BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031516
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GPH4|XAF1_HUMAN XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1
Length = 301
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 14 EQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHL 73
+QV C+ C ++M++ L HK C +R V C FC+ + L H+ CG+RTELC
Sbjct: 55 QQVGCTMCQQSMQKSSLEFHKANECQERPVECKFCKLDMQLSKLELHESYCGSRTELCQG 114
Query: 74 CNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFY 126
C ++I R H C + +G + A E + H P N+++
Sbjct: 115 CGQFIMHRMLAQHRDVCRS-EQAQLGKGERISAPEREIYCHYCNQMIPENKYF 166
>sp|Q99MM4|TRAD1_RAT TRAF-type zinc finger domain-containing protein 1 OS=Rattus
norvegicus GN=Trafd1 PE=2 SV=2
Length = 576
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 15 QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLC 74
QV C +C++ +E+ L H CP R+ C C+ L V L EH++ CG RTELC C
Sbjct: 61 QVTC-KCNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSC 119
Query: 75 NRYIRLRERYNHESRCTGVPE 95
R + ++E H + C V E
Sbjct: 120 GRNVLVKELQTHPAVCGRVEE 140
>sp|Q3UDK1|TRAD1_MOUSE TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus
GN=Trafd1 PE=1 SV=1
Length = 580
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 15 QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLC 74
QV C +C++ +E+ L H CP R+ C C+ L V L EH++ CG RTELC C
Sbjct: 61 QVTC-KCNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSC 119
Query: 75 NRYIRLRERYNHESRCTGVPE 95
R + ++E H C V E
Sbjct: 120 GRNVLVKELKTHPEVCGRVEE 140
>sp|Q58D05|TRAD1_BOVIN TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus
GN=TRAFD1 PE=2 SV=1
Length = 580
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 15 QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLC 74
QV C +C++ +E+ L H+ CP R+ C C+ L + L +H++ CG RTELC C
Sbjct: 61 QVTC-KCNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHEDYCGARTELCGTC 119
Query: 75 NRYIRLRERYNHESRCT-GVPENTVGSSRNVRAAESDQGAHR 115
R + +++ H C V E V ++ A + G R
Sbjct: 120 GRNVLVKDLKTHPEVCGRDVEEKRVEAAMPPNAYDESWGPDR 161
>sp|Q58DH1|XAF1_BOVIN XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=2 SV=2
Length = 297
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 3 FDDFCYSLHAFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFP--LPAVDLAEH 60
++ C H +QV C+ C +++ + L H+ + C +R V C FC+ L VDL EH
Sbjct: 46 MEEHCQGGH--QQVGCAMCQQSVPKHSLDSHEAQECQERPVECQFCQLAVRLNKVDLHEH 103
Query: 61 QEVCGNRTELCHLCNRYIRLRERYNHESRC 90
CG +TELC C +++ LR H C
Sbjct: 104 H--CGQQTELCPDCGQHVMLRVLARHREEC 131
>sp|Q4R970|TRAD1_MACFA TRAF-type zinc finger domain-containing protein 1 OS=Macaca
fascicularis GN=TRAFD1 PE=2 SV=1
Length = 582
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 15 QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLC 74
QV C +C++ +E+ +L H+ CP R+ C C+ L + L EH++ CG RTELC C
Sbjct: 61 QVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNC 119
Query: 75 NRYIRLRERYNHESRC 90
R + +++ H C
Sbjct: 120 GRNVLVKDLKTHPEVC 135
