BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031518
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LXA9|BH061_ARATH Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2
SV=1
Length = 315
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 5 EHKKAAALHEKLQLLRSITNS-HALSKTSIIVDASNYIEELKQKVERLNRDIENGQTSSD 63
E ++ L+++L LLRSI + +TSI+ DA +Y++EL K+ +L D + ++S
Sbjct: 156 ERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSH 215
Query: 64 -----------PNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFEELALNVLEAR 112
N+L +V + + I +K PGL+VS + T E L L + +
Sbjct: 216 LSTLITNESMVRNSLKFEVDQREVNTHIDICCPTK---PGLVVSTVSTLETLGLEIEQCV 272
Query: 113 VSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIRN 150
+SC FSLQA E EQ + + KQAL IRN
Sbjct: 273 ISCFSDFSLQASCFEVGEQRYMVTSEATKQAL---IRN 307
>sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1
SV=1
Length = 351
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 18/160 (11%)
Query: 5 EHKKAAALHEKLQLLRSITNS-HALSKTSIIVDASNYIEELKQKVERLNRDIENGQTSSD 63
E ++ L+++L +LRSI + +TSI+ DA +Y++EL K+ +L + + S++
Sbjct: 183 ERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNN 242
Query: 64 PNALPIQVTVKTLEKG---------FMINVFSKKS-----C---PGLLVSILETFEELAL 106
+ + +K L F I+ + + C PGLL+S + T E L L
Sbjct: 243 SHHSKLFGDLKDLNANEPLVRNSPKFEIDRRDEDTRVDICCSPKPGLLLSTVNTLETLGL 302
Query: 107 NVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQ 146
+ + +SC FSLQA E EQ + I + +KQAL +
Sbjct: 303 EIEQCVISCFSDFSLQASCSEGAEQRDFITSEDIKQALFR 342
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1
SV=1
Length = 450
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 33/174 (18%)
Query: 5 EHKKAAALHEKLQLLRSITNS-HALSKTSIIVDASNYIEELKQKVERLNRDIENGQTSSD 63
E ++ L+++L +LRS+ + + SI+ DA +Y++EL Q++ L+ ++E+ SS
Sbjct: 272 ERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELESTPPSSS 331
Query: 64 PNALPIQVTVKTLE------------------------------KGFMINVFSKKSCPGL 93
+ P+ T +TL K I++F + PGL
Sbjct: 332 -SLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMFCGRR-PGL 389
Query: 94 LVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQV 147
L+S + + L L+V +A +SC + F+L E ++ + +K LL
Sbjct: 390 LLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCQEDHDVLPEQIKAVLLDT 443
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
Length = 494
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 35/175 (20%)
Query: 5 EHKKAAALHEKLQLLRSITNS-HALSKTSIIVDASNYIEELKQKVERLNRDIENGQ---- 59
E ++ L+++L +LRS+ + + SI+ DA +Y++EL Q++ L+ ++E+
Sbjct: 312 ERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSL 371
Query: 60 --TSSD--------------------PNALP------IQVTVKTLE-KGFMINVFSKKSC 90
TSS P++LP +V V+ E + I++F +
Sbjct: 372 PPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHMFCGRR- 430
Query: 91 PGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALL 145
PGLL++ ++ + L L+V +A +SC + F+L E ++G+ I +K L
Sbjct: 431 PGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEILPDQIKAVLF 485
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2
SV=1
Length = 589
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 2 VSREHKKAAALHEKLQLLRSI-TNSHALSKTSIIVDASNYIEELKQKVER---------- 50
V E ++ L+++ LR++ N + K S++ DA +YI ELK K+++
Sbjct: 418 VEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQK 477
Query: 51 ----LNRDIENGQTS-SDPNAL--------PIQVTVKTLEKGFMINV-FSKKSCPGLLVS 96
+N++ N ++S D L ++V VK + MI + SK++ PG
Sbjct: 478 QIDVMNKEAGNAKSSVKDRKCLNQESSVLIEMEVDVKIIGWDAMIRIQCSKRNHPG--AK 535
Query: 97 ILETFEELALNVLEARVSCTDTFSLQ 122
+E +EL L V A +S + +Q
