Query 031518
Match_columns 158
No_of_seqs 120 out of 754
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 15:15:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00353 HLH helix loop heli 99.4 1.7E-13 3.7E-18 86.3 4.9 47 3-49 2-52 (53)
2 cd00083 HLH Helix-loop-helix d 99.4 8.5E-13 1.9E-17 84.7 4.7 46 3-48 10-59 (60)
3 PF00010 HLH: Helix-loop-helix 99.3 2.6E-12 5.7E-17 81.8 4.4 43 3-45 7-55 (55)
4 cd04897 ACT_ACR_3 ACT domain-c 98.8 8.5E-08 1.8E-12 65.2 9.5 67 81-149 3-73 (75)
5 cd04895 ACT_ACR_1 ACT domain-c 98.8 9.1E-08 2E-12 64.6 9.4 66 81-148 3-68 (72)
6 cd04927 ACT_ACR-like_2 Second 98.7 1.1E-07 2.5E-12 64.3 9.0 68 80-149 1-72 (76)
7 cd04900 ACT_UUR-like_1 ACT dom 98.7 4.8E-07 1E-11 60.3 10.3 68 80-149 2-70 (73)
8 cd04896 ACT_ACR-like_3 ACT dom 98.6 4.6E-07 1E-11 61.6 9.3 66 81-149 2-73 (75)
9 cd04925 ACT_ACR_2 ACT domain-c 98.4 4.9E-06 1.1E-10 55.8 9.9 67 81-148 2-72 (74)
10 cd04928 ACT_TyrKc Uncharacteri 98.4 5E-06 1.1E-10 55.5 9.8 64 81-148 3-67 (68)
11 KOG1318 Helix loop helix trans 98.2 2.6E-06 5.7E-11 74.1 6.1 48 3-50 239-291 (411)
12 cd04899 ACT_ACR-UUR-like_2 C-t 98.1 4.7E-05 1E-09 49.4 9.7 48 81-129 2-49 (70)
13 cd04926 ACT_ACR_4 C-terminal 98.1 5.6E-05 1.2E-09 50.3 9.3 67 80-149 2-68 (72)
14 KOG1319 bHLHZip transcription 98.0 8.4E-06 1.8E-10 64.2 5.2 55 3-57 68-130 (229)
15 PRK05007 PII uridylyl-transfer 98.0 7E-05 1.5E-09 71.1 10.8 69 80-150 809-880 (884)
16 KOG4304 Transcriptional repres 97.9 5.9E-06 1.3E-10 67.9 2.3 46 5-50 40-94 (250)
17 PRK00275 glnD PII uridylyl-tra 97.9 0.00015 3.2E-09 69.0 11.7 81 71-153 804-890 (895)
18 KOG3561 Aryl-hydrocarbon recep 97.8 1.9E-05 4.1E-10 73.8 4.1 45 3-47 26-75 (803)
19 PRK04374 PII uridylyl-transfer 97.8 0.00035 7.5E-09 66.4 12.0 80 67-148 782-866 (869)
20 PRK01759 glnD PII uridylyl-tra 97.7 0.00034 7.3E-09 66.3 10.4 67 80-148 784-853 (854)
21 PRK03059 PII uridylyl-transfer 97.6 0.00051 1.1E-08 65.2 10.6 74 71-148 776-854 (856)
22 PRK03381 PII uridylyl-transfer 97.6 0.00073 1.6E-08 63.5 11.3 73 71-147 697-771 (774)
23 PRK05092 PII uridylyl-transfer 97.6 0.00096 2.1E-08 63.8 12.1 79 70-150 832-916 (931)
24 PF01842 ACT: ACT domain; Int 97.5 0.00093 2E-08 42.3 8.0 62 80-147 1-64 (66)
25 PRK03381 PII uridylyl-transfer 97.5 0.00086 1.9E-08 63.0 10.3 78 71-150 590-668 (774)
26 cd04873 ACT_UUR-ACR-like ACT d 97.5 0.0024 5.2E-08 40.8 9.6 47 81-128 2-48 (70)
27 KOG3960 Myogenic helix-loop-he 97.4 0.00029 6.2E-09 57.8 5.6 51 4-54 125-178 (284)
28 PF13740 ACT_6: ACT domain; PD 97.4 0.0025 5.3E-08 42.7 9.3 67 79-150 2-68 (76)
29 TIGR01693 UTase_glnD [Protein- 97.4 0.0018 3.8E-08 61.3 10.8 79 68-148 766-849 (850)
30 KOG0561 bHLH transcription fac 97.3 0.00014 3.1E-09 61.0 2.9 49 3-51 66-117 (373)
31 TIGR01693 UTase_glnD [Protein- 97.3 0.0017 3.7E-08 61.4 10.5 71 78-150 667-742 (850)
32 PRK05007 PII uridylyl-transfer 97.3 0.0031 6.7E-08 60.1 11.7 78 71-150 691-774 (884)
33 PRK01759 glnD PII uridylyl-tra 97.3 0.0026 5.5E-08 60.4 10.9 77 71-149 667-749 (854)
34 KOG2483 Upstream transcription 97.1 0.00081 1.8E-08 54.8 5.1 50 4-53 66-119 (232)
35 PRK00275 glnD PII uridylyl-tra 97.1 0.0043 9.4E-08 59.2 10.5 70 78-149 703-778 (895)
36 cd04893 ACT_GcvR_1 ACT domains 97.1 0.01 2.3E-07 39.8 9.5 67 80-151 2-68 (77)
37 cd04875 ACT_F4HF-DF N-terminal 97.1 0.0092 2E-07 39.3 9.0 67 82-150 2-69 (74)
38 PRK03059 PII uridylyl-transfer 97.0 0.0056 1.2E-07 58.2 10.5 79 67-149 665-750 (856)
39 COG2844 GlnD UTP:GlnB (protein 97.0 0.0033 7.2E-08 59.1 8.7 75 71-148 781-857 (867)
40 PRK04374 PII uridylyl-transfer 97.0 0.0054 1.2E-07 58.4 9.9 72 78-150 689-761 (869)
41 PRK00194 hypothetical protein; 96.9 0.0078 1.7E-07 41.2 8.0 68 79-149 3-70 (90)
42 cd04869 ACT_GcvR_2 ACT domains 96.9 0.021 4.7E-07 37.8 9.6 67 82-152 2-74 (81)
43 cd04872 ACT_1ZPV ACT domain pr 96.9 0.0096 2.1E-07 40.7 7.9 69 80-151 2-70 (88)
44 PRK05092 PII uridylyl-transfer 96.8 0.01 2.3E-07 56.8 10.7 77 71-149 722-805 (931)
45 KOG4029 Transcription factor H 96.7 0.0016 3.6E-08 52.5 3.6 52 3-54 115-171 (228)
46 PF13291 ACT_4: ACT domain; PD 96.6 0.055 1.2E-06 36.0 10.2 48 80-128 7-56 (80)
47 cd04870 ACT_PSP_1 CT domains f 96.5 0.037 7.9E-07 36.7 8.5 65 82-150 2-66 (75)
48 PLN03217 transcription factor 96.0 0.014 3E-07 40.5 4.4 48 10-57 20-74 (93)
49 cd04887 ACT_MalLac-Enz ACT_Mal 95.9 0.1 2.2E-06 33.8 8.1 46 82-128 2-48 (74)
50 cd04886 ACT_ThrD-II-like C-ter 95.8 0.098 2.1E-06 33.0 7.6 34 82-116 1-34 (73)
51 COG2844 GlnD UTP:GlnB (protein 95.6 0.073 1.6E-06 50.4 8.7 62 73-136 678-740 (867)
52 cd04894 ACT_ACR-like_1 ACT dom 95.5 0.1 2.3E-06 34.4 6.9 66 81-147 2-67 (69)
53 cd02116 ACT ACT domains are co 95.4 0.15 3.3E-06 29.2 6.9 35 82-117 1-35 (60)
54 cd04880 ACT_AAAH-PDT-like ACT 95.3 0.21 4.5E-06 32.7 8.0 46 83-129 3-49 (75)
55 cd04881 ACT_HSDH-Hom ACT_HSDH_ 95.2 0.26 5.7E-06 31.4 8.3 36 80-116 1-36 (79)
56 cd04876 ACT_RelA-SpoT ACT dom 95.1 0.2 4.3E-06 30.3 7.1 35 82-117 1-35 (71)
57 PRK13010 purU formyltetrahydro 95.0 0.18 3.8E-06 42.4 8.5 70 79-151 9-81 (289)
58 cd04888 ACT_PheB-BS C-terminal 94.8 0.22 4.7E-06 32.3 7.1 46 81-127 2-48 (76)
59 PRK13011 formyltetrahydrofolat 94.6 0.38 8.2E-06 40.3 9.7 68 79-151 7-77 (286)
60 PRK04435 hypothetical protein; 94.6 0.31 6.8E-06 36.8 8.4 52 76-128 66-118 (147)
61 TIGR00655 PurU formyltetrahydr 94.6 0.33 7.1E-06 40.6 9.1 62 81-146 2-66 (280)
62 PRK06027 purU formyltetrahydro 94.3 0.51 1.1E-05 39.4 9.7 71 78-152 5-78 (286)
63 cd04877 ACT_TyrR N-terminal AC 94.2 0.28 6.1E-06 32.2 6.5 37 81-119 2-38 (74)
64 KOG3559 Transcriptional regula 94.0 0.046 1E-06 48.1 2.9 41 4-44 8-53 (598)
65 cd04883 ACT_AcuB C-terminal AC 94.0 0.78 1.7E-05 29.3 8.2 60 80-146 2-63 (72)
66 PRK08577 hypothetical protein; 93.9 0.8 1.7E-05 33.8 9.1 49 79-128 56-106 (136)
67 KOG3558 Hypoxia-inducible fact 93.6 0.043 9.4E-07 50.9 2.1 39 4-42 53-96 (768)
68 cd04909 ACT_PDH-BS C-terminal 93.5 0.63 1.4E-05 29.7 7.1 36 80-116 2-37 (69)
69 cd04889 ACT_PDH-BS-like C-term 93.2 0.54 1.2E-05 28.9 6.2 44 82-126 1-45 (56)
70 cd04905 ACT_CM-PDT C-terminal 93.0 1.5 3.3E-05 29.0 8.7 59 82-144 4-63 (80)
71 cd04874 ACT_Af1403 N-terminal 93.0 0.74 1.6E-05 28.8 6.9 36 81-117 2-37 (72)
72 KOG2588 Predicted DNA-binding 92.9 0.044 9.5E-07 52.3 1.1 51 5-55 284-336 (953)
73 cd04903 ACT_LSD C-terminal ACT 92.8 1.1 2.5E-05 27.7 7.5 34 81-115 1-34 (71)
74 cd04882 ACT_Bt0572_2 C-termina 92.6 0.95 2.1E-05 28.1 6.8 35 82-117 2-36 (65)
75 cd04884 ACT_CBS C-terminal ACT 92.5 1.1 2.4E-05 28.9 7.3 34 82-116 2-35 (72)
76 cd04878 ACT_AHAS N-terminal AC 92.4 1.5 3.3E-05 27.2 7.7 35 81-116 2-36 (72)
77 KOG3560 Aryl-hydrocarbon recep 92.4 0.094 2E-06 47.6 2.5 37 7-43 35-76 (712)
78 COG3830 ACT domain-containing 92.1 0.37 8.1E-06 33.8 4.7 69 80-151 4-72 (90)
79 cd04879 ACT_3PGDH-like ACT_3PG 92.0 0.85 1.8E-05 28.2 6.1 44 82-126 2-47 (71)
80 PRK00227 glnD PII uridylyl-tra 91.5 1.4 3.1E-05 41.3 9.2 70 77-149 544-614 (693)
81 cd04908 ACT_Bt0572_1 N-termina 91.1 0.92 2E-05 28.9 5.6 37 81-118 3-39 (66)
82 cd04904 ACT_AAAH ACT domain of 91.0 2.8 6E-05 27.6 8.0 57 83-145 4-61 (74)
83 PRK11152 ilvM acetolactate syn 89.6 4.2 9E-05 27.5 7.9 62 80-147 4-67 (76)
84 cd04931 ACT_PAH ACT domain of 89.6 4.5 9.8E-05 28.0 8.4 62 80-146 15-77 (90)
85 TIGR00119 acolac_sm acetolacta 89.3 2.4 5.2E-05 32.5 7.4 64 81-149 3-68 (157)
86 COG0788 PurU Formyltetrahydrof 89.3 2.6 5.7E-05 35.3 8.0 70 78-151 6-78 (287)
87 PRK11589 gcvR glycine cleavage 89.1 1.3 2.8E-05 35.0 6.0 65 78-147 7-71 (190)
88 PRK07334 threonine dehydratase 89.1 2.7 5.8E-05 36.5 8.4 48 80-128 327-379 (403)
89 PRK06737 acetolactate synthase 88.7 2.7 5.8E-05 28.5 6.5 46 80-126 3-50 (76)
90 PRK11895 ilvH acetolactate syn 88.2 3.4 7.3E-05 31.9 7.6 46 80-126 3-50 (161)
91 PF05088 Bac_GDH: Bacterial NA 87.6 4.3 9.4E-05 41.4 9.7 70 79-150 489-563 (1528)
92 CHL00100 ilvH acetohydroxyacid 86.2 6.3 0.00014 30.8 8.1 68 80-152 3-72 (174)
93 PF13710 ACT_5: ACT domain; PD 86.0 4.1 8.9E-05 26.2 6.0 52 91-146 3-56 (63)
94 PRK13562 acetolactate synthase 85.4 4.4 9.6E-05 28.0 6.2 46 81-127 4-51 (84)
95 cd04901 ACT_3PGDH C-terminal A 84.1 1.6 3.4E-05 27.5 3.3 41 83-124 3-43 (69)
96 cd04929 ACT_TPH ACT domain of 83.9 10 0.00022 25.2 7.6 56 84-145 5-61 (74)
97 cd04902 ACT_3PGDH-xct C-termin 83.8 3.8 8.3E-05 25.8 5.1 43 83-126 3-47 (73)
98 KOG4447 Transcription factor T 83.4 0.7 1.5E-05 35.6 1.6 43 4-46 85-130 (173)
99 PRK11589 gcvR glycine cleavage 80.7 17 0.00038 28.6 8.7 70 80-151 96-169 (190)
100 PF02120 Flg_hook: Flagellar h 79.0 9.4 0.0002 25.2 5.9 47 70-116 28-79 (85)
101 COG4747 ACT domain-containing 78.8 9 0.0002 28.5 6.0 40 81-121 5-44 (142)
102 KOG3910 Helix loop helix trans 77.9 2.4 5.2E-05 38.4 3.3 48 4-51 533-585 (632)
103 cd04885 ACT_ThrD-I Tandem C-te 77.9 15 0.00033 23.4 6.7 32 83-116 2-33 (68)
104 PRK10872 relA (p)ppGpp synthet 77.4 14 0.00029 35.2 8.3 48 80-128 667-716 (743)
105 TIGR00691 spoT_relA (p)ppGpp s 77.0 24 0.00052 33.2 9.7 48 80-128 611-659 (683)
106 PRK11092 bifunctional (p)ppGpp 76.4 25 0.00055 33.2 9.7 48 80-128 627-675 (702)
107 KOG3898 Transcription factor N 75.2 1.7 3.7E-05 35.8 1.6 45 3-47 78-126 (254)
108 cd04930 ACT_TH ACT domain of t 75.0 20 0.00043 25.9 7.0 49 80-129 42-91 (115)
109 PRK11899 prephenate dehydratas 74.0 26 0.00057 29.2 8.4 64 80-147 195-259 (279)
110 PF02344 Myc-LZ: Myc leucine z 73.4 3.8 8.3E-05 23.2 2.2 17 5-21 13-29 (32)
111 PRK08178 acetolactate synthase 73.4 25 0.00053 25.0 6.9 47 79-126 8-56 (96)
112 KOG4447 Transcription factor T 72.6 5.2 0.00011 30.9 3.5 43 5-47 30-78 (173)
113 cd04932 ACT_AKiii-LysC-EC_1 AC 70.9 27 0.00059 23.0 8.1 60 87-154 12-71 (75)
114 PRK14627 hypothetical protein; 69.2 30 0.00065 24.5 6.6 44 35-89 4-47 (100)
115 PRK14626 hypothetical protein; 66.3 36 0.00079 24.5 6.7 25 34-58 7-31 (110)
116 PRK00227 glnD PII uridylyl-tra 65.1 13 0.00027 35.1 5.1 59 80-148 632-690 (693)
117 PRK14623 hypothetical protein; 64.7 40 0.00087 24.2 6.6 25 34-58 3-27 (106)
118 PRK14625 hypothetical protein; 64.4 40 0.00087 24.3 6.6 25 34-58 4-28 (109)
119 PRK14622 hypothetical protein; 63.4 42 0.00091 23.9 6.5 45 34-89 3-47 (103)
120 TIGR00103 DNA_YbaB_EbfC DNA-bi 63.3 43 0.00094 23.6 6.6 25 34-58 7-31 (102)
121 KOG4395 Transcription factor A 63.1 11 0.00023 31.4 3.8 46 4-49 181-230 (285)
122 PF13840 ACT_7: ACT domain ; P 62.4 18 0.0004 23.0 4.2 32 80-112 7-42 (65)
123 COG0077 PheA Prephenate dehydr 61.3 59 0.0013 27.4 7.9 62 81-146 196-258 (279)
124 PRK08198 threonine dehydratase 60.7 74 0.0016 27.4 8.8 36 79-115 327-362 (404)
125 PRK06382 threonine dehydratase 60.6 55 0.0012 28.5 8.0 35 79-114 330-364 (406)
126 PRK14621 hypothetical protein; 59.8 53 0.0012 23.7 6.6 45 34-89 6-50 (111)
127 TIGR01127 ilvA_1Cterm threonin 58.9 78 0.0017 27.0 8.6 34 80-114 306-339 (380)
128 cd04937 ACT_AKi-DapG-BS_2 ACT 58.4 32 0.0007 21.5 4.8 20 91-110 15-34 (64)
129 PRK14629 hypothetical protein; 58.3 57 0.0012 23.1 6.4 23 36-58 7-29 (99)
130 cd04922 ACT_AKi-HSDH-ThrA_2 AC 56.3 44 0.00094 20.3 7.5 34 81-115 3-39 (66)
131 PRK14624 hypothetical protein; 56.2 67 0.0015 23.4 6.6 25 34-58 8-32 (115)
132 PRK00153 hypothetical protein; 56.2 67 0.0014 22.6 6.5 25 34-58 5-29 (104)
133 PRK03762 hypothetical protein; 55.5 72 0.0016 22.7 6.6 44 35-89 8-51 (103)
134 PRK10622 pheA bifunctional cho 53.6 1E+02 0.0022 26.9 8.5 60 84-147 302-362 (386)
135 cd04890 ACT_AK-like_1 ACT doma 53.5 50 0.0011 20.2 5.3 23 91-113 14-36 (62)
136 cd04892 ACT_AK-like_2 ACT doma 52.5 47 0.001 19.5 7.4 34 81-115 2-38 (65)
137 cd04918 ACT_AK1-AT_2 ACT domai 52.4 56 0.0012 20.5 6.0 26 91-116 14-39 (65)
138 PRK11898 prephenate dehydratas 51.4 1.1E+02 0.0024 25.4 8.1 63 80-146 197-261 (283)
139 cd04912 ACT_AKiii-LysC-EC-like 50.5 67 0.0014 20.7 7.7 22 91-112 15-36 (75)
140 PRK00587 hypothetical protein; 50.3 89 0.0019 22.1 6.5 25 34-58 3-27 (99)
141 cd04916 ACT_AKiii-YclM-BS_2 AC 49.4 58 0.0013 19.7 7.4 58 82-148 4-64 (66)
142 PF09849 DUF2076: Uncharacteri 48.5 54 0.0012 27.1 5.6 53 1-56 1-72 (247)
143 cd04898 ACT_ACR-like_4 ACT dom 48.1 51 0.0011 22.5 4.5 38 86-123 6-45 (77)
144 COG4492 PheB ACT domain-contai 47.6 1.2E+02 0.0027 23.0 7.3 64 79-145 72-136 (150)
145 PF04508 Pox_A_type_inc: Viral 47.1 27 0.00058 18.4 2.4 17 41-57 3-19 (23)
146 cd04915 ACT_AK-Ectoine_2 ACT d 45.9 76 0.0017 20.1 5.6 26 91-116 15-40 (66)
147 cd04868 ACT_AK-like ACT domain 43.6 63 0.0014 18.5 5.6 24 91-114 14-37 (60)
148 COG0440 IlvH Acetolactate synt 43.4 1.1E+02 0.0024 23.7 6.3 71 81-155 6-77 (163)
149 COG0317 SpoT Guanosine polypho 42.5 78 0.0017 30.1 6.3 38 80-118 628-665 (701)
150 PF11619 P53_C: Transcription 41.7 48 0.001 22.0 3.5 33 70-103 6-39 (71)
151 COG3978 Acetolactate synthase 40.7 1.2E+02 0.0026 20.9 7.7 63 80-148 4-68 (86)
152 cd04919 ACT_AK-Hom3_2 ACT doma 40.4 86 0.0019 19.1 7.5 25 91-115 15-39 (66)
153 COG2716 GcvR Glycine cleavage 40.3 1.2E+02 0.0027 23.8 6.2 66 79-147 92-162 (176)
154 COG2061 ACT-domain-containing 39.6 44 0.00094 25.9 3.5 36 80-116 6-41 (170)
155 cd04923 ACT_AK-LysC-DapG-like_ 39.2 84 0.0018 18.6 4.6 23 91-113 14-36 (63)
156 cd04920 ACT_AKiii-DAPDC_2 ACT 38.5 70 0.0015 20.0 3.9 21 91-111 14-34 (63)
157 PRK08526 threonine dehydratase 38.1 2.3E+02 0.005 24.7 8.3 37 79-116 326-362 (403)
158 PRK03094 hypothetical protein; 37.8 86 0.0019 21.5 4.4 50 94-147 10-78 (80)
159 PRK14628 hypothetical protein; 37.5 1.6E+02 0.0035 21.5 6.5 45 34-89 21-65 (118)
160 PRK13847 conjugal transfer pro 37.3 57 0.0012 21.9 3.4 41 1-44 5-48 (71)
161 smart00338 BRLZ basic region l 37.2 35 0.00076 21.7 2.4 41 5-57 4-44 (65)
162 PF14992 TMCO5: TMCO5 family 37.1 46 0.00099 28.1 3.6 28 29-56 138-168 (280)
163 PF00170 bZIP_1: bZIP transcri 36.1 37 0.0008 21.5 2.3 19 38-56 25-43 (64)
164 PRK06349 homoserine dehydrogen 35.6 2.1E+02 0.0046 25.1 7.7 35 79-114 348-382 (426)
165 cd04906 ACT_ThrD-I_1 First of 34.5 1.4E+02 0.003 19.8 7.4 31 80-113 2-32 (85)
166 PRK14126 cell division protein 34.4 1.1E+02 0.0025 20.8 4.7 46 10-56 34-82 (85)
167 PLN02317 arogenate dehydratase 34.2 2.6E+02 0.0057 24.6 7.9 33 85-118 289-321 (382)
168 PF14197 Cep57_CLD_2: Centroso 33.9 72 0.0016 21.0 3.5 26 32-57 40-65 (69)
169 COG4747 ACT domain-containing 33.6 59 0.0013 24.3 3.3 26 83-109 73-98 (142)
170 PRK13581 D-3-phosphoglycerate 33.2 2.5E+02 0.0055 25.3 8.0 49 77-126 450-500 (526)
171 cd04924 ACT_AK-Arch_2 ACT doma 32.8 1.1E+02 0.0025 18.3 7.4 25 91-115 15-39 (66)
172 PF14689 SPOB_a: Sensor_kinase 32.5 57 0.0012 20.7 2.8 41 5-51 16-56 (62)
173 COG3474 Cytochrome c2 [Energy 32.4 54 0.0012 24.7 3.0 35 10-44 91-130 (135)
174 PF04420 CHD5: CHD5-like prote 32.4 1.3E+02 0.0028 22.8 5.2 45 4-58 41-85 (161)
175 PF03698 UPF0180: Uncharacteri 32.1 1.1E+02 0.0024 20.9 4.3 52 93-148 9-79 (80)
176 COG1076 DjlA DnaJ-domain-conta 32.0 32 0.0007 26.4 1.8 48 9-56 124-171 (174)
177 cd04933 ACT_AK1-AT_1 ACT domai 31.8 1.6E+02 0.0034 19.6 7.8 33 81-113 3-37 (78)
178 cd04913 ACT_AKii-LysC-BS-like_ 31.0 1.3E+02 0.0028 18.3 7.5 26 87-113 10-35 (75)
179 PRK10820 DNA-binding transcrip 30.7 86 0.0019 28.3 4.6 36 81-117 2-37 (520)
180 PF06005 DUF904: Protein of un 30.3 73 0.0016 21.2 3.1 22 34-55 13-34 (72)
181 TIGR00719 sda_beta L-serine de 29.6 2.8E+02 0.0061 21.8 9.6 63 73-141 142-206 (208)
182 TIGR01268 Phe4hydrox_tetr phen 29.5 3.8E+02 0.0083 24.1 8.3 49 80-129 17-66 (436)
183 TIGR01270 Trp_5_monoox tryptop 29.5 2.2E+02 0.0048 25.8 6.8 49 80-129 32-82 (464)
184 PRK15385 magnesium transport p 29.4 3.1E+02 0.0068 22.3 8.4 38 79-117 142-181 (225)
185 cd04934 ACT_AK-Hom3_1 CT domai 28.7 1.7E+02 0.0037 19.0 5.7 23 91-113 15-37 (73)
186 cd04921 ACT_AKi-HSDH-ThrA-like 28.5 1.6E+02 0.0035 18.6 5.8 24 91-114 15-38 (80)
187 PF09006 Surfac_D-trimer: Lung 27.6 57 0.0012 20.0 2.0 18 41-58 1-18 (46)
188 PRK06635 aspartate kinase; Rev 27.4 3.1E+02 0.0067 23.5 7.3 39 79-117 262-300 (404)
189 TIGR02263 benz_CoA_red_C benzo 27.3 3.4E+02 0.0073 23.4 7.5 89 11-119 176-271 (380)
190 smart00842 FtsA Cell division 27.3 2.4E+02 0.0052 21.4 6.0 58 95-152 50-112 (187)
191 PF06305 DUF1049: Protein of u 26.9 74 0.0016 20.0 2.6 19 40-58 49-67 (68)
192 cd04936 ACT_AKii-LysC-BS-like_ 26.1 1.5E+02 0.0032 17.5 4.6 23 91-113 14-36 (63)
193 TIGR00656 asp_kin_monofn aspar 25.8 4.2E+02 0.0092 22.6 8.7 36 77-113 258-296 (401)
194 PF02465 FliD_N: Flagellar hoo 25.5 1.7E+02 0.0037 19.9 4.5 43 1-51 13-55 (99)
195 PRK08210 aspartate kinase I; R 25.4 3.2E+02 0.007 23.5 7.1 37 78-114 270-306 (403)
196 COG3388 Predicted transcriptio 25.4 1.2E+02 0.0026 21.6 3.5 41 17-57 47-91 (101)
197 PRK08818 prephenate dehydrogen 24.9 2.8E+02 0.006 24.1 6.5 48 80-129 296-344 (370)
198 cd07289 PX_PI3K_C2_alpha The p 24.7 76 0.0017 22.9 2.6 26 3-29 74-100 (109)
199 PF15235 GRIN_C: G protein-reg 24.1 79 0.0017 23.9 2.6 24 32-57 66-89 (137)
200 cd06884 PX_PI3K_C2_68D The pho 23.9 71 0.0015 22.9 2.3 24 4-28 77-101 (111)
201 PRK14637 hypothetical protein; 23.8 3.2E+02 0.007 20.6 7.1 55 91-149 8-66 (151)
202 PRK07431 aspartate kinase; Pro 23.3 5.7E+02 0.012 23.3 8.8 65 73-148 342-409 (587)
203 cd04917 ACT_AKiii-LysC-EC_2 AC 23.2 1.9E+02 0.0041 17.7 4.4 18 91-108 15-32 (64)