>sp|O14545|TRAD1_HUMAN TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens
GN=TRAFD1 PE=1 SV=1
Length = 582
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 15 QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLC 74
QV C +C++ +E+ +L H+ CP R+ C C+ L + L EH++ CG RTELC C
Sbjct: 61 QVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNC 119
Query: 75 NRYIRLRERYNHESRC 90
R + +++ H C
Sbjct: 120 GRNVLVKDLKTHPEVC 135
>sp|Q28DL4|TRAF6_XENTR TNF receptor-associated factor 6 OS=Xenopus tropicalis GN=traf6
PE=2 SV=1
Length = 558
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH 72
F V CSQC + + L HK E CP+R + C+ C + D H + C C
Sbjct: 159 FAGVECSQCQSSFPKYSLQKHKFEECPRRQIFCENCAVAMALEDKLNHDQTCPLAYVTCE 218
Query: 73 LCN-RYIRLRERYNHESRCTGVP 94
C IR + ++ CT P
Sbjct: 219 YCQTNLIREQMPAHYSMDCTMAP 241
>sp|Q5NBU8|XAF1_MOUSE XIAP-associated factor 1 OS=Mus musculus GN=Xaf1 PE=2 SV=3
Length = 273
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 16 VACSQCSE-----TMEREILAIHK-GENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTE 69
V C +C E M+ + +H+ + Q C FCE + +L H+ CG+RTE
Sbjct: 32 VLCPECEEPIPESKMKEHMEVVHQQTKESQQHPAKCKFCELAVQLSNLDVHESHCGSRTE 91
Query: 70 LCHLCNRYIRLRERYNHESRC---TGVPE 95
C CN+ I L+ H++ C G PE
Sbjct: 92 HCPHCNQPITLQVLSQHKAMCLSAKGRPE 120
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 17 ACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTE------- 69
C C + +H+ +C + IV C CE P+P + EH EV +T+
Sbjct: 7 VCRNCKRNVASLHFMLHEA-HCLRFIVLCPECEEPIPESKMKEHMEVVHQQTKESQQHPA 65
Query: 70 LCHLCNRYIRLRERYNHESRC 90
C C ++L HES C
Sbjct: 66 KCKFCELAVQLSNLDVHESHC 86
>sp|B6CJY5|TRAF6_MACMU TNF receptor-associated factor 6 OS=Macaca mulatta GN=TRAF6 PE=2
SV=1
Length = 522
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH 72
F V C QC ++ + IH ++CP+R V+CD C + D H + C +C
Sbjct: 157 FALVDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAALVAFEDKEIHDQNCPLANVICE 216
Query: 73 LCNRYIRLRERYNH 86
CN + + NH
Sbjct: 217 YCNTILIREQMPNH 230
>sp|Q9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1
Length = 522
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH 72
F + C QC ++ + IH ++CP+R V+CD C + D H + C +C
Sbjct: 157 FALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICE 216
Query: 73 LCNRYIRLRERYNH 86
CN + + NH
Sbjct: 217 YCNTILIREQMPNH 230
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 3 FDDFCYSLHAFE-----QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDL 57
F F ++H + QV+C C+ +M E IH +NCP V C++C L +
Sbjct: 169 FQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHD-QNCPLANVICEYCNTILIREQM 227
Query: 58 AEHQEV 63
H ++
Sbjct: 228 PNHYDL 233
>sp|B6CJY4|TRAF6_CERAT TNF receptor-associated factor 6 OS=Cercocebus atys GN=TRAF6 PE=2
SV=1
Length = 522
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH 72
F V C QC ++ + IH ++CP+R V+CD C + D H + C +C
Sbjct: 157 FALVDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAALVAFEDKEIHDQNCPLANVICE 216
Query: 73 LCNRYIRLRERYNH 86
CN + + NH
Sbjct: 217 YCNTILIREQMPNH 230
