Query 031518
Match_columns 158
No_of_seqs 120 out of 754
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 00:41:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.6E-16 5.4E-21 108.8 5.1 55 3-57 12-68 (82)
2 1nkp_B MAX protein, MYC proto- 99.5 9.2E-15 3.2E-19 99.9 6.2 55 3-57 8-65 (83)
3 4h10_B Circadian locomoter out 99.5 9.4E-15 3.2E-19 97.4 5.6 50 3-52 14-65 (71)
4 1hlo_A Protein (transcription 99.5 1.2E-14 4E-19 98.9 5.4 56 3-58 18-76 (80)
5 1nkp_A C-MYC, MYC proto-oncoge 99.5 4.3E-14 1.5E-18 97.9 6.4 53 3-55 12-68 (88)
6 1an4_A Protein (upstream stimu 99.5 1.7E-14 5.7E-19 94.4 3.1 46 3-48 11-63 (65)
7 4ati_A MITF, microphthalmia-as 99.5 7.3E-14 2.5E-18 101.6 5.8 52 3-54 33-89 (118)
8 4h10_A ARYL hydrocarbon recept 99.4 2E-14 6.8E-19 96.4 2.4 44 3-46 15-63 (73)
9 1a0a_A BHLH, protein (phosphat 99.4 2.8E-14 9.6E-19 93.1 0.8 46 3-48 8-61 (63)
10 1nlw_A MAD protein, MAX dimeri 99.4 6E-13 2.1E-17 90.6 6.5 55 3-57 7-65 (80)
11 3u5v_A Protein MAX, transcript 99.3 8.2E-13 2.8E-17 89.1 2.2 50 3-52 11-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.1 5.8E-11 2E-15 78.4 3.7 47 3-49 18-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 1.9E-10 6.4E-15 74.1 4.8 47 3-49 8-58 (60)
14 4f3l_A Mclock, circadian locom 98.9 7E-10 2.4E-14 92.8 4.8 45 3-47 18-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 4.8E-09 1.6E-13 88.8 3.7 45 3-47 19-68 (387)
16 2lfh_A DNA-binding protein inh 98.7 1.4E-09 4.8E-14 71.4 0.0 44 3-46 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 2.3E-06 7.8E-11 58.2 4.6 46 9-54 4-54 (83)
18 4aya_A DNA-binding protein inh 97.9 9.6E-06 3.3E-10 56.6 4.6 46 5-50 33-82 (97)
19 1zpv_A ACT domain protein; str 97.5 0.003 1E-07 41.9 11.4 68 80-151 6-73 (91)
20 1u8s_A Glycine cleavage system 97.0 0.0059 2E-07 46.2 9.5 66 79-150 6-72 (192)
21 2nyi_A Unknown protein; protei 96.6 0.0098 3.4E-07 45.4 8.6 47 79-127 5-52 (195)
22 2ko1_A CTR148A, GTP pyrophosph 96.3 0.032 1.1E-06 36.2 8.5 38 80-118 6-43 (88)
23 2nyi_A Unknown protein; protei 96.3 0.024 8.1E-07 43.2 8.7 67 79-151 93-166 (195)
24 1u8s_A Glycine cleavage system 96.2 0.045 1.5E-06 41.2 10.1 69 79-152 93-170 (192)
25 3obi_A Formyltetrahydrofolate 94.9 0.24 8.1E-06 40.3 10.3 70 78-151 5-77 (288)
26 3o1l_A Formyltetrahydrofolate 94.8 0.19 6.7E-06 41.2 9.6 68 79-150 22-92 (302)
27 3p96_A Phosphoserine phosphata 94.8 0.13 4.4E-06 42.9 8.7 67 79-149 12-79 (415)
28 3n0v_A Formyltetrahydrofolate 94.6 0.34 1.1E-05 39.4 10.5 69 78-151 7-78 (286)
29 3lou_A Formyltetrahydrofolate 94.1 0.36 1.2E-05 39.4 9.6 71 78-150 9-82 (292)
30 3nrb_A Formyltetrahydrofolate 92.6 1 3.5E-05 36.5 10.0 68 78-151 6-76 (287)
31 2jhe_A Transcription regulator 92.4 0.29 1E-05 35.2 6.0 37 81-119 2-38 (190)
32 2f1f_A Acetolactate synthase i 92.3 0.41 1.4E-05 35.8 6.8 47 80-127 4-52 (164)
33 2pc6_A Probable acetolactate s 90.9 1.4 4.8E-05 32.9 8.4 47 80-127 5-53 (165)
34 1y7p_A Hypothetical protein AF 89.0 1.7 5.9E-05 34.2 7.8 59 80-145 5-68 (223)
35 2fgc_A Acetolactate synthase, 89.0 1.2 4.1E-05 34.3 6.8 64 80-148 30-95 (193)
36 2f06_A Conserved hypothetical 74.4 19 0.00065 25.0 9.2 57 82-147 75-131 (144)
37 2wt7_A Proto-oncogene protein 72.1 8.2 0.00028 23.9 4.9 40 5-56 1-40 (63)
38 2qmx_A Prephenate dehydratase; 71.9 19 0.00064 29.0 8.2 64 80-147 201-265 (283)
39 2f06_A Conserved hypothetical 68.9 23 0.0008 24.5 7.4 38 80-118 7-44 (144)
40 2er8_A Regulatory protein Leu3 65.3 5.4 0.00019 24.7 3.0 23 37-59 47-69 (72)
41 3luy_A Probable chorismate mut 64.4 56 0.0019 26.8 9.7 56 88-147 217-273 (329)
42 2qmw_A PDT, prephenate dehydra 62.7 34 0.0012 27.2 7.9 63 80-147 187-253 (267)
43 2re1_A Aspartokinase, alpha an 62.4 40 0.0014 24.2 8.8 38 74-112 98-138 (167)
44 1xkm_B Distinctin chain B; por 60.2 9.6 0.00033 19.3 2.7 20 31-50 3-22 (26)
45 2rp4_A Transcription factor P5 58.0 8.4 0.00029 25.0 2.9 37 66-103 7-44 (76)
46 2rrl_A FLIK, flagellar HOOK-le 56.3 32 0.0011 25.7 6.3 79 38-116 68-153 (169)
47 3mwb_A Prephenate dehydratase; 55.9 44 0.0015 27.2 7.6 64 80-147 202-267 (313)
48 1zme_C Proline utilization tra 55.4 7.5 0.00026 23.8 2.3 20 38-57 43-62 (70)
49 2dtj_A Aspartokinase; protein- 55.3 53 0.0018 23.8 7.5 40 74-114 10-50 (178)
50 2lqj_A Mg2+ transport protein; 54.9 44 0.0015 22.2 6.8 65 80-149 9-76 (94)
51 1hwt_C Protein (heme activator 54.4 7 0.00024 24.7 2.1 22 38-59 57-78 (81)
52 2re1_A Aspartokinase, alpha an 54.2 20 0.00067 25.9 4.8 40 73-113 19-59 (167)
53 1dh3_A Transcription factor CR 53.9 8.6 0.00029 23.3 2.3 18 39-56 22-39 (55)
54 1gd2_E Transcription factor PA 53.7 10 0.00036 24.3 2.8 18 38-55 28-45 (70)
55 2xze_Q Charged multivesicular 52.3 6.9 0.00023 22.5 1.6 12 10-21 29-40 (40)
56 2dt9_A Aspartokinase; protein- 51.0 64 0.0022 23.0 7.7 40 73-113 10-50 (167)
57 2oqq_A Transcription factor HY 49.0 13 0.00043 21.6 2.3 16 39-54 3-18 (42)
58 2ocy_A RAB guanine nucleotide 45.5 38 0.0013 24.9 5.1 45 1-56 102-146 (154)
59 1ybx_A Conserved hypothetical 45.3 49 0.0017 24.0 5.6 25 34-58 43-67 (143)
60 3he4_B Synzip5; heterodimeric 45.0 18 0.00061 20.7 2.5 20 34-53 5-24 (46)
61 2l5g_A GPS2 protein, G protein 43.5 32 0.0011 19.4 3.4 28 28-55 4-31 (38)
62 1pyi_A Protein (pyrimidine pat 40.3 22 0.00076 23.0 2.9 21 38-58 47-67 (96)
63 1ygy_A PGDH, D-3-phosphoglycer 40.0 1.8E+02 0.0061 24.9 10.0 47 79-126 454-502 (529)
64 2dtj_A Aspartokinase; protein- 39.9 1E+02 0.0036 22.2 8.4 66 73-149 89-157 (178)
65 2dt9_A Aspartokinase; protein- 37.8 68 0.0023 22.9 5.5 66 73-149 89-157 (167)
66 4go7_X Aspartokinase; transfer 36.0 58 0.002 24.6 5.0 54 73-127 29-86 (200)
67 1a93_A Coiled coil, LZ, MYC pr 35.1 29 0.001 19.1 2.3 18 3-20 17-34 (34)
68 1j8b_A YBAB; hypothetical prot 35.0 60 0.0021 22.3 4.6 23 36-58 12-34 (112)
69 2acm_A Mucin-1; auto-catalytic 34.7 17 0.0006 22.8 1.5 24 31-54 24-48 (66)
70 3coq_A Regulatory protein GAL4 34.2 28 0.00095 22.1 2.6 22 38-59 44-65 (89)
71 3swk_A Vimentin; cytoskeleton, 33.9 98 0.0034 20.2 6.4 43 3-56 38-80 (86)
72 2dnr_A Synaptojanin-1; RRM dom 33.2 76 0.0026 21.1 4.7 37 78-115 8-49 (91)
73 2dgc_A Protein (GCN4); basic d 33.0 28 0.00097 21.6 2.3 20 37-56 28-47 (63)
74 1phz_A Protein (phenylalanine 31.4 77 0.0026 27.1 5.5 63 80-147 35-98 (429)
75 2akf_A Coronin-1A; coiled coil 31.3 42 0.0014 17.9 2.5 16 40-55 14-29 (32)
76 1g1e_B SIN3A; four-helix bundl 30.2 31 0.0011 22.8 2.3 16 34-49 10-25 (89)
77 3ab4_A Aspartokinase; aspartat 29.9 2.3E+02 0.008 23.3 10.3 39 74-113 259-298 (421)
78 1jnm_A Proto-oncogene C-JUN; B 29.3 35 0.0012 20.8 2.3 19 37-55 20-38 (62)
79 1g70_B RSG-1.2 peptide; peptid 29.3 22 0.00074 18.0 1.1 8 4-11 12-19 (26)
80 3mtj_A Homoserine dehydrogenas 29.3 63 0.0022 27.5 4.6 32 79-111 359-390 (444)
81 2jqq_A Conserved oligomeric go 29.1 19 0.00064 27.7 1.1 46 8-53 52-97 (204)
82 1e91_A Paired amphipathic heli 28.9 34 0.0012 22.4 2.3 18 33-50 6-23 (85)
83 3f42_A Protein HP0035; helicob 28.5 95 0.0033 20.9 4.6 17 42-58 13-29 (99)
84 1d66_A Protein (GAL4); protein 28.5 15 0.00051 22.0 0.4 15 38-52 51-65 (66)
85 3i00_A HIP-I, huntingtin-inter 27.9 60 0.002 22.8 3.6 25 32-56 33-57 (120)
86 3k5p_A D-3-phosphoglycerate de 26.1 1.5E+02 0.0052 24.9 6.4 54 67-122 332-385 (416)
87 2jee_A YIIU; FTSZ, septum, coi 24.7 66 0.0023 21.1 3.1 22 34-55 15-36 (81)
88 2czy_A Paired amphipathic heli 24.4 47 0.0016 21.2 2.3 17 34-50 4-20 (77)
89 1t2k_D Cyclic-AMP-dependent tr 24.2 50 0.0017 20.0 2.3 19 38-56 21-39 (61)
90 2cqn_A Formin-binding protein 23.3 1.4E+02 0.0047 19.0 4.5 25 3-28 4-29 (77)
91 2f05_A Paired amphipathic heli 22.8 50 0.0017 22.6 2.3 17 34-50 7-23 (105)
92 3ge3_E Toluene-4-monooxygenase 21.9 13 0.00045 25.6 -0.8 54 67-121 35-89 (103)
93 3fx7_A Putative uncharacterize 21.7 1.5E+02 0.0051 19.9 4.5 41 8-55 46-86 (94)
94 1pd7_B MAD1; PAH2, SIN3, eukar 20.7 1E+02 0.0035 15.9 3.1 19 28-46 2-20 (26)