204 PRK08210 aspartate kinase I; R 22.9 4.9E+02 0.011 22.4 8.6 63 75-148 335-400 (403)
205 PF07901 DUF1672: Protein of u 22.8 3.6E+02 0.0078 22.7 6.5 49 36-92 26-77 (277)
206 PF06345 Drf_DAD: DRF Autoregu 22.8 86 0.0019 14.6 1.6 12 92-103 1-12 (15)
207 cd04935 ACT_AKiii-DAPDC_1 ACT 22.8 2.3E+02 0.0049 18.4 8.0 23 91-113 15-37 (75)
208 PF12180 EABR: TSG101 and ALIX 22.4 1E+02 0.0022 17.9 2.2 13 39-51 23-35 (35)
209 PRK06291 aspartate kinase; Pro 22.3 5.5E+02 0.012 22.7 8.6 67 73-148 392-461 (465)
210 PF09789 DUF2353: Uncharacteri 22.0 2.1E+02 0.0046 24.6 5.1 56 1-56 31-96 (319)
211 PF07524 Bromo_TP: Bromodomain 21.4 62 0.0013 21.2 1.5 16 93-108 60-75 (77)
212 PRK10118 flagellar hook-length 21.1 1.3E+02 0.0028 26.7 3.6 49 68-116 303-356 (408)
213 KOG1748 Acyl carrier protein/N 21.0 55 0.0012 24.5 1.2 23 23-45 105-127 (131)
214 COG3074 Uncharacterized protei 20.7 1.5E+02 0.0032 20.0 3.1 23 34-56 13-35 (79)
215 PRK09034 aspartate kinase; Rev 20.7 5.9E+02 0.013 22.5 8.4 67 73-148 379-448 (454)
216 PF12344 UvrB: Ultra-violet re 20.7 1.4E+02 0.0029 18.2 2.7 20 5-24 16-35 (44)
217 TIGR01327 PGDH D-3-phosphoglyc 20.6 4.2E+02 0.009 24.0 7.0 47 77-124 449-497 (525)
218 PF13805 Pil1: Eisosome compon 20.5 1.8E+02 0.004 24.3 4.4 37 5-54 143-180 (271)
219 PRK11020 hypothetical protein; 20.4 1.6E+02 0.0035 21.6 3.5 45 9-53 7-52 (118)
220 PRK10738 hypothetical protein; 20.0 3.2E+02 0.0069 20.0 5.2 59 95-153 50-114 (134)
No 1
>smart00353 HLH helix loop helix domain.
Probab=99.44 E-value=1.7e-13 Score=86.31 Aligned_cols=47 Identities=30% Similarity=0.507 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN----SHALSKTSIIVDASNYIEELKQKVE 49 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP----~~K~DKaSil~dAI~YIk~Lq~~v~ 49 (158)
.+||+||++||+.|..|++++| ..|+||++||.+||+||+.|+.+++
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999988 4579999999999999999999876
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.36 E-value=8.5e-13 Score=84.72 Aligned_cols=46 Identities=28% Similarity=0.481 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-C---CCCcccchHHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN-S---HALSKTSIIVDASNYIEELKQKV 48 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~---~K~DKaSil~dAI~YIk~Lq~~v 48 (158)
.+||+||.+||+.|..|++++| . .|+||++||..||+||+.|+.++
T Consensus 10 ~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 10 LRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999988 5 89999999999999999999876
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.31 E-value=2.6e-12 Score=81.79 Aligned_cols=43 Identities=30% Similarity=0.526 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-C-----CCCcccchHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN-S-----HALSKTSIIVDASNYIEELK 45 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~-----~K~DKaSil~dAI~YIk~Lq 45 (158)
..||+||.+||+.|..|+.++| . .|+||++||..||+||++||
T Consensus 7 ~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 7 ERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 5799999999999999999988 5 68999999999999999997
No 4
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.78 E-value=8.5e-08 Score=65.21 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=56.5
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCH----HHHHHHHHHHHh
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDA----HVVKQALLQVIR 149 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~----~~l~~~l~~ai~ 149 (158)
.|.|.|+.+ ||||.+|..+|-++|++|.+|.|+|.++.+.++|.+... ++..++. +.|+++|..+|.
T Consensus 3 vveV~~~DR-pGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDR-PKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCc-CcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHHHHHh
Confidence 588999999 999999999999999999999999999999999999765 4555543 356667766664
No 5
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.78 E-value=9.1e-08 Score=64.57 Aligned_cols=66 Identities=15% Similarity=0.343 Sum_probs=55.0
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
.|+|.++.+ ||+|.+|..+|..+||+|..|.|+|.++.+.++|.+... ++..++..+-.+.|.++|
T Consensus 3 viev~a~DR-pGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 3 LVKVDSARK-PGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSL 68 (72)
T ss_pred EEEEEECCc-CCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHh
Confidence 588999999 999999999999999999999999999999999999765 455665444445555444
No 6
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.74 E-value=1.1e-07 Score=64.27 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=53.9
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEe-eCCeEEEEEeeeecCCCCccC---HHHHHHHHHHHHh
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSC-TDTFSLQAIGGENEEQGETID---AHVVKQALLQVIR 149 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~v~~~~~~~~~~---~~~l~~~l~~ai~ 149 (158)
+.+.|.|+.+ ||+|.++..+|..+|++|++|.|++ .+|.++++|.+... ++...+ .+.++++|.++++
T Consensus 1 ~~~ei~~~Dr-~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 1 FLLKLFCSDR-KGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-RELLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred CEEEEEECCC-CCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHHc
Confidence 4689999999 9999999999999999999999996 79999999999643 222222 3346666666654
No 7
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.67 E-value=4.8e-07 Score=60.34 Aligned_cols=68 Identities=24% Similarity=0.438 Sum_probs=53.4
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee-CCeEEEEEeeeecCCCCccCHHHHHHHHHHHHh
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT-DTFSLQAIGGENEEQGETIDAHVVKQALLQVIR 149 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~ 149 (158)
..|.|.|+.+ ||+|.++..+|..+|++|++|.+.+. +|+++++|.+... ++...+.++-.+.+.+.|.
T Consensus 2 ~~i~v~~~Dr-~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~ 70 (73)
T cd04900 2 TEVFIYTPDR-PGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALE 70 (73)
T ss_pred EEEEEEecCC-CCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHH
Confidence 3578999999 99999999999999999999999888 6999999998643 3444544444455555543
No 8
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.62 E-value=4.6e-07 Score=61.59 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=54.9
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEE--eeCCeEEEEEeeeecCCCCccC----HHHHHHHHHHHHh
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVS--CTDTFSLQAIGGENEEQGETID----AHVVKQALLQVIR 149 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is--~~~~~~l~~~~v~~~~~~~~~~----~~~l~~~l~~ai~ 149 (158)
.|.|.|+.+ ||+|.+|..+|..+|++|..|.|+ |.++.+.++|.+ .. ++..++ .+.|+++|..++.
T Consensus 2 vlev~a~DR-pGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQ-KGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCc-ccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHHHHhc
Confidence 578999999 999999999999999999999999 999999999999 43 344453 3456677766654
No 9
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.42 E-value=4.9e-06 Score=55.77 Aligned_cols=67 Identities=28% Similarity=0.379 Sum_probs=52.8
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCcc-C---HHHHHHHHHHHH
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETI-D---AHVVKQALLQVI 148 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~-~---~~~l~~~l~~ai 148 (158)
.|+|.++.+ ||+|.+|..+|..+|++|+.|.+++.++.++.+|.+...+.+... + .+.|++.|.+++
T Consensus 2 ~~~v~~~Dr-~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDR-PGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCC-CCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 578999999 999999999999999999999999999999999998643112223 2 245566665554
No 10
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.41 E-value=5e-06 Score=55.49 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=54.9
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee-CCeEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCT-DTFSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
.|-|.|+.+ ||+|.++..+|..+||+|+.|++.+. +|+++++|.+... ..=+...+.++|++++
T Consensus 3 eI~V~~~Dr-~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~---~~~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDK-PKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW---KRGETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCC-cchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC---CccchHHHHHHHHHhh
Confidence 467899999 99999999999999999999999755 7899999998643 3456788999998876
No 11
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.21 E-value=2.6e-06 Score=74.10 Aligned_cols=48 Identities=21% Similarity=0.443 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHhHHHhhcCCCCC-----CCcccchHHHHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITNSH-----ALSKTSIIVDASNYIEELKQKVER 50 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP~~-----K~DKaSil~dAI~YIk~Lq~~v~~ 50 (158)
+-|||||.+||+++..|-.|+|.. |..|.+||.-+.+||++||+..+.
T Consensus 239 eVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 239 EVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 469999999999999999999933 667999999999999999987763
No 12
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.14 E-value=4.7e-05 Score=49.41 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=43.7
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeec
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENE 129 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~ 129 (158)
.|.|.++.+ ||+|.+|+.+|.++++++.++++.+.+++.+..|.+...
T Consensus 2 ~l~v~~~d~-~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~ 49 (70)
T cd04899 2 VLELTALDR-PGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA 49 (70)
T ss_pred EEEEEEcCC-ccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC
Confidence 578999999 999999999999999999999999988888888887643
No 13
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.08 E-value=5.6e-05 Score=50.29 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=53.3
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHh
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIR 149 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~ 149 (158)
..|.|.++.+ ||+|.+|..+|.++|++|+++.+.+.++..+.+|.+... ++...+. +..+.+.++|+
T Consensus 2 tri~V~~~D~-~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDR-VGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPVDP-KTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCc-cCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcCCH-HHHHHHHHHhc
Confidence 4577899999 999999999999999999999999998888888887643 3333444 45556777766
No 14
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.03 E-value=8.4e-06 Score=64.19 Aligned_cols=55 Identities=20% Similarity=0.374 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-CC-------CCcccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 031518 3 SREHKKAAALHEKLQLLRSITN-SH-------ALSKTSIIVDASNYIEELKQKVERLNRDIEN 57 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~~-------K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~~ 57 (158)
.+||+||+.||.-+..|..||| .. |.-||-||..+|+||..|.....+-+.+...
T Consensus 68 qaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~ 130 (229)
T KOG1319|consen 68 QAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVST 130 (229)
T ss_pred HHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999 33 5668999999999999999887776666543
No 15
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.95 E-value=7e-05 Score=71.10 Aligned_cols=69 Identities=14% Similarity=0.271 Sum_probs=58.5
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCH---HHHHHHHHHHHhh
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDA---HVVKQALLQVIRN 150 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~---~~l~~~l~~ai~~ 150 (158)
..|.|.|..+ ||+|.+|..+|.++|++|.+|.|+|.++.+.++|.+... .+..++. +.|+++|..++..
T Consensus 809 TvlEV~a~DR-pGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 809 SYMELIALDQ-PGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA-DRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred EEEEEEeCCc-hHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC-CCCcCCHHHHHHHHHHHHHHHhh
Confidence 7899999999 999999999999999999999999999999999999754 4555663 4566666666644
No 16
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.90 E-value=5.9e-06 Score=67.93 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhHHHhhcCCC----C-----CCCcccchHHHHHHHHHHHHHHHHH
Q 031518 5 EHKKAAALHEKLQLLRSITN----S-----HALSKTSIIVDASNYIEELKQKVER 50 (158)
Q Consensus 5 ER~RR~kln~~~~~LRslvP----~-----~K~DKaSil~dAI~YIk~Lq~~v~~ 50 (158)
|||||.|||+-|..|+.|+| - +|++||=||.=|++|++.|+..-..
T Consensus 40 EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 40 EKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 89999999999999999988 1 5789999999999999999976544
No 17
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.88 E-value=0.00015 Score=69.00 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=64.4
Q ss_pred EEEEEEC--CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCH----HHHHHHH
Q 031518 71 VTVKTLE--KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDA----HVVKQAL 144 (158)
Q Consensus 71 V~V~~~~--~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~----~~l~~~l 144 (158)
|.+.... +...|.|.+..+ ||+|.+|..+|..+||+|+.|.|+|.++.++++|.+... ++..++. +.|+++|
T Consensus 804 V~i~~~~~~~~T~i~V~a~Dr-pGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L 881 (895)
T PRK00275 804 VTISNDAQRPVTVLEIIAPDR-PGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAI 881 (895)
T ss_pred EEEEECCCCCeEEEEEEECCC-CCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHH
Confidence 5555543 337899999999 999999999999999999999999999999999999754 3333432 5578888
Q ss_pred HHHHhhhhc
Q 031518 145 LQVIRNWSE 153 (158)
Q Consensus 145 ~~ai~~~~~ 153 (158)
.+++.+..+
T Consensus 882 ~~~L~~~~~ 890 (895)
T PRK00275 882 CEQLDARNE 890 (895)
T ss_pred HHHHhcccc
Confidence 888765443
No 18
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.80 E-value=1.9e-05 Score=73.79 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC--C---CCCcccchHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN--S---HALSKTSIIVDASNYIEELKQK 47 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP--~---~K~DKaSil~dAI~YIk~Lq~~ 47 (158)
++|+|||++||..+..|-+++| . -|+||.+||-.||.+|+.+++.
T Consensus 26 ~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 26 EIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 5799999999999999999999 4 6999999999999999998875
No 19
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.77 E-value=0.00035 Score=66.38 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=62.5
Q ss_pred CCceEEEEEECC-e-EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCH---HHHH
Q 031518 67 LPIQVTVKTLEK-G-FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDA---HVVK 141 (158)
Q Consensus 67 ~p~~V~V~~~~~-~-~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~---~~l~ 141 (158)
.|..|.+....+ + ..|.|.+..+ ||+|.+|..+|..+|++|+.|.|+|.++.+.++|.+... ++...+. +.|+
T Consensus 782 ~~~~V~~~~~~~~~~t~leI~a~Dr-pGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~~~~~l~ 859 (869)
T PRK04374 782 FAPRVEFSESAGGRRTRISLVAPDR-PGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE-HDRPLSESARQALR 859 (869)
T ss_pred CCCeEEEeecCCCCeEEEEEEeCCc-CcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcCChHHHHHHH
Confidence 344466655433 3 8899999999 999999999999999999999999999999999999754 2333433 4566
Q ss_pred HHHHHHH
Q 031518 142 QALLQVI 148 (158)
Q Consensus 142 ~~l~~ai 148 (158)
++|..+|
T Consensus 860 ~~L~~~l 866 (869)
T PRK04374 860 DALCACL 866 (869)
T ss_pred HHHHHHh
Confidence 6666665
No 20
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.67 E-value=0.00034 Score=66.31 Aligned_cols=67 Identities=27% Similarity=0.434 Sum_probs=56.3
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCH---HHHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDA---HVVKQALLQVI 148 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~---~~l~~~l~~ai 148 (158)
..|.|.+..+ ||+|.+|..+|.++|++|..|.|+|.++.+.++|.+... .+..++. +.|+++|..+|
T Consensus 784 T~iev~a~Dr-pGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 784 TEMELFALDR-AGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred EEEEEEeCCc-hHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC-CCCcCChHHHHHHHHHHHHHh
Confidence 7899999999 999999999999999999999999999999999999754 3455654 44555555544
No 21
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.61 E-value=0.00051 Score=65.17 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=56.9
Q ss_pred EEEEEEC--CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccC---HHHHHHHHH
Q 031518 71 VTVKTLE--KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETID---AHVVKQALL 145 (158)
Q Consensus 71 V~V~~~~--~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~---~~~l~~~l~ 145 (158)
|.+.... +-..|.|.|+.+ ||+|.+|..+|..+|++|+.|.|+|.+|.+.++|.+.. .+ ..+ .+.|+++|.
