Query 031521
Match_columns 158
No_of_seqs 189 out of 1898
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 00:45:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.8 1E-20 3.4E-25 144.5 9.9 121 36-158 2-130 (313)
2 3rgz_A Protein brassinosteroid 99.8 1.5E-18 5.3E-23 146.3 8.7 121 34-157 6-155 (768)
3 4eco_A Uncharacterized protein 99.7 4E-18 1.4E-22 141.2 7.6 118 39-158 29-254 (636)
4 4ecn_A Leucine-rich repeat pro 99.7 7.9E-18 2.7E-22 143.8 6.9 117 37-158 266-496 (876)
5 4fcg_A Uncharacterized protein 99.6 4.4E-16 1.5E-20 119.5 2.8 121 35-158 22-155 (328)
6 3g39_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 94.1 8.1 91 68-158 7-107 (170)
7 3e6j_A Variable lymphocyte rec 99.4 6.4E-13 2.2E-17 96.9 8.4 91 67-157 16-116 (229)
8 3rgz_A Protein brassinosteroid 99.3 1.2E-12 3.9E-17 110.5 6.8 78 81-158 632-709 (768)
9 2o6r_A Variable lymphocyte rec 99.3 3.1E-12 1.1E-16 89.4 7.8 89 68-156 5-103 (177)
10 1w8a_A SLIT protein; signaling 99.3 2E-12 6.9E-17 91.9 6.6 77 81-157 54-130 (192)
11 2o6s_A Variable lymphocyte rec 99.3 4.5E-12 1.5E-16 90.7 7.8 90 68-157 5-104 (208)
12 2wfh_A SLIT homolog 2 protein 99.3 4.7E-12 1.6E-16 90.2 7.8 74 82-156 32-105 (193)
13 2r9u_A Variable lymphocyte rec 99.3 5.8E-12 2E-16 88.4 8.1 78 81-158 33-110 (174)
14 1w8a_A SLIT protein; signaling 99.3 3.5E-12 1.2E-16 90.6 6.5 91 68-158 6-107 (192)
15 2ifg_A High affinity nerve gro 99.3 6.8E-12 2.3E-16 96.3 8.5 88 69-157 7-107 (347)
16 4g8a_A TOLL-like receptor 4; l 99.3 5E-12 1.7E-16 103.1 7.2 78 81-158 52-129 (635)
17 2v9t_B SLIT homolog 2 protein 99.3 6E-12 2E-16 91.3 6.8 61 82-142 33-93 (220)
18 2v70_A SLIT-2, SLIT homolog 2 99.2 2.9E-11 1E-15 87.6 7.8 77 81-157 81-157 (220)
19 2z81_A CD282 antigen, TOLL-lik 99.2 1.4E-11 4.7E-16 99.6 6.1 76 82-157 27-102 (549)
20 3m19_A Variable lymphocyte rec 99.2 2.2E-11 7.4E-16 89.7 6.0 76 82-157 60-135 (251)
21 2o6q_A Variable lymphocyte rec 99.2 3.4E-11 1.2E-15 89.5 7.0 76 82-157 38-113 (270)
22 2v70_A SLIT-2, SLIT homolog 2 99.2 4E-11 1.4E-15 86.9 7.1 78 81-158 57-134 (220)
23 2wfh_A SLIT homolog 2 protein 99.2 5.4E-11 1.8E-15 84.6 7.5 79 80-158 53-131 (193)
24 4fcg_A Uncharacterized protein 99.2 4.6E-11 1.6E-15 91.5 6.8 77 81-157 229-305 (328)
25 2v9t_B SLIT homolog 2 protein 99.2 7.5E-11 2.6E-15 85.5 7.2 75 82-156 57-131 (220)