95 1pd3_A Nonstructural protein N 20.3 76 0.0026 19.2 2.5 40 8-47 7-48 (58)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.64 E-value=1.6e-16 Score=108.81 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-C-CCCcccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 031518 3 SREHKKAAALHEKLQLLRSITN-S-HALSKTSIIVDASNYIEELKQKVERLNRDIEN 57 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~-~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~~ 57 (158)
.+||+||.+||+.|..||+++| . .|+||++||.+||+||++|+.+++.|+.+...
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~ 68 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999988 4 89999999999999999999999999987654
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.54 E-value=9.2e-15 Score=99.94 Aligned_cols=55 Identities=22% Similarity=0.414 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC---CCCCcccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 031518 3 SREHKKAAALHEKLQLLRSITN---SHALSKTSIIVDASNYIEELKQKVERLNRDIEN 57 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP---~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~~ 57 (158)
..||+||..||+.|..||+++| ..|++|++||..||+||+.|+.+++.|+.+.+.
T Consensus 8 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~ 65 (83)
T 1nkp_B 8 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998 489999999999999999999999998876543
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.53 E-value=9.4e-15 Score=97.36 Aligned_cols=50 Identities=14% Similarity=0.308 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC--CCCCcccchHHHHHHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN--SHALSKTSIIVDASNYIEELKQKVERLN 52 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP--~~K~DKaSil~dAI~YIk~Lq~~v~~Le 52 (158)
..||+||.+||+.|..|++|+| ..|+||+|||..||+||+.||.++.=|+
T Consensus 14 ~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 14 KSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4799999999999999999999 5699999999999999999999886554
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=1.2e-14 Score=98.87 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-C--CCCcccchHHHHHHHHHHHHHHHHHHHHhhhcC
Q 031518 3 SREHKKAAALHEKLQLLRSITN-S--HALSKTSIIVDASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~--~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
..||+||..||+.|..||+++| . .|++|++||..||+||+.|+.++++|+.+.+.+
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999 3 699999999999999999999999999987643
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=4.3e-14 Score=97.88 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-C---CCCcccchHHHHHHHHHHHHHHHHHHHHhh
Q 031518 3 SREHKKAAALHEKLQLLRSITN-S---HALSKTSIIVDASNYIEELKQKVERLNRDI 55 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~---~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~ 55 (158)
..||+||..||+.|..||+++| + .|++|++||.+||+||++|+.+...+..+.
T Consensus 12 ~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 12 VLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999 4 599999999999999999999988877654
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=1.7e-14 Score=94.38 Aligned_cols=46 Identities=30% Similarity=0.415 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-CC------CCcccchHHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN-SH------ALSKTSIIVDASNYIEELKQKV 48 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~~------K~DKaSil~dAI~YIk~Lq~~v 48 (158)
.+||+||.+||+.|..|++++| .. |+||++||.+||+||++||++.
T Consensus 11 ~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 11 EVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999998 43 7899999999999999999764
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.45 E-value=7.3e-14 Score=101.57 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-CC----CCcccchHHHHHHHHHHHHHHHHHHHHh
Q 031518 3 SREHKKAAALHEKLQLLRSITN-SH----ALSKTSIIVDASNYIEELKQKVERLNRD 54 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~~----K~DKaSil~dAI~YIk~Lq~~v~~Le~e 54 (158)
.+||+||.+||++|..|+++|| .+ |+||++||.+||+||+.||.+++.|+.+
T Consensus 33 ~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 33 LIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999 43 6789999999999999999999999875
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=2e-14 Score=96.36 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-C----CCCcccchHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN-S----HALSKTSIIVDASNYIEELKQ 46 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~----~K~DKaSil~dAI~YIk~Lq~ 46 (158)
.+||+||++||+.|..|++|+| . +|+||||||..||+||+.|+.
T Consensus 15 ~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 15 QIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999 4 799999999999999999974
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.41 E-value=2.8e-14 Score=93.07 Aligned_cols=46 Identities=28% Similarity=0.316 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-C-------CCCcccchHHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN-S-------HALSKTSIIVDASNYIEELKQKV 48 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~-------~K~DKaSil~dAI~YIk~Lq~~v 48 (158)
.+||+||.+||..|..|++|+| . ++..||++|..||+||++||+++
T Consensus 8 ~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 8 HAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp GGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999 3 45669999999999999999765
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=6e-13 Score=90.57 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-C---CCCcccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 031518 3 SREHKKAAALHEKLQLLRSITN-S---HALSKTSIIVDASNYIEELKQKVERLNRDIEN 57 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~---~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~~ 57 (158)
..||+||..||+.|..||+++| . +|+.|++||..|++||+.|+.+.+.|+.+.+.
T Consensus 7 ~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 7 EMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999 4 57889999999999999999999999887543
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.28 E-value=8.2e-13 Score=89.10 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-CCCCc----ccchHHHHHHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN-SHALS----KTSIIVDASNYIEELKQKVERLN 52 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-~~K~D----KaSil~dAI~YIk~Lq~~v~~Le 52 (158)
..||+||..||+.|..||.++| ..+.| |++||..||+||+.|++++++++
T Consensus 11 ~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 11 ALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999988 44455 45699999999999999999875
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.09 E-value=5.8e-11 Score=78.38 Aligned_cols=47 Identities=28% Similarity=0.471 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC---CCCCcccchHHHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN---SHALSKTSIIVDASNYIEELKQKVE 49 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP---~~K~DKaSil~dAI~YIk~Lq~~v~ 49 (158)
+.||+|+..||+.|..||.++| -.|+.|+.||..||+||..|++.++
T Consensus 18 ~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 18 MRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4699999999999999999998 4688999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.05 E-value=1.9e-10 Score=74.14 Aligned_cols=47 Identities=30% Similarity=0.408 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN----SHALSKTSIIVDASNYIEELKQKVE 49 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP----~~K~DKaSil~dAI~YIk~Lq~~v~ 49 (158)
..||+|+..||+.|..||.++| -.|+.|..+|.-||+||..|++.++
T Consensus 8 ~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 8 ARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999988 3488999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.92 E-value=7e-10 Score=92.85 Aligned_cols=45 Identities=13% Similarity=0.334 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC--CCCCcccchHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN--SHALSKTSIIVDASNYIEELKQK 47 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP--~~K~DKaSil~dAI~YIk~Lq~~ 47 (158)
.+||+||++||..|..|++|+| .+|+||+|||..||.||+.|+..