>sp|B5DF45|TRAF6_RAT TNF receptor-associated factor 6 OS=Rattus norvegicus GN=Traf6 PE=2
SV=1
Length = 530
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH 72
F V C QC ++ + H E+CP+R V+C C P+P + H + C +C
Sbjct: 157 FALVICPQCQRFFQKCQINKHIIEDCPRRQVSCVNCAVPMPYEEKEIHDQSCPLANIICE 216
Query: 73 LCNRYIRLRERYNH 86
C + + NH
Sbjct: 217 YCGTILIREQMPNH 230
>sp|Q3ZCC3|TRAF6_BOVIN TNF receptor-associated factor 6 OS=Bos taurus GN=TRAF6 PE=2 SV=1
Length = 542
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH 72
F ++C QC ++ L IH + CP+R V C+ C + D H++ C +C
Sbjct: 158 FALMSCPQCQRPFQKCHLNIHILKECPRRQVPCENCAVSMAFEDKEIHEQNCPLANVICE 217
Query: 73 LCNRYIRLRERYNH 86
CN + + NH
Sbjct: 218 YCNTMLIREQMPNH 231
>sp|Q6DJN2|TRF6B_XENLA TNF receptor-associated factor 6-B OS=Xenopus laevis GN=traf6-b
PE=2 SV=1
Length = 556
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH 72
F V CSQC + + L H C +R + CD C + D++ H+ +C C
Sbjct: 159 FASVECSQCQGSFPKSRLEKHMEHECGRRKIFCDNCGLAMAYEDMSGHELICPLAYVTCE 218
Query: 73 LCN-RYIRLRERYNHESRCTGVP 94
C IR + ++ CT P
Sbjct: 219 YCQTNLIREQMPSHYSMDCTMAP 241
>sp|Q54FG0|Y0883_DICDI TNF receptor-associated factor family protein DDB_G0290883
OS=Dictyostelium discoideum GN=DDB_G0290883 PE=3 SV=1
Length = 460
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 21 CSETMEREILAIHKGENCPQRIVTCDF--CEFPLPAVDLAEHQEVCGNRTELCHLCNR-Y 77
C E +E + + H NC + VTC F CE L L HQ CG + +C C R
Sbjct: 130 CKEKIEVDQIDSHLI-NCQYKFVTCSFKGCEKILRMNSLESHQNECGFKLVICDFCKRDD 188
Query: 78 IRLRERYNHESRCTGVP 94
I+ +E H C VP
Sbjct: 189 IKKKELETHYKTCPMVP 205
>sp|Q60803|TRAF3_MOUSE TNF receptor-associated factor 3 OS=Mus musculus GN=Traf3 PE=1 SV=2
Length = 567
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 13 FEQVAC--SQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEV-CGNRTE 69
FE++ C + C E + R+ L H + C R TC C+ +P + L +H++ C
Sbjct: 142 FEELPCLRADCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIKLQKHEDTDCPCVVV 201
Query: 70 LC-HLCNRYIRLR-ERYNHESRCTGVP 94
C H C+ LR E H S C P
Sbjct: 202 SCPHKCSVQTLLRSELSAHLSECVNAP 228
>sp|P11467|DG17_DICDI RING finger protein DG17 OS=Dictyostelium discoideum GN=zfaA PE=2
SV=2
Length = 460
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 21 CSETMEREILAIHKGENCPQRIVTCDF--CEFPLPAVDLAEHQEVCGNRTELCHLCNR-Y 77
C E +E + + H NC + VTC F CE L L HQ CG + C C R
Sbjct: 130 CKEKIEVDQIDSHLI-NCQYKFVTCSFKGCEKILRMNSLESHQNECGFKLVTCDFCKRDD 188
Query: 78 IRLRERYNHESRCTGVP 94
I+ +E H C VP
Sbjct: 189 IKKKELETHYKTCPMVP 205
>sp|A7XUJ6|TRAF6_PIG TNF receptor-associated factor 6 OS=Sus scrofa GN=TRAF6 PE=2 SV=1
Length = 541
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH 72
F + C QC ++ L IH + CP+R V+C C + D H + C +C
Sbjct: 158 FALMNCPQCQRPFQKCQLNIHILKECPRRQVSCVNCAVSMAFEDKEIHDQNCPLANVICE 217
Query: 73 LCNRYIRLRERYNH 86
CN + + NH
Sbjct: 218 YCNTVLIREQMPNH 231
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 15 QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEV-CGNRTELCHL 73
QV+C C+ +M E IH +NCP V C++C L + H ++ C C
Sbjct: 187 QVSCVNCAVSMAFEDKEIHD-QNCPLANVICEYCNTVLIREQMPNHYDLDCPTAPVPCTF 245