26 2z80_A TOLL-like receptor 2, v 99.1 4.9E-11 1.7E-15 91.7 6.2 76 82-157 53-128 (353)
27 1ogq_A PGIP-2, polygalacturona 99.1 2.2E-11 7.7E-16 92.5 3.8 77 81-157 76-153 (313)
28 3vq2_A TLR4, TOLL-like recepto 99.1 8.3E-11 2.8E-15 96.1 7.2 76 82-157 33-108 (606)
29 3v47_A TOLL-like receptor 5B a 99.1 9.1E-11 3.1E-15 92.7 6.8 78 81-158 30-108 (455)
30 3t6q_A CD180 antigen; protein- 99.1 1.1E-10 3.8E-15 95.4 6.6 78 81-158 33-110 (606)
31 2o6r_A Variable lymphocyte rec 99.1 2.4E-10 8.1E-15 79.8 7.3 78 80-157 51-128 (177)
32 3e6j_A Variable lymphocyte rec 99.1 2.6E-10 8.8E-15 83.0 7.5 74 82-156 89-162 (229)
33 4g8a_A TOLL-like receptor 4; l 99.1 2.4E-10 8.1E-15 93.2 7.3 77 81-157 494-571 (635)
34 2xwt_C Thyrotropin receptor; s 99.1 1.5E-10 5E-15 84.5 5.4 78 81-158 31-110 (239)
35 2je0_A Acidic leucine-rich nuc 99.1 1.3E-10 4.3E-15 78.9 4.6 77 80-158 41-118 (149)
36 2xot_A Amphoterin-induced prot 99.1 2.3E-10 7.8E-15 88.6 6.3 74 83-156 41-115 (361)
37 3m19_A Variable lymphocyte rec 99.0 4.5E-10 1.5E-14 82.6 7.5 78 81-158 83-160 (251)
38 2o6s_A Variable lymphocyte rec 99.0 5.2E-10 1.8E-14 79.9 7.6 77 81-157 76-152 (208)
39 3zyi_A Leucine-rich repeat-con 99.0 4.2E-10 1.4E-14 89.3 7.4 78 81-158 75-152 (452)
40 2je0_A Acidic leucine-rich nuc 99.0 1.2E-10 4.1E-15 79.0 3.4 79 80-158 63-145 (149)
41 2z62_A TOLL-like receptor 4, v 99.0 4.8E-10 1.6E-14 83.3 7.0 75 82-156 53-127 (276)
42 3j0a_A TOLL-like receptor 5; m 99.0 1.9E-10 6.4E-15 98.0 5.1 87 70-157 14-101 (844)
43 2ell_A Acidic leucine-rich nuc 99.0 1.8E-10 6E-15 79.7 3.8 75 81-158 49-125 (168)
44 1dce_A Protein (RAB geranylger 99.0 5.9E-10 2E-14 91.4 7.1 75 81-158 463-538 (567)
45 3rfs_A Internalin B, repeat mo 99.0 9.6E-10 3.3E-14 81.8 7.6 75 82-156 134-208 (272)
46 3rfs_A Internalin B, repeat mo 99.0 1.1E-09 3.6E-14 81.6 7.6 75 82-156 110-184 (272)
47 2xot_A Amphoterin-induced prot 99.0 5.9E-10 2E-14 86.2 6.2 77 81-157 64-140 (361)
48 2z66_A Variable lymphocyte rec 99.0 2.7E-10 9.1E-15 85.8 4.1 89 68-157 5-105 (306)
49 2id5_A Lingo-1, leucine rich r 99.0 8.4E-10 2.9E-14 87.9 7.2 75 82-156 33-107 (477)
50 3g39_A Variable lymphocyte rec 99.0 1.5E-09 5.2E-14 75.5 7.0 73 83-158 11-83 (170)
51 4b8c_D Glucose-repressible alc 99.0 4.2E-10 1.4E-14 94.7 4.7 75 81-158 247-321 (727)
52 2ell_A Acidic leucine-rich nuc 99.0 8E-10 2.7E-14 76.3 5.4 79 80-158 70-152 (168)
