RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031515
         (158 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 96.4 bits (239), Expect = 7e-27
 Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 9/150 (6%)

Query: 9   FDSPFFSILEDVLELPEEQENTRNNPSRAYVRDAKAMAATPADVVEYPNSYVFVVDMPGI 68
           FD PF  +  D  +         +        +  A A    D  E P ++VF  D+PG+
Sbjct: 9   FD-PFADLWADPFDTFRSIVPAISGGGS----ETAAFANARMDWKETPEAHVFKADLPGV 63

Query: 69  KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEK 128
           K  E+KV+VE  NVLVVSGER ++ ++K++K    + R+ER  GKF+R+F L ++A VE+
Sbjct: 64  KKEEVKVEVEDGNVLVVSGERTKEKEDKNDK----WHRVERSSGKFVRRFRLLEDAKVEE 119

Query: 129 ISALCQDGVLIVTVEKVPPPQPKTIQVQVA 158
           + A  ++GVL VTV K    +P+   +Q++
Sbjct: 120 VKAGLENGVLTVTVPKAEVKKPEVKAIQIS 149


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 82.8 bits (204), Expect = 6e-22
 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 41  DAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKD 100
                   P  ++E       +  +PG+   +I +    + + +    R +       + 
Sbjct: 4   QISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEI----RAKRSPLMITES 59

Query: 101 GVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPPQPKTIQVQ 156
                       +  R   LP     E  SA  ++GVL V + K      K I ++
Sbjct: 60  ERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 115


>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
           thermophilus [TaxId: 274]}
          Length = 93

 Score = 27.4 bits (61), Expect = 0.34
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 57  NSYVFVVD----MPGIKA---SEIKVQVESENVLVVSGERKRDPKEKDNKDGVK--YVRM 107
             Y F V        IK    +  KV+V   N L V G++KR  +    +   K   V++
Sbjct: 22  GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQV 81

Query: 108 E 108
            
Sbjct: 82  A 82


>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
           [TaxId: 562]}
          Length = 93

 Score = 27.0 bits (60), Expect = 0.42
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 57  NSYVFVVDMPGIKASEIK--------VQVESENVLVVSGERKRDPKEKDNKDGVK--YVR 106
           N+ V  V     K +EIK        V+VE  N LVV G+ KR  +    +   K  YV 
Sbjct: 28  NTIVLKVAKDATK-AEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVT 86

Query: 107 ME 108
           ++
Sbjct: 87  LK 88


>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 93

 Score = 25.8 bits (57), Expect = 1.1
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 57  NSYVFVVD----MPGIKA---SEIKVQVESENVLVVSGERKRDPKEKDNKDGVK--YVRM 107
             Y F V        IK        V+V   + + V G+RKR  +    ++  K   VR+
Sbjct: 22  GVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRL 81

Query: 108 E 108
            
Sbjct: 82  A 82


>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 73

 Score = 23.9 bits (52), Expect = 4.5
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 128 KISALCQDGVLIVTVEKVPP 147
           K+    + G LIV    VP 
Sbjct: 6   KVLHYAKQGFLIVRTNWVPS 25


>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 103

 Score = 23.7 bits (51), Expect = 6.5
 Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 61  FVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
           F++D+     S +   +++ +       R      K   +    +    R
Sbjct: 28  FLLDISETDLSSLTASIKAPS------GRDEPCLLKRLPNNHIGISFIPR 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 578,956
Number of extensions: 25810
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 11
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)