BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031516
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D9K|A Chain A, Solution Structure Of The Zf-Traf Domain Of Fln29 Gene
          Product
          Length = 75

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 33 HKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRC 90
          H+   CP R+  C  C+  L  + L EH++ CG RTELC  C R + +++   H   C
Sbjct: 8  HEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEVC 65


>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
 pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
          Length = 170

 Score = 31.2 bits (69), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 13  FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVC 64
           F  + C QC    ++  + IH  ++CP+R V+CD C   +   D   H + C
Sbjct: 108 FALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNC 159


>pdb|3VPB|A Chain A, Argx From Sulfolobus Tokodaii Complexed With
           Lysw/glu/adp/mg/zn/sulfate
 pdb|3VPB|B Chain B, Argx From Sulfolobus Tokodaii Complexed With
           Lysw/glu/adp/mg/zn/sulfate
 pdb|3VPB|C Chain C, Argx From Sulfolobus Tokodaii Complexed With
           Lysw/glu/adp/mg/zn/sulfate
 pdb|3VPB|D Chain D, Argx From Sulfolobus Tokodaii Complexed With
           Lysw/glu/adp/mg/zn/sulfate
 pdb|3VPC|A Chain A, Argx From Sulfolobus Tokodaii Complexed With Adp
 pdb|3VPC|B Chain B, Argx From Sulfolobus Tokodaii Complexed With Adp
 pdb|3VPC|C Chain C, Argx From Sulfolobus Tokodaii Complexed With Adp
 pdb|3VPC|D Chain D, Argx From Sulfolobus Tokodaii Complexed With Adp
          Length = 282

 Score = 30.8 bits (68), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 20/70 (28%)

Query: 57  LAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVG-SSRNVRAAESDQGAHR 115
           + EH+E+ GN     H+   YI+ + R   + RC  + E  +G  +RN+           
Sbjct: 149 IIEHRELMGNSALKAHIVQEYIQYKGR---DIRCIAIGEELLGCYARNI----------- 194

Query: 116 RPAPPPPNEF 125
                PPNE+
Sbjct: 195 -----PPNEW 199


>pdb|2YUC|A Chain A, Solution Structure Of The Traf-Type Zinc Finger Domains
          (102-164) From Human Tnf Receptor Associated Factor 4
          Length = 76

 Score = 29.3 bits (64), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 12 AFEQVAC-SQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVC 64
          +F  + C ++C   + R  L  H   +CP+R + C+FC           H+ +C
Sbjct: 13 SFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMC 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,712,271
Number of Sequences: 62578
Number of extensions: 181552
Number of successful extensions: 425
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 20
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)