53 3v47_A TOLL-like receptor 5B a 99.0 8.9E-10 3E-14 87.0 6.2 75 82-156 324-398 (455)
54 2r9u_A Variable lymphocyte rec 99.0 1.3E-09 4.4E-14 76.3 6.4 72 84-158 15-86 (174)
55 2ft3_A Biglycan; proteoglycan, 98.9 1.1E-09 3.9E-14 83.4 6.5 80 68-148 31-120 (332)
56 1xku_A Decorin; proteoglycan, 98.9 1.8E-09 6.2E-14 82.1 7.4 81 68-149 29-119 (330)
57 3zyj_A Leucine-rich repeat-con 98.9 1.6E-09 5.4E-14 85.7 7.3 76 82-157 65-140 (440)
58 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1.3E-09 4.5E-14 88.6 6.9 74 81-157 76-150 (562)
59 1ozn_A Reticulon 4 receptor; N 98.9 1.8E-09 6.1E-14 80.6 7.0 77 81-157 56-133 (285)
60 3vq2_A TLR4, TOLL-like recepto 98.9 1.6E-09 5.4E-14 88.6 7.1 77 81-157 80-157 (606)
61 4ezg_A Putative uncharacterize 98.9 7.7E-10 2.6E-14 78.5 4.6 74 82-156 89-162 (197)
62 3oja_B Anopheles plasmodium-re 98.9 1.6E-09 5.6E-14 88.9 7.1 76 82-157 76-151 (597)
63 1p9a_G Platelet glycoprotein I 98.9 2.2E-09 7.4E-14 80.8 7.1 76 82-157 101-176 (290)
64 1p9a_G Platelet glycoprotein I 98.9 2.4E-09 8.3E-14 80.5 7.3 74 82-156 125-198 (290)
65 3o6n_A APL1; leucine-rich repe 98.9 1.4E-09 4.7E-14 84.6 6.1 61 82-142 70-130 (390)
66 1ziw_A TOLL-like receptor 3; i 98.9 1.5E-09 5.2E-14 89.8 6.6 76 82-157 50-125 (680)
67 1ozn_A Reticulon 4 receptor; N 98.9 2.6E-09 8.9E-14 79.7 7.2 77 81-157 80-157 (285)
68 2ifg_A High affinity nerve gro 98.9 2E-09 7E-14 82.4 6.6 72 85-158 12-85 (347)
69 4eco_A Uncharacterized protein 98.9 3.1E-10 1.1E-14 94.0 2.1 73 80-152 205-298 (636)
70 2z66_A Variable lymphocyte rec 98.9 2.9E-09 9.9E-14 80.1 7.3 77 81-157 175-252 (306)
71 1wwl_A Monocyte differentiatio 98.9 4.9E-10 1.7E-14 85.0 2.9 63 81-144 121-188 (312)
72 2o6q_A Variable lymphocyte rec 98.9 3.7E-09 1.3E-13 78.5 7.6 17 126-142 178-194 (270)
73 1xku_A Decorin; proteoglycan, 98.9 2.9E-09 9.9E-14 81.0 7.2 76 81-157 192-267 (330)
74 2z62_A TOLL-like receptor 4, v 98.9 3.3E-09 1.1E-13 78.8 7.3 78 81-158 76-154 (276)
75 1a9n_A U2A', U2A'; complex (nu 98.9 8.7E-10 3E-14 76.9 3.9 74 82-157 65-144 (176)
76 2z81_A CD282 antigen, TOLL-lik 98.9 1.7E-09 5.7E-14 87.4 6.0 77 81-157 50-127 (549)
77 2z7x_B TOLL-like receptor 1, v 98.9 2E-09 6.7E-14 86.6 6.1 76 80-158 44-120 (520)
78 3zyi_A Leucine-rich repeat-con 98.9 2.8E-09 9.6E-14 84.6 6.9 76 82-157 219-294 (452)
79 2id5_A Lingo-1, leucine rich r 98.9 3E-09 1E-13 84.7 6.8 77 81-157 56-132 (477)