T Consensus 18 ~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 18 KSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4699999999999999999999 77999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.73 E-value=4.8e-09 Score=88.78 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC-----CCCCcccchHHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN-----SHALSKTSIIVDASNYIEELKQK 47 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP-----~~K~DKaSil~dAI~YIk~Lq~~ 47 (158)
.+||+||+++|+.|..|++++| .+|+||+|||..||.||+.|+..
T Consensus 19 ~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 19 QIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred chhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 4799999999999999999988 57999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.72 E-value=1.4e-09 Score=71.41 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHH
Q 031518 3 SREHKKAAALHEKLQLLRSITN----SHALSKTSIIVDASNYIEELKQ 46 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP----~~K~DKaSil~dAI~YIk~Lq~ 46 (158)
+.||+|+..||+-|..||.++| -+|+.|.-+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 6799999999999999999988 3588999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.15 E-value=2.3e-06 Score=58.16 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=39.9
Q ss_pred HHHHHHhHHHhhcCCC-C----CCCcccchHHHHHHHHHHHHHHHHHHHHh
Q 031518 9 AAALHEKLQLLRSITN-S----HALSKTSIIVDASNYIEELKQKVERLNRD 54 (158)
Q Consensus 9 R~kln~~~~~LRslvP-~----~K~DKaSil~dAI~YIk~Lq~~v~~Le~e 54 (158)
|..||+++..|..++| . .|..|.+||.-|++||+.||+..+.+..+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999988 3 37899999999999999999877766543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.94 E-value=9.6e-06 Score=56.62 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHHHHH
Q 031518 5 EHKKAAALHEKLQLLRSITN----SHALSKTSIIVDASNYIEELKQKVER 50 (158)
Q Consensus 5 ER~RR~kln~~~~~LRslvP----~~K~DKaSil~dAI~YIk~Lq~~v~~ 50 (158)
||.|=..+|+-|..||.++| -.|.-|.-+|--||+||..|+.-+++
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 57777899999999999988 45788999999999999999998875
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.47 E-value=0.003 Score=41.86 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=53.7
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
+.|.|.|+.+ ||++.+|...|-+.|.++.+.+....++...-.+.++.. + ..+.+.|.+.|.+....+
T Consensus 6 ~~l~v~~~Dr-pGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~-~~~l~~l~~~L~~~~~~~ 73 (91)
T 1zpv_A 6 AIITVVGKDK-SGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--E-KQDFTYLRNEFEAFGQTL 73 (91)
T ss_dssp EEEEEEESCC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--S-CCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--C-CCCHHHHHHHHHHHHHHc
Confidence 7899999999 999999999999999999999998877754433444442 2 457888999887765443
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.96 E-value=0.0059 Score=46.22 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=51.7
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHHHHHhh
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALLQVIRN 150 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~ 150 (158)
.+.|.|.|+.+ ||++..|..+|...|+++..+++....| |.+ .+.+... . .+.+.|++.|......
T Consensus 6 ~~~itv~~~Dr-pGiva~vt~~La~~g~NI~d~~~~~~~~~f~~-~~~v~~~--~--~~~~~l~~~L~~~~~~ 72 (192)
T 1u8s_A 6 HLVITAVGTDR-PGICNEVVRLVTQAGCNIIDSRIAMFGKEFTL-LMLISGS--P--SNITRVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEEC--H--HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCC-CcHHHHHHHHHHHCCCCEEeeeeeecCCceEE-EEEEecC--C--CCHHHHHHHHHHHHHh
Confidence 47899999999 9999999999999999999999987766 445 5555431 2 3567788888776653
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.63 E-value=0.0098 Score=45.41 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=40.2
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeee
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGE 127 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~ 127 (158)
.+.|.|.|+.+ ||++..|..+|.++|++++.+++.+..| |.+ .+.+.
T Consensus 5 ~~~ltv~~~Dr-pGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~ 52 (195)
T 2nyi_A 5 SFVVSVAGSDR-VGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVS 52 (195)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEE
T ss_pred EEEEEEEeCCC-CcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEE
Confidence 37899999999 9999999999999999999999987765 666 44444
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.33 E-value=0.032 Score=36.20 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=35.2
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT 118 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~ 118 (158)
+.|+|.++.+ ||+|.+|..+|.+.|+++.+.+....++
T Consensus 6 ~~l~v~~~Dr-~G~L~~I~~~la~~~inI~~i~~~~~~~ 43 (88)
T 2ko1_A 6 AGIRIVGEDK-NGMTNQITGVISKFDTNIRTIVLNAKDG 43 (88)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHTTSSSCEEEEEEEECSS
T ss_pred EEEEEEEECC-CcHHHHHHHHHHHCCCCeEEEEEEEcCC
Confidence 6788999999 9999999999999999999999988766
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.26 E-value=0.024 Score=43.24 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=50.9
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC------C-eEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD------T-FSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~------~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
.+.|.|.|+.+ ||++..|...|-++|+++.+++..+.+ + |.+...+ .. + ...+ +.|++.|......+
T Consensus 93 ~~iltv~g~Dr-pGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~-~~--~-~~~~-~~l~~~l~~~a~~l 166 (195)
T 2nyi_A 93 EYELYVEGPDS-EGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRV-AF--P-FPLY-QEVVTALSRVEEEF 166 (195)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEE-EE--E-GGGH-HHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCC-cCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEE-Ec--C-CCcc-HHHHHHHHHHHHHc
Confidence 38899999999 999999999999999999999998875 2 3333322 22 1 2345 88888888766554
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.23 E-value=0.045 Score=41.23 Aligned_cols=69 Identities=9% Similarity=0.094 Sum_probs=52.7
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC---------CeEEEEEeeeecCCCCccCHHHHHHHHHHHHh
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD---------TFSLQAIGGENEEQGETIDAHVVKQALLQVIR 149 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~---------~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~ 149 (158)
.+.|.|.|+.+ ||++..|...|.+.|+++..+...+.+ -|.+... +.. +...+.+.+++.|.....
T Consensus 93 ~~~l~v~~~D~-~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~---~~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 93 TVEVYVESDDK-LGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARV---DSGCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEESCC-TTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEE---CTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCC-ccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeC---CCCCCHHHHHHHHHHHHH
Confidence 37899999999 999999999999999999999998765 1222222 222 235688999999987766
Q ss_pred hhh
Q 031518 150 NWS 152 (158)
Q Consensus 150 ~~~ 152 (158)
.+.
T Consensus 168 ~~~ 170 (192)
T 1u8s_A 168 ALD 170 (192)
T ss_dssp HHT
T ss_pred HhC
Confidence 543
No 25
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=94.90 E-value=0.24 Score=40.32 Aligned_cols=70 Identities=10% Similarity=0.212 Sum_probs=52.2
Q ss_pred CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CC-eEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 78 KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DT-FSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 78 ~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
..+.|.+.|+.+ ||+...|...|-+.|.++.+++-... .| |.+...+ .. ++...+.+++++++...-.++
T Consensus 5 ~~~iLtv~g~Dr-pGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~--~~~~~~~~~L~~~f~~la~~~ 77 (288)
T 3obi_A 5 HQYVLTLSCPDR-AGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVF-NA--AAKVIPLASLRTGFGVIAAKF 77 (288)
T ss_dssp CEEEEEEEEECC-TTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE-EE--SSCCCCHHHHHHHHHHHHHHT
T ss_pred CeEEEEEECCCC-CCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEE-Ec--CCCCCCHHHHHHHHHHHHHHc
Confidence 357899999999 99999999999999999999887532 33 4444433 22 233578899999987654433
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=94.82 E-value=0.19 Score=41.16 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=51.8
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CC-eEEEEEeeeecCCCCccCHHHHHHHHHHHHhh
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DT-FSLQAIGGENEEQGETIDAHVVKQALLQVIRN 150 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~ 150 (158)
.+.+.+.|+.+ ||+...|...|-+.|.++.+++-... .| |.+.+.+ .. ++...+.+++++++...-.+
T Consensus 22 ~~iLtv~c~Dr-pGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~-~~--~~~~~~~~~L~~~l~~la~~ 92 (302)
T 3o1l_A 22 TFRLVIACPDR-VGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEI-RA--DTLPFDLDGFREAFTPIAEE 92 (302)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEE-EG--GGSSSCHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCC-CCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEE-ec--CCCCCCHHHHHHHHHHHHHH
Confidence 48899999999 99999999999999999999888764 33 5554332 21 23357889999998755443
No 27
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=94.80 E-value=0.13 Score=42.88 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=50.8
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCe-EEEEEeeeecCCCCccCHHHHHHHHHHHHh
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTF-SLQAIGGENEEQGETIDAHVVKQALLQVIR 149 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~-~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~ 149 (158)
.+.|++.|+.+ ||+...|...|-++|.++++++-...+|. .+... +.. ++...+.+.|++.|.....