T Consensus 776 V~~~~~~~~~~T~i~V~a~Dr-pGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~--~~-~~~~~~~~~l~~~L~ 851 (856)
T PRK03059 776 VDLRPDERGQYYILSVSANDR-PGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG--SG-LSDNRLQIQLETELL 851 (856)
T ss_pred EEEEEcCCCCEEEEEEEeCCc-chHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC--CC-CCCHHHHHHHHHHHH
Confidence 4444432 237899999999 99999999999999999999999999999999999932 12 122 345666666
Q ss_pred HHH
Q 031518 146 QVI 148 (158)
Q Consensus 146 ~ai 148 (158)
++|
T Consensus 852 ~~L 854 (856)
T PRK03059 852 DAL 854 (856)
T ss_pred HHh
Confidence 554
No 22
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.59 E-value=0.00073 Score=63.46 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=57.2
Q ss_pred EEEEEECC--eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 71 VTVKTLEK--GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 71 V~V~~~~~--~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
|.+....+ -..|.|.|..+ ||+|.+|..+|..+|++|++|.|+|.++.++++|.+... ++..++.+ .+.|.++
T Consensus 697 v~~~~~~~~~~t~i~V~a~Dr-pGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~--~~~l~~~ 771 (774)
T PRK03381 697 VLWLDGASPDATVLEVRAADR-PGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA-AGGPLADA--RAAVEQA 771 (774)
T ss_pred EEEEECCCCCeEEEEEEeCCc-hhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECC-CCCcCchH--HHHHHHH
Confidence 44444332 38899999999 999999999999999999999999999999999999754 34455433 4444444
No 23
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.58 E-value=0.00096 Score=63.77 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=62.9
Q ss_pred eEEEEEECC--eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCcc-C---HHHHHHH
Q 031518 70 QVTVKTLEK--GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETI-D---AHVVKQA 143 (158)
Q Consensus 70 ~V~V~~~~~--~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~-~---~~~l~~~ 143 (158)
.|.+..... ...|.|.|..+ ||+|.+|..+|.++|++|.+|.|+|.++.+.++|.+... ++..+ + .+.|+++
T Consensus 832 ~V~~~~~~s~~~t~i~I~~~Dr-pGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~ 909 (931)
T PRK05092 832 RVTIDNEASNRFTVIEVNGRDR-PGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRA 909 (931)
T ss_pred EEEEeeCCCCCeEEEEEEECCc-CcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHH
Confidence 355555432 37899999999 999999999999999999999999999999999998754 33333 3 3567888
Q ss_pred HHHHHhh
Q 031518 144 LLQVIRN 150 (158)
Q Consensus 144 l~~ai~~ 150 (158)
|..+|..
T Consensus 910 L~~~L~~ 916 (931)
T PRK05092 910 LLAALAE 916 (931)
T ss_pred HHHHhcC
Confidence 8877754
No 24
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.54 E-value=0.00093 Score=42.30 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=45.9
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC--eEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT--FSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~--~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
+.|.|.|+.+ ||+|.++..+|-++|+++.++.+....+ .....+... .....+.+.++|.+.
T Consensus 1 ~~v~v~~~dr-pG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDR-PGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV-----DEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETS-TTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE-----EGHGHHHHHHHHHHH
T ss_pred CEEEEEcCCC-CCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC-----CCCCHHHHHHHHHcc
Confidence 3688999999 9999999999999999999999999877 222222221 234556666666554
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.49 E-value=0.00086 Score=62.99 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=63.6
Q ss_pred EEEEEE-CCeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHh
Q 031518 71 VTVKTL-EKGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIR 149 (158)
Q Consensus 71 V~V~~~-~~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~ 149 (158)
|.+... .+.+.|.|.|+.+ ||++.+|..+|..+|++|++|++.+.+|.++.+|.|... .+.....+.+++.|.+++.
T Consensus 590 v~~~~~~~~~~~V~V~~~Dr-pGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~~~~~l~~~L~~~L~ 667 (774)
T PRK03381 590 VEIAPADPHMVEVTVVAPDR-RGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPPDAALLRQDLRRALD 667 (774)
T ss_pred EEEeeCCCCeEEEEEEecCC-ccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcchHHHHHHHHHHHHc
Confidence 444333 3558899999999 999999999999999999999999999999999998643 3333456788999888876
Q ss_pred h
Q 031518 150 N 150 (158)
Q Consensus 150 ~ 150 (158)
.
T Consensus 668 ~ 668 (774)
T PRK03381 668 G 668 (774)
T ss_pred C
Confidence 5
No 26
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.49 E-value=0.0024 Score=40.82 Aligned_cols=47 Identities=30% Similarity=0.531 Sum_probs=41.4
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeee
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGEN 128 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~ 128 (158)
.|.|.|+.+ ||++.+|+.+|.++|+++.++.+.+.++.....+.+..
T Consensus 2 ~l~i~~~d~-~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~ 48 (70)
T cd04873 2 VVEVYAPDR-PGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD 48 (70)
T ss_pred EEEEEeCCC-CCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC
Confidence 477899999 99999999999999999999999988777677776654
No 27
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.44 E-value=0.00029 Score=57.84 Aligned_cols=51 Identities=24% Similarity=0.431 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhHHHhhcC-C--CCCCCcccchHHHHHHHHHHHHHHHHHHHHh
Q 031518 4 REHKKAAALHEKLQLLRSI-T--NSHALSKTSIIVDASNYIEELKQKVERLNRD 54 (158)
Q Consensus 4 aER~RR~kln~~~~~LRsl-v--P~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e 54 (158)
.||||=+|.|+-|.+|..- . |-...-|+-||-.||.||..||.-++++.+.
T Consensus 125 RERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 125 RERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5898889999999999765 2 3778899999999999999999999998764
No 28
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.43 E-value=0.0025 Score=42.70 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=51.4
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHhh
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIRN 150 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~ 150 (158)
.+.|++.++++ ||++..+..+|.++|.++.+++.++.++...-.+.+... .-+.+.++.+|.+...+
T Consensus 2 ~~vItv~G~Dr-pGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~----~~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVGPDR-PGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP----EDSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEEE---TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES----HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCC-CcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC----cccHHHHHHHHHHHHHH
Confidence 37899999999 999999999999999999999999999976655666542 12667777777766544
No 29
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.36 E-value=0.0018 Score=61.34 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=59.7
Q ss_pred CceEEEEEECC--eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCH---HHHHH
Q 031518 68 PIQVTVKTLEK--GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDA---HVVKQ 142 (158)
Q Consensus 68 p~~V~V~~~~~--~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~---~~l~~ 142 (158)
|..|.+..... -..|.|.|..+ ||+|.+|..+|.++|++|.+|.|+|.++...++|.+... .+..++. +.|++
T Consensus 766 ~~~V~~d~~~s~~~t~~~v~~~Dr-pGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~-~g~~~~~~~~~~l~~ 843 (850)
T TIGR01693 766 PPRVTILNTASRKATIMEVRALDR-PGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKLTDEEEQRLLE 843 (850)
T ss_pred CCeEEEccCCCCCeEEEEEEECCc-cHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECC-CCCCCCHHHHHHHHH
Confidence 33355444332 38899999999 999999999999999999999999999999999988653 3444543 44555
Q ss_pred HHHHHH
Q 031518 143 ALLQVI 148 (158)
Q Consensus 143 ~l~~ai 148 (158)
+|..++
T Consensus 844 ~L~~~l 849 (850)
T TIGR01693 844 VLAASV 849 (850)
T ss_pred HHHHHh
Confidence 555543
No 30
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.34 E-value=0.00014 Score=61.04 Aligned_cols=49 Identities=27% Similarity=0.485 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC---CCCCcccchHHHHHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN---SHALSKTSIIVDASNYIEELKQKVERL 51 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP---~~K~DKaSil~dAI~YIk~Lq~~v~~L 51 (158)
+.||+|=+-||.-|..||+|+| -.|.-||.||.-+.+||.+|+.+--+|
T Consensus 66 sNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 66 SNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred chHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 5689888999999999999999 678999999999999999998754443
No 31
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.34 E-value=0.0017 Score=61.40 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=58.3
Q ss_pred CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEE-eeCCeEEEEEeeeecCCCCccCH----HHHHHHHHHHHhh
Q 031518 78 KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVS-CTDTFSLQAIGGENEEQGETIDA----HVVKQALLQVIRN 150 (158)
Q Consensus 78 ~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is-~~~~~~l~~~~v~~~~~~~~~~~----~~l~~~l~~ai~~ 150 (158)
+...|.|.++.+ ||+|.+|..+|..+||+|++|.|+ +.+|.++++|.+... ++...+. +.|++.|..++..
T Consensus 667 ~~t~i~V~~~Dr-pgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 667 GGTEVFIYAPDQ-PGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CeEEEEEEeCCC-CcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHHHHHHHHHHHcC
Confidence 347899999999 999999999999999999999998 678999999999764 3333433 3477788777754
No 32
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.30 E-value=0.0031 Score=60.10 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=61.2
Q ss_pred EEEEEEC--CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee-CCeEEEEEeeeecCCCCccCH---HHHHHHH
Q 031518 71 VTVKTLE--KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT-DTFSLQAIGGENEEQGETIDA---HVVKQAL 144 (158)
Q Consensus 71 V~V~~~~--~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~v~~~~~~~~~~~---~~l~~~l 144 (158)
|.+.... +...|.|.|+.+ ||+|.+|..+|..+||+|+.|.|.+. +|.++++|.+... ++..++. +.|++.|
T Consensus 691 V~i~~~~~~~~t~V~V~a~Dr-pGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~~~~~~~~I~~~L 768 (884)
T PRK05007 691 VLLSKQATRGGTEIFIWSPDR-PYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPLSQDRHQVIRKAL 768 (884)
T ss_pred EEEEecCCCCeEEEEEEecCC-cCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCCCHHHHHHHHHHH
Confidence 5555443 358899999999 99999999999999999999999776 5699999998754 3344444 3478888
Q ss_pred HHHHhh
Q 031518 145 LQVIRN 150 (158)
Q Consensus 145 ~~ai~~ 150 (158)
.+++..
T Consensus 769 ~~aL~~ 774 (884)
T PRK05007 769 EQALTQ 774 (884)
T ss_pred HHHHcC
Confidence 888754
No 33
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.29 E-value=0.0026 Score=60.45 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=60.6
Q ss_pred EEEEEEC--CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEe-eCCeEEEEEeeeecCCCCccCHH---HHHHHH
Q 031518 71 VTVKTLE--KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSC-TDTFSLQAIGGENEEQGETIDAH---VVKQAL 144 (158)
Q Consensus 71 V~V~~~~--~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~v~~~~~~~~~~~~---~l~~~l 144 (158)
|.+.... +...|.|.|+.+ ||+|.+|..+|..+||+|+.|.|.+ .+|.++++|.|... ++..++.+ .|+++|
T Consensus 667 V~i~~~~~~~~t~V~V~~~Dr-pGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~~~~~~~l~~~L 744 (854)
T PRK01759 667 VKISNRFSRGGTEIFIYCQDQ-ANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLEFDRRRQLEQAL 744 (854)
T ss_pred EEEEecCCCCeEEEEEEecCC-ccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCCHHHHHHHHHHH
Confidence 5554433 347899999999 9999999999999999999999977 78999999998754 34444443 467777
Q ss_pred HHHHh
Q 031518 145 LQVIR 149 (158)
Q Consensus 145 ~~ai~ 149 (158)
.+++.
T Consensus 745 ~~aL~ 749 (854)
T PRK01759 745 TKALN 749 (854)
T ss_pred HHHHc
Confidence 77765
No 34
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.13 E-value=0.00081 Score=54.79 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhHHHhhcCCC--CCCC--cccchHHHHHHHHHHHHHHHHHHHH
Q 031518 4 REHKKAAALHEKLQLLRSITN--SHAL--SKTSIIVDASNYIEELKQKVERLNR 53 (158)
Q Consensus 4 aER~RR~kln~~~~~LRslvP--~~K~--DKaSil~dAI~YIk~Lq~~v~~Le~ 53 (158)
=||+||..|.+.|..|+-+|| -... +.++||--|..||+.|+.+..+.+.
T Consensus 66 LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~ 119 (232)
T KOG2483|consen 66 LEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ 119 (232)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence 489999999999999999999 2222 3578999999999999887665544
No 35
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.10 E-value=0.0043 Score=59.22 Aligned_cols=70 Identities=20% Similarity=0.434 Sum_probs=55.9
Q ss_pred CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEE-EeeCCeEEEEEeeeecCCCCc-cC----HHHHHHHHHHHHh
Q 031518 78 KGFMINVFSKKSCPGLLVSILETFEELALNVLEARV-SCTDTFSLQAIGGENEEQGET-ID----AHVVKQALLQVIR 149 (158)
Q Consensus 78 ~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~i-s~~~~~~l~~~~v~~~~~~~~-~~----~~~l~~~l~~ai~ 149 (158)
+...|.|.|+.+ ||+|.+|..+|..+|++|++|.| ++.+|+++++|.|-.. ++.. .+ .+.|.+.|.+++.
T Consensus 703 ~~t~V~V~~~Dr-pgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r~~~i~~~L~~~L~ 778 (895)
T PRK00275 703 GGTQIFIYAPDQ-HDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPARIEQIREGLTEALR 778 (895)
T ss_pred CeEEEEEEeCCC-CcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHHHHHHHHHHHHHHc
Confidence 358899999999 99999999999999999999998 5558899999998654 2332 22 3447777777765
No 36
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.08 E-value=0.01 Score=39.75 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=51.9
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
+.|.+.|+.+ ||+..+|-..|.+.|.++.+++....++...-.+.+... ..+.+.+++.+.....++
T Consensus 2 ~iltv~g~Dr-~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~~~~~~l~~~l~~~~~~~ 68 (77)
T cd04893 2 LVISALGTDR-PGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----WDAIAKLEAALPGLARRL 68 (77)
T ss_pred EEEEEEeCCC-ChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----cccHHHHHHHHHHHHHHc
Confidence 5789999999 999999999999999999999998887744333333332 246788888887755443
No 37
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.07 E-value=0.0092 Score=39.35 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=48.0
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC-CeEEEEEeeeecCCCCccCHHHHHHHHHHHHhh
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCTD-TFSLQAIGGENEEQGETIDAHVVKQALLQVIRN 150 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~ 150 (158)
|.+.|+.+ ||++.+|...|-++|+++.+.+..+.. +..+.. .++...+....+..+++++|......
T Consensus 2 i~v~g~D~-~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 2 LTLSCPDR-PGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFM-RVEFELEGFDLSREALEAAFAPVAAE 69 (74)
T ss_pred EEEEcCCC-CCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEE-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 78999999 999999999999999999999887632 222222 22222122236788999888776544
No 38
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.03 E-value=0.0056 Score=58.21 Aligned_cols=79 Identities=22% Similarity=0.442 Sum_probs=59.4
Q ss_pred CCceEEEEEEC--CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEE-EeeCCeEEEEEeeeecCCCCccC----HHH
Q 031518 67 LPIQVTVKTLE--KGFMINVFSKKSCPGLLVSILETFEELALNVLEARV-SCTDTFSLQAIGGENEEQGETID----AHV 139 (158)
Q Consensus 67 ~p~~V~V~~~~--~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~i-s~~~~~~l~~~~v~~~~~~~~~~----~~~ 139 (158)
.|. |-++... +...|.|.|+.+ ||++.+|..+|..+||+|++|.| ++.+|+++++|.|... ++... .+.
T Consensus 665 ~~~-v~~~~~~~~~~~~v~i~~~d~-~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~--~~~~~~~~~~~~ 740 (856)
T PRK03059 665 TPI-VRARLSPAGEGLQVMVYTPDQ-PDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP--EEDVHYRDIINL 740 (856)
T ss_pred CCe-EEEEecCCCCeEEEEEEecCC-CcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC--CCCCChHHHHHH
Confidence 444 4454432 448899999999 99999999999999999999999 4568999999998653 22232 444
Q ss_pred HHHHHHHHHh
Q 031518 140 VKQALLQVIR 149 (158)
Q Consensus 140 l~~~l~~ai~ 149 (158)
|++.|.+++.
T Consensus 741 i~~~l~~~l~ 750 (856)
T PRK03059 741 VEHELAERLA 750 (856)
T ss_pred HHHHHHHHHc
Confidence 6666666664
No 39
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0033 Score=59.08 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=59.4
Q ss_pred EEEEEEC--CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 71 VTVKTLE--KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 71 V~V~~~~--~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
|...... +...+++.+..+ ||+|..+..+|.+++|++++|.|+|+|..+.++|.+... .+..+ ..++++.+.+.+
T Consensus 781 v~i~~t~~~~~t~lEv~alDR-pGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~-~~~~l-~~~~~q~l~~~l 857 (867)
T COG2844 781 VTILPTASNDKTVLEVRALDR-PGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA-DGQAL-NAELRQSLLQRL 857 (867)
T ss_pred eeeccccCCCceEEEEEeCCc-ccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecc-ccccC-CHHHHHHHHHHH
Confidence 5444443 348899999999 999999999999999999999999999999999998754 34445 445555555543
No 40
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.98 E-value=0.0054 Score=58.44 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=56.7
Q ss_pred CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEe-eCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHhh
Q 031518 78 KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSC-TDTFSLQAIGGENEEQGETIDAHVVKQALLQVIRN 150 (158)
Q Consensus 78 ~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~ 150 (158)
+...|.|.|+.+ ||++.+|..+|..+|++|++|.|.+ .+|.++++|.|...++...-....|.+.|.+++..
T Consensus 689 ~~~~v~v~~~d~-~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~ 761 (869)
T PRK04374 689 DALEVFVYSPDR-DGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAG 761 (869)
T ss_pred CeEEEEEEeCCC-ccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcC
Confidence 458899999999 9999999999999999999999987 58999999998654221122344477777776653
No 41
>PRK00194 hypothetical protein; Validated
Probab=96.94 E-value=0.0078 Score=41.16 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=51.3
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHh
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIR 149 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~ 149 (158)
.+.|.+.|+++ ||++.++...|-++|+++.+.+..+.++...-.+.+.. ++...+.+++++.|...-.
T Consensus 3 ~~~ltv~g~Dr-pGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~l~~l~~ 70 (90)
T PRK00194 3 KAIITVIGKDK-VGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDI--SESKKDFAELKEELEELGK 70 (90)
T ss_pred eEEEEEEcCCC-CCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEe--cCCCCCHHHHHHHHHHHHH
Confidence 47899999999 99999999999999999999988877664433333433 2224567888877766543
No 42
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.88 E-value=0.021 Score=37.84 Aligned_cols=67 Identities=9% Similarity=0.177 Sum_probs=50.4
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC------CeEEEEEeeeecCCCCccCHHHHHHHHHHHHhhhh
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCTD------TFSLQAIGGENEEQGETIDAHVVKQALLQVIRNWS 152 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~------~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~~ 152 (158)
|.+.|+.+ ||++.+|-+.|.++|+++.+.+..+.+ +...-.+.+.. ....+...+++.|...-.+++
T Consensus 2 l~v~g~D~-~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~---p~~~~~~~l~~~l~~l~~~~~ 74 (81)
T cd04869 2 VEVVGNDR-PGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLAL---PAGTDLDALREELEELCDDLN 74 (81)
T ss_pred EEEEeCCC-CCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEec---CCCCCHHHHHHHHHHHHHHhc
Confidence 67999999 999999999999999999999998876 32222222222 235788999988887665543
No 43
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.0096 Score=40.70 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=52.4
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
+.|.+.|+++ ||++..|...|-++|+++.+.+..+.++...-.+.+.. ++...+...+++.|.....++
T Consensus 2 ~vl~i~g~D~-pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~--~~~~~~~~~L~~~l~~l~~~~ 70 (88)
T cd04872 2 AVITVVGKDR-VGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI--SESNLDFAELQEELEELGKEL 70 (88)
T ss_pred EEEEEEcCCC-CCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe--CCCCCCHHHHHHHHHHHHHHc
Confidence 5789999999 99999999999999999999998876664332333332 222567889998888765543
No 44
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.85 E-value=0.01 Score=56.80 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=59.7
Q ss_pred EEEEEEC--CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEe-eCCeEEEEEeeeecCCCCcc----CHHHHHHH
Q 031518 71 VTVKTLE--KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSC-TDTFSLQAIGGENEEQGETI----DAHVVKQA 143 (158)
Q Consensus 71 V~V~~~~--~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~v~~~~~~~~~----~~~~l~~~ 143 (158)
|.+.... +...|.|.|+.+ ||+|.+|..+|..+|++|++|.|++ .+|+++++|.+... .+... ..+.|.+.
