVVDMPGI-K-------ASEIKVQVESEN-VLVVS-GERKR-------------- 91
P V + + G K KVQ + + + ++
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 92 -DPKEKDNKDGVKYVRME--------RRFGKFMRK------FVLPDNANVEKISAL---C 133
DP D +++ RR K VL + N + +A C
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 134 QDGVLIVT 141
+ +L+ T
Sbjct: 267 K--ILLTT 272
Score = 31.7 bits (71), Expect = 0.091
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 27/119 (22%)
Query: 1 MDLRSLAGFDSPFFS--ILEDVLELPEEQENTR-------NNPSRAYVRDAKAMAATPAD 51
D + + S ++ ++ + T + K + +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---QKFV-----E 84
Query: 52 VVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKY--VRME 108
V N Y F+ S IK + +++ +RD DN+ KY R++
Sbjct: 85 EVLRIN-YKFL-------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.001
Identities = 31/178 (17%), Positives = 49/178 (27%), Gaps = 80/178 (44%)
Query: 9 FDSPFFSILEDVLELPEEQENTRNNP-----SRAYVRDAKAMAATPADVV-------EYP 56
F S + +L + T+ P +A D K+ PAD EY
Sbjct: 1719 FRSE-----KGLLSATQ---FTQ--PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY- 1767
Query: 57 NSYVFVVDMPGIKASEIKVQVESENVLV-VSG----ERKRDPKEKDNKDGVKYVRMERRF 111
+ A L ++ E V+ V R
Sbjct: 1768 -A-----------A------------LASLADVMSIE-----------SLVEVVF-YR-- 1789
Query: 112 GKFMRKFVLPDNA----------NVEKISALCQDGVLIVTVEKVPPPQPKTIQ-VQVA 158
G M+ V D N +++A L VE+V +T V++
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV---GKRTGWLVEIV 1844
Score = 32.3 bits (73), Expect = 0.059
Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 54/128 (42%)
Query: 3 LRSLAGFDSPFFSILEDVLEL------------PEEQENTRN------NPSRAYV---RD 41
L SLA S +E ++E+ P ++ N NP R ++
Sbjct: 1770 LASLADV----MS-IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 42 A-----KAMAATPADVVE---Y--PNS-YVFV------VD----------MPGIKASEIK 74
A + + +VE Y N YV +D + I E++
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYV-AAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 75 VQVESENV 82
+ E V
Sbjct: 1884 KSLSLEEV 1891
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation,
mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T
3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W
2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X
2wdj_X 2wdl_X ...
Length = 92
Score = 29.4 bits (67), Expect = 0.16
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 19/63 (30%)
Query: 48 TPADVVEYP------------NSYVFVVDM----PGIKAS--EI-KVQVESENVLVVSGE 88
T DV+ P Y F V IK + KV+V N L V G+
Sbjct: 1 TAYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60
Query: 89 RKR 91
+KR
Sbjct: 61 KKR 63
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
3fik_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T*
3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M
3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T 1vs6_T ...
Length = 93
Score = 29.0 bits (66), Expect = 0.20
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 54 EYPNSYVFVVDM----PGIKAS--EI-KVQVESENVLVVSGERKR 91
E N+ V V IKA+ ++ +V+VE N LVV G+ KR
Sbjct: 25 EKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKR 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.33
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 16/45 (35%)
Query: 99 KDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVE 143
K +K +++ K D+A I A T+E
Sbjct: 19 KQALK--KLQASL-----KLYADDSAPALAIKA---------TME 47
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R
2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q*
1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U
1vow_U 1voy_U 1vp0_U
Length = 95
Score = 28.3 bits (64), Expect = 0.49
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 57 NSYVFVVDM----PGIKAS--EI-KVQVESENVLVVSGERKR 91
Y F V IK + + V+V + + V G+RKR
Sbjct: 23 GVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKR 64
>3erv_A Putative C39-like peptidase; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.10A {Bacillus
anthracis}
Length = 236
Score = 27.8 bits (61), Expect = 1.6
Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 7 AGFDSPFFSILEDVLELPEEQENTRNNPSRAYVRD-----AKAMAATPADVVEYPNSYVF 61
AG + ++ ++ + R NP+ +V + + + Y+
Sbjct: 62 AGITVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKYLP 121
Query: 62 --VVDMPGIKASEIKVQVESEN-VLV 84
VD+ G E+ V++ V++
Sbjct: 122 NKAVDLTGKSIEELYKSVKAGQPVVI 147
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 27.6 bits (61), Expect = 1.8
Identities = 11/72 (15%), Positives = 27/72 (37%)
Query: 20 VLELPEEQENTRNNPSRAYVRDAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVES 79
V +P+ + A + P + ++ + +PG ++K+
Sbjct: 268 VTVVPDVTKGDWQPLIDALPNFVEQAEQAPKPITIDTHNRQVRLFLPGFDKKQVKLTQYG 327
Query: 80 ENVLVVSGERKR 91
V V +G+++R
Sbjct: 328 PEVTVEAGDQRR 339
>2jhp_A VP4 core protein; viral protein, viral capping enzyme, virion PR
viral protein; HET: SAH GUN; 2.5A {Bluetongue virus 10}
PDB: 2jh8_A* 2jha_A* 2jhc_A* 2jh9_A*
Length = 644
Score = 26.5 bits (58), Expect = 4.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 89 RKRDPKEKDNKDGVKYVRMERRFGKFMRKFVL 120
R D K +N+ G + +RM + FG +R +
Sbjct: 95 RSHDMKAFENEIGRRRIRMRKGFGDALRNYAF 126
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB:
1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S*
1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S*
1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Length = 85
Score = 24.9 bits (55), Expect = 6.0
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 14/57 (24%)
Query: 43 KAMAATPADVVEYPNSYVFVVDMPGIKASEIK--------VQVESENVLVVSGERKR 91
KAM ++ N F VD K E+ V VE N K+
Sbjct: 14 KAMNDM-----DFQNKLQFAVDDRASK-GEVADAVEEQYDVTVEQVNTQNTMDGEKK 64
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X
3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 1s1i_T 3jyw_T
Length = 142
Score = 25.2 bits (55), Expect = 7.5
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 14/57 (24%)
Query: 43 KAMAATPADVVEYPNSYVFVVDMPGIKASEIK--------VQVESENVLVVSGERKR 91
AM VE N VF V M K +IK V V N LV K+
Sbjct: 71 TAMKK-----VEDGNILVFQVSMKANKY-QIKKAVKELYEVDVLKVNTLVRPNGTKK 121
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 198
Score = 25.3 bits (55), Expect = 8.7
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 14/57 (24%)
Query: 43 KAMAATPADVVEYPNSYVFVVDMPGIKASEIK--------VQVESENVLVVSGERKR 91
A+ NS +F VD+ K I+ V+V N L+ K+
Sbjct: 123 AAIKNI-----ADENSLLFTVDVRADK-KMIREAISNFFGVKVRKVNTLIRPDGTKK 173
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 25.2 bits (55), Expect = 9.6
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 43 KAMAATPADVVEYPNSYVFVVDMPGIKASEIK--------VQVESENVLVVSGERKR 91
KAM +E N+ VF V K +IK V+V S N L K+
Sbjct: 79 KAMKK-----MEDENTMVFYVHNRSTKP-QIKSAFEKLYNVKVRSVNTLNTITGNKK 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.372
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,434,688
Number of extensions: 138407
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 38
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)