80 3zyj_A Leucine-rich repeat-con 98.9 2.9E-09 9.9E-14 84.2 6.6 76 82-157 208-283 (440)
81 2z63_A TOLL-like receptor 4, v 98.9 3.4E-09 1.1E-13 85.8 7.1 76 82-157 53-128 (570)
82 4b8c_D Glucose-repressible alc 98.9 1.6E-09 5.3E-14 91.2 5.2 75 81-158 224-298 (727)
83 3oja_B Anopheles plasmodium-re 98.9 4.1E-09 1.4E-13 86.5 7.6 78 81-158 99-176 (597)
84 2z7x_B TOLL-like receptor 1, v 98.9 3E-09 1E-13 85.5 6.3 74 81-157 21-94 (520)
85 4ezg_A Putative uncharacterize 98.9 2.1E-09 7.3E-14 76.2 4.8 76 81-158 66-141 (197)
86 2ft3_A Biglycan; proteoglycan, 98.9 2.2E-09 7.4E-14 81.9 5.0 75 82-157 194-268 (332)
87 3o6n_A APL1; leucine-rich repe 98.9 6.1E-09 2.1E-13 80.9 7.6 78 80-158 92-170 (390)
88 4ay9_X Follicle-stimulating ho 98.8 3.1E-09 1E-13 81.8 5.3 91 68-158 7-109 (350)
89 3t6q_A CD180 antigen; protein- 98.8 3.4E-09 1.2E-13 86.6 5.8 77 81-157 57-133 (606)
90 1a9n_A U2A', U2A'; complex (nu 98.8 2.1E-09 7.4E-14 74.9 3.9 75 81-158 42-118 (176)
91 2z80_A TOLL-like receptor 2, v 98.8 4.6E-09 1.6E-13 80.7 6.0 78 80-158 75-154 (353)
92 1dce_A Protein (RAB geranylger 98.8 3.7E-09 1.3E-13 86.7 5.8 72 82-158 442-513 (567)
93 1ziw_A TOLL-like receptor 3; i 98.8 1E-08 3.4E-13 85.0 7.5 78 81-158 73-150 (680)
94 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 7E-09 2.4E-13 84.3 6.4 76 80-158 51-126 (562)
95 4ecn_A Leucine-rich repeat pro 98.8 1.1E-09 3.6E-14 93.9 1.2 74 80-153 447-541 (876)
96 2z63_A TOLL-like receptor 4, v 98.8 1.2E-08 4E-13 82.6 7.3 79 80-158 75-154 (570)
97 3oja_A Leucine-rich immune mol 98.8 7.1E-09 2.4E-13 83.4 5.7 73 82-157 145-218 (487)
98 3j0a_A TOLL-like receptor 5; m 98.8 8.9E-09 3E-13 87.7 6.6 78 81-158 73-153 (844)
99 1wwl_A Monocyte differentiatio 98.8 2.5E-09 8.5E-14 81.0 2.3 74 82-156 96-176 (312)
100 4glp_A Monocyte differentiatio 98.7 7.4E-09 2.5E-13 78.3 4.4 74 83-156 93-172 (310)
101 2xwt_C Thyrotropin receptor; s 98.7 1.3E-08 4.6E-13 74.0 3.7 74 81-156 55-130 (239)
102 3rw6_A Nuclear RNA export fact 98.6 2.9E-08 9.8E-13 74.2 4.3 77 80-158 169-256 (267)
103 4glp_A Monocyte differentiatio 98.6 4.8E-08 1.6E-12 73.8 5.2 71 81-156 224-297 (310)
104 4fmz_A Internalin; leucine ric 98.6 4.8E-08 1.6E-12 74.5 4.9 73 81-157 265-337 (347)
105 3oja_A Leucine-rich immune mol 98.6 6.9E-08 2.4E-12 77.6 6.0 72 72-143 111-183 (487)