T Consensus 722 v~~~~~~~~~~t~v~I~~~Dr-~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l~~~ 799 (931)
T PRK05092 722 TEVRPDPARGVTEVTVLAADH-PGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARLAKA 799 (931)
T ss_pred EEEEecCCCCeEEEEEEeCCC-CcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHH
Confidence 5555543 458899999999 9999999999999999999999987 58899999988643 22222 24557777
Q ss_pred HHHHHh
Q 031518 144 LLQVIR 149 (158)
Q Consensus 144 l~~ai~ 149 (158)
|.+++.
T Consensus 800 L~~~l~ 805 (931)
T PRK05092 800 IEDALS 805 (931)
T ss_pred HHHHHc
Confidence 777763
No 45
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.71 E-value=0.0016 Score=52.49 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-----CCCCcccchHHHHHHHHHHHHHHHHHHHHh
Q 031518 3 SREHKKAAALHEKLQLLRSITN-----SHALSKTSIIVDASNYIEELKQKVERLNRD 54 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-----~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e 54 (158)
++||+|=+-+|..|..||.++| .+|.-|..+|.-||.||+.|+.-+..-+..
T Consensus 115 ~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 115 ARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 5689888999999999999977 346789999999999999999988775543
No 46
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.64 E-value=0.055 Score=36.00 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=39.0
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CCeEEEEEeeee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DTFSLQAIGGEN 128 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~v~~ 128 (158)
+.|+|.+..+ ||+|.+|..++.+.|.++.+.++... +++..-.+.++.
T Consensus 7 ~~l~i~~~dr-~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V 56 (80)
T PF13291_consen 7 VRLRIEAEDR-PGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV 56 (80)
T ss_dssp EEEEEEEE---TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE
T ss_pred EEEEEEEEcC-CCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE
Confidence 6789999999 99999999999999999999999985 566666666654
No 47
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.037 Score=36.67 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=50.3
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHhh
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIRN 150 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~ 150 (158)
|.|.++++ ||++..+..+|-++|+++.+.+.++.++...-.+.+.. ....+.++++++|......
T Consensus 2 vtv~G~Dr-pGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~---p~~~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 2 ITVTGPDR-PGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI---PDSADSEALLKDLLFKAHE 66 (75)
T ss_pred EEEEcCCC-CCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc---CCCCCHHHHHHHHHHHHHH
Confidence 68899999 99999999999999999999988888874333333432 2336788888888776543
No 48
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.00 E-value=0.014 Score=40.54 Aligned_cols=48 Identities=21% Similarity=0.415 Sum_probs=40.4
Q ss_pred HHHHHhHHHhhcCCC-C---CCCcccc---hHHHHHHHHHHHHHHHHHHHHhhhc
Q 031518 10 AALHEKLQLLRSITN-S---HALSKTS---IIVDASNYIEELKQKVERLNRDIEN 57 (158)
Q Consensus 10 ~kln~~~~~LRslvP-~---~K~DKaS---il~dAI~YIk~Lq~~v~~Le~e~~~ 57 (158)
+.||+....|+.|+| + ...||+| +|.++-+||+.|...|.+|...+..
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~ 74 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSE 74 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999 3 2346665 6999999999999999999886554
No 49
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.87 E-value=0.1 Score=33.81 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=37.5
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC-CeEEEEEeeee
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCTD-TFSLQAIGGEN 128 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~v~~ 128 (158)
|+|.+..+ ||+|.+|+.++.+.|.++.+.+....+ ++..-.+.++.
T Consensus 2 l~v~~~d~-~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev 48 (74)
T cd04887 2 LRLELPNR-PGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA 48 (74)
T ss_pred EEEEeCCC-CchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc
Confidence 67899999 999999999999999999999987764 55444455543
No 50
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.77 E-value=0.098 Score=32.95 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=29.9
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
+.|.++.+ ||.|.+|+.+|.+.|+++.+.+....
T Consensus 1 ~~v~~~d~-~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDR-PGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCC-CChHHHHHHHHHHcCCCEEEEEEEec
Confidence 35788999 99999999999999999998887654
No 51
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.073 Score=50.36 Aligned_cols=62 Identities=16% Similarity=0.332 Sum_probs=51.0
Q ss_pred EEEECCeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEe-eCCeEEEEEeeeecCCCCccC
Q 031518 73 VKTLEKGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSC-TDTFSLQAIGGENEEQGETID 136 (158)
Q Consensus 73 V~~~~~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~v~~~~~~~~~~ 136 (158)
++...++..|-|.|+.+ |+++..+..++...|++++.|+|-+ .+|+.+++|.|..- ++..++
T Consensus 678 ~r~~~~~teV~V~a~d~-p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~ 740 (867)
T COG2844 678 VRPHSGGTEVFVYAPDR-PRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE 740 (867)
T ss_pred ecccCCceEEEEEcCCC-ccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc
Confidence 44445779999999999 9999999999999999999999955 58899999988643 233444
No 52
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.53 E-value=0.1 Score=34.38 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=51.6
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
.|.|.|+.+ -|+=-++...+=++||.+....+++-+.--.-++-+..........=+-+|+.|..+
T Consensus 2 vitvnCPDk-tGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDK-TGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCc-cCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 488999999 999999999999999999999999988755555555433223346667788887665
No 53
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.38 E-value=0.15 Score=29.19 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=31.0
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCTD 117 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~ 117 (158)
|.+.|+.. +|.+.+++..|...++++.....+..+
T Consensus 1 i~i~~~~~-~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDR-PGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCC-CchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889998 999999999999999999999886654
No 54
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.27 E-value=0.21 Score=32.75 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=36.4
Q ss_pred EEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeec
Q 031518 83 NVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENE 129 (158)
Q Consensus 83 ~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~ 129 (158)
-+..+++ ||.|.+++..|..+|+++.+....+..+ ..-+.+.++..
T Consensus 3 ~~~l~d~-pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~ 49 (75)
T cd04880 3 VFSLKNK-PGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE 49 (75)
T ss_pred EEEeCCc-CCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence 3455678 9999999999999999999998888765 44455556654
No 55
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.24 E-value=0.26 Score=31.41 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=32.7
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
++|+|.+..+ ||++.+++..|.+.+.++.+.+....
T Consensus 1 ~yl~i~~~d~-~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 1 YYLRLTVKDK-PGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred CEEEEEeCCC-CcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 5789999999 99999999999999999999887665
No 56
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.09 E-value=0.2 Score=30.30 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=31.3
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCTD 117 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~ 117 (158)
|++.|..+ ||.+.+++..|.+.++++.+..+...+
T Consensus 1 l~v~~~~~-~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDR-PGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEecc-CcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 46789999 999999999999999999998887665
No 57
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.95 E-value=0.18 Score=42.40 Aligned_cols=70 Identities=11% Similarity=0.240 Sum_probs=52.1
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEE---eeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVS---CTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is---~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
.+.|.|.|+++ ||+...|-..|-+.|+++++.+-. ..+.|.+.....-. .....+.++++++|...-..+
T Consensus 9 ~~iitv~G~Dr-~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~--~~~~~~~~~l~~~l~~l~~~l 81 (289)
T PRK13010 9 SYVLTLACPSA-PGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ--SAEAASVDTFRQEFQPVAEKF 81 (289)
T ss_pred CEEEEEECCCC-CCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC--CCCCCCHHHHHHHHHHHHHHh
Confidence 47899999999 999999999999999999998884 33445444332211 123578899999988765543
No 58
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.82 E-value=0.22 Score=32.26 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=35.4
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee-CCeEEEEEeee
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCT-DTFSLQAIGGE 127 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~v~ 127 (158)
.+.|.++.+ ||++.+|+.+|.+.+.++...+.+.. ++...-.+.++
T Consensus 2 ~l~i~~~d~-~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~ 48 (76)
T cd04888 2 TLSLLLEHR-PGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISID 48 (76)
T ss_pred EEEEEecCC-CchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEE
Confidence 578899999 99999999999999999999877553 34333334443
No 59
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.63 E-value=0.38 Score=40.30 Aligned_cols=68 Identities=12% Similarity=0.230 Sum_probs=51.6
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC---eEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT---FSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~---~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
.+.|.|.|+++ ||++..|-..|-++|+++.+.+..+..+ |.+. ++.. -+...+..+++++|...-...
T Consensus 7 ~~vitv~G~Dr-pGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~---~~~~-~p~~~~~~~L~~~L~~l~~~l 77 (286)
T PRK13011 7 TFVLTLSCPSA-AGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMR---VEFH-SEEGLDEDALRAGFAPIAARF 77 (286)
T ss_pred eEEEEEEeCCC-CCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEE---EEEe-cCCCCCHHHHHHHHHHHHHHh
Confidence 47899999999 9999999999999999999998874332 3332 2222 133477999999998775543
No 60
>PRK04435 hypothetical protein; Provisional
Probab=94.61 E-value=0.31 Score=36.81 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=41.2
Q ss_pred ECCeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee-CCeEEEEEeeee
Q 031518 76 LEKGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT-DTFSLQAIGGEN 128 (158)
Q Consensus 76 ~~~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~v~~ 128 (158)
.|..+.|.+.+..+ ||+|.+|+..|.+.|.++...+.+.. +|...-++.++.
T Consensus 66 ~~r~vtL~i~l~Dr-~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev 118 (147)
T PRK04435 66 KGKIITLSLLLEDR-SGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT 118 (147)
T ss_pred CCcEEEEEEEEecC-CCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence 35569999999999 99999999999999999999887553 564444455544
No 61
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=94.56 E-value=0.33 Score=40.58 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=48.2
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--C-eEEEEEeeeecCCCCccCHHHHHHHHHH
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--T-FSLQAIGGENEEQGETIDAHVVKQALLQ 146 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ 146 (158)
.|.+.|+++ ||+...|-..|-+.|.++++++-+..+ | |.+. +.+.. ++...+.+++++++..
T Consensus 2 ~itv~g~D~-~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr-~~v~~--~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQ-KGLVAAISTFIAKHGANIISNDQHTDPETGRFFMR-VEFQL--EGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCC-CChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEE-EEEEe--CCCCCCHHHHHHHHHH
Confidence 578999999 999999999999999999999887753 4 4443 22222 2335788999999888
No 62
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.28 E-value=0.51 Score=39.45 Aligned_cols=71 Identities=10% Similarity=0.217 Sum_probs=53.2
Q ss_pred CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEe--eCCe-EEEEEeeeecCCCCccCHHHHHHHHHHHHhhhh
Q 031518 78 KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSC--TDTF-SLQAIGGENEEQGETIDAHVVKQALLQVIRNWS 152 (158)
Q Consensus 78 ~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~--~~~~-~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~~ 152 (158)
..+.|.+.|+++ ||++..|..+|-++|+++.+.+.++ .+|. .+... +.. ++...+.++++++|...-..++
T Consensus 5 ~~~vitv~G~Dr-pGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~-v~~--~~~~~~~~~L~~~L~~l~~~l~ 78 (286)
T PRK06027 5 QRYVLTLSCPDR-PGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVE-FEG--DGLIFNLETLRADFAALAEEFE 78 (286)
T ss_pred ceEEEEEECCCC-CcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEE-EEe--CCCCCCHHHHHHHHHHHHHHhC
Confidence 357899999999 9999999999999999999999998 6663 33222 222 1234568889988887655443
No 63
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.18 E-value=0.28 Score=32.19 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=33.6
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCe
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTF 119 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~ 119 (158)
.|+|.|..+ +|+|.+|+.++.+.+.++.+.++.+. ++
T Consensus 2 ~l~I~~~dr-~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDR-LGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEcc-chHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 578999999 99999999999999999999999775 55
No 64
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=93.98 E-value=0.046 Score=48.12 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhHHHhhcCCC-----CCCCcccchHHHHHHHHHHH
Q 031518 4 REHKKAAALHEKLQLLRSITN-----SHALSKTSIIVDASNYIEEL 44 (158)
Q Consensus 4 aER~RR~kln~~~~~LRslvP-----~~K~DKaSil~dAI~YIk~L 44 (158)
+-|.||++-|--|+.|-.++| .+..||+||+.=|-.|||-=
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 568999999999999999988 55789999999999999853
No 65
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.97 E-value=0.78 Score=29.30 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=41.2
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CCeEEEEEeeeecCCCCccCHHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DTFSLQAIGGENEEQGETIDAHVVKQALLQ 146 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ 146 (158)
..+.+..+.+ ||.|.+++..|.+.|+++.+...... ++...-.+.++. .+.+++.+.|..
T Consensus 2 ~~~~v~~~d~-pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~------~~~~~~~~~L~~ 63 (72)
T cd04883 2 SQIEVRVPDR-PGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT------MNPRPIIEDLRR 63 (72)
T ss_pred cEEEEEECCC-CCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec------CCHHHHHHHHHH
Confidence 4577889999 99999999999999999998765443 234443443432 223466666644
No 66
>PRK08577 hypothetical protein; Provisional
Probab=93.88 E-value=0.8 Score=33.81 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=38.6
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEEeeee
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAIGGEN 128 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~v~~ 128 (158)
.+.|.|.+..+ ||+|.+|+..|.+.+.++.+.+..+.. ++..-.+.++.
T Consensus 56 ~~~I~V~~~Dr-~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev 106 (136)
T PRK08577 56 LVEIELVVEDR-PGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDL 106 (136)
T ss_pred EEEEEEEEcCC-CCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEe
Confidence 48899999999 999999999999999999988877653 43333344443
No 67
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=93.57 E-value=0.043 Score=50.85 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhHHHhhcCCC-----CCCCcccchHHHHHHHHH
Q 031518 4 REHKKAAALHEKLQLLRSITN-----SHALSKTSIIVDASNYIE 42 (158)
Q Consensus 4 aER~RR~kln~~~~~LRslvP-----~~K~DKaSil~dAI~YIk 42 (158)
|-|-||.|-|+-|+.|--++| .+..|||||+-=||.|++
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 458899999999999999977 667899999999999987
No 68
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.53 E-value=0.63 Score=29.66 Aligned_cols=36 Identities=8% Similarity=0.273 Sum_probs=31.4
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
+.+.+.++.+ ||.|.+++..|.+.|+++........
T Consensus 2 ~~~~v~~~d~-~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDE-PGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCC-CCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 3578899999 99999999999999999998876554
No 69
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=93.22 E-value=0.54 Score=28.88 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=35.2
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC-CeEEEEEee
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCTD-TFSLQAIGG 126 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~v 126 (158)
|.+..+.+ ||.|.+++..|.+.|+++....+...+ +..+-.+.+
T Consensus 1 ~~v~~~d~-~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v 45 (56)
T cd04889 1 LSVFVENK-PGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIF 45 (56)
T ss_pred CEEEeCCC-CChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEE
Confidence 35788899 999999999999999999888877665 455544544
No 70
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=93.05 E-value=1.5 Score=29.01 Aligned_cols=59 Identities=24% Similarity=0.246 Sum_probs=42.1
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC-CeEEEEEeeeecCCCCccCHHHHHHHH
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCTD-TFSLQAIGGENEEQGETIDAHVVKQAL 144 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~v~~~~~~~~~~~~~l~~~l 144 (158)
+.+.-+.+ ||.|.+++..|.++|+++.+....... +.....+.++.+ + ..+.+.+..++
T Consensus 4 l~~~~~d~-~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~--~-~~~~~~~~~~l 63 (80)
T cd04905 4 IVFTLPNK-PGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE--G-HIEDPNVAEAL 63 (80)
T ss_pred EEEEECCC-CCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE--C-CCCCHHHHHHH
Confidence 45566788 999999999999999999998877664 344556666654 2 24455555555
No 71
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.04 E-value=0.74 Score=28.82 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=31.9
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD 117 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~ 117 (158)
.+.+.++.+ ||.|.+++..|.+.+.++.+.+....+
T Consensus 2 ~l~i~~~d~-~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDK-PGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCC-CChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 467899999 999999999999999999988877653
No 72
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=92.90 E-value=0.044 Score=52.28 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhHHHhhcCCC--CCCCcccchHHHHHHHHHHHHHHHHHHHHhh
Q 031518 5 EHKKAAALHEKLQLLRSITN--SHALSKTSIIVDASNYIEELKQKVERLNRDI 55 (158)
Q Consensus 5 ER~RR~kln~~~~~LRslvP--~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~ 55 (158)
|+|=|--||++...||.+|| -.|+.|.+++.-||+||++|+..-..+..+.
T Consensus 284 EKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~ 336 (953)
T KOG2588|consen 284 EKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN 336 (953)
T ss_pred HHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence 77789999999999999988 7799999999999999999998777766543
No 73
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.81 E-value=1.1 Score=27.75 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.4
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEe
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSC 115 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~ 115 (158)
++.+.++.+ ||.+.++...|.++++++.+.....
T Consensus 1 ~l~i~~~d~-~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 1 TLIVVHKDK-PGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred CEEEEeCCC-CChHHHHHHHHHHcCcCeeeeEEEe
Confidence 367889999 9999999999999999999888765
No 74
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.59 E-value=0.95 Score=28.08 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=29.3
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCTD 117 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~ 117 (158)
+.+.-+.+ ||.|.+++..|.+.|.++.+...+...
T Consensus 2 i~v~~~d~-pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 2 LAVEVPDK-PGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEEEeCCC-CcHHHHHHHHHHHCCCChhheEEEccC
Confidence 56777899 999999999999999999877664443
No 75
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.55 E-value=1.1 Score=28.93 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=29.4
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
+.+.-+.+ ||.|.+++..|.+.|.++++......
T Consensus 2 l~v~~~d~-pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDK-PGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCC-CccHHHHHHHHHHCCCeEEEEEeccc
Confidence 45677889 99999999999999999998876654
No 76
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=92.40 E-value=1.5 Score=27.19 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=31.3
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
++.+.+..+ ||.|.+|+..|.+.++++.+.+....
T Consensus 2 ~l~i~~~d~-~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04878 2 TLSVLVENE-PGVLNRISGLFARRGFNIESLTVGPT 36 (72)
T ss_pred EEEEEEcCC-CcHHHHHHHHHHhCCCCEEEEEeeec
Confidence 477889999 99999999999999999999888764
No 77
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=92.38 E-value=0.094 Score=47.64 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=33.8
Q ss_pred HHHHHHHHhHHHhhcCCC-----CCCCcccchHHHHHHHHHH
Q 031518 7 KKAAALHEKLQLLRSITN-----SHALSKTSIIVDASNYIEE 43 (158)
Q Consensus 7 ~RR~kln~~~~~LRslvP-----~~K~DKaSil~dAI~YIk~ 43 (158)
|-|+|||.-|..|-||+| |+|.||-|||-=++.|++-
T Consensus 35 RHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 35 RHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred hHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 468999999999999977 8999999999999999863
No 78
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=92.11 E-value=0.37 Score=33.81 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=54.8
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
+.|+|.-..+ ||+...|..+|-++|+++++.+=+-.+|+..-.+.+.. +....+...++..|.....+.
T Consensus 4 avITV~GkDr-~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~--~~~~~d~~~lr~~l~~~~~~l 72 (90)
T COG3830 4 AVITVIGKDR-VGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI--SKEVVDFAALRDELAAEGKKL 72 (90)
T ss_pred EEEEEEcCCC-CchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC--ChHhccHHHHHHHHHHHHHhc
Confidence 6788998999 99999999999999999999888888886544455544 245678888888887776543
No 79
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=92.04 E-value=0.85 Score=28.24 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=35.8
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEEee
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAIGG 126 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~v 126 (158)
+.|.++.+ +|.+.+|+..|.+.|+++.+..+...+ +...-.+.+
T Consensus 2 l~v~~~d~-~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDV-PGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCC-CCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 56788999 999999999999999999999887754 555444444
No 80
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=91.48 E-value=1.4 Score=41.34 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=56.0
Q ss_pred CCeEEEEE-EecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHh
Q 031518 77 EKGFMINV-FSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIR 149 (158)
Q Consensus 77 ~~~~~i~i-~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~ 149 (158)
.++..+.| .|+.+ +|++.++...|--.|+.|.+|++.+ +|.....|.|... -+...++..+.|.+..++.
T Consensus 544 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 544 EEDGFFTVIWHGDY-PRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRAN-GPQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred ccCCeEEEEecCCc-ccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecC-CCCCCChHHHHHHHHHhhc
Confidence 33344444 55999 9999999999999999999999999 7777777777653 4667899999999988764
No 81
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=91.13 E-value=0.92 Score=28.93 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=32.4
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT 118 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~ 118 (158)
.+.|..+.+ ||.|.+|++.|.+.|+++.+..+...++
T Consensus 3 ri~v~v~d~-pG~La~v~~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 3 QLSVFLENK-PGRLAAVTEILSEAGINIRALSIADTSE 39 (66)
T ss_pred EEEEEEcCC-CChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 467788999 9999999999999999999988766655
No 82
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=91.02 E-value=2.8 Score=27.60 Aligned_cols=57 Identities=21% Similarity=0.113 Sum_probs=41.6
Q ss_pred EEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHH
Q 031518 83 NVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALL 145 (158)
Q Consensus 83 ~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~ 145 (158)
-+..+++ ||.|.++|..|...|+++.+-.+-+..+ ..-+.|.++..+ ..+.++++|.