T Consensus 12 ~~~lt~~g~Dr-~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~-~~~--~~~~~~~~~l~~~l~~~~~ 79 (415)
T 3p96_A 12 SVLITVTGVDQ-PGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVL-VCC--PADVADGPALRHDVEAAIR 79 (415)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEE-EEE--CHHHHTSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCC-CCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEE-EEe--cCCcCCHHHHHHHHHHHHH
Confidence 48899999999 99999999999999999999999888874 33333 222 1222355788888866543
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=94.63 E-value=0.34 Score=39.36 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=51.8
Q ss_pred CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEe--eCC-eEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 78 KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSC--TDT-FSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 78 ~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~--~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
..+.|.+.|+.+ ||++..|-..|-+.|.++.+++-.. ..| |.+.... .. ++ ..+.+++++++...-.++
T Consensus 7 ~~~vLtv~c~Dr-pGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~--~~-~~~~~~L~~~f~~la~~l 78 (286)
T 3n0v_A 7 DTWILTADCPSM-LGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEF-RQ--PD-DFDEAGFRAGLAERSEAF 78 (286)
T ss_dssp CCEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE-EC--CS-SCCHHHHHHHHHHHHGGG
T ss_pred CcEEEEEEeCCC-CCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEE-ec--CC-CCCHHHHHHHHHHHHHHc
Confidence 458899999999 9999999999999999999988873 233 4454332 22 22 578899999987654433
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=94.09 E-value=0.36 Score=39.35 Aligned_cols=71 Identities=8% Similarity=0.214 Sum_probs=50.4
Q ss_pred CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEe--eCC-eEEEEEeeeecCCCCccCHHHHHHHHHHHHhh
Q 031518 78 KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSC--TDT-FSLQAIGGENEEQGETIDAHVVKQALLQVIRN 150 (158)
Q Consensus 78 ~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~--~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~ 150 (158)
..+.+.+.|+.+ ||++..|...|-+.|.++.+++-.. ..| |.+.+.+ ....++...+.+++++++...-.+
T Consensus 9 ~~~vLtv~c~Dr-~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~~~~~~~~~~~L~~~f~~la~~ 82 (292)
T 3lou_A 9 HQFVLTLSCPSA-AGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVF-HATDDADALRVDALRREFEPIAER 82 (292)
T ss_dssp CEEEEEEEEESC-SCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE-EECC----CCHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCC-CCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEE-EccCcccCCCHHHHHHHHHHHHHh
Confidence 358899999999 9999999999999999999988873 233 5554322 211012247889999998765443
No 30
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=92.56 E-value=1 Score=36.48 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=47.0
Q ss_pred CeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CC-eEEEEEeeeecCCCCccCHHHHHHHHHHHHhhh
Q 031518 78 KGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DT-FSLQAIGGENEEQGETIDAHVVKQALLQVIRNW 151 (158)
Q Consensus 78 ~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~~~ 151 (158)
..+.|.+.|+.+ ||+...|...|-+.|.++.+++-... .| |.+.+.. .. ++ .+..++++++...-.++
T Consensus 6 ~~~vLtv~c~Dr-~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~--~~--~~~~~L~~~f~~la~~~ 76 (287)
T 3nrb_A 6 NQYVLSLACQDA-PGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV-EI--PV--AGVNDFNSAFGKVVEKY 76 (287)
T ss_dssp TEEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE-EC--CC-----CHHHHHHHHHHGGG
T ss_pred CeEEEEEECCCC-CCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE-Ec--CC--CCHHHHHHHHHHHHHHc
Confidence 358899999999 99999999999999999999888632 33 5554332 11 12 23447888876554433
No 31
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=92.37 E-value=0.29 Score=35.17 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=33.8
Q ss_pred EEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCe
Q 031518 81 MINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTF 119 (158)
Q Consensus 81 ~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~ 119 (158)
.|.|.|..+ +|+|.+|+.+|.+.++++..+++... |+
T Consensus 2 ~~~v~~~dr-~g~l~~i~~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDR-LGLTRELLDLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSC-TTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecC-CcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence 588999999 99999999999999999999999766 54
No 32
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=92.33 E-value=0.41 Score=35.84 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=38.6
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEEeee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAIGGE 127 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~v~ 127 (158)
..|.|..+++ ||+|.+|...|...|+++.+.++.... +...-++.+.
T Consensus 4 ~~IsV~v~Nr-pGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 4 RILSVLLENE-SGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred EEEEEEEeCC-CcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe
Confidence 5688999999 999999999999999999999987664 4444455554
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=90.89 E-value=1.4 Score=32.95 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=38.7
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC--CeEEEEEeee
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD--TFSLQAIGGE 127 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~v~ 127 (158)
..|.|..+++ ||+|.+|...|...|+++.+.++.... |...-++.+.
T Consensus 5 ~~IsV~veNr-pGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 5 HIISLLMENE-AGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEEECS-TTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEEeCC-CcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 5688999999 999999999999999999999987664 4454555554
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=89.02 E-value=1.7 Score=34.17 Aligned_cols=59 Identities=15% Similarity=0.052 Sum_probs=40.2
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeC-----CeEEEEEeeeecCCCCccCHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTD-----TFSLQAIGGENEEQGETIDAHVVKQALL 145 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~-----~~~l~~~~v~~~~~~~~~~~~~l~~~l~ 145 (158)
+.|.|.+.++ ||+|.+|+..|-+.+.++.+.+.+... +...-. ++.. .. ..+++-+.|.
T Consensus 5 VtL~I~a~DR-pGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~---d~-~Le~LL~kLr 68 (223)
T 1y7p_A 5 RGLRIIAENK-IGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIE---GG-DFEKILERVK 68 (223)
T ss_dssp EEEEEEEECC-TTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEEC---SS-CHHHHHHHHH
T ss_pred EEEEEEEcCC-CCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEEC---CC-CHHHHHHHHh
Confidence 6788999999 999999999999999999999998864 333222 4542 23 6666555553
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=88.99 E-value=1.2 Score=34.32 Aligned_cols=64 Identities=13% Similarity=0.299 Sum_probs=46.4
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC--eEEEEEeeeecCCCCccCHHHHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT--FSLQAIGGENEEQGETIDAHVVKQALLQVI 148 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~--~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai 148 (158)
..|.|..+++ ||.|.+|...|...|+++.+..+....+ ...-++++.. ..-..+.|...|.+.+
T Consensus 30 ~~LsVlVeN~-pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g----~e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 30 HLVSMLVHNK-PGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG----DDKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE----CTTHHHHHHHHHTTST
T ss_pred EEEEEEECCC-ChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC----CHHHHHHHHHHhcCcC
Confidence 6788899999 9999999999999999999988876543 4444555532 1334556666665543
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=74.42 E-value=19 Score=25.03 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=37.3
Q ss_pred EEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 82 INVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 82 i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
+-+.-+.+ ||.+.+++++|.+.|+++....++..++...-.+ .. -+.+...++|+++
T Consensus 75 v~v~~~d~-pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i--~~------~d~~~A~~~L~~~ 131 (144)
T 2f06_A 75 VGISCPNV-PGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI--RP------SNMDKCIEVLKEK 131 (144)
T ss_dssp EEEEEESS-TTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE--EE------SCHHHHHHHHHHT
T ss_pred EEEEeCCC-CcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE--Ee------CCHHHHHHHHHHc
Confidence 44566788 9999999999999999997655442333222222 22 1566666777653
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=72.05 E-value=8.2 Score=23.95 Aligned_cols=40 Identities=10% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHhhh
Q 031518 5 EHKKAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERLNRDIE 56 (158)
Q Consensus 5 ER~RR~kln~~~~~LRslvP~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~ 56 (158)
|+++|.+..++..+-|+ =.---.|+.+|+.+++.|+.+..
T Consensus 1 Ekr~rrrerNR~AA~rc------------R~rKk~~~~~Le~~v~~L~~~n~ 40 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC------------RNRRRELTDTLQAETDQLEDEKS 40 (63)
T ss_dssp CHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888876 12355777888888877776543
No 38
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=71.90 E-value=19 Score=28.95 Aligned_cols=64 Identities=14% Similarity=0.035 Sum_probs=47.0
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
..|-+.-+++ ||.|.++|..|...|++...-.+-...+ ..-+.|.++.+ +..+...+.++|...