Query: 74 CNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEF 125
+ + NH +R + ENT R + A++ QG AP P +
Sbjct: 246 STFGCHEKMQRNHLAR--HLQENTQSHMRMM--AQALQGLSLAVAPVPQRDM 293
>sp|Q68CR1|SE1L3_HUMAN Protein sel-1 homolog 3 OS=Homo sapiens GN=SEL1L3 PE=1 SV=2
Length = 1132
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 65 GNRTELCHLCNRYIRLRERYNHESRCTGVP 94
G R E CHL N Y+ L+ RY S C P
Sbjct: 469 GERQEACHLHNSYLDLQRRYGRPSMCRAFP 498
>sp|Q3MV19|TRF6A_XENLA TNF receptor-associated factor 6-A OS=Xenopus laevis GN=traf6-a
PE=1 SV=1
Length = 556
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH 72
F V CSQC + + +L H C +R CD C + D + H+ +C C
Sbjct: 159 FASVECSQCQGSFLKLLLDKHMEHECGRRRTFCDNCGLAMAYEDKSGHELICPMAYVTCD 218
Query: 73 LCN-RYIRLRERYNHESRCTGVP 94
C IR + ++ CT P
Sbjct: 219 YCQTNLIREQMPAHYSMDCTMAP 241
>sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2 OS=Mus musculus GN=Traf2 PE=1 SV=1
Length = 501
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 33 HKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESR 89
H + CP+R ++C C P VDL H EVC C C + RE + R
Sbjct: 151 HTEQECPKRSLSCQHCRAPCSHVDLEVHYEVCPKFPLTCDGCGKKKIPRETFQDHVR 207
>sp|Q6IWL4|TRAF6_DANRE TNF receptor-associated factor 6 OS=Danio rerio GN=traf6 PE=2 SV=2
Length = 542
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH 72
F C QC E++ L HK ++C QRI+TC C H++ C +C
Sbjct: 158 FATAPCPQCQESVPISHLDEHKSQHCLQRIMTCPDCAGSFVYAVKQNHEQFCPFANTVCE 217
Query: 73 LCN-RYIRLRERYNHESRCTGVP 94
C IR + + ++ C P
Sbjct: 218 YCEMELIRDQLALHCDTDCLKAP 240
>sp|Q54YP8|Y7813_DICDI TNF receptor-associated factor family protein DDB_G0278133
OS=Dictyostelium discoideum GN=DDB_G0278133 PE=3 SV=1
Length = 477
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 38 CPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYI-RLRERYNHESRCT 91
C RI+ C+ C + D +HQ C C CN I R +H++ CT
Sbjct: 165 CESRILQCNLCLIKFCSKDSDKHQNECSKVYSKCEFCNSNILRSSLSDHHKTHCT 219
>sp|Q12933|TRAF2_HUMAN TNF receptor-associated factor 2 OS=Homo sapiens GN=TRAF2 PE=1 SV=2
Length = 501
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 33 HKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTG 92
H CP+R ++C C P D+ H EVC C C + RE++ + G
Sbjct: 151 HLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREKFQDHVKTCG 210
>sp|Q55A66|Y2098_DICDI TNF receptor-associated factor family protein DDB_G0272098
OS=Dictyostelium discoideum GN=DDB_G0272098 PE=3 SV=1
Length = 1084
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 16 VACSQCSETMEREILAIHKGENCPQRIVTCDF----CEFPLPAVDLAEH 60
+ C C +++ + HK NCP+ ++ C + C+ L ++++H
Sbjct: 202 IKCEDCKHVFKKKYIQEHKESNCPESVIDCVYVAGGCQKKLKRYNMSKH 250
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQE 62
++ + C C+E + R IH E C + C+ C+ + EH+E
Sbjct: 172 YQTITCEHCNELINRIDHEIHLSEWCSDIPIKCEDCKHVFKKKYIQEHKE 221
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 3 FDDFCYSLHAFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEH-Q 61
+DDF + ++ +C + + + +L H E C + +TC+ C + +D H