T Consensus 4 ~f~l~~~-pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~-----~~~~~~~~l~ 61 (74)
T cd04904 4 IFSLKEE-VGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV-----DRGDLDQLIS 61 (74)
T ss_pred EEEeCCC-CcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc-----ChHHHHHHHH
Confidence 3455778 9999999999999999999999988765 344666676642 3344555553
No 83
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=89.62 E-value=4.2 Score=27.50 Aligned_cols=62 Identities=8% Similarity=0.101 Sum_probs=43.8
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
..+.+.-.++ ||.|.+++..++.-|+++.+-++...+ ++.--++++. ..-..+.|...|.+.
T Consensus 4 ~~lsi~v~n~-pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-----~~~~i~ql~kQL~KL 67 (76)
T PRK11152 4 HQLTIKARFR-PEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-----SERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEEECC-ccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-----CCchHHHHHHHHhcC
Confidence 4577888899 999999999999999999998888753 4444444442 133445555555443
No 84
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.59 E-value=4.5 Score=28.05 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=44.5
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALLQ 146 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ 146 (158)
..+-+..+.+ ||.|.++|..|...|+++.+-.+.+..+ ..-+.|.++.+ +. ....++++|..
T Consensus 15 tslif~l~~~-pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie--g~--~~~~~~~~l~~ 77 (90)
T cd04931 15 ISLIFSLKEE-VGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD--KK--SAPALDPIIKS 77 (90)
T ss_pred EEEEEEcCCC-CcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE--cC--CCHHHHHHHHH
Confidence 4555666888 9999999999999999999999888754 34466667664 22 23555555543
No 85
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=89.28 E-value=2.4 Score=32.54 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=45.3
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEEeeeecCCCCccCHHHHHHHHHHHHh
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAIGGENEEQGETIDAHVVKQALLQVIR 149 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~ 149 (158)
.|.|.-+.+ ||.|.+|...|...|+++.+..++..+ +...-++.+.. ..-..+.|...|.+.+.
T Consensus 3 ~isI~ven~-pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~----d~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 3 ILSVLVENE-PGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG----DDKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEcCC-CcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC----CHHHHHHHHHHHhcCcc
Confidence 577888999 999999999999999999999888775 34444444532 12334555555554443
No 86
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=89.26 E-value=2.6 Score=35.31 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=50.3
Q ss_pred CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--C-eEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 78 KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--T-FSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 78 ~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
+.+.+.+.|+.+ +|+...|-.-|-+.|.++++++-.... | |.+. ++...++...+.+.+.+.+-....++
T Consensus 6 ~~~~LtvsCpd~-~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR---~~f~~~~~~~~~~~l~~~f~~~a~~f 78 (287)
T COG0788 6 DTFILTVSCPDQ-PGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMR---VEFEGEGGPLDREALRAAFAPLAEEF 78 (287)
T ss_pred cceEEEEecCCC-CCcHHHHHHHHHHcCCceeecccccccccCeEEEE---EEEecCCCcccHHHHHHHHHHHHHhh
Confidence 347899999999 999999999999999999998876321 1 3333 23332344478888888877654433
No 87
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=89.13 E-value=1.3 Score=34.98 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=49.2
Q ss_pred CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 78 KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 78 ~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
..+.|.+.++.+ ||++..|-++|-++|.++.+++.+..+|...-.+.+.. ...+...++.+|-..
T Consensus 7 ~~lviTviG~Dr-pGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~----~~~~~~~le~~L~~l 71 (190)
T PRK11589 7 HYLVITALGADR-PGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG----SWNAITLIESTLPLK 71 (190)
T ss_pred cEEEEEEEcCCC-ChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC----ChhHHHHHHHHHHhh
Confidence 458899999999 99999999999999999999999999884333333321 223566666666443
No 88
>PRK07334 threonine dehydratase; Provisional
Probab=89.10 E-value=2.7 Score=36.55 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=39.0
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee-----CCeEEEEEeeee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT-----DTFSLQAIGGEN 128 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~-----~~~~l~~~~v~~ 128 (158)
+.|.|.+..+ +|+|.+|+..|.+.++++.+.+.... ++...-.+.++.
T Consensus 327 v~l~I~~~dr-~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V 379 (403)
T PRK07334 327 ARLRVDIRDR-PGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET 379 (403)
T ss_pred EEEEEEeCCC-CCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe
Confidence 8899999999 99999999999999999999998754 455433344443
No 89
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=88.71 E-value=2.7 Score=28.46 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=36.3
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEEee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAIGG 126 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~v 126 (158)
..|.+..+++ ||+|.+|...|..-|+++-+-+++..+ +..--++++
T Consensus 3 ~tisi~v~n~-pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~ 50 (76)
T PRK06737 3 HTFSLVIHND-PSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA 50 (76)
T ss_pred EEEEEEEecC-CCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE
Confidence 4578888999 999999999999999999988887654 444444443
No 90
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=88.16 E-value=3.4 Score=31.86 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=37.3
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEEee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAIGG 126 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~v 126 (158)
..|.|.-+.+ ||.|.+|...|...|+++.+..+...+ +...-++.+
T Consensus 3 ~~IsV~veN~-pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V 50 (161)
T PRK11895 3 HTLSVLVENE-PGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT 50 (161)
T ss_pred EEEEEEEcCC-CcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE
Confidence 3577888999 999999999999999999998887765 444444544
No 91
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=87.62 E-value=4.3 Score=41.39 Aligned_cols=70 Identities=16% Similarity=0.325 Sum_probs=56.4
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC-----CeEEEEEeeeecCCCCccCHHHHHHHHHHHHhh
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD-----TFSLQAIGGENEEQGETIDAHVVKQALLQVIRN 150 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~-----~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~ 150 (158)
.+.++|..... +..|++++-.|+++||.|+...-..+. .+.+|.|.+... .+...+...+++.+..++.+
T Consensus 489 ~~~lkiy~~~~-~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 489 RLRLKIYHPGE-PLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred eEEEEEEcCCC-CcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHHHHHHHHHHHHHH
Confidence 38999999888 899999999999999999998655443 257888888765 34457888888888887763
No 92
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=86.17 E-value=6.3 Score=30.76 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=48.5
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CCeEEEEEeeeecCCCCccCHHHHHHHHHHHHhhhh
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DTFSLQAIGGENEEQGETIDAHVVKQALLQVIRNWS 152 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~~ 152 (158)
..|.+.-+++ ||+|.+|...|...|+++.+-++... .|..--++++. +..-..+.|...|.+.+....
T Consensus 3 ~~isvlv~n~-PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~----~~~~~ieqL~kQL~KLidVl~ 72 (174)
T CHL00100 3 HTLSVLVEDE-SGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP----GDDRTIEQLTKQLYKLVNILK 72 (174)
T ss_pred EEEEEEEeCc-CCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE----CCHHHHHHHHHHHHHHhHhhE
Confidence 3578888999 99999999999999999999888763 34442333332 111226788888888766443
No 93
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=86.03 E-value=4.1 Score=26.20 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=34.5
Q ss_pred CchHHHHHHHHhhCCCeEEEEEEEee--CCeEEEEEeeeecCCCCccCHHHHHHHHHH
Q 031518 91 PGLLVSILETFEELALNVLEARVSCT--DTFSLQAIGGENEEQGETIDAHVVKQALLQ 146 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ 146 (158)
||.|.+|+..+..-|+++.+-+++.. ++..--++.+.. ..-..+.|...|.+
T Consensus 3 ~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~----~~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 3 PGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG----DDREIEQLVKQLEK 56 (63)
T ss_dssp TTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-----CCHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee----CchhHHHHHHHHhc
Confidence 99999999999999999999999884 455555454432 22344445544443
No 94
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=85.37 E-value=4.4 Score=28.04 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=36.8
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEEeee
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAIGGE 127 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~v~ 127 (158)
.|.+..+.+ ||+|.+|...|...|+++-+-+++... |+.--++++.
T Consensus 4 ~isvlVeN~-~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 4 ILKLQVADQ-VSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred EEEEEEECC-CCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe
Confidence 578888999 999999999999999888888887765 4555555553
No 95
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=84.08 E-value=1.6 Score=27.50 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=31.0
Q ss_pred EEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEE
Q 031518 83 NVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAI 124 (158)
Q Consensus 83 ~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~ 124 (158)
-+.+..+ ||++.+|+..|.+.|.++...+....++...-.+
T Consensus 3 ~~~~~d~-~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~ 43 (69)
T cd04901 3 LHIHKNV-PGVLGQINTILAEHNINIAAQYLQTRGEIGYVVI 43 (69)
T ss_pred EEEecCC-CcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEE
Confidence 3577888 9999999999999999987766654445443334
No 96
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.94 E-value=10 Score=25.20 Aligned_cols=56 Identities=21% Similarity=0.162 Sum_probs=40.1
Q ss_pred EEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHH
Q 031518 84 VFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALL 145 (158)
Q Consensus 84 i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~ 145 (158)
+.-+.+ ||.|.+++..|+..|+++.+-.+-+..+ ..-+.|.++.++. .+.+++++.
T Consensus 5 ~~l~~~-~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~-----~~~i~~~l~ 61 (74)
T cd04929 5 FSLKNE-VGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD-----QRRLDELVQ 61 (74)
T ss_pred EEcCCC-CcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-----HHHHHHHHH
Confidence 334677 9999999999999999999999888754 3445666665421 135666663
No 97
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=83.76 E-value=3.8 Score=25.85 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=33.3
Q ss_pred EEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CCeEEEEEee
Q 031518 83 NVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DTFSLQAIGG 126 (158)
Q Consensus 83 ~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~v 126 (158)
-+..+.+ ||.+.++...|.+.|+++.+..++.. ++...-.+.+
T Consensus 3 ~v~~~d~-~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 3 VVRNTDR-PGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEeCCC-CCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 4678888 99999999999999999988776553 4555554544
No 98
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=83.39 E-value=0.7 Score=35.58 Aligned_cols=43 Identities=33% Similarity=0.410 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhHHHhhcCCCCCCCcccc---hHHHHHHHHHHHHH
Q 031518 4 REHKKAAALHEKLQLLRSITNSHALSKTS---IIVDASNYIEELKQ 46 (158)
Q Consensus 4 aER~RR~kln~~~~~LRslvP~~K~DKaS---il~dAI~YIk~Lq~ 46 (158)
.||+|=.-||+-|.+||.+.|....||-| -|.-|-.||--|=+
T Consensus 85 rerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 85 RERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 58999999999999999998844445544 46667777766644
No 99
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=80.68 E-value=17 Score=28.59 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=50.7
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC----CeEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD----TFSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~----~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
+.|.+.-.++ ||++..+-..|-++|+++.+-+..+.+ +.-+.....+.. -....+..+++.+|.......
T Consensus 96 ~~v~v~G~Dr-PGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~-lP~~~~~~~L~~~l~~l~~eL 169 (190)
T PRK11589 96 VWVQVEVADS-PHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAH-SPASQDAANIEQAFKALCTEL 169 (190)
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEE-cCCCCCHHHHHHHHHHHHHHh
Confidence 7899999999 999999999999999999888777664 222222222222 244566888998887765543
No 100
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=79.03 E-value=9.4 Score=25.25 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=34.2
Q ss_pred eEEEEEECCeEEEEEEecCCC-----CchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 70 QVTVKTLEKGFMINVFSKKSC-----PGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 70 ~V~V~~~~~~~~i~i~c~~~~-----~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
.|.+...++.+.|.+.++... ..-+..+-++|...|+.+.+.+++..
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 566777788899999998762 23567888999999999998877654
No 101
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=78.80 E-value=9 Score=28.54 Aligned_cols=40 Identities=28% Similarity=0.504 Sum_probs=35.0
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEE
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSL 121 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l 121 (158)
.|+++-+.+ ||.|.++..+|.+.|+++-.-++.-.++|-+
T Consensus 5 QISvFlENk-~GRL~~~~~~L~eagINiRA~tiAdt~dFGI 44 (142)
T COG4747 5 QISVFLENK-PGRLASVANKLKEAGINIRAFTIADTGDFGI 44 (142)
T ss_pred EEEEEecCC-cchHHHHHHHHHHcCCceEEEEeccccCcce
Confidence 478999999 9999999999999999999888877776643
No 102
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=77.93 E-value=2.4 Score=38.41 Aligned_cols=48 Identities=25% Similarity=0.325 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhHHHhhcC--CC--CC-CCcccchHHHHHHHHHHHHHHHHHH
Q 031518 4 REHKKAAALHEKLQLLRSI--TN--SH-ALSKTSIIVDASNYIEELKQKVERL 51 (158)
Q Consensus 4 aER~RR~kln~~~~~LRsl--vP--~~-K~DKaSil~dAI~YIk~Lq~~v~~L 51 (158)
+||-|=+.||+-|..|-.+ .+ .. .--|--||..|+.-|-.|++||++-
T Consensus 533 RERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 533 RERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 3555557799999999887 34 22 3478899999999999999999973
No 103
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.86 E-value=15 Score=23.37 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=26.5
Q ss_pred EEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 83 NVFSKKSCPGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 83 ~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
+|.-+.+ ||-|.++++.|.+ |.+|...+-...
T Consensus 2 ~v~ipdk-PG~l~~~~~~i~~-~~nI~~~~~~~~ 33 (68)
T cd04885 2 AVTFPER-PGALKKFLELLGP-PRNITEFHYRNQ 33 (68)
T ss_pred EEECCCC-CCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence 4666889 9999999999999 988887766554
No 104
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=77.45 E-value=14 Score=35.22 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=38.9
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CCeEEEEEeeee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DTFSLQAIGGEN 128 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~v~~ 128 (158)
+.|.|.+..+ +|+|.+|..+|.+.++++.++++... +++..-.+.++.
T Consensus 667 v~I~I~~~Dr-~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV 716 (743)
T PRK10872 667 LVVRVTANDR-SGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI 716 (743)
T ss_pred EEEEEEEcCC-CCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE
Confidence 5788999999 99999999999999999999998765 355433354554
No 105
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=76.96 E-value=24 Score=33.16 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=39.3
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee-CCeEEEEEeeee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT-DTFSLQAIGGEN 128 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~v~~ 128 (158)
+.|.|.+.++ +|+|.+|+.+|-+.+.++.+.++... +++..-.+.++.
T Consensus 611 v~I~I~~~dr-~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV 659 (683)
T TIGR00691 611 VDINIEAVDR-KGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI 659 (683)
T ss_pred EEEEEEEecC-CCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE
Confidence 6789999999 99999999999999999999999776 355443344544
No 106
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=76.35 E-value=25 Score=33.17 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=38.9
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC-CeEEEEEeeee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD-TFSLQAIGGEN 128 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~v~~ 128 (158)
+.|.|.+.++ +|+|.+|..+|.+.+.++.++++...+ ++..-.+.++.
T Consensus 627 v~i~I~~~dr-~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV 675 (702)
T PRK11092 627 AEIKVEMFNH-QGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA 675 (702)
T ss_pred EEEEEEEeCC-CCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE
Confidence 6789999999 999999999999999999999987765 44333344544
No 107
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=75.17 E-value=1.7 Score=35.84 Aligned_cols=45 Identities=31% Similarity=0.446 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN----SHALSKTSIIVDASNYIEELKQK 47 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP----~~K~DKaSil~dAI~YIk~Lq~~ 47 (158)
..||+|=-.||+-|..||.++| ..|+-|.=.|.=|=+||..|++-
T Consensus 78 aRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 78 ARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred chhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 4688788899999999999988 66777777888888888888753
No 108
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.05 E-value=20 Score=25.94 Aligned_cols=49 Identities=14% Similarity=0.006 Sum_probs=36.8
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeec
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENE 129 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~ 129 (158)
..+-+..+++ ||.|.++|..|...|+++.+-.+-+..+ ..-+.|.+...
T Consensus 42 tSlifsl~~~-pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie 91 (115)
T cd04930 42 ATLLFSLKEG-FSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE 91 (115)
T ss_pred EEEEEEeCCC-CcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE
Confidence 3444555788 9999999999999999999999888744 33355555554
No 109
>PRK11899 prephenate dehydratase; Provisional
Probab=74.01 E-value=26 Score=29.23 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=46.2
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC-CeEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD-TFSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
..|-+..+++ ||.|.++|..|...|++...-.+-+.. +..-+.|.++.. + ..+...++++|...
T Consensus 195 tsl~~~~~~~-pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e--g-~~~d~~v~~aL~~l 259 (279)
T PRK11899 195 TTFVFRVRNI-PAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE--G-HPEDRNVALALEEL 259 (279)
T ss_pred EEEEEEeCCC-CChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE--C-CCCCHHHHHHHHHH
Confidence 3344455678 999999999999999999999998875 456777888775 2 33444555555543
No 110
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=73.40 E-value=3.8 Score=23.20 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhHHHhhc
Q 031518 5 EHKKAAALHEKLQLLRS 21 (158)
Q Consensus 5 ER~RR~kln~~~~~LRs 21 (158)
=|+||+.|..+|..||+
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37899999999999985
No 111
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=73.36 E-value=25 Score=24.95 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=36.9
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEEee
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAIGG 126 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~v 126 (158)
...|.+..+.+ ||+|.+|...|..-|+++-+-+++..+ ++.--++++
T Consensus 8 ~~tisvlv~N~-pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv 56 (96)
T PRK08178 8 NVILELTVRNH-PGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV 56 (96)
T ss_pred CEEEEEEEECC-cCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE
Confidence 37789999999 999999999999998888887776664 444444444
No 112
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=72.63 E-value=5.2 Score=30.89 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhHHHhhcCCCC---CCCccc---chHHHHHHHHHHHHHH
Q 031518 5 EHKKAAALHEKLQLLRSITNS---HALSKT---SIIVDASNYIEELKQK 47 (158)
Q Consensus 5 ER~RR~kln~~~~~LRslvP~---~K~DKa---Sil~dAI~YIk~Lq~~ 47 (158)
||.|-+++|+.|.-|+++.|. .+|-+- .|=.|-|....|||.+
T Consensus 30 e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q~q 78 (173)
T KOG4447|consen 30 ERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQKQ 78 (173)
T ss_pred HHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHHHH
Confidence 777889999999999999882 222211 3345677777777774
No 113
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.89 E-value=27 Score=23.02 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=37.7
Q ss_pred cCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHhhhhcc
Q 031518 87 KKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIRNWSES 154 (158)
Q Consensus 87 ~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~~~~ 154 (158)
+.. ||.+.+|+++|...|++|-.... .. .--+|.+... + ....+.++.+|.+-+.++...
T Consensus 12 ~~~-~g~~~~IF~~La~~~I~VDmI~~--s~--~~iSftv~~~--d-~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 12 LHA-QGFLAKVFGILAKHNISVDLITT--SE--ISVALTLDNT--G-STSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCC-cCHHHHHHHHHHHcCCcEEEEee--cC--CEEEEEEecc--c-cchhHHHHHHHHHHHHhccEE
Confidence 455 89999999999999998887643 22 1122333321 1 222356666787777776543
No 114
>PRK14627 hypothetical protein; Provisional
Probab=69.20 E-value=30 Score=24.47 Aligned_cols=44 Identities=2% Similarity=0.149 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCceEEEEEECCeEEEEEEecCC
Q 031518 35 VDASNYIEELKQKVERLNRDIENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKS 89 (158)
Q Consensus 35 ~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~~V~V~~~~~~~~i~i~c~~~ 89 (158)
.+-.+-.+++|+++++++.+++.. +|+.+..|+-|.|.+.|...
T Consensus 4 ~~~mkqaq~mQ~km~~~Q~el~~~-----------~veg~sggG~VkV~~~G~~~ 47 (100)
T PRK14627 4 RQLMQMAQQMQRQMQKVQEELAAT-----------IVEGTAGGGAITVKMNGHRE 47 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-----------EEEEEEcCCeEEEEEEcCcc
Confidence 445667788999999998888654 35555444446666665544
No 115
>PRK14626 hypothetical protein; Provisional
Probab=66.28 E-value=36 Score=24.52 Aligned_cols=25 Identities=12% Similarity=0.420 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 031518 34 IVDASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
+++-++-.+++|++.++++++++..
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~ 31 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKE 31 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5567778889999999999988754
No 116
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=65.05 E-value=13 Score=35.13 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=48.6
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
..++|....+ +|+|..|+.+|. ++.-+.++|.+..+...|.+.. ..+-..+..++.+++
T Consensus 632 ~~~e~r~~dr-~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~-----~~~r~~~~~~~~~~~ 690 (693)
T PRK00227 632 NILEVRTEDR-RGALGALLGVLP----DLLWITASTPGATMIVQAALKP-----GFDRATVERDVTRVL 690 (693)
T ss_pred cEEEEEeCcc-ccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC-----cccHHHHHHHHHHHH
Confidence 5688899999 999999999999 8999999999999999898762 134556677776665
No 117
>PRK14623 hypothetical protein; Provisional
Probab=64.73 E-value=40 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 031518 34 IVDASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
+++-.+-.+++|+++++++.+++..
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~ 27 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTV 27 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777889999999999888754
No 118
>PRK14625 hypothetical protein; Provisional
Probab=64.41 E-value=40 Score=24.32 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 031518 34 IVDASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
+.+.++-.+++|++.++++.+++..
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~ 28 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAET 28 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777888999999999888754
No 119
>PRK14622 hypothetical protein; Provisional
Probab=63.45 E-value=42 Score=23.87 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCceEEEEEECCeEEEEEEecCC
Q 031518 34 IVDASNYIEELKQKVERLNRDIENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKS 89 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~~V~V~~~~~~~~i~i~c~~~ 89 (158)
+.+-.+-.+++|++.++++++++.. .|+.+.-|+-|.|.+.|.+.