T Consensus 201 tsl~f~~~~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e---g~~~d~~v~~aL~~L 265 (283)
T 2qmx_A 201 TSIVFALPNE-QGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI---GHREDQNVHNALENL 265 (283)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE---SCTTSHHHHHHHHHH
T ss_pred EEEEEEcCCC-CchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe---cCCCcHHHHHHHHHH
Confidence 3344445688 9999999999999999999999988865 45677777764 234446666666543
No 39
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=68.86 E-value=23 Score=24.54 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=31.2
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT 118 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~ 118 (158)
..|.|.-+.+ ||.+.+|...|.+.|+++-...+....+
T Consensus 7 ~~i~v~v~d~-~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 7 KQLSIFLENK-SGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEEECSS-SSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEEecCC-CcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 4577788999 9999999999999999998776654444
No 40
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=65.31 E-value=5.4 Score=24.74 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 031518 37 ASNYIEELKQKVERLNRDIENGQ 59 (158)
Q Consensus 37 AI~YIk~Lq~~v~~Le~e~~~~~ 59 (158)
.-.||.+|+.+|..|+..+..+.
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 34899999999999999887653
No 41
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=64.40 E-value=56 Score=26.76 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=43.9
Q ss_pred CCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 88 KSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 88 ~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
.+ ||.|.++|..|...|++...-.+-...+ ..-+.|.++.+ +..+...++++|...
T Consensus 217 ~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e---g~~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TG-PGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLD---AAPWEERFRDALVEI 273 (329)
T ss_dssp CS-TTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEES---SCTTSHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEe---CCcCCHHHHHHHHHH
Confidence 46 9999999999999999999999988876 45677777764 345556677777654
No 42
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=62.66 E-value=34 Score=27.19 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=45.5
Q ss_pred EEEEEEe---cCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 80 FMINVFS---KKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 80 ~~i~i~c---~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
..|-+.. +++ ||.|.++|..|...|++...-.+-...+ ..-+.|.++.+ ..+...+.++|...
T Consensus 187 tsl~f~~~~~~~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e----~~~d~~v~~aL~~L 253 (267)
T 2qmw_A 187 TSLMFLITPMHDK-PGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD----SAITTDIKKVIAIL 253 (267)
T ss_dssp SEEEEEEEESSCC-TTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES----CCSCHHHHHHHHHH
T ss_pred EEEEEEcCCCCCC-cChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe----cCCcHHHHHHHHHH
Confidence 4454566 678 9999999999999999999999988865 34555666552 34445666666543
No 43
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=62.36 E-value=40 Score=24.16 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=29.6
Q ss_pred EEECCeEEEEEEecC---CCCchHHHHHHHHhhCCCeEEEEE
Q 031518 74 KTLEKGFMINVFSKK---SCPGLLVSILETFEELALNVLEAR 112 (158)
Q Consensus 74 ~~~~~~~~i~i~c~~---~~~gll~~il~aLe~l~L~V~~a~ 112 (158)
....+-..|.|.... . ||.+.+++++|.+.|+++....
T Consensus 98 ~~~~~~a~vsvvG~~m~~~-~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 98 DGDDTVCKVSAVGLGMRSH-VGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEESSEEEEEEECSSCTTC-CCHHHHHHHHHHHTTCCCCEEE
T ss_pred EecCCEEEEEEECCCcCCC-cCHHHHHHHHHHHCCCcEEEEE
Confidence 334445777777665 6 9999999999999999998743
No 44
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=60.23 E-value=9.6 Score=19.34 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=16.3
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 031518 31 TSIIVDASNYIEELKQKVER 50 (158)
Q Consensus 31 aSil~dAI~YIk~Lq~~v~~ 50 (158)
.|-+-+|-+|+.+|.++++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 36678899999999988764
No 45
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=58.01 E-value=8.4 Score=25.02 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=27.9
Q ss_pred CCCceEEEEEEC-CeEEEEEEecCCCCchHHHHHHHHhh
Q 031518 66 ALPIQVTVKTLE-KGFMINVFSKKSCPGLLVSILETFEE 103 (158)
Q Consensus 66 ~~p~~V~V~~~~-~~~~i~i~c~~~~~gll~~il~aLe~ 103 (158)
..|.+-+|.... +++.+-|+|+++ +-+|.+|=-.+++
T Consensus 7 ~~p~dW~VsRt~dGdYrL~itcpkK-e~LLqSIEgmik~ 44 (76)
T 2rp4_A 7 DSAAEWNVSRTPDGDYRLAITCPNK-EWLLQSIEGMIKE 44 (76)
T ss_dssp CSSCCCEEECCTTTBEEEEEEESCH-HHHHHHHHHHHHH
T ss_pred CCCccceeeeccCCceEEEEEeCcH-HHHHHHHHHHHHH
Confidence 467788999886 459999999999 7777666555443
No 46
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=56.27 E-value=32 Score=25.68 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHhhh-cCCCCCCCCC-CCceEEEEEECCeEEEEEEecCCC-----CchHHHHHHHHhhCCCeEEE
Q 031518 38 SNYIEELKQKVERLNRDIE-NGQTSSDPNA-LPIQVTVKTLEKGFMINVFSKKSC-----PGLLVSILETFEELALNVLE 110 (158)
Q Consensus 38 I~YIk~Lq~~v~~Le~e~~-~~~~~s~~~~-~p~~V~V~~~~~~~~i~i~c~~~~-----~gll~~il~aLe~l~L~V~~ 110 (158)
..|..+|-+++.-+-.+-. ...-.-+|.. -+.+|.+++.++.+.+.+..+... ..-+.++-++|.+-||.+-+
T Consensus 68 ~~w~qqL~qqI~~~~~~g~q~a~IrL~PpeLG~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~ 147 (169)
T 2rrl_A 68 HEWQQTFSQQVMLFTRQGQQSAQLRLHPEELGQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQ 147 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECCSSGGGCCEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEEECccccCcEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeee
Confidence 4788888888877643211 1100012222 234677777788899999988872 45677888999999999999
Q ss_pred EEEEee
Q 031518 111 ARVSCT 116 (158)
Q Consensus 111 a~is~~ 116 (158)
++|+.-
T Consensus 148 v~Vs~~ 153 (169)
T 2rrl_A 148 SSISSE 153 (169)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 999764
No 47
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=55.93 E-value=44 Score=27.22 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=45.2
Q ss_pred EEEEEEec-CCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 80 FMINVFSK-KSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 80 ~~i~i~c~-~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
..|-+.-+ ++ ||.|.++|..|...|++...-.+-...+ ..-+.|.+..+ +..+...+.++|...
T Consensus 202 TSl~f~~~~~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e---g~~~d~~v~~aL~~L 267 (313)
T 3mwb_A 202 TTVVVPLPEDH-PGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD---GHATDSRVADALAGL 267 (313)
T ss_dssp EEEEEECSSCC-TTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE---SCTTSHHHHHHHHHH
T ss_pred EEEEEEeCCCC-CCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe---CCCCcHHHHHHHHHH
Confidence 44445554 67 9999999999999999999999888754 34456666654 234555666666543
No 48
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=55.39 E-value=7.5 Score=23.81 Aligned_cols=20 Identities=10% Similarity=0.436 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 031518 38 SNYIEELKQKVERLNRDIEN 57 (158)
Q Consensus 38 I~YIk~Lq~~v~~Le~e~~~ 57 (158)
-.||..|+.++..|+..+..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888877654
No 49
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=55.33 E-value=53 Score=23.83 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=29.0
Q ss_pred EEECCeEEEEEE-ecCCCCchHHHHHHHHhhCCCeEEEEEEE
Q 031518 74 KTLEKGFMINVF-SKKSCPGLLVSILETFEELALNVLEARVS 114 (158)
Q Consensus 74 ~~~~~~~~i~i~-c~~~~~gll~~il~aLe~l~L~V~~a~is 114 (158)
....+-..|.|. -+.+ ||.+.+|++.|.+.|++|--...+
T Consensus 10 a~~~~~~~Itv~~~~~~-~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 10 ATDKSEAKVTVLGISDK-PGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp EEECSEEEEEEEEEECS-TTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EecCCEEEEEEecCCCC-ccHHHHHHHHHHHcCCCEEEEEcC
Confidence 333455788884 5777 999999999999999555544333
No 50
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=54.93 E-value=44 Score=22.23 Aligned_cols=65 Identities=8% Similarity=0.006 Sum_probs=46.1
Q ss_pred EEEEEEecCCC-CchHHHHHHHHhhCCCeEEEEEEEeeC-CeE-EEEEeeeecCCCCccCHHHHHHHHHHHHh
Q 031518 80 FMINVFSKKSC-PGLLVSILETFEELALNVLEARVSCTD-TFS-LQAIGGENEEQGETIDAHVVKQALLQVIR 149 (158)
Q Consensus 80 ~~i~i~c~~~~-~gll~~il~aLe~l~L~V~~a~is~~~-~~~-l~~~~v~~~~~~~~~~~~~l~~~l~~ai~ 149 (158)
+.|.|.|.... ..+..-++++|+..++.+.+..+..++ +.+ +.+..... ..+..+|.+.+-+.-.