Sbjct: 536 FMEALKELDLEVNHASLSVVNDLMIQ 561
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1
Length = 592
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 31/150 (20%)
Query: 2 VSREHKKAAALHEKLQLLRSIT-NSHALSKTSIIVDASNYIEELKQKVERLNRDIE---- 56
V E ++ L+++ LR++ N + K S++ DA +YI ELK K+++ D E
Sbjct: 417 VEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAESDKEEIQK 476
Query: 57 ----------NGQT-------------SSDPNALPIQVTVKTLEKGFMINV-FSKKSCPG 92
NG+ S +++ +++ VK + MI V KK PG
Sbjct: 477 KLDGMSKEGNNGKGCGSRAKERKSSNQDSTASSIEMEIDVKIIGWDVMIRVQCGKKDHPG 536
Query: 93 LLVSILETFEELALNVLEARVSCTDTFSLQ 122
+E +EL L V A +S + +Q
Sbjct: 537 --ARFMEALKELDLEVNHASLSVVNDLMIQ 564
>sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION
FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1
Length = 318
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 EHKKAAALHEKLQLLRS-ITNSHALSKTSIIVDASNYIEELKQKVERLNRDI 55
E ++ + +KL LRS + N + K SI+ DA Y++EL+ + ++L DI
Sbjct: 136 ERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKLKSDI 187
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2
SV=1
Length = 590
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 2 VSREHKKAAALHEKLQLLRSI-TNSHALSKTSIIVDASNYIEELKQKVERLNRDIEN-GQ 59
V E ++ L+++ LRS+ N + K S++ DA +YI EL K++ + + E G
Sbjct: 435 VEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAERERLGY 494
Query: 60 TSSDPNALPIQVTVKTLEKGFMINVFSKKSCP---GLLVSILETFEELALNVLEA 111
+S+ P +L + V+T + + + +CP I FEE + V+ +
Sbjct: 495 SSNPPISLDSDINVQTSGEDVTVRI----NCPLESHPASRIFHAFEESKVEVINS 545
>sp|Q810D6|GRWD1_MOUSE Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus
GN=Grwd1 PE=2 SV=2
Length = 446
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 4 REHKKAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERLNRDIENGQTSSD 63
R+ K + + Q + +T+ + S + AS ++ Q + RD E+G+T +D
Sbjct: 338 RQFKSGSPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESGETETD 397
Query: 64 PN--ALPIQVTVKTLEKGFMINVFSKKSCPGLLVS 96
P ALP Q+ + + + CPG+L+S
Sbjct: 398 PGLAALPQQLLFVHQGETDLKELHWHPQCPGVLIS 432
>sp|Q5XI13|GRWD1_RAT Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus
GN=Grwd1 PE=2 SV=1
Length = 445
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 4 REHKKAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERLNRDIENGQTSSD 63
R+ K + + Q + +T+ + S + AS ++ Q + RD E+G+T +D
Sbjct: 337 RQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESGETETD 396
Query: 64 PN--ALPIQVTVKTLEKGFMINVFSKKSCPGLLVS 96
P ALP Q+ + + + CPG+L+S
Sbjct: 397 PGLAALPQQLLFVHQGETDLKELHWHPQCPGVLIS 431
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis
thaliana GN=AIB PE=2 SV=2
Length = 566
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 2 VSREHKKAAALHEKLQLLRSI-TNSHALSKTSIIVDASNYIEELKQKVE 49
V E ++ L+++ LRS+ N + K S++ DA +YI+EL++KV+
Sbjct: 397 VEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVK 445
>sp|P69634|RR4_PSEJP 30S ribosomal protein S4, chloroplastic (Fragment) OS=Pseudosasa
japonica GN=rps4 PE=3 SV=1
Length = 196
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R I+N SSDP LP +T+ TL+ KG + + +K
Sbjct: 142 QRSKRLIQNSIASSDPGKLPKHLTIDTLQYKGLVKKILDRK 182
>sp|P69649|RR4_PHYFL 30S ribosomal protein S4, chloroplastic (Fragment) OS=Phyllostachys
flexuosa GN=rps4 PE=3 SV=1
Length = 196
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R I+N SSDP LP +T+ TL+ KG + + +K
Sbjct: 142 QRSKRLIQNSIASSDPGKLPKHLTIDTLQYKGLVKKILDRK 182
>sp|P69650|RR4_SETVI 30S ribosomal protein S4, chloroplastic (Fragment) OS=Setaria
viridis GN=rps4 PE=3 SV=1