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~-----------~v~g~sggG~VkV~~nG~~~ 47 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEI-----------AVEAESGGGLVKVAMNGKCE 47 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-----------EEEEEECCceEEEEEEcCce
Confidence 4556677788888888888887644 24444444445565555544
No 120
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=63.31 E-value=43 Score=23.62 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 031518 34 IVDASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
+++.++-.+++|+++++++.+++..
T Consensus 7 ~~~m~kqaq~mQ~k~~~~q~eL~~~ 31 (102)
T TIGR00103 7 LGELMKQAQQMQEKMKKLQEEIAQF 31 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5667778888999999999988754
No 121
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=63.13 E-value=11 Score=31.45 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHHHH
Q 031518 4 REHKKAAALHEKLQLLRSITN----SHALSKTSIIVDASNYIEELKQKVE 49 (158)
Q Consensus 4 aER~RR~kln~~~~~LRslvP----~~K~DKaSil~dAI~YIk~Lq~~v~ 49 (158)
.||+|=..||.-|..||-++| -+|.-|---|.=|-.||--|-..+.
T Consensus 181 rErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 181 RERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred HHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 588777999999999999999 3445566667778888887766554
No 122
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=62.36 E-value=18 Score=23.05 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=26.5
Q ss_pred EEEEEEec----CCCCchHHHHHHHHhhCCCeEEEEE
Q 031518 80 FMINVFSK----KSCPGLLVSILETFEELALNVLEAR 112 (158)
Q Consensus 80 ~~i~i~c~----~~~~gll~~il~aLe~l~L~V~~a~ 112 (158)
..|+|..+ .. ||++.++..+|-+-|++|....
T Consensus 7 ~~i~v~g~g~~~~~-~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDV-PGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTS-HHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCc-ccHHHHHHHHHHHCCCCEEEEE
Confidence 66788777 35 8999999999999999998766
No 123
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=61.30 E-value=59 Score=27.35 Aligned_cols=62 Identities=23% Similarity=0.209 Sum_probs=46.5
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHHH
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALLQ 146 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ 146 (158)
.|-+.-+.+ ||.|.++|..|...|++...-.+-...+ +.-+.|.++.. +..+...++++|..
T Consensus 196 sl~f~~~n~-PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e---g~~~~~~v~~AL~e 258 (279)
T COG0077 196 SLIFSVPNK-PGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE---GHIDDPLVKEALEE 258 (279)
T ss_pred EEEEEcCCC-CchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe---cCcCcHhHHHHHHH
Confidence 333445578 9999999999999999999999888864 66778888774 33444666666654
No 124
>PRK08198 threonine dehydratase; Provisional
Probab=60.66 E-value=74 Score=27.42 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=32.1
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEe
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSC 115 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~ 115 (158)
.+.+.|.=+.+ ||.|.++++.+.+.|.+|.+.+..-
T Consensus 327 ~~~l~v~l~D~-PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 327 YLKLRVRLPDR-PGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred EEEEEEEeCCC-CCHHHHHHHHHhhCCCceEEEEEEE
Confidence 37899999999 9999999999999999998877654
No 125
>PRK06382 threonine dehydratase; Provisional
Probab=60.64 E-value=55 Score=28.46 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=31.2
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEE
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVS 114 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is 114 (158)
.+.+.|.-+.+ ||.|.++++.|.+.+.+|++....
T Consensus 330 ~~rl~v~v~D~-pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 330 LVRIECNIPDR-PGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred EEEEEEEcCCC-CCHHHHHHHHHhcCCCcEEEEEEe
Confidence 37888899999 999999999999999999887654
No 126
>PRK14621 hypothetical protein; Provisional
Probab=59.77 E-value=53 Score=23.73 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCceEEEEEECCeEEEEEEecCC
Q 031518 34 IVDASNYIEELKQKVERLNRDIENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKS 89 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~~V~V~~~~~~~~i~i~c~~~ 89 (158)
+.+-.+-.+++|++.++++++++.. +|+.+.-++-|.|.+.|...
T Consensus 6 m~~mmkqaq~mQ~km~~~Q~eL~~~-----------~v~g~sGgG~VkV~~~G~~~ 50 (111)
T PRK14621 6 LGDMMKQIQQAGEKMQDVQKQLEKL-----------VAHGEAGGGMVKASVNGKQK 50 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-----------EEEEEECCceEEEEEEcCce
Confidence 4567777888888999888888644 24444434336666665554
No 127
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=58.90 E-value=78 Score=27.02 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=31.0
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEE
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVS 114 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is 114 (158)
+.+.|.-+.+ ||.|.++++.+.+.|.+|++....
T Consensus 306 ~~l~v~l~D~-pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 306 VRIETVLPDR-PGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEEeCCC-CCHHHHHHHHHhcCCCcEEEEEee
Confidence 6899999999 999999999999999999887654
No 128
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=58.37 E-value=32 Score=21.47 Aligned_cols=20 Identities=20% Similarity=0.637 Sum_probs=18.7
Q ss_pred CchHHHHHHHHhhCCCeEEE
Q 031518 91 PGLLVSILETFEELALNVLE 110 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~ 110 (158)
||.+.+++.+|.+.|+++..
T Consensus 15 ~gi~~~if~aL~~~~I~v~~ 34 (64)
T cd04937 15 PGVMAKIVGALSKEGIEILQ 34 (64)
T ss_pred cCHHHHHHHHHHHCCCCEEE
Confidence 89999999999999999963
No 129
>PRK14629 hypothetical protein; Provisional
Probab=58.25 E-value=57 Score=23.14 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 031518 36 DASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 36 dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
+..+-.+++|+++++++++++..
T Consensus 7 ~~mkqaq~mQ~km~~~Q~eL~~~ 29 (99)
T PRK14629 7 DFLKNMSSFKDNIDNIKKEISQI 29 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 35666788899999999888754
No 130
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=56.34 E-value=44 Score=20.34 Aligned_cols=34 Identities=9% Similarity=0.337 Sum_probs=25.1
Q ss_pred EEEEEec---CCCCchHHHHHHHHhhCCCeEEEEEEEe
Q 031518 81 MINVFSK---KSCPGLLVSILETFEELALNVLEARVSC 115 (158)
Q Consensus 81 ~i~i~c~---~~~~gll~~il~aLe~l~L~V~~a~is~ 115 (158)
.|.+.+. .. +|.+.+++++|.+.|+++.-..-+.
T Consensus 3 ~isvvg~~~~~~-~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGT-PGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCC-ccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3455553 34 8999999999999999997664433
No 131
>PRK14624 hypothetical protein; Provisional
Probab=56.23 E-value=67 Score=23.40 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 031518 34 IVDASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
+.+..+-.+++|+++++++++++..
T Consensus 8 m~~~mkqAq~mQ~km~~~QeeL~~~ 32 (115)
T PRK14624 8 MSEALSNMGNIREKMEEVKKRIASI 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6677778888888888888887654
No 132
>PRK00153 hypothetical protein; Validated
Probab=56.17 E-value=67 Score=22.55 Aligned_cols=25 Identities=4% Similarity=0.323 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 031518 34 IVDASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
+++-++-.+++|+++++++++++..
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~ 29 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQM 29 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566778889999999999888754
No 133
>PRK03762 hypothetical protein; Provisional
Probab=55.48 E-value=72 Score=22.74 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCceEEEEEECCeEEEEEEecCC
Q 031518 35 VDASNYIEELKQKVERLNRDIENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKS 89 (158)
Q Consensus 35 ~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~~V~V~~~~~~~~i~i~c~~~ 89 (158)
+.-.+-.+++|+++++++++++.. +|+.+.-|+-+.|.+.|.+.
T Consensus 8 ~~m~kqaqkmQ~km~~~Q~el~~~-----------~v~g~sggGlVkV~~nG~~~ 51 (103)
T PRK03762 8 SKLGEMLEQMQKKAKQLEEENANK-----------EFTAKSGGGLVSVSANGKGE 51 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-----------EEEEEEcCceEEEEEEcCce
Confidence 444556788899999998888744 24444433345555555444
No 134
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=53.56 E-value=1e+02 Score=26.90 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=43.8
Q ss_pred EEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 84 VFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 84 i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
+.-+++ ||.|.++|..|...|++...-.+-+..+ ..-+.|.++.. + ..+...+.++|...
T Consensus 302 ~~~~~~-pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e--g-~~~d~~~~~aL~~l 362 (386)
T PRK10622 302 MATGQQ-AGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ--A-NLRSAEMQKALKEL 362 (386)
T ss_pred EEcCCC-CcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe--C-CCCCHHHHHHHHHH
Confidence 334678 9999999999999999999999887765 45677777775 2 33334566655443
No 135
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=53.53 E-value=50 Score=20.15 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.5
Q ss_pred CchHHHHHHHHhhCCCeEEEEEE
Q 031518 91 PGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~i 113 (158)
+|...+|+++|++.|+++.....
T Consensus 14 ~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 14 VGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cCHHHHHHHHHHHcCCeEEEEec
Confidence 78999999999999999988743
No 136
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=52.49 E-value=47 Score=19.55 Aligned_cols=34 Identities=18% Similarity=0.448 Sum_probs=26.0
Q ss_pred EEEEEec---CCCCchHHHHHHHHhhCCCeEEEEEEEe
Q 031518 81 MINVFSK---KSCPGLLVSILETFEELALNVLEARVSC 115 (158)
Q Consensus 81 ~i~i~c~---~~~~gll~~il~aLe~l~L~V~~a~is~ 115 (158)
.|.|.+. .. +|.+.+++++|.+.++.+.....+.
T Consensus 2 ~i~i~g~~~~~~-~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGT-PGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCC-ccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4556544 44 7899999999999999998766544
No 137
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.43 E-value=56 Score=20.47 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=21.8
Q ss_pred CchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 91 PGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
+|.+.+++.+|.+.|++|.-..-++.
T Consensus 14 ~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 14 SLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 78999999999999999976655444
No 138
>PRK11898 prephenate dehydratase; Provisional
Probab=51.41 E-value=1.1e+02 Score=25.41 Aligned_cols=63 Identities=24% Similarity=0.208 Sum_probs=43.1
Q ss_pred EEEEEEecC-CCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHHH
Q 031518 80 FMINVFSKK-SCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALLQ 146 (158)
Q Consensus 80 ~~i~i~c~~-~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ 146 (158)
..+-+..+. + ||.|.++|..|...|+++.+-.+....+ ..-+.|.++.. + ..+...+.++|..
T Consensus 197 tslif~l~~~~-pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~e--g-~~~~~~~~~al~~ 261 (283)
T PRK11898 197 TSLVLTLPNNL-PGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVE--G-HIDDVLVAEALKE 261 (283)
T ss_pred EEEEEEeCCCC-ccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEE--c-cCCCHHHHHHHHH
Confidence 344455544 6 9999999999999999999999988754 34456666664 2 2344455555543
No 139
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=50.50 E-value=67 Score=20.75 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.0
Q ss_pred CchHHHHHHHHhhCCCeEEEEE
Q 031518 91 PGLLVSILETFEELALNVLEAR 112 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~ 112 (158)
+|.+.+++++|.+.|+++....
T Consensus 15 ~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 15 HGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred ccHHHHHHHHHHHcCCeEEEEE
Confidence 8999999999999999997764
No 140
>PRK00587 hypothetical protein; Provisional
Probab=50.28 E-value=89 Score=22.13 Aligned_cols=25 Identities=8% Similarity=0.341 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 031518 34 IVDASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
+++-.+-.+++|++.++++.+++..
T Consensus 3 ~~~lmkqaqkmQ~km~~~QeeL~~~ 27 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEK 27 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666788889999988888754
No 141
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.41 E-value=58 Score=19.75 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=34.6
Q ss_pred EEEEec---CCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 82 INVFSK---KSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 82 i~i~c~---~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
|.+.+. .. ||.+.+++.+|.+.|+++.-...+..+ .--++.+.. -+.....++|++.+
T Consensus 4 isivg~~~~~~-~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~------~d~~~~~~~lh~~~ 64 (66)
T cd04916 4 IMVVGEGMKNT-VGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHN------EDADKAVKAIYEEF 64 (66)
T ss_pred EEEEcCCCCCC-ccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH------HHHHHHHHHHHHHH
Confidence 444443 34 899999999999999999665543322 112233322 22345566666654
No 142
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=48.50 E-value=54 Score=27.05 Aligned_cols=53 Identities=11% Similarity=0.275 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHHHhHHHhhcCCCCCC-CcccchHHHHHH------------------HHHHHHHHHHHHHHhhh
Q 031518 1 MVSREHKKAAALHEKLQLLRSITNSHA-LSKTSIIVDASN------------------YIEELKQKVERLNRDIE 56 (158)
Q Consensus 1 mv~aER~RR~kln~~~~~LRslvP~~K-~DKaSil~dAI~------------------YIk~Lq~~v~~Le~e~~ 56 (158)
|-.-|| +-|...|..||..-...| -+=...|.+.|. =||.++.||++||.++.
T Consensus 1 M~~eE~---qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~ 72 (247)
T PF09849_consen 1 MTPEER---QLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQ 72 (247)
T ss_pred CchHHH---HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444454 678999999998744322 222244444432 27899999999999873
No 143
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.12 E-value=51 Score=22.46 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=28.8
Q ss_pred ecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CCeEEEE
Q 031518 86 SKKSCPGLLVSILETFEELALNVLEARVSCT--DTFSLQA 123 (158)
Q Consensus 86 c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~~~l~~ 123 (158)
|.++.|-++.++-.||..|++-+-+|.|.-. ++.--++
T Consensus 6 sGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEv 45 (77)
T cd04898 6 SGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEV 45 (77)
T ss_pred cCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEE
Confidence 3343388999999999999999999999653 4444333
No 144
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=47.59 E-value=1.2e+02 Score=22.98 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=44.3
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEE-EeeCCeEEEEEeeeecCCCCccCHHHHHHHHH
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARV-SCTDTFSLQAIGGENEEQGETIDAHVVKQALL 145 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~i-s~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~ 145 (158)
.+.+.+.-+++ -|.|+++++++-..+++|++.+= .+.+|..--++..... +..-+.++|-..|.
T Consensus 72 i~TL~l~ledr-~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s--sm~~~V~~ii~kl~ 136 (150)
T COG4492 72 IITLSLSLEDR-VGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS--SMEKDVDKIIEKLR 136 (150)
T ss_pred EEEEEEEEhhh-hhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch--hhhhhHHHHHHHHh
Confidence 38888999999 99999999999999999988654 3456654433433322 23345566655553
No 145
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=47.13 E-value=27 Score=18.36 Aligned_cols=17 Identities=18% Similarity=0.614 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhc
Q 031518 41 IEELKQKVERLNRDIEN 57 (158)
Q Consensus 41 Ik~Lq~~v~~Le~e~~~ 57 (158)
|..|+.++.+|++++..
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888887753
No 146
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=45.86 E-value=76 Score=20.08 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.7
Q ss_pred CchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 91 PGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
||++.+++++|.+.|+++.....++.
T Consensus 15 ~gv~~ki~~~L~~~~I~v~~i~~~~s 40 (66)
T cd04915 15 PGVLARGLAALAEAGIEPIAAHQSMR 40 (66)
T ss_pred chHHHHHHHHHHHCCCCEEEEEecCC
Confidence 78999999999999999976555443
No 147
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=43.64 E-value=63 Score=18.47 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.5
Q ss_pred CchHHHHHHHHhhCCCeEEEEEEE
Q 031518 91 PGLLVSILETFEELALNVLEARVS 114 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~is 114 (158)
+|.+.+++++|.+.++++.....+
T Consensus 14 ~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 14 PGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred CCHHHHHHHHHHHCCCcEEEEEcC
Confidence 799999999999999998765543
No 148
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=43.43 E-value=1.1e+02 Score=23.73 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=49.8
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHHHHHhhhhccc
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALLQVIRNWSESN 155 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~~~~~ 155 (158)
.+.+.-.+. ||.|.++...|...|+++-+-.+...+. -..+.+.+.. +..-..+++...|++.+..+...+
T Consensus 6 ilsvlv~ne-~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g~~~~~EQi~kQL~kLidV~kV~d 77 (163)
T COG0440 6 ILSLLVENE-PGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---GDEQVLEQIIKQLNKLIDVLKVLD 77 (163)
T ss_pred EEEEEEECC-CCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---CCcchHHHHHHHHHhhccceeEEE
Confidence 455667788 9999999999999999988888777643 2444444432 223456788888888777665443
No 149
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=42.49 E-value=78 Score=30.08 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=34.3
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT 118 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~ 118 (158)
+.|.|.-.++ +|+|.+|+++|-+.+.++.+++..+.++
T Consensus 628 ~~i~v~~~~r-~glL~~i~~~i~~~~~ni~~v~~~~~~~ 665 (701)
T COG0317 628 VDIEIRAYDR-SGLLRDVSQVLANEKINVLGVNTRSDKD 665 (701)
T ss_pred EEEEEEEccc-cchHHHHHHHHHhCCCceEEeeccccCC
Confidence 6688889999 9999999999999999999999988643
No 150
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=41.69 E-value=48 Score=21.99 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=23.4
Q ss_pred eEEEEEEC-CeEEEEEEecCCCCchHHHHHHHHhh
Q 031518 70 QVTVKTLE-KGFMINVFSKKSCPGLLVSILETFEE 103 (158)
Q Consensus 70 ~V~V~~~~-~~~~i~i~c~~~~~gll~~il~aLe~ 103 (158)
+-+|.... +++.+-|.|+++ .-+|.+|=-.+++
T Consensus 6 dW~Vsrt~dGdYrL~itcp~K-e~LlqSIEgmi~~ 39 (71)
T PF11619_consen 6 DWEVSRTLDGDYRLVITCPKK-EWLLQSIEGMIKE 39 (71)
T ss_dssp S-EEEEETTTCEEEEEEESSH-HHHHHHHHHHHHH
T ss_pred cceeeeccCCceEEEEecCcH-HHHHHHHHHHHHH
Confidence 46788875 459999999999 7676666555443
No 151
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=40.73 E-value=1.2e+02 Score=20.94 Aligned_cols=63 Identities=8% Similarity=0.152 Sum_probs=45.8
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CCeEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DTFSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
+.+.+.-..+ |+.|.+++...+--||-|...+.++. .|..---+.|. ..-+.+-+...|.+..
T Consensus 4 yqldl~ar~~-pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~-----s~R~~~lL~~QLeKl~ 68 (86)
T COG3978 4 YQLDLSARFN-PETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD-----SDRSVDLLTSQLEKLY 68 (86)
T ss_pred EEEeeeccCC-hHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc-----CCCChHHHHHHHHHHc
Confidence 4567778888 99999999999999999999999887 33332223343 2356666777666653
No 152
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.38 E-value=86 Score=19.10 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.1
Q ss_pred CchHHHHHHHHhhCCCeEEEEEEEe
Q 031518 91 PGLLVSILETFEELALNVLEARVSC 115 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~is~ 115 (158)
+|.+.+++++|.+.|+++.-..-+.
T Consensus 15 ~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 15 IGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred cCHHHHHHHHHHHCCCCEEEEEecC
Confidence 8999999999999999996655444
No 153
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=40.32 E-value=1.2e+02 Score=23.79 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=46.0
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CC---eEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DT---FSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~---~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
-+.+.+...++ ||++-++..-|..+|+++-+-..-+. .+ ..+|+-+..- -+.......|++.+...
T Consensus 92 ~v~v~v~a~Dr-pgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~--lPa~~~i~~l~~~f~al 162 (176)
T COG2716 92 PVWVYVDANDR-PGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITAR--LPANLSISALRDAFEAL 162 (176)
T ss_pred eEEEEEEecCC-ccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhcc--CCCcCcHHHHHHHHHHH
Confidence 38899999999 99999999999999987765444332 22 2444443221 25567778888777654
No 154
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=39.59 E-value=44 Score=25.94 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=29.7
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
+.+-|.-+.+ ||.|+++++-|.+.|-++++.--+.-
T Consensus 6 itldIEL~D~-PGQLl~vLqPls~~g~NiItIiH~r~ 41 (170)
T COG2061 6 ITLDIELKDK-PGQLLKVLQPLSKTGANIITIIHSRD 41 (170)
T ss_pred EEEEEEecCC-CcchhhhhcchhhcCccEEEEEeecC
Confidence 4566778889 99999999999999999987655544
No 155
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.16 E-value=84 Score=18.63 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.2
Q ss_pred CchHHHHHHHHhhCCCeEEEEEE
Q 031518 91 PGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~i 113 (158)
+|.+.+++.+|.+.++++.-.+.
T Consensus 14 ~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 14 PGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEc
Confidence 79999999999999999977653
No 156
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.49 E-value=70 Score=20.01 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=17.7
Q ss_pred CchHHHHHHHHhhCCCeEEEE
Q 031518 91 PGLLVSILETFEELALNVLEA 111 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a 111 (158)
+|++.+++++|.+.++.++..
T Consensus 14 ~gv~~~~~~~L~~~~i~~i~~ 34 (63)
T cd04920 14 LHKLGPALEVFGKKPVHLVSQ 34 (63)
T ss_pred ccHHHHHHHHHhcCCceEEEE
Confidence 899999999999988777543
No 157
>PRK08526 threonine dehydratase; Provisional
Probab=38.14 E-value=2.3e+02 Score=24.73 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=32.6
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
.+.+.+.-+.+ ||-|.+++..+-+.+.+|.+..-...