T Consensus 9 Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at-----~~~~~~Le~iv~rLs~ 76 (94)
T 2lqj_A 9 YQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMV-----GHTPAKLERLVAELSL 76 (94)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEE-----SCCHHHHHHHHHHHHH
T ss_pred EEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEec-----CCCHHHHHHHHHHHhC
Confidence 88999999884 357778889999999999999866543 334 66665543 4566667666655533
No 51
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=54.36 E-value=7 Score=24.70 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q 031518 38 SNYIEELKQKVERLNRDIENGQ 59 (158)
Q Consensus 38 I~YIk~Lq~~v~~Le~e~~~~~ 59 (158)
-.||..|+.+|..||..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999998776543
No 52
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=54.18 E-value=20 Score=25.90 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=30.9
Q ss_pred EEEECCeEEEEEEe-cCCCCchHHHHHHHHhhCCCeEEEEEE
Q 031518 73 VKTLEKGFMINVFS-KKSCPGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 73 V~~~~~~~~i~i~c-~~~~~gll~~il~aLe~l~L~V~~a~i 113 (158)
|....+-..|.|.. +.+ ||.+.+|+++|.+.|++|.....
T Consensus 19 Ia~~~~~~~i~v~~~~~~-~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDK-PGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp EEEECCCEEEEEEEEECC-TTHHHHHHHHHHTTTCCCCCEEE
T ss_pred EEecCCEEEEEEecCCCC-cCHHHHHHHHHHHcCCeEEEEEc
Confidence 33444558888884 788 99999999999999988766543
No 53
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.93 E-value=8.6 Score=23.35 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 031518 39 NYIEELKQKVERLNRDIE 56 (158)
Q Consensus 39 ~YIk~Lq~~v~~Le~e~~ 56 (158)
.|+.+|+.+|..|+.+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~ 39 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNK 39 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988754
No 54
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.69 E-value=10 Score=24.28 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 031518 38 SNYIEELKQKVERLNRDI 55 (158)
Q Consensus 38 I~YIk~Lq~~v~~Le~e~ 55 (158)
-.||++|+.+|.+|+...
T Consensus 28 ~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 479999999999998654
No 55
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=52.25 E-value=6.9 Score=22.55 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=10.4
Q ss_pred HHHHHhHHHhhc
Q 031518 10 AALHEKLQLLRS 21 (158)
Q Consensus 10 ~kln~~~~~LRs 21 (158)
+.|..||.+|||
T Consensus 29 ~~MqsRLaALRS 40 (40)
T 2xze_Q 29 EAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 469999999997
No 56
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=51.00 E-value=64 Score=22.99 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=29.4
Q ss_pred EEEECCeEEEEEEe-cCCCCchHHHHHHHHhhCCCeEEEEEE
Q 031518 73 VKTLEKGFMINVFS-KKSCPGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 73 V~~~~~~~~i~i~c-~~~~~gll~~il~aLe~l~L~V~~a~i 113 (158)
|....+-..|.|.. +.+ ||.+.+++.+|.+.|++|.....
T Consensus 10 Ia~~~~~a~Itv~g~~~~-~G~~a~if~~La~~~InVd~I~q 50 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQ-PGIAAKVFQALAERGIAVDMIIQ 50 (167)
T ss_dssp EEEECSEEEEEEEEEECS-TTHHHHHHHHHHHHTCCCSCEEB
T ss_pred EEEeCCEEEEEEecCCCC-CCHHHHHHHHHHHcCCcEEEEEc
Confidence 34444557777765 566 89999999999999887766443
No 57
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=48.97 E-value=13 Score=21.58 Aligned_cols=16 Identities=31% Similarity=0.682 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 031518 39 NYIEELKQKVERLNRD 54 (158)
Q Consensus 39 ~YIk~Lq~~v~~Le~e 54 (158)
.|+.+|+.++++|+..
T Consensus 3 aYl~eLE~r~k~le~~ 18 (42)
T 2oqq_A 3 AYLSELENRVKDLENK 18 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4788888888887764
No 58
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.52 E-value=38 Score=24.94 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHhhh
Q 031518 1 MVSREHKKAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERLNRDIE 56 (158)
Q Consensus 1 mv~aER~RR~kln~~~~~LRslvP~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~ 56 (158)
||..+|+-|..+..+-..|+. =++|+-.-|..||.++.+|+.-+.
T Consensus 102 MVa~ar~~~~~~e~r~~~L~~-----------ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 102 MVADARKEKYAIEILNKRLTE-----------QLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888874 578888888889999998887544
No 59
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=45.33 E-value=49 Score=24.02 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 031518 34 IVDASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
+.+-.+-.+++|++.++++++++..
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~ 67 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEK 67 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457777888888899888888754
No 60
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=44.96 E-value=18 Score=20.66 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031518 34 IVDASNYIEELKQKVERLNR 53 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~ 53 (158)
+-+--+||++|+++-.+|+.
T Consensus 5 vkelknyiqeleernaelkn 24 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKN 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHh
Confidence 34556899999988777765
No 61
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.47 E-value=32 Score=19.36 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=23.8
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHhh
Q 031518 28 LSKTSIIVDASNYIEELKQKVERLNRDI 55 (158)
Q Consensus 28 ~DKaSil~dAI~YIk~Lq~~v~~Le~e~ 55 (158)
|.-+.-|+++-.-|..|+.+++.|+.+.
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999998864
No 62
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=40.33 E-value=22 Score=23.01 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 031518 38 SNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 38 I~YIk~Lq~~v~~Le~e~~~~ 58 (158)
-.|+..|+.++..||..+...
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999987654
No 63
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=39.99 E-value=1.8e+02 Score=24.91 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=36.8
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEee--CCeEEEEEee
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCT--DTFSLQAIGG 126 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~v 126 (158)
+.++-+.-+.+ ||.+.+|...|-+.|+++-+.+++.. ++.-+-.+.+
T Consensus 454 ~~~l~v~~~D~-PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v 502 (529)
T 1ygy_A 454 GINLIIHYVDR-PGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL 502 (529)
T ss_dssp SEEEEEEESCC-TTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred ccEEEEEcCCC-CchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE
Confidence 45666778888 99999999999999999999999875 3444444433
No 64
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=39.87 E-value=1e+02 Score=22.21 Aligned_cols=66 Identities=12% Similarity=0.202 Sum_probs=42.6
Q ss_pred EEEECCeEEEEEEec---CCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHh
Q 031518 73 VKTLEKGFMINVFSK---KSCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIR 149 (158)
Q Consensus 73 V~~~~~~~~i~i~c~---~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~ 149 (158)
+...++-..|.|... .. ||.+.+++++|.+-|++|.-.. +.. ..+ ++++.. -+.+...++|++++.
T Consensus 89 v~~~~~~a~VsvVG~gm~~~-~Gv~arif~aLa~~~InI~~is--tSe-~~I-s~vV~~------~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSH-PGVTAEFMEALRDVNVNIELIS--TSE-IRI-SVLIRE------DDLDAAARALHEQFQ 157 (178)
T ss_dssp EEEESCEEEEEEEEECCTTC-HHHHHHHHHHHHHTTCCCCEEE--EET-TEE-EEEEEG------GGHHHHHHHHHHHHT
T ss_pred EEEeCCeEEEEEEcCCcccC-ccHHHHHHHHHHHCCCCEEEEE--cCC-CeE-EEEEeH------HHHHHHHHHHHHHHc
Confidence 444555578888765 44 8999999999999999997743 333 222 222322 234556667777664
No 65
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=37.77 E-value=68 Score=22.86 Aligned_cols=66 Identities=8% Similarity=0.044 Sum_probs=40.5
Q ss_pred EEEECCeEEEEEEecC---CCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEEEEeeeecCCCCccCHHHHHHHHHHHHh
Q 031518 73 VKTLEKGFMINVFSKK---SCPGLLVSILETFEELALNVLEARVSCTDTFSLQAIGGENEEQGETIDAHVVKQALLQVIR 149 (158)
Q Consensus 73 V~~~~~~~~i~i~c~~---~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~~~~v~~~~~~~~~~~~~l~~~l~~ai~ 149 (158)
+...++-..|.|.... . ||.+.+++++|.+-|+++.... +.. ..+- +++.. -+.+...++|++++.
T Consensus 89 v~~~~~~a~vsvVG~gm~~~-~Gv~a~~f~aL~~~~InI~~is--~Se-~~is-~vv~~------~d~~~Av~~Lh~~f~ 157 (167)
T 2dt9_A 89 AILRPDIAKVSIVGVGLAST-PEVPAKMFQAVASTGANIEMIA--TSE-VRIS-VIIPA------EYAEAALRAVHQAFE 157 (167)
T ss_dssp EEEECSEEEEEEEESSGGGS-THHHHHHHHHHHHTTCCCCEEE--ECS-SEEE-EEEEG------GGHHHHHHHHHHHTC
T ss_pred EEEeCCEEEEEEECCCcccC-cCHHHHHHHHHHHCCCCEEEEE--ccC-CEEE-EEEeH------HHHHHHHHHHHHHHc
Confidence 3334455777777654 6 9999999999999999995443 332 2222 22322 234556666666643
No 66
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=35.97 E-value=58 Score=24.62 Aligned_cols=54 Identities=13% Similarity=0.117 Sum_probs=35.1
Q ss_pred EEEECCeEEEEEE-ecCCCCchHHHHHHHHhhCCCeEEEE--EEEee-CCeEEEEEeee
Q 031518 73 VKTLEKGFMINVF-SKKSCPGLLVSILETFEELALNVLEA--RVSCT-DTFSLQAIGGE 127 (158)
Q Consensus 73 V~~~~~~~~i~i~-c~~~~~gll~~il~aLe~l~L~V~~a--~is~~-~~~~l~~~~v~ 127 (158)
|....+.+.|.|. .+.. ||.+.+|+.+|.+.|++|--. +++.. +++.-.+|.+.