Length = 196
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +TV TL+ KG + + +K
Sbjct: 142 QRSKRLVQNSIASSDPGKLPKHLTVDTLQYKGLVKKILDRK 182
>sp|P69654|RR4_MELRE 30S ribosomal protein S4, chloroplastic (Fragment) OS=Melinis
repens GN=rps4 PE=3 SV=1
Length = 196
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +TV TL+ KG + + +K
Sbjct: 142 QRSKRLVQNSIASSDPGKLPKHLTVDTLQYKGLVKKILDRK 182
>sp|P36473|RR4_TRARA 30S ribosomal protein S4, chloroplastic (Fragment) OS=Tragus
racemosus GN=rps4 PE=3 SV=1
Length = 196
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +TV TL+ KG + + +K
Sbjct: 142 QRSKRLVQNSIASSDPGKLPKHLTVDTLQYKGLVQKILDRK 182
>sp|P0C488|RR4_ORYSJ 30S ribosomal protein S4, chloroplastic OS=Oryza sativa subsp.
japonica GN=rps4 PE=3 SV=1
Length = 201
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +T+ TL+ KG + + +K
Sbjct: 142 QRSKRLVQNSIASSDPGKLPKHLTIDTLQYKGLVKKILDRK 182
>sp|P0C487|RR4_ORYSI 30S ribosomal protein S4, chloroplastic OS=Oryza sativa subsp.
indica GN=rps4 PE=3 SV=1
Length = 201
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +T+ TL+ KG + + +K
Sbjct: 142 QRSKRLVQNSIASSDPGKLPKHLTIDTLQYKGLVKKILDRK 182
>sp|P0C486|RR4_ORYSA 30S ribosomal protein S4, chloroplastic OS=Oryza sativa GN=rps4
PE=3 SV=1
Length = 201
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +T+ TL+ KG + + +K
Sbjct: 142 QRSKRLVQNSIASSDPGKLPKHLTIDTLQYKGLVKKILDRK 182
>sp|Q6ENH2|RR4_ORYNI 30S ribosomal protein S4, chloroplastic OS=Oryza nivara GN=rps4
PE=3 SV=1
Length = 201
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +T+ TL+ KG + + +K
Sbjct: 142 QRSKRLVQNSIASSDPGKLPKHLTIDTLQYKGLVKKILDRK 182
>sp|A1E9S6|RR4_SORBI 30S ribosomal protein S4, chloroplastic OS=Sorghum bicolor GN=rps4
PE=3 SV=1
Length = 201
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +TV TL+ KG + + +K
Sbjct: 142 QRSKRLVQNYIASSDPGKLPKHLTVDTLQYKGLVKKILDRK 182
>sp|Q6ENW1|RR4_SACOF 30S ribosomal protein S4, chloroplastic OS=Saccharum officinarum
GN=rps4 PE=3 SV=1
Length = 201
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +TV TL+ KG + + +K
Sbjct: 142 QRSKRLVQNYIASSDPGKLPKHLTVDTLQYKGLVKKILDRK 182
>sp|Q6L397|RR4_SACHY 30S ribosomal protein S4, chloroplastic OS=Saccharum hybrid GN=rps4
PE=3 SV=1
Length = 201
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +TV TL+ KG + + +K
Sbjct: 142 QRSKRLVQNYIASSDPGKLPKHLTVDTLQYKGLVKKILDRK 182
>sp|P02355|RR4_MAIZE 30S ribosomal protein S4, chloroplastic OS=Zea mays GN=rps4 PE=3
SV=1
Length = 201
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +TV TL+ KG + + +K
Sbjct: 142 QRSKRLVQNYIASSDPGKLPKHLTVDTLQYKGLVKKILDRK 182
>sp|P69653|RR4_TRIDA 30S ribosomal protein S4, chloroplastic (Fragment) OS=Tripsacum
dactyloides GN=rps4 PE=3 SV=1
Length = 196
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +TV TL+ KG + + +K
Sbjct: 142 QRSKRLVQNYIASSDPGKLPKHLTVDTLQYKGLVKKILDRK 182
>sp|P69631|RR4_BOTIS 30S ribosomal protein S4, chloroplastic (Fragment) OS=Bothriochloa
ischaemum GN=rps4 PE=3 SV=1
Length = 196
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +TV TL+ KG + + +K
Sbjct: 142 QRSKRLVQNYIASSDPGKLPKHLTVDTLQYKGLVKKILDRK 182
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2
Length = 623
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 2 VSREHKKAAALHEKLQLLRSI-TNSHALSKTSIIVDASNYIEELKQKV 48
V E ++ L+++ LR++ N + K S++ DA YI ELK KV
Sbjct: 454 VEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKV 501
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2
SV=1
Length = 248