Sbjct: 137 YDDFIRANPQIDEKLLKRCGK-INKSLLDEHD-EQCLYQTITCEHCNELINRIDHEIHLS 194
Query: 62 EVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTV 98
E C + C C +++Y E + + PE+ +
Sbjct: 195 EWCSDIPIKCEDCKHV--FKKKYIQEHKESNCPESVI 229
>sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6 OS=Mus musculus GN=Traf6 PE=1 SV=2
Length = 530
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCH 72
F V C QC ++ + H E+CP+R V+C C + + H + C +C
Sbjct: 157 FALVNCPQCQRPFQKCQVNTHIIEDCPRRQVSCVNCAVSMAYEEKEIHDQSCPLANIICE 216
Query: 73 LCNRYIRLRERYNH 86
C + + NH
Sbjct: 217 YCGTILIREQMPNH 230
>sp|Q61382|TRAF4_MOUSE TNF receptor-associated factor 4 OS=Mus musculus GN=Traf4 PE=1 SV=2
Length = 470
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 12 AFEQVAC-SQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTEL 70
+F V C ++C + R L H +CP+R + C+FC H+ VC +
Sbjct: 107 SFNVVPCPNRCPAKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGVCPQESVY 166
Query: 71 C 71
C
Sbjct: 167 C 167
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 14 EQVAC-SQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVC 64
E V C ++C M R +LA H CP+R C +C + HQ C
Sbjct: 163 ESVYCENKCGARMMRRLLAQHATSECPKRTQPCAYCTKEFVYDTIQSHQYQC 214
>sp|Q80TS8|SE1L3_MOUSE Protein sel-1 homolog 3 OS=Mus musculus GN=Sel1l3 PE=2 SV=3
Length = 1137
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 62 EVCGNRTELCHLCNRYIRLRERYNHESRCTGVP 94
+V G R E C N Y+ L+ +Y C G+P
Sbjct: 471 QVGGERRETCDFHNSYLDLKRKYGRAEVCRGLP 503
>sp|Q13114|TRAF3_HUMAN TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2
Length = 568
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 13 FEQVACSQ--CSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEV-CGNRTE 69
FE++ C + C E + R+ L H + C R TC C+ +P + L +H++ C
Sbjct: 143 FEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVV 202
Query: 70 LC-HLCNRYIRLR-ERYNHESRCTGVP 94
C H C+ LR E H S C P
Sbjct: 203 SCPHKCSVQTLLRSELSAHLSECVNAP 229
>sp|Q96CS4|ZN689_HUMAN Zinc finger protein 689 OS=Homo sapiens GN=ZNF689 PE=1 SV=1
Length = 500
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 10 LHAFEQ-VACSQCSETMERE-ILAIHKGENCPQRIVTCDFC--EFPLPAVDLAEHQEV-C 64
LH E+ C C R LAIH+ + +++ CD C F P++ LA H+ V
Sbjct: 366 LHTGEKPYPCPDCGRAFRRSGSLAIHRSTHTEEKLHACDDCGRRFAYPSL-LASHRRVHS 424
Query: 65 GNRTELCHLCNR 76
G R C LC++
Sbjct: 425 GERPYACDLCSK 436
>sp|Q8BKK5|ZN689_MOUSE Zinc finger protein 689 OS=Mus musculus GN=Znf689 PE=2 SV=1
Length = 500
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 10 LHAFEQ-VACSQCSETMERE-ILAIHKGENCPQRIVTCDFC--EFPLPAVDLAEHQEV-C 64
LH E+ C C R LAIH+ + +++ CD C F P++ LA H+ V
Sbjct: 366 LHTGEKPYPCPDCGRAFRRSGSLAIHRSTHTEEKLHACDDCGRRFAYPSL-LASHRRVHS 424
Query: 65 GNRTELCHLCNR 76
G R C LC++
Sbjct: 425 GERPYACDLCSK 436
>sp|Q99PJ7|ZN689_RAT Zinc finger protein 689 OS=Rattus norvegicus GN=Znf689 PE=2 SV=1
Length = 500
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 10 LHAFEQ-VACSQCSETMERE-ILAIHKGENCPQRIVTCDFC--EFPLPAVDLAEHQEV-C 64
LH E+ C C R LAIH+ + +++ CD C F P++ LA H+ V