T Consensus 29 Ia~~~~~a~Iti~g~~~~-pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 29 VAHDRSEAKVTIVGLPDI-PGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp EEEECSEEEEEEEEEECS-TTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred EEccCCEEEEEEecCCCC-ccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence 4444556777775 5777 999999999999998766443 33333 33444455544
No 67
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=35.06 E-value=29 Score=19.12 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhHHHhh
Q 031518 3 SREHKKAAALHEKLQLLR 20 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LR 20 (158)
|.+|+|++.|..++..||
T Consensus 17 E~l~~r~eqL~~kLe~L~ 34 (34)
T 1a93_A 17 DLLRKRREQLKHKLEQLX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 457888888888888775
No 68
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=35.03 E-value=60 Score=22.30 Aligned_cols=23 Identities=9% Similarity=0.310 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 031518 36 DASNYIEELKQKVERLNRDIENG 58 (158)
Q Consensus 36 dAI~YIk~Lq~~v~~Le~e~~~~ 58 (158)
+-.+-.+++|++.++++++++..
T Consensus 12 ~mmkqaq~mQ~~m~~~QeeL~~~ 34 (112)
T 1j8b_A 12 GLMKQAQQMQEKMQKMQEEIAQL 34 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677788999999999988754
No 69
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=34.72 E-value=17 Score=22.75 Aligned_cols=24 Identities=21% Similarity=0.464 Sum_probs=19.2
Q ss_pred cchHHH-HHHHHHHHHHHHHHHHHh
Q 031518 31 TSIIVD-ASNYIEELKQKVERLNRD 54 (158)
Q Consensus 31 aSil~d-AI~YIk~Lq~~v~~Le~e 54 (158)
.|.|.| ++.|-++||+.+.+|--+
T Consensus 24 nSSLEdPst~YYqeLqr~is~L~lq 48 (66)
T 2acm_A 24 NSSLEDPSTDYYQELQRDISEMFLQ 48 (66)
T ss_dssp CGGGGCTTSHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchHHHHHHHHHHHHHHHH
Confidence 355555 899999999999998654
No 70
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=34.18 E-value=28 Score=22.06 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q 031518 38 SNYIEELKQKVERLNRDIENGQ 59 (158)
Q Consensus 38 I~YIk~Lq~~v~~Le~e~~~~~ 59 (158)
-.|+..|+.++..||..+..+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4699999999999998776543
No 71
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.92 E-value=98 Score=20.17 Aligned_cols=43 Identities=28% Similarity=0.291 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHhhh
Q 031518 3 SREHKKAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERLNRDIE 56 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRslvP~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~~ 56 (158)
+.|..+|...-.-|..||. .+.+|.----+|+.+++.|..++.
T Consensus 38 E~E~~~R~~~E~d~~~Lrk-----------dvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 38 QEEMLQREEAENTLQSFRQ-----------DVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----------THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999996 466777777899999999998864
No 72
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.20 E-value=76 Score=21.13 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=27.3
Q ss_pred CeEEEEEEec-----CCCCchHHHHHHHHhhCCCeEEEEEEEe
Q 031518 78 KGFMINVFSK-----KSCPGLLVSILETFEELALNVLEARVSC 115 (158)
Q Consensus 78 ~~~~i~i~c~-----~~~~gll~~il~aLe~l~L~V~~a~is~ 115 (158)
..++|.+... +--+.++..+++.|..+| +|+.+++..
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~ 49 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVE 49 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECS
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEec
Confidence 4578877431 110468899999999999 899988854
No 73
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.95 E-value=28 Score=21.55 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 031518 37 ASNYIEELKQKVERLNRDIE 56 (158)
Q Consensus 37 AI~YIk~Lq~~v~~Le~e~~ 56 (158)
--.|+.+|+.+++.|+.+..
T Consensus 28 K~~~~~~Le~~v~~L~~eN~ 47 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNY 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888887643
No 74
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=31.36 E-value=77 Score=27.07 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=44.3
Q ss_pred EEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCC-eEEEEEeeeecCCCCccCHHHHHHHHHHH
Q 031518 80 FMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDT-FSLQAIGGENEEQGETIDAHVVKQALLQV 147 (158)
Q Consensus 80 ~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~v~~~~~~~~~~~~~l~~~l~~a 147 (158)
..|-+..+.+ ||.|.++|..|...|+++.+-.+-...+ ..-+.|.+..+ ..+...+.++|...
T Consensus 35 TSLiFsl~n~-pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e----h~~d~~v~~AL~eL 98 (429)
T 1phz_A 35 ISLIFSLKEE-VGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD----KRTKPVLGSIIKSL 98 (429)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC----GGGHHHHHHHHHHH
T ss_pred EEEEEEeCCC-ccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe----eCCCHHHHHHHHHH
Confidence 4455566788 9999999999999999999988888754 34455666542 33444566665443
No 75
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=31.28 E-value=42 Score=17.90 Aligned_cols=16 Identities=19% Similarity=0.684 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 031518 40 YIEELKQKVERLNRDI 55 (158)
Q Consensus 40 YIk~Lq~~v~~Le~e~ 55 (158)
.+++||+++..|+.-.
T Consensus 14 ivq~lq~r~drle~tv 29 (32)
T 2akf_A 14 IVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677888888777543
No 76
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=30.19 E-value=31 Score=22.81 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 031518 34 IVDASNYIEELKQKVE 49 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~ 49 (158)
+.+|++||+.++.+-+
T Consensus 10 ~~~A~~YvnkVK~rF~ 25 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQ 25 (89)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 6799999999998853
No 77
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=29.91 E-value=2.3e+02 Score=23.30 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=31.0
Q ss_pred EEECCeEEEEEE-ecCCCCchHHHHHHHHhhCCCeEEEEEE
Q 031518 74 KTLEKGFMINVF-SKKSCPGLLVSILETFEELALNVLEARV 113 (158)
Q Consensus 74 ~~~~~~~~i~i~-c~~~~~gll~~il~aLe~l~L~V~~a~i 113 (158)
....+-..|+|. .+.. ||.+.+|++.|.+.+++|.....
T Consensus 259 ~~~~~~~~i~v~~~~~~-~g~~~~If~~La~~~I~vd~I~q 298 (421)
T 3ab4_A 259 ATDKSEAKVTVLGISDK-PGEAAKVFRALADAEINIDMVLQ 298 (421)
T ss_dssp EEECSEEEEEEEEEESS-TTHHHHHHHHHHHTTCCCEEEEE
T ss_pred EeeCCEEEEEEeccCCc-ccHHHHHHHHHHHcCCcEEEEEc
Confidence 334455888888 5778 99999999999999998876543
No 78
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.32 E-value=35 Score=20.77 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 031518 37 ASNYIEELKQKVERLNRDI 55 (158)
Q Consensus 37 AI~YIk~Lq~~v~~Le~e~ 55 (158)
--.|+.+|+.+++.|+.+.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n 38 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQN 38 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467777777777776653
No 79
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=29.29 E-value=22 Score=18.00 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=5.3
Q ss_pred HHHHHHHH
Q 031518 4 REHKKAAA 11 (158)
Q Consensus 4 aER~RR~k 11 (158)
+||+||..
T Consensus 12 aerrrrra 19 (26)
T 1g70_B 12 AERRRRRA 19 (26)
T ss_pred HHHHHHHH
Confidence 68876654
No 80
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=29.25 E-value=63 Score=27.48 Aligned_cols=32 Identities=13% Similarity=0.356 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCCchHHHHHHHHhhCCCeEEEE
Q 031518 79 GFMINVFSKKSCPGLLVSILETFEELALNVLEA 111 (158)
Q Consensus 79 ~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a 111 (158)
.+++++.+.++ ||.|.+|-..|-+.++.+-+.
T Consensus 359 ~yy~r~~~~d~-~gvl~~i~~~~~~~~isi~~~ 390 (444)
T 3mtj_A 359 AYYLRLRAFDR-PGVLADITRILADSSISIDAM 390 (444)
T ss_dssp EEEEEEEEC-C-CHHHHHHHHHHHHTTCCEEEE
T ss_pred eeEEEEEecCc-ccHHHHHHHHHHhcCCceeEE
Confidence 49999999999 999999999999999987664
No 81
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=29.07 E-value=19 Score=27.74 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=30.2
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 031518 8 KAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERLNR 53 (158)
Q Consensus 8 RR~kln~~~~~LRslvP~~K~DKaSil~dAI~YIk~Lq~~v~~Le~ 53 (158)
=|.-++.-...||-|....=..-..++.|||+|++.|-+=...|+.