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 5 EHKKAAALHEKLQLLRSIT-NSHALSKTSIIVDASNYIEELKQKVERLNRDIENGQTSSD 63
E + L+++L LRS+ N + K SII DA +YIE L+ + ++L +I + S+
Sbjct: 60 ERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELE-STP 118
Query: 64 PNALPIQVTVKTLEKGFMINVFSKK 88
++L K ++ ++ V SKK
Sbjct: 119 KSSLSFS---KDFDRDLLVPVTSKK 140
>sp|O81900|DYT1_ARATH Transcription factor DYSFUNCTIONAL TAPETUM 1 OS=Arabidopsis
thaliana GN=DYT1 PE=2 SV=1
Length = 207
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 37/176 (21%)
Query: 5 EHKKAAALHEKLQLLRS----ITNSHALSKTSIIVDASNYIEELKQKVERL--------- 51
E ++ LH +L LRS +TN ++K SI+ DA YI EL+ V+ L
Sbjct: 37 ERRRREKLHCRLMALRSHVPIVTN---MTKASIVEDAITYIGELQNNVKNLLETFHEMEE 93
Query: 52 -NRDIENGQT---------SSDPN----ALPIQVTV---KTLEKGFMINVFSKKSCPGLL 94
+I+ QT +SD N L I+ V K E+ F + + ++K G+
Sbjct: 94 APPEIDEEQTDPMIKPEVETSDLNEEMKKLGIEENVQLCKIGERKFWLKIITEKR-DGIF 152
Query: 95 VSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIRN 150
+E L +++ +S T + I + Q E D K LL+V+R+
Sbjct: 153 TKFMEVMRFLGFEIID--ISLTTSNGAILISASVQTQ-ELCDVEQTKDFLLEVMRS 205
>sp|Q9LUK7|BH028_ARATH Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2
SV=1
Length = 511
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 2 VSREHKKAAALHEKLQLLRSI-TNSHALSKTSIIVDASNYIEELKQKVE 49
V E + L+ + LR++ N + KTS++ DA YI ELK K E
Sbjct: 345 VEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAE 393
>sp|P69636|RR4_BRASY 30S ribosomal protein S4, chloroplastic (Fragment) OS=Brachypodium
sylvaticum GN=rps4 PE=3 SV=1
Length = 196
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNSIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P69635|RR4_BRAPI 30S ribosomal protein S4, chloroplastic (Fragment) OS=Brachypodium
pinnatum GN=rps4 PE=3 SV=1
Length = 196
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNSIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|Q54KV6|GPA3_DICDI Guanine nucleotide-binding protein alpha-3 subunit OS=Dictyostelium
discoideum GN=gpaC PE=3 SV=1
Length = 570
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 12 LHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERLNRDI----ENGQTSSDPNAL 67
LHE L L SI N KTSII+ N I+ ++K++R + +I NG S + ++
Sbjct: 457 LHESLNLFDSICNDSTFPKTSIIL-FLNKIDLFREKLKRTSINICFPDYNGDQSYEKSSN 515
Query: 68 PIQVTVKTLEKG 79
I+ + +KG
Sbjct: 516 YIKNNFLSKKKG 527
>sp|P36464|RR4_LYGSP 30S ribosomal protein S4, chloroplastic (Fragment) OS=Lygeum
spartum GN=rps4 PE=3 SV=1
Length = 196
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNSIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P36467|RR4_PENVI 30S ribosomal protein S4, chloroplastic (Fragment) OS=Pennisetum
villosum GN=rps4 PE=3 SV=1
Length = 196
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 49 ERLNRDIENGQTSSDPNALPIQVTVKTLE-KGFMINVFSKK 88
+R R ++N SSDP LP +TV TL+ KG + + +K
Sbjct: 142 QRSKRLVQNSIASSDPANLPKHLTVDTLQYKGLVKKILDRK 182
>sp|P36465|RR4_MELAL 30S ribosomal protein S4, chloroplastic (Fragment) OS=Melica
altissima GN=rps4 PE=3 SV=1
Length = 196
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNSIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P36451|RR4_BROER 30S ribosomal protein S4, chloroplastic (Fragment) OS=Bromus
erectus GN=rps4 PE=3 SV=1
Length = 196
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +TV TLE ++N + GL ++ L E
Sbjct: 148 VQNYIASSDPGKLPKHLTVDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P36466|RR4_MELUN 30S ribosomal protein S4, chloroplastic (Fragment) OS=Melica
uniflora GN=rps4 PE=3 SV=1
Length = 196