Sbjct: 366 LHTGEKPYPCPDCGRAFRRSGSLAIHRSTHTEEKLHACDDCGRRFAYPSL-LASHRRVHS 424
Query: 65 GNRTELCHLCNR 76
G R C LC++
Sbjct: 425 GERPYACDLCSK 436
>sp|P38621|ZN12_MICSA Zinc finger protein ZFMSA12A OS=Micropterus salmoides PE=2 SV=1
Length = 415
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 10 LHAFEQVACSQCSETMER-EILAIHKGENCPQRIVTCDFCEFPLPAV-DLAEHQEV 63
+H+ ++ CSQC ++ ++ +L H+ + RI TC C P + +L HQ++
Sbjct: 155 VHSVQKFDCSQCGKSFKKMHLLGKHELTHTQNRIFTCRQCGKVYPGMSELRSHQKI 210
>sp|Q9BUZ4|TRAF4_HUMAN TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1
Length = 470
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 14 EQVAC-SQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVC 64
E V C ++C M R +LA H CP+R C +C + HQ C
Sbjct: 163 ESVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQC 214
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 12 AFEQVAC-SQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTEL 70
+F + C ++C + R L H +CP+R + C+FC H+ +C +
Sbjct: 107 SFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVY 166
Query: 71 C 71
C
Sbjct: 167 C 167
>sp|Q54FC5|Y0965_DICDI TNF receptor-associated factor family protein DDB_G0290965
OS=Dictyostelium discoideum GN=DDB_G0290965 PE=3 SV=1
Length = 575
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 21 CSETMEREILAIHKGENCPQRIVTCDF--CEFPLPAVDLAEHQEVCGNRTELCHL--CNR 76
C E + + L H +NC + V C C+ L L EH+ CG + C C+
Sbjct: 122 CKEIINIDQLDRHI-QNCKFKFVECSHNGCDVVLRLNSLKEHENQCGYKLVKCKYCACDD 180
Query: 77 YIRLRERYNHESRCTGVP 94
I+ +E NH + C P
Sbjct: 181 TIQ-KELENHNNECPKFP 197
>sp|Q557K0|Y3509_DICDI TNF receptor-associated factor family protein
DDB_G0273433/DDB_G0273509 OS=Dictyostelium discoideum
GN=DDB_G0273433 PE=3 SV=1
Length = 450
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 13 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEV 63
+ + C +CSE +ER+ L H C ++TC C + + H E
Sbjct: 167 YSLIQCEKCSELIERKKLNKHIESECDTLMITCSKCSASIGKKLMNHHLET 217
>sp|Q2IRA4|ATPF2_RHOP2 ATP synthase subunit b 2 OS=Rhodopseudomonas palustris (strain
HaA2) GN=atpF2 PE=3 SV=1
Length = 185
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 99 GSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFL-LTIAITGIAVLLGSLFFPR 150
G ++ A + G H+ P PP E + + + LTIA + +++ L PR
Sbjct: 6 GDAKGATAHTAADGGHKAPFPPFQKETFASQLVSLTIAFVALYLIVSKLALPR 58
>sp|Q13CX3|ATPF2_RHOPS ATP synthase subunit b 2 OS=Rhodopseudomonas palustris (strain
BisB5) GN=atpF2 PE=3 SV=1
Length = 185
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 99 GSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFL-LTIAITGIAVLLGSLFFPR 150
G ++ A + G H+ P PP E + + + LTIA + +++ + PR
Sbjct: 6 GDAKGATAHTAADGGHKAPFPPFQKETFASQLVSLTIAFVALYLIVSKIILPR 58
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,514,127
Number of Sequences: 539616
Number of extensions: 2418741
Number of successful extensions: 8024
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 7898
Number of HSP's gapped (non-prelim): 142
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)