T Consensus 326 ~~~~~~~~~d~-pg~l~~~~~~~~~~~~~i~~~~~~r~ 362 (403)
T PRK08526 326 KMKLHVTLVDK-PGALMGLTDILKEANANIVKIDYDRF 362 (403)
T ss_pred EEEEEEEcCCC-CCHHHHHHHHHccCCCcEEEEEEEec
Confidence 48899999999 99999999999999999988777543
No 158
>PRK03094 hypothetical protein; Provisional
Probab=37.82 E-value=86 Score=21.47 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=32.1
Q ss_pred HHHHHHHHhhCCCeEEEEE-----------EEeeCC--------eEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 94 LVSILETFEELALNVLEAR-----------VSCTDT--------FSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 94 l~~il~aLe~l~L~V~~a~-----------is~~~~--------~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
|.+|-++|++-|.+|++-+ |.+-.+ ....+.++. ....|+++|.+.|..-
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~----A~G~TaeEI~~~ve~r 78 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVIT----ASGLTADEICQQVESR 78 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEE----cCCCCHHHHHHHHHHh
Confidence 7899999999999997543 211111 122233332 3468999999988654
No 159
>PRK14628 hypothetical protein; Provisional
Probab=37.48 E-value=1.6e+02 Score=21.45 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCceEEEEEECCeEEEEEEecCC
Q 031518 34 IVDASNYIEELKQKVERLNRDIENGQTSSDPNALPIQVTVKTLEKGFMINVFSKKS 89 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~~V~V~~~~~~~~i~i~c~~~ 89 (158)
+..+-+--+++|++.++++++++.. +|+.+.-|+-|.|.+.|...
T Consensus 21 m~q~~k~qq~mq~k~~elqe~l~~~-----------~v~g~sggG~VkV~~nG~~e 65 (118)
T PRK14628 21 LKDFAKMQEELQKKIQELEESFSQI-----------EVEASVGGGAVRIVATCDRR 65 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHce-----------EEEEEecCceEEEEEEcCce
Confidence 4445555555666666666655533 23433333445555555444
No 160
>PRK13847 conjugal transfer protein TraD; Provisional
Probab=37.25 E-value=57 Score=21.88 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=27.9
Q ss_pred CchHHHHHHHHHHHhHHHhhcCC-C--CCCCcccchHHHHHHHHHHH
Q 031518 1 MVSREHKKAAALHEKLQLLRSIT-N--SHALSKTSIIVDASNYIEEL 44 (158)
Q Consensus 1 mv~aER~RR~kln~~~~~LRslv-P--~~K~DKaSil~dAI~YIk~L 44 (158)
|...||++| .+++..|-.|| - ++..|+|.|+|-=+.--..|
T Consensus 5 ~~~~~Rkkd---TR~kIeLGGLVVKAGL~~~dra~llGaLl~~a~~L 48 (71)
T PRK13847 5 MTSDARKKD---TREKIELGGLIVKAGLRYEKRALLLGALIDAGRRI 48 (71)
T ss_pred hhhHHHHHH---HHHHHHhcceeeecCCCCccHHHHHHHHHHHHHHh
Confidence 345677666 56788899995 4 88889988887554433335
No 161
>smart00338 BRLZ basic region leucin zipper.
Probab=37.18 E-value=35 Score=21.67 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 031518 5 EHKKAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERLNRDIEN 57 (158)
Q Consensus 5 ER~RR~kln~~~~~LRslvP~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~~ 57 (158)
++++|.++..+-++-++ =.---.|+.+|+.++..|+.+...
T Consensus 4 ~k~~rR~~rNR~aA~~~------------R~rKk~~~~~Le~~~~~L~~en~~ 44 (65)
T smart00338 4 EKRRRRRERNREAARRS------------RERKKAEIEELERKVEQLEAENER 44 (65)
T ss_pred HHHHHHHHHhHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666665553 112345888888888888876543
No 162
>PF14992 TMCO5: TMCO5 family
Probab=37.05 E-value=46 Score=28.06 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=22.8
Q ss_pred cccch---HHHHHHHHHHHHHHHHHHHHhhh
Q 031518 29 SKTSI---IVDASNYIEELKQKVERLNRDIE 56 (158)
Q Consensus 29 DKaSi---l~dAI~YIk~Lq~~v~~Le~e~~ 56 (158)
|-+++ -.|+..||++||+.++.++.+.+
T Consensus 138 d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE 168 (280)
T PF14992_consen 138 DYQQVHQLCEDQANEIKKLKEKLRRMEEEKE 168 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 78999999999999999988654
No 163
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.09 E-value=37 Score=21.54 Aligned_cols=19 Identities=53% Similarity=0.798 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 031518 38 SNYIEELKQKVERLNRDIE 56 (158)
Q Consensus 38 I~YIk~Lq~~v~~Le~e~~ 56 (158)
-.|+.+|+.++..|+.+..
T Consensus 25 k~~~~~Le~~~~~L~~en~ 43 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENE 43 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 4688888888888877644
No 164
>PRK06349 homoserine dehydrogenase; Provisional
Probab=35.63 E-value=2.1e+02 Score=25.06 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=30.6
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEE
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVS 114 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is 114 (158)
.++|++....+ ||.|.+|-..|.+.++++.+..-.
T Consensus 348 ~yylRl~v~d~-pGvLa~I~~~f~~~~vsI~si~q~ 382 (426)
T PRK06349 348 KYYLRLLVADK-PGVLAKIAAIFAENGISIESILQK 382 (426)
T ss_pred eEEEEEEecCC-cchHHHHHHHHhhcCccEEEEEec
Confidence 49999999999 999999999999999988765443
No 165
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.49 E-value=1.4e+02 Score=19.79 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=23.2
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEE
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~i 113 (158)
..+.|.=+.+ ||-|.+++++|- +-+|....-
T Consensus 2 ~vl~v~ipD~-PG~L~~ll~~l~--~anI~~~~y 32 (85)
T cd04906 2 ALLAVTIPER-PGSFKKFCELIG--PRNITEFNY 32 (85)
T ss_pred eEEEEecCCC-CcHHHHHHHHhC--CCceeEEEE
Confidence 3577888999 999999999998 444444333
No 166
>PRK14126 cell division protein ZapA; Provisional
Probab=34.36 E-value=1.1e+02 Score=20.75 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=33.9
Q ss_pred HHHHHhHHHhhcCCCCCCCcccchHHHHHHHHH---HHHHHHHHHHHhhh
Q 031518 10 AALHEKLQLLRSITNSHALSKTSIIVDASNYIE---ELKQKVERLNRDIE 56 (158)
Q Consensus 10 ~kln~~~~~LRslvP~~K~DKaSil~dAI~YIk---~Lq~~v~~Le~e~~ 56 (158)
.-+|+++..++.-.|.-..+|++|+. |++... .++++++.|+++++
T Consensus 34 ~~vd~km~ei~~~~~~ls~~~iAVLa-ALNia~El~k~~~~~~~l~~~~~ 82 (85)
T PRK14126 34 AIVDDKMRELNEKNPSLDTSKLAVLT-AVNVIHDYIKLKEEYEKLKESMT 82 (85)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56899999999988888888999876 344333 45667777776654
No 167
>PLN02317 arogenate dehydratase
Probab=34.21 E-value=2.6e+02 Score=24.58 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=27.9
Q ss_pred EecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC
Q 031518 85 FSKKSCPGLLVSILETFEELALNVLEARVSCTDT 118 (158)
Q Consensus 85 ~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~ 118 (158)
.-+.+ ||.|.++|..|...++++.+..+-...+
T Consensus 289 sl~~~-pG~L~k~L~~Fa~~~INLtkIESRP~~~ 321 (382)
T PLN02317 289 SLEEG-PGVLFKALAVFALRDINLTKIESRPQRK 321 (382)
T ss_pred EcCCC-CchHHHHHHHHHHCCCCEEEEEeeecCC
Confidence 33567 9999999999999999999998877643
No 168
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.89 E-value=72 Score=21.03 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhc
Q 031518 32 SIIVDASNYIEELKQKVERLNRDIEN 57 (158)
Q Consensus 32 Sil~dAI~YIk~Lq~~v~~Le~e~~~ 57 (158)
+=|++|+.-+.+|+..++.|..+++.
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44899999999999999999988754
No 169
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=33.60 E-value=59 Score=24.28 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=21.6
Q ss_pred EEEecCCCCchHHHHHHHHhhCCCeEE
Q 031518 83 NVFSKKSCPGLLVSILETFEELALNVL 109 (158)
Q Consensus 83 ~i~c~~~~~gll~~il~aLe~l~L~V~ 109 (158)
-|..+.+ ||-|.+|+++|-+.++++-
T Consensus 73 aVEmeD~-PG~l~~I~~vl~d~diNld 98 (142)
T COG4747 73 AVEMEDV-PGGLSRIAEVLGDADINLD 98 (142)
T ss_pred EEEecCC-CCcHHHHHHHHhhcCcCce
Confidence 3567899 9999999999998876554
No 170
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=33.19 E-value=2.5e+02 Score=25.34 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=35.1
Q ss_pred CCeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CCeEEEEEee
Q 031518 77 EKGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DTFSLQAIGG 126 (158)
Q Consensus 77 ~~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~v 126 (158)
+++.++=+....+ ||.+..|...|-+.++++-+.+++.. ++..+-++.+
T Consensus 450 ~~~~~li~~~~D~-pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 450 PEGHMLIIRNRDR-PGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred CCceEEEEEeCCc-CChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 3344444566788 99999999999999999988888764 3444544433
No 171
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.84 E-value=1.1e+02 Score=18.31 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=20.6
Q ss_pred CchHHHHHHHHhhCCCeEEEEEEEe
Q 031518 91 PGLLVSILETFEELALNVLEARVSC 115 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~is~ 115 (158)
+|.+.+++++|.+.|+++.-..-+.
T Consensus 15 ~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 15 PGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecC
Confidence 7999999999999999986655433
No 172
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.48 E-value=57 Score=20.72 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 031518 5 EHKKAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERL 51 (158)
Q Consensus 5 ER~RR~kln~~~~~LRslvP~~K~DKaSil~dAI~YIk~Lq~~v~~L 51 (158)
=|.-|=..+.++..+..++-..+.| +|.+||+++-..++..
T Consensus 16 lR~~RHD~~NhLqvI~gllqlg~~~------~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 16 LRAQRHDFLNHLQVIYGLLQLGKYE------EAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HH------HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHH
Confidence 3556667777788888877666655 4689999999888876
No 173
>COG3474 Cytochrome c2 [Energy production and conversion]
Probab=32.42 E-value=54 Score=24.67 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=26.7
Q ss_pred HHHHHhHHHhhcCCCCCCC-----cccchHHHHHHHHHHH
Q 031518 10 AALHEKLQLLRSITNSHAL-----SKTSIIVDASNYIEEL 44 (158)
Q Consensus 10 ~kln~~~~~LRslvP~~K~-----DKaSil~dAI~YIk~L 44 (158)
+.|++-|..=+..+|-+|| .|---+.|-|.|++.+
T Consensus 91 ~~L~~fL~~Pkk~vpGTkM~faGlkk~~dradlIAYLk~~ 130 (135)
T COG3474 91 DNLDEFLTAPKKYVPGTKMAFAGLKKDQDRADLIAYLKSL 130 (135)
T ss_pred HHHHHHHhChhhhCCCcceeecCCCCHHHHHHHHHHHHhc
Confidence 3566777777778998888 4556689999999875
No 174
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=32.36 E-value=1.3e+02 Score=22.83 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHhhhcC
Q 031518 4 REHKKAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 4 aER~RR~kln~~~~~LRslvP~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
.+++-|..+.+.-..+++ .|--.+=-+|.| |++++.++++|++..
T Consensus 41 ~~~~l~~Ei~~l~~E~~~---------iS~qDeFAkwaK-l~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNA---------ISAQDEFAKWAK-LNRKLDKLEEELEKL 85 (161)
T ss_dssp HHHHHHHHHHHHHHHHTT---------S-TTTSHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc---------CCcHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 456666666666666666 344446667777 788888888877643
No 175
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=32.08 E-value=1.1e+02 Score=20.85 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=32.8
Q ss_pred hHHHHHHHHhhCCCeEEEEEEEe-----------eCC--------eEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 93 LLVSILETFEELALNVLEARVSC-----------TDT--------FSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 93 ll~~il~aLe~l~L~V~~a~is~-----------~~~--------~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
-|.+|-++|++-|.+|+.-.--. -.+ ....+.++ +....|+++|.+.|.+-+
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVI----nA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVI----NASGLTAEEIVQEVEERL 79 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEE----ecCCCCHHHHHHHHHHhh
Confidence 37899999999999998744221 110 11122222 245689999999887654
No 176
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.03 E-value=32 Score=26.38 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=37.1
Q ss_pred HHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHhhh
Q 031518 9 AAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERLNRDIE 56 (158)
Q Consensus 9 R~kln~~~~~LRslvP~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~ 56 (158)
+........++|.++.-..-|+++..+.=-.|++.++++++++++.++
T Consensus 124 ~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~ 171 (174)
T COG1076 124 KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171 (174)
T ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666644479999999999999999999999987654
No 177
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.83 E-value=1.6e+02 Score=19.64 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=24.8
Q ss_pred EEEEEecCCC--CchHHHHHHHHhhCCCeEEEEEE
Q 031518 81 MINVFSKKSC--PGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 81 ~i~i~c~~~~--~gll~~il~aLe~l~L~V~~a~i 113 (158)
+|+|....-. ||.+.+|+++|.+.|++|-....
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4555544332 89999999999999998887643
No 178
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=31.04 E-value=1.3e+02 Score=18.30 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=21.5
Q ss_pred cCCCCchHHHHHHHHhhCCCeEEEEEE
Q 031518 87 KKSCPGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 87 ~~~~~gll~~il~aLe~l~L~V~~a~i 113 (158)
+.. +|.+.+++.+|.+.|+++.-..-
T Consensus 10 ~~~-~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDK-PGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCC-CcHHHHHHHHHHHcCCeEEEEEe
Confidence 455 89999999999999999975443
No 179
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=30.72 E-value=86 Score=28.27 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=32.5
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD 117 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~ 117 (158)
.++|.|..| -|+..+|+..|-..++++....|...+
T Consensus 2 rl~~~~~dr-~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDR-LGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeecc-ccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 478999999 999999999999999999999986654
No 180
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=30.27 E-value=73 Score=21.19 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 031518 34 IVDASNYIEELKQKVERLNRDI 55 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~ 55 (158)
+..||+-|..||.++++|+.+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999998864
No 181
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=29.60 E-value=2.8e+02 Score=21.80 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=43.2
Q ss_pred EEEECCeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEEeeeecCCCCccCHHHHH
Q 031518 73 VKTLEKGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAIGGENEEQGETIDAHVVK 141 (158)
Q Consensus 73 V~~~~~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~v~~~~~~~~~~~~~l~ 141 (158)
|...+++.++=+....+ ||.+.+|-..|-+.++++-+.+++.-. +-.+-++.+ +..++.+.+.
T Consensus 142 vd~~~~g~~L~~~~~D~-PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v-----D~~v~~~vl~ 206 (208)
T TIGR00719 142 IEFRGEHPAILLEHNDK-FGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI-----DKNIDDHIKD 206 (208)
T ss_pred EEecCCccEEEEEeCCC-CChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe-----CCCCCHHHHh
Confidence 44444555555666778 999999999999999999999998753 444444433 3345555443
No 182
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=29.48 E-value=3.8e+02 Score=24.05 Aligned_cols=49 Identities=16% Similarity=0.071 Sum_probs=36.3
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeec
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENE 129 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~ 129 (158)
..|-+.-+.. ||.|.++|..|...|+++.+-.+-...+ ..-+.|.++.+
T Consensus 17 TSLiFsL~d~-pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~e 66 (436)
T TIGR01268 17 TSLIFSLKEE-AGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFD 66 (436)
T ss_pred EEEEEEcCCC-CcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEe
Confidence 3444555777 9999999999999999999998877643 22345556654
No 183
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=29.46 E-value=2.2e+02 Score=25.77 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=36.5
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeE-E-EEEeeeec
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFS-L-QAIGGENE 129 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~-l-~~~~v~~~ 129 (158)
..|-+.-+.. +|.|.++|..|+..|+++.+-.+-...+.. - +.|.+..+
T Consensus 32 tSLIFsL~d~-pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 32 LSIIFSLSNV-VGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred EEEEEECCCC-chHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 4444555777 999999999999999999999988875432 2 45555553
No 184
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=29.43 E-value=3.1e+02 Score=22.30 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=31.8
Q ss_pred eEEEEEEecCCCCc--hHHHHHHHHhhCCCeEEEEEEEeeC
Q 031518 79 GFMINVFSKKSCPG--LLVSILETFEELALNVLEARVSCTD 117 (158)
Q Consensus 79 ~~~i~i~c~~~~~g--ll~~il~aLe~l~L~V~~a~is~~~ 117 (158)
.+.++|.|... ++ +...+++.|++.++.+.+.++...+
T Consensus 142 ~~~~~v~~~~~-~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 142 RYILKVTCNKE-DESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred EEEEEEEEcCc-chhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 47899999887 54 5788889999999999999997653
No 185
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=28.68 E-value=1.7e+02 Score=19.02 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.3
Q ss_pred CchHHHHHHHHhhCCCeEEEEEE
Q 031518 91 PGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~i 113 (158)
+|.+.+|+++|.+.|+++-....
T Consensus 15 ~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 15 HGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred cCHHHHHHHHHHHcCCcEEEEEe
Confidence 89999999999999998877643
No 186
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=28.48 E-value=1.6e+02 Score=18.65 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.8
Q ss_pred CchHHHHHHHHhhCCCeEEEEEEE
Q 031518 91 PGLLVSILETFEELALNVLEARVS 114 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~is 114 (158)
+|.+.+++++|.+.++++.-.+.+
T Consensus 15 ~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 15 PGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred ccHHHHHHHHHHHCCCcEEEEEec
Confidence 799999999999999999766554
No 187
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=27.55 E-value=57 Score=20.03 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 031518 41 IEELKQKVERLNRDIENG 58 (158)
Q Consensus 41 Ik~Lq~~v~~Le~e~~~~ 58 (158)
|..|+++++.|+.++..+
T Consensus 1 i~aLrqQv~aL~~qv~~L 18 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRL 18 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 345666666666665544
No 188
>PRK06635 aspartate kinase; Reviewed
Probab=27.45 E-value=3.1e+02 Score=23.49 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=29.3
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD 117 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~ 117 (158)
-..|.+.+-...||.+.+++++|.+.|+++.....+...
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~ 300 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSE 300 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC
Confidence 366777652222899999999999999999976555433
No 189
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=27.33 E-value=3.4e+02 Score=23.39 Aligned_cols=89 Identities=9% Similarity=0.054 Sum_probs=51.5
Q ss_pred HHHHhHHHhhcC-CC-CCCCccc-----chHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCceEEEEEECCeEEEE
Q 031518 11 ALHEKLQLLRSI-TN-SHALSKT-----SIIVDASNYIEELKQKVERLNRDIENGQTSSDPNALPIQVTVKTLEKGFMIN 83 (158)
Q Consensus 11 kln~~~~~LRsl-vP-~~K~DKa-----Sil~dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~~V~V~~~~~~~~i~ 83 (158)
++=.+|+.||+. +| ++-.|-. +...+...|++.|++-+++|+..-.. .+....|-..|
T Consensus 176 ~~~~~l~~l~~~~p~pitg~e~~~~~~~~~~~~~~e~~~~L~~~l~el~~~~~~---------~~~~~RIl~tG------ 240 (380)
T TIGR02263 176 KLIQALYGLRADEPWKVPSADLYLLLRAGLVIPVEEHNQMLADYLAAARKQEAP---------IKDNCRVIICG------ 240 (380)
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhcccc---------CCCCCEEEEEC------
Confidence 334458888888 33 6655532 33566788999999888888752110 00101111111
Q ss_pred EEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCe
Q 031518 84 VFSKKSCPGLLVSILETFEELALNVLEARVSCTDTF 119 (158)
Q Consensus 84 i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~ 119 (158)
+.|+. + ..++++.+++.|..|+.-. .|.+..
T Consensus 241 ~~~~~---~-~~k~~~~iE~~G~~VV~dd-~c~g~r 271 (380)
T TIGR02263 241 MFCEQ---P-PLNLIKSIELSGCYIVDDD-FIIVHR 271 (380)
T ss_pred cCCCC---c-hHHHHHHHHHCCCEEEEec-CCccch
Confidence 22222 2 3789999999999999544 555543
No 190
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=27.29 E-value=2.4e+02 Score=21.36 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=35.9
Q ss_pred HHHHHHHhhC----CCeEEEEEEEeeCCeEE-EEEeeeecCCCCccCHHHHHHHHHHHHhhhh
Q 031518 95 VSILETFEEL----ALNVLEARVSCTDTFSL-QAIGGENEEQGETIDAHVVKQALLQVIRNWS 152 (158)
Q Consensus 95 ~~il~aLe~l----~L~V~~a~is~~~~~~l-~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~~ 152 (158)
..|-++++.+ |..+-++.++..+..+. ........=++..++.+++.+++..+....-
T Consensus 50 ~~I~~ai~~ae~~~~~~i~~V~v~i~g~~v~~~~~~~~i~i~~~~i~~~di~~~~~~a~~~~~ 112 (187)
T smart00842 50 RAIREAVEEAERMAGVKIDSVYVGISGRHLKSVNVSGVVAIPDKEITQEDIDRVLEAAKAVAL 112 (187)
T ss_pred HHHHHHHHHHHHHhCCcccEEEEEEcCCceEEEeeEEEEECCCCEECHHHHHHHHHHhhccCC
Confidence 3366666666 99988877766665442 2211111112456999999999988766433
No 191
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.92 E-value=74 Score=20.02 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q 031518 40 YIEELKQKVERLNRDIENG 58 (158)
Q Consensus 40 YIk~Lq~~v~~Le~e~~~~ 58 (158)
.++.+++++++++++.+.+
T Consensus 49 ~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3567777777777776543
No 192
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=26.11 E-value=1.5e+02 Score=17.47 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.3
Q ss_pred CchHHHHHHHHhhCCCeEEEEEE
Q 031518 91 PGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~i 113 (158)
+|.+.+++.+|.+.++++.-.+.