T Consensus 52 v~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIKDDISNTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666777765411112257899999999999876666553
No 82
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=28.87 E-value=34 Score=22.38 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 031518 33 IIVDASNYIEELKQKVER 50 (158)
Q Consensus 33 il~dAI~YIk~Lq~~v~~ 50 (158)
-+.||++||+.++.+-+.
T Consensus 6 ~~~~A~~yv~kVK~rF~~ 23 (85)
T 1e91_A 6 EFNNAISYVNKIKTRFLD 23 (85)
T ss_dssp HHHHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHHHHHHHHhc
Confidence 367999999999988543
No 83
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=28.48 E-value=95 Score=20.86 Aligned_cols=17 Identities=12% Similarity=0.349 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhcC
Q 031518 42 EELKQKVERLNRDIENG 58 (158)
Q Consensus 42 k~Lq~~v~~Le~e~~~~ 58 (158)
+++|++.++++++++..
T Consensus 13 q~mQ~~m~~~QeeL~~~ 29 (99)
T 3f42_A 13 DGMKKEFSQLEEKNKDT 29 (99)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88999999999998754
No 84
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=28.47 E-value=15 Score=21.99 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q 031518 38 SNYIEELKQKVERLN 52 (158)
Q Consensus 38 I~YIk~Lq~~v~~Le 52 (158)
-.|+..|+.+++.||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 579999999998875
No 85
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.92 E-value=60 Score=22.76 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhh
Q 031518 32 SIIVDASNYIEELKQKVERLNRDIE 56 (158)
Q Consensus 32 Sil~dAI~YIk~Lq~~v~~Le~e~~ 56 (158)
+|..++=.||-+|+.+|..|+.+++
T Consensus 33 ~l~~E~q~~v~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 33 NMKTESQRVVLQLKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999998764
No 86
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=26.13 E-value=1.5e+02 Score=24.90 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=38.5
Q ss_pred CCceEEEEEECCeEEEEEEecCCCCchHHHHHHHHhhCCCeEEEEEEEeeCCeEEE
Q 031518 67 LPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETFEELALNVLEARVSCTDTFSLQ 122 (158)
Q Consensus 67 ~p~~V~V~~~~~~~~i~i~c~~~~~gll~~il~aLe~l~L~V~~a~is~~~~~~l~ 122 (158)
+|. |......+...|-+.-... ||.|.+|-..|-+.|++|.+-...+-++.-..
T Consensus 332 ~p~-~~~~~~~~~~r~~~~h~n~-p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~ 385 (416)
T 3k5p_A 332 FPQ-VQLPPRPTGTRFMHVHENR-PGILNSLMNVFSHHHINIASQFLQTDGEVGYL 385 (416)
T ss_dssp SCC-CCCCCCSSSEEEEEEECCC-TTHHHHHHHHHHHTTCCEEEEEEEECSSCEEE
T ss_pred CCC-cCCCCCCCceEEEEEecCC-ccHHHHHHHHHHHcCCCHHHHhccCCCceEEE
Confidence 443 4433333446777777778 99999999999999999998666665554433
No 87
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.74 E-value=66 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 031518 34 IVDASNYIEELKQKVERLNRDI 55 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~Le~e~ 55 (158)
|..||+-|.-||..+++|+.+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6789998888888888888764
No 88
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=24.38 E-value=47 Score=21.23 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031518 34 IVDASNYIEELKQKVER 50 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~ 50 (158)
+.||+.|++..+.+-+.
T Consensus 4 ~~dA~~yl~~VK~~F~~ 20 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGS 20 (77)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 57999999999988653
No 89
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.23 E-value=50 Score=19.96 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 031518 38 SNYIEELKQKVERLNRDIE 56 (158)
Q Consensus 38 I~YIk~Lq~~v~~Le~e~~ 56 (158)
-.|+.+|+.+++.|+.+..
T Consensus 21 k~~~~~Le~~~~~L~~~n~ 39 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNG 39 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577777777777776543
No 90
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.34 E-value=1.4e+02 Score=19.03 Aligned_cols=25 Identities=8% Similarity=-0.089 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHhHHHhhcC-CCCCCC
Q 031518 3 SREHKKAAALHEKLQLLRSI-TNSHAL 28 (158)
Q Consensus 3 ~aER~RR~kln~~~~~LRsl-vP~~K~ 28 (158)
+|.|+| +...+....|+.. +|++.-
T Consensus 4 ~~~r~r-rl~~~F~~mLk~~~p~I~~~ 29 (77)
T 2cqn_A 4 GSSGMK-RKESAFKSMLKQAAPPIELD 29 (77)
T ss_dssp CCCSHH-HHHHHHHHHHHTCSSCCCTT
T ss_pred HHHHHH-HHHHHHHHHHHhcCCCCCCC
Confidence 345544 4456778899999 566654
No 91
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=22.81 E-value=50 Score=22.59 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031518 34 IVDASNYIEELKQKVER 50 (158)
Q Consensus 34 l~dAI~YIk~Lq~~v~~ 50 (158)
+.||++||+.++.+-+.
T Consensus 7 ~~dA~~YvnkVK~rF~d 23 (105)
T 2f05_A 7 FNNAISYVNKIKTRFLD 23 (105)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 67999999999998543
No 92
>3ge3_E Toluene-4-monooxygenase system protein D; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.137.1.1 PDB: 3dhh_E* 3dhi_E 3ge8_E 3i5j_E 3i63_E 3q14_E 3q2a_E* 3q3m_E* 3q3n_E* 3q3o_E* 1g10_A 1g11_A 2bf2_A 3ri7_E 2bf5_A 2bf3_A* 2bf3_B*
Probab=21.95 E-value=13 Score=25.60 Aligned_cols=54 Identities=7% Similarity=0.023 Sum_probs=37.7
Q ss_pred CCceEEEEEECCeEEEEEEecCCCCchHHHHHHHH-hhCCCeEEEEEEEeeCCeEE
Q 031518 67 LPIQVTVKTLEKGFMINVFSKKSCPGLLVSILETF-EELALNVLEARVSCTDTFSL 121 (158)
Q Consensus 67 ~p~~V~V~~~~~~~~i~i~c~~~~~gll~~il~aL-e~l~L~V~~a~is~~~~~~l 121 (158)
.|. ++|.+.+...+|+|.++.++---...|=++| +.+.+.-++.++|++.|++-
T Consensus 35 NP~-~~v~V~d~pa~vrI~a~g~L~i~r~tieE~LGr~~~~~elev~mss~~Gri~ 89 (103)
T 3ge3_E 35 NPG-KEITVEDRRAYVRIAAEGELILTRKTLEEQLGRPFNMQELEINLASFAGQIQ 89 (103)
T ss_dssp CTT-SCCEEEECSSEEEEEEESEEEEEHHHHHHHHTSCCCGGGGGGTEEEEESEEE
T ss_pred CcC-CEEEEeecCCEEEEecCCeEEEEHHHHHHHhCCCCcHHHhhhhhheeeeEEE
Confidence 453 7777777789999999988533345565665 55566667778888887764
No 93
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=21.67 E-value=1.5e+02 Score=19.91 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=27.0
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHhh
Q 031518 8 KAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKVERLNRDI 55 (158)
Q Consensus 8 RR~kln~~~~~LRslvP~~K~DKaSil~dAI~YIk~Lq~~v~~Le~e~ 55 (158)
.|.+..+.|..|.+.. .-...+|=+||.-|.++|+-|+..+
T Consensus 46 kr~kFee~fe~l~s~l-------~~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 46 RRDKFSEVLDNLKSTF-------NEFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHhhHHHhHHHHHHHHHhHHHH
Confidence 3455555555555421 0124568899999999999998764
No 94
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=20.65 E-value=1e+02 Score=15.87 Aligned_cols=19 Identities=16% Similarity=0.482 Sum_probs=14.8
Q ss_pred CcccchHHHHHHHHHHHHH
Q 031518 28 LSKTSIIVDASNYIEELKQ 46 (158)
Q Consensus 28 ~DKaSil~dAI~YIk~Lq~ 46 (158)
++..-+|-+|-.|+...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4566788999999987665
No 95
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=20.32 E-value=76 Score=19.24 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=27.0
Q ss_pred HHHHHHHhHHHhhcCCC--CCCCcccchHHHHHHHHHHHHHH
Q 031518 8 KAAALHEKLQLLRSITN--SHALSKTSIIVDASNYIEELKQK 47 (158)
Q Consensus 8 RR~kln~~~~~LRslvP--~~K~DKaSil~dAI~YIk~Lq~~ 47 (158)
=|+.|..+|...|-|+- -++..+.-=--+-|.+++.||--
T Consensus 7 wReqL~qKFEeIRwlIeE~Rh~Lk~TensfeQItfmqalQLl 48 (58)
T 1pd3_A 7 WREQLGQKFEEIRWLIEEVRHRLKITENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 48899999999998865 23333332234678888888763
Done!