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNSIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|B1VMC3|PURA_STRGG Adenylosuccinate synthetase OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=purA PE=3 SV=1
Length = 427
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 5 EHKKAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVER----LNRDIENGQ 59
E K AAL +K QLL + N A+ ++ D Y E++K V LN I+ G+
Sbjct: 157 EQKVEAALEQKNQLLAKVFNRRAIEAGKVVEDMLQYAEQIKPFVADTTLILNDAIDEGK 215
>sp|P36447|RR4_ANTOD 30S ribosomal protein S4, chloroplastic (Fragment) OS=Anthoxanthum
odoratum GN=rps4 PE=3 SV=1
Length = 196
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
+ N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VRNSIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|A1EA10|RR4_AGRST 30S ribosomal protein S4, chloroplastic OS=Agrostis stolonifera
GN=rps4 PE=3 SV=1
Length = 201
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNYIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P69648|RR4_PHLPR 30S ribosomal protein S4, chloroplastic (Fragment) OS=Phleum
pratense GN=rps4 PE=3 SV=1
Length = 196
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNYIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P69637|RR4_CALEP 30S ribosomal protein S4, chloroplastic (Fragment) OS=Calamagrostis
epigejos GN=rps4 PE=3 SV=1
Length = 196
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNYIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|A1E9J3|RR4_HORVU 30S ribosomal protein S4, chloroplastic OS=Hordeum vulgare GN=rps4
PE=3 SV=1
Length = 201
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNYIASSDPGKLPSHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P69644|RR4_HORMA 30S ribosomal protein S4, chloroplastic (Fragment) OS=Hordeum
marinum GN=rps4 PE=3 SV=1
Length = 196
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNYIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P69641|RR4_ELYCA 30S ribosomal protein S4, chloroplastic (Fragment) OS=Elymus
canadensis GN=rps4 PE=3 SV=1
Length = 196
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNYIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P69645|RR4_LAMAU 30S ribosomal protein S4, chloroplastic (Fragment) OS=Lamarckia
aurea GN=rps4 PE=3 SV=1
Length = 196
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNFIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P69638|RR4_CINLA 30S ribosomal protein S4, chloroplastic (Fragment) OS=Cinna
latifolia GN=rps4 PE=3 SV=1
Length = 196
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNFIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P69640|RR4_AVEFL 30S ribosomal protein S4, chloroplastic (Fragment) OS=Avenella
flexuosa GN=rps4 PE=3 SV=1
Length = 196
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNFIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
>sp|P69630|RR4_ALOPR 30S ribosomal protein S4, chloroplastic (Fragment) OS=Alopecurus
pratensis GN=rps4 PE=3 SV=1
Length = 196
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 IENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFE 102
++N SSDP LP +T+ TLE ++N + GL ++ L E
Sbjct: 148 VQNFIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVE 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,636,725
Number of Sequences: 539616
Number of extensions: 1851291
Number of successful extensions: 6249
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 6207
Number of HSP's gapped (non-prelim): 86
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)