T Consensus 14 ~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 14 PGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred ccHHHHHHHHHHHCCCcEEEEEc
Confidence 79999999999999999977653
No 193
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=25.80 E-value=4.2e+02 Score=22.63 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=28.5
Q ss_pred CCeEEEEEE---ecCCCCchHHHHHHHHhhCCCeEEEEEE
Q 031518 77 EKGFMINVF---SKKSCPGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 77 ~~~~~i~i~---c~~~~~gll~~il~aLe~l~L~V~~a~i 113 (158)
.+-..|.|. -... +|.+.+++.+|.+.++++.....
T Consensus 258 ~~va~vsv~g~~~~~~-~g~~~~if~~L~~~~I~i~~i~~ 296 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGK-RGFLARIFGALAERNINVDLISQ 296 (401)
T ss_pred CCEEEEEEecCCCCCC-ccHHHHHHHHHHHcCCcEEEEEc
Confidence 344778887 3455 89999999999999999986554
No 194
>PF02465 FliD_N: Flagellar hook-associated protein 2 N-terminus; InterPro: IPR003481 The flagellar hook-associated protein 2 (HAP2 or FliD) is the capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum
Probab=25.53 E-value=1.7e+02 Score=19.86 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 031518 1 MVSREHKKAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERL 51 (158)
Q Consensus 1 mv~aER~RR~kln~~~~~LRslvP~~K~DKaSil~dAI~YIk~Lq~~v~~L 51 (158)
|+.+||.++.+|+.+...+-. |.+-+++--..+..|+..+..|
T Consensus 13 l~~~e~~~~~~l~~~~~~~~~--------k~sa~~~l~s~l~~l~~~~~~L 55 (99)
T PF02465_consen 13 LMQAERAPIDRLQQKKTSLEW--------KQSAYGSLNSKLSTLQSALSDL 55 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888887666553 3344444444444444444444
No 195
>PRK08210 aspartate kinase I; Reviewed
Probab=25.45 E-value=3.2e+02 Score=23.48 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=29.3
Q ss_pred CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEE
Q 031518 78 KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVS 114 (158)
Q Consensus 78 ~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is 114 (158)
+-..|+|......+|.+.+|+++|.+.|++|.....+
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 3477888765544899999999999999998877544
No 196
>COG3388 Predicted transcriptional regulator [Transcription]
Probab=25.44 E-value=1.2e+02 Score=21.61 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=29.7
Q ss_pred HHhhcC--CC-CCCCcccchHHH-HHHHHHHHHHHHHHHHHhhhc
Q 031518 17 QLLRSI--TN-SHALSKTSIIVD-ASNYIEELKQKVERLNRDIEN 57 (158)
Q Consensus 17 ~~LRsl--vP-~~K~DKaSil~d-AI~YIk~Lq~~v~~Le~e~~~ 57 (158)
|.||=| -. ++...+-.|+.| +++++.++...++++..+.++
T Consensus 47 YSLRVLEq~~iI~PS~~GAi~td~~~e~ie~i~~dl~ei~e~~~~ 91 (101)
T COG3388 47 YSLRVLEQENIISPSRQGAILTDDFPEFIEEIIGDLSEINEEAEN 91 (101)
T ss_pred hhhhhhhhcCccCccccCCccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 456655 22 555666777776 899999999999998876543
No 197
>PRK08818 prephenate dehydrogenase; Provisional
Probab=24.86 E-value=2.8e+02 Score=24.13 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=35.0
Q ss_pred EEEEEEec-CCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeec
Q 031518 80 FMINVFSK-KSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENE 129 (158)
Q Consensus 80 ~~i~i~c~-~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~ 129 (158)
..+.+.-+ ++ ||.|.+|+..|-..|+++.+-.++........ |.+...
T Consensus 296 ~~l~~~v~~d~-pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~ 344 (370)
T PRK08818 296 LTLSVYLPEDR-PGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFE 344 (370)
T ss_pred eEEEEECCCCC-CChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEe
Confidence 44445555 78 99999999999999999999988555444333 555543
No 198
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=24.67 E-value=76 Score=22.85 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-CCCCc
Q 031518 3 SREHKKAAALHEKLQLLRSITN-SHALS 29 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~~K~D 29 (158)
.+|+ |+..||+-+..|=+++| ++.-|
T Consensus 74 vae~-R~~~L~~Yl~~Ll~~p~~Is~~d 100 (109)
T cd07289 74 VAAK-RKVELNSYIQSLMNSSTEVAECD 100 (109)
T ss_pred HHHH-HHHHHHHHHHHHHcCChhhhcCh
Confidence 3566 99999999999999988 66544
No 199
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=24.07 E-value=79 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhc
Q 031518 32 SIIVDASNYIEELKQKVERLNRDIEN 57 (158)
Q Consensus 32 Sil~dAI~YIk~Lq~~v~~Le~e~~~ 57 (158)
-+||.||. |+|+.|+++++.+...
T Consensus 66 EvLG~AIQ--kHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 66 EVLGMAIQ--KHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHH--HHHHHHHHHhhhcccc
Confidence 35899997 8999999999876654
No 200
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=23.93 E-value=71 Score=22.87 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHhhcCCC-CCCC
Q 031518 4 REHKKAAALHEKLQLLRSITN-SHAL 28 (158)
Q Consensus 4 aER~RR~kln~~~~~LRslvP-~~K~ 28 (158)
+|+ ||..|++-+..|=+++| ++.-
T Consensus 77 ~e~-R~~~L~~Yl~~Ll~~~~~is~~ 101 (111)
T cd06884 77 AEK-RKQDIQQFLNSLFKMAEEVSHS 101 (111)
T ss_pred HHH-HHHHHHHHHHHHHcCCHHHhcC
Confidence 566 77889999999988877 6543
No 201
>PRK14637 hypothetical protein; Provisional
Probab=23.75 E-value=3.2e+02 Score=20.58 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=37.4
Q ss_pred CchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHH---HHHHHHHHHHh
Q 031518 91 PGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAH---VVKQALLQVIR 149 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~---~l~~~l~~ai~ 149 (158)
-|....+-.+++++|+++........++ .++.+++-+. ..++.+ .+.+++-.+|.
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~----~gV~iddC~~vSr~Is~~LD 66 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSA----GGVGLDDCARVHRILVPRLE 66 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECC----CCCCHHHHHHHHHHHHHHhc
Confidence 5778888889999999999999988765 4666665321 225444 45555544443
No 202
>PRK07431 aspartate kinase; Provisional
Probab=23.33 E-value=5.7e+02 Score=23.27 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=41.5
Q ss_pred EEEECCeEEEEEEec---CCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 73 VKTLEKGFMINVFSK---KSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 73 V~~~~~~~~i~i~c~---~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
+....+-..|.|... .. +|++.+++.+|.+.++++.... + .+..+. +++.. -+.+...++|++.+
T Consensus 342 i~~~~~~a~IsvvG~gm~~~-~gi~~ki~~aL~~~~I~i~~i~--s-Se~~Is-~vv~~------~d~~~av~~Lh~~f 409 (587)
T PRK07431 342 VLVETNVAKLSISGAGMMGR-PGIAAKMFDTLAEAGINIRMIS--T-SEVKVS-CVIDA------EDGDKALRAVCEAF 409 (587)
T ss_pred EEEeCCeEEEEEECCCcccC-ccHHHHHHHHHHHCCCcEEEEE--c-CCCEEE-EEEcH------HHHHHHHHHHHHHh
Confidence 444444566777665 34 8999999999999999997766 1 222222 22221 23566777777776
No 203
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.25 E-value=1.9e+02 Score=17.68 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=14.5
Q ss_pred CchHHHHHHHHhhCCCeE
Q 031518 91 PGLLVSILETFEELALNV 108 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V 108 (158)
||++.+++++|.+.++.+
T Consensus 15 ~~v~~~i~~~L~~i~i~~ 32 (64)
T cd04917 15 AGVEKRIFDALEDINVRM 32 (64)
T ss_pred cCHHHHHHHHHHhCCeEE
Confidence 899999999998654444
No 204
>PRK08210 aspartate kinase I; Reviewed
Probab=22.94 E-value=4.9e+02 Score=22.36 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=38.0
Q ss_pred EECCeEEEEEEec---CCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 75 TLEKGFMINVFSK---KSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 75 ~~~~~~~i~i~c~---~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
..++-.+|.|... .. ||.+.+++++|.+.++++.. +++ .+..+. +++.. -+.+...++|++++
T Consensus 335 ~~~~~a~isvvG~~~~~~-~g~~~~i~~aL~~~~I~i~~--~~~-s~~~is-~vv~~------~~~~~a~~~Lh~~f 400 (403)
T PRK08210 335 VRENCAKVSIVGAGMAGV-PGVMAKIVTALSEEGIEILQ--SAD-SHTTIW-VLVKE------EDMEKAVNALHDAF 400 (403)
T ss_pred EeCCcEEEEEEcCCcCCC-ccHHHHHHHHHHhCCCCEEE--Eec-CCCEEE-EEEcH------HHHHHHHHHHHHHh
Confidence 3334466666543 34 89999999999999999975 222 222222 22322 12455666677664
No 205
>PF07901 DUF1672: Protein of unknown function (DUF1672); InterPro: IPR012873 This family is composed of hypothetical bacterial proteins of unknown function.
Probab=22.84 E-value=3.6e+02 Score=22.73 Aligned_cols=49 Identities=12% Similarity=0.233 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCceEEEEEE---CCeEEEEEEecCCCCc
Q 031518 36 DASNYIEELKQKVERLNRDIENGQTSSDPNALPIQVTVKTL---EKGFMINVFSKKSCPG 92 (158)
Q Consensus 36 dAI~YIk~Lq~~v~~Le~e~~~~~~~s~~~~~p~~V~V~~~---~~~~~i~i~c~~~~~g 92 (158)
+|+.++++=++++++.-.+.=.. ....+|+|..+ ++++.|-|+|+.. |-
T Consensus 26 ~s~e~akkh~~ei~k~~~~yfkd-------~y~t~VKv~NVVga~dga~V~Veced~-~I 77 (277)
T PF07901_consen 26 KSIEFAKKHRKEIEKRAIQYFKD-------NYKTDVKVTNVVGARDGAVVYVECEDH-PI 77 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hcCceeEEEEEEccCCcEEEEEEecCC-Cc
Confidence 48888888888888765543111 23346888876 4679999999976 53
No 206
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=22.83 E-value=86 Score=14.55 Aligned_cols=12 Identities=33% Similarity=0.697 Sum_probs=8.6
Q ss_pred chHHHHHHHHhh
Q 031518 92 GLLVSILETFEE 103 (158)
Q Consensus 92 gll~~il~aLe~ 103 (158)
|++-++++||+.
T Consensus 1 gvmdsllealqt 12 (15)
T PF06345_consen 1 GVMDSLLEALQT 12 (15)
T ss_dssp -HHHHHHHHHHH
T ss_pred CcHHHHHHHHHc
Confidence 567788888864
No 207
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.80 E-value=2.3e+02 Score=18.44 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.5
Q ss_pred CchHHHHHHHHhhCCCeEEEEEE
Q 031518 91 PGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 91 ~gll~~il~aLe~l~L~V~~a~i 113 (158)
+|.+.+|+++|...|++|-....
T Consensus 15 ~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 15 VGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred cCHHHHHHHHHHHcCCcEEEEEe
Confidence 89999999999999999887643
No 208
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=22.44 E-value=1e+02 Score=17.87 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 031518 39 NYIEELKQKVERL 51 (158)
Q Consensus 39 ~YIk~Lq~~v~~L 51 (158)
.||+.|..++.+|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 5899998888775
No 209
>PRK06291 aspartate kinase; Provisional
Probab=22.33 E-value=5.5e+02 Score=22.72 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=40.3
Q ss_pred EEEECCeEEEEEEec---CCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 73 VKTLEKGFMINVFSK---KSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 73 V~~~~~~~~i~i~c~---~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
++...+-..|.|... .. +|++.+++.+|.+.|++|+-..-++.+-. +. +++.. -+.+...++|++.+
T Consensus 392 i~~~~~~a~IsvvG~gm~~~-~gv~~rif~aL~~~~I~v~~isqgsSe~~-Is-~vV~~------~d~~~av~~Lh~~f 461 (465)
T PRK06291 392 VTFDKDVCVVAVVGAGMAGT-PGVAGRIFSALGESGINIKMISQGSSEVN-IS-FVVDE------EDGERAVKVLHDEF 461 (465)
T ss_pred eEEeCCEEEEEEEcCCccCC-cChHHHHHHHHHHCCCCEEEEEeccccCe-EE-EEEeH------HHHHHHHHHHHHHh
Confidence 334444466666654 24 89999999999999999986554343222 21 22221 12455666666665
No 210
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=22.00 E-value=2.1e+02 Score=24.55 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHHhHHHhh---------cCCC-CCCCcccchHHHHHHHHHHHHHHHHHHHHhhh
Q 031518 1 MVSREHKKAAALHEKLQLLR---------SITN-SHALSKTSIIVDASNYIEELKQKVERLNRDIE 56 (158)
Q Consensus 1 mv~aER~RR~kln~~~~~LR---------slvP-~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~ 56 (158)
|++-=+.|...+......|- +++| ..+..=+.+|.++-+..+.|+..+++|.+.+.
T Consensus 31 MAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~ 96 (319)
T PF09789_consen 31 MAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLN 96 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555677788888776665 3444 33344456689999999998888888887653
No 211
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=21.41 E-value=62 Score=21.19 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=12.5
Q ss_pred hHHHHHHHHhhCCCeE
Q 031518 93 LLVSILETFEELALNV 108 (158)
Q Consensus 93 ll~~il~aLe~l~L~V 108 (158)
.+.++..+|+++|++|
T Consensus 60 ~~~Dv~~al~~~gi~v 75 (77)
T PF07524_consen 60 NLQDVEQALEEMGISV 75 (77)
T ss_pred CHHHHHHHHHHhCCCC
Confidence 4678888888888865
No 212
>PRK10118 flagellar hook-length control protein; Provisional
Probab=21.05 E-value=1.3e+02 Score=26.69 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=40.0
Q ss_pred CceEEEEEECCeEEEEEEecCCC-----CchHHHHHHHHhhCCCeEEEEEEEee
Q 031518 68 PIQVTVKTLEKGFMINVFSKKSC-----PGLLVSILETFEELALNVLEARVSCT 116 (158)
Q Consensus 68 p~~V~V~~~~~~~~i~i~c~~~~-----~gll~~il~aLe~l~L~V~~a~is~~ 116 (158)
|.+|.+++.++.+.|.+.+.+.. +.-|.++-++|.+-||..-+++|+.-
T Consensus 303 pLqI~L~v~~DQAqV~FvS~h~qVRdALE~amPrLRemLAeqGIqLgqssVS~e 356 (408)
T PRK10118 303 QVQISLKLDDNQAQLQMVSPHSHVRAALEAALPVLRTQLAESGIQLGQSNISSE 356 (408)
T ss_pred CeEEEEEEcCCeeEEEEecCCHHHHHHHHHHhHHHHHHHHHcCcCccccccccC
Confidence 44678888777799999888873 45788888999999999999999854
No 213
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.95 E-value=55 Score=24.51 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.0
Q ss_pred CCCCCCcccchHHHHHHHHHHHH
Q 031518 23 TNSHALSKTSIIVDASNYIEELK 45 (158)
Q Consensus 23 vP~~K~DKaSil~dAI~YIk~Lq 45 (158)
+|-.+-||-.-++||++||.++.
T Consensus 105 Ipd~dAdki~t~~da~~yI~~~~ 127 (131)
T KOG1748|consen 105 IPDEDADKIKTVRDAADYIADKP 127 (131)
T ss_pred cCcchhhhhCCHHHHHHHHHhcc
Confidence 45567799999999999998764
No 214
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.74 E-value=1.5e+02 Score=19.98 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 031518 34 IVDASNYIEELKQKVERLNRDIE 56 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~ 56 (158)
+.-||+-|.=||-.+++|+.+..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56789999999999999987654
No 215
>PRK09034 aspartate kinase; Reviewed
Probab=20.68 E-value=5.9e+02 Score=22.48 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=40.3
Q ss_pred EEEECCeEEEEEEec---CCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 73 VKTLEKGFMINVFSK---KSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 73 V~~~~~~~~i~i~c~---~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
+....+-..|.|... .. ||.+.+++++|.+.|++|.-..-++.+ ..+ ++.+.. -+.+...++|++.+
T Consensus 379 I~~~~~va~VsivG~g~~~~-~gv~arif~aL~~~~InV~mIsq~~Se-~~I-s~vV~~------~d~~~av~~LH~~f 448 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQT-VGVAAKITKALAEANINIQMINQGSSE-ISI-MFGVKN------EDAEKAVKAIYNAF 448 (454)
T ss_pred EEEeCCEEEEEEECCCCCCC-ccHHHHHHHHHHHCCCCEEEEEecCCc-ceE-EEEEcH------HHHHHHHHHHHHHH
Confidence 344444566777432 34 899999999999999999766543432 112 222322 12344566676665
No 216
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=20.65 E-value=1.4e+02 Score=18.17 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhHHHhhcCCC
Q 031518 5 EHKKAAALHEKLQLLRSITN 24 (158)
Q Consensus 5 ER~RR~kln~~~~~LRslvP 24 (158)
|=.||.++...|..--.++|
T Consensus 16 eT~rRR~~Q~~yN~~h~ItP 35 (44)
T PF12344_consen 16 ETNRRREIQIAYNKEHGITP 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 55678888999999999999
No 217
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=20.64 E-value=4.2e+02 Score=23.97 Aligned_cols=47 Identities=13% Similarity=0.302 Sum_probs=33.3
Q ss_pred CCeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEE
Q 031518 77 EKGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAI 124 (158)
Q Consensus 77 ~~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~ 124 (158)
+++.++=+....+ ||.+.+|...|-+.++++-+.+++... +..+-++
T Consensus 449 ~~~~~li~~~~D~-pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i 497 (525)
T TIGR01327 449 PEGIMLIILHLDK-PGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLL 497 (525)
T ss_pred cCccEEEEEecCc-CCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEE
Confidence 3343343556778 999999999999999999888776543 4444444
No 218
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=20.55 E-value=1.8e+02 Score=24.34 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhHHHhhcCCC-CCCCcccchHHHHHHHHHHHHHHHHHHHHh
Q 031518 5 EHKKAAALHEKLQLLRSITN-SHALSKTSIIVDASNYIEELKQKVERLNRD 54 (158)
Q Consensus 5 ER~RR~kln~~~~~LRslvP-~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e 54 (158)
=|.||.++.+++..|..--| ..| |..|++++..++.+
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s~k-------------l~~LeqELvraEae 180 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQSPK-------------LVVLEQELVRAEAE 180 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTT-------------HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCChH-------------HHHHHHHHHHHHHH
Confidence 37899999999999988766 433 45566666655554
No 219
>PRK11020 hypothetical protein; Provisional
Probab=20.38 E-value=1.6e+02 Score=21.58 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=30.8
Q ss_pred HHHHHHhHHHhhcCCC-CCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 031518 9 AAALHEKLQLLRSITN-SHALSKTSIIVDASNYIEELKQKVERLNR 53 (158)
Q Consensus 9 R~kln~~~~~LRslvP-~~K~DKaSil~dAI~YIk~Lq~~v~~Le~ 53 (158)
=++||++|..+|.=.+ ....+-+-+++.--+-+..|..++..|..
T Consensus 7 iq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 7 IKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999997655 44555556666666666666666666654
No 220
>PRK10738 hypothetical protein; Provisional
Probab=20.01 E-value=3.2e+02 Score=19.97 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCCeEEEEEEEeeCCe------EEEEEeeeecCCCCccCHHHHHHHHHHHHhhhhc
Q 031518 95 VSILETFEELALNVLEARVSCTDTF------SLQAIGGENEEQGETIDAHVVKQALLQVIRNWSE 153 (158)
Q Consensus 95 ~~il~aLe~l~L~V~~a~is~~~~~------~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~~~ 153 (158)
.++...++..++++-+..+...+.. .+..+.....=++..++.+.+.+++..++.++++
T Consensus 50 i~v~~~l~k~~~~~~~~~v~v~~~r~~~~p~~f~~I~~~~~~~g~~l~~e~~~rav~ls~~kyC~ 114 (134)
T PRK10738 50 IDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGKDLKDAAVARAVDLSAEKYCS 114 (134)
T ss_pred HHHHHHHHHCCCCcccEEEEEEEEEcccCCCcccEEEEEEEEECCCCCHHHHHHHHHHHHccCCc
Confidence 4667778888888877777654321 1111222111023458999999999988887444
Done!