106 1h6t_A Internalin B; cell adhe 98.6 1.2E-07 4.1E-12 71.2 6.8 57 82-142 113-169 (291)
107 3o53_A Protein LRIM1, AGAP0063 98.6 5.2E-08 1.8E-12 73.9 4.5 51 104-156 190-240 (317)
108 3o53_A Protein LRIM1, AGAP0063 98.5 1.1E-07 3.8E-12 72.0 5.6 73 82-157 145-218 (317)
109 1xeu_A Internalin C; cellular 98.5 2E-07 6.8E-12 69.1 6.8 70 82-157 107-176 (263)
110 1h6t_A Internalin B; cell adhe 98.5 1.9E-07 6.5E-12 70.1 6.5 71 81-157 90-160 (291)
111 1h6u_A Internalin H; cell adhe 98.5 2.9E-07 9.9E-12 69.6 7.5 69 82-156 86-154 (308)
112 2ast_B S-phase kinase-associat 98.5 1.1E-08 3.7E-13 77.7 -0.7 77 81-157 93-172 (336)
113 2ast_B S-phase kinase-associat 98.5 1.6E-08 5.4E-13 76.8 -0.1 77 81-157 118-199 (336)
114 1o6v_A Internalin A; bacterial 98.5 3.2E-07 1.1E-11 72.9 7.2 71 81-157 68-138 (466)
115 1h6u_A Internalin H; cell adhe 98.5 3.5E-07 1.2E-11 69.2 6.8 71 81-157 107-177 (308)
116 3cvr_A Invasion plasmid antige 98.5 6.6E-08 2.3E-12 79.4 2.9 68 71-147 49-117 (571)
117 4fmz_A Internalin; leucine ric 98.4 2.7E-07 9.1E-12 70.3 5.9 72 82-157 244-315 (347)
118 1m9s_A Internalin B; cell inva 98.4 3.9E-07 1.3E-11 75.3 7.0 57 82-142 110-166 (605)
119 1ds9_A Outer arm dynein; leuci 98.4 3.7E-09 1.3E-13 75.0 -4.4 73 80-157 47-119 (198)
120 1xeu_A Internalin C; cellular 98.4 4.2E-07 1.4E-11 67.3 6.1 72 80-158 62-133 (263)
121 1m9s_A Internalin B; cell inva 98.4 4.3E-07 1.5E-11 75.0 6.7 69 82-156 132-200 (605)
122 1o6v_A Internalin A; bacterial 98.4 4.3E-07 1.5E-11 72.2 6.6 69 82-156 310-378 (466)
123 3bz5_A Internalin-J, INLJ; leu 98.4 7.8E-07 2.7E-11 70.9 6.8 68 81-157 64-131 (457)
124 3bz5_A Internalin-J, INLJ; leu 98.3 2.2E-06 7.5E-11 68.3 8.8 60 81-146 191-250 (457)
125 3cvr_A Invasion plasmid antige 98.3 7.9E-07 2.7E-11 73.0 6.4 67 82-157 161-234 (571)
126 1ds9_A Outer arm dynein; leuci 98.3 4.1E-09 1.4E-13 74.8 -6.5 74 81-158 70-145 (198)
127 2ca6_A RAN GTPase-activating p 98.3 7.2E-08 2.5E-12 74.8 -0.1 77 81-157 216-307 (386)
128 1jl5_A Outer protein YOPM; leu 98.3 1.1E-06 3.7E-11 70.1 6.6 69 81-157 131-199 (454)
129 3goz_A Leucine-rich repeat-con 98.3 1.4E-07 4.8E-12 72.7 1.2 68 82-149 52-129 (362)
130 2ca6_A RAN GTPase-activating p 98.3 2.3E-07 7.8E-12 72.0 1.7 62 81-142 60-135 (386)
131 3g06_A SSPH2 (leucine-rich rep 98.2 2E-06 6.9E-11 71.2 7.1 67 82-157 222-288 (622)
132 3g06_A SSPH2 (leucine-rich rep 98.2 5.9E-07 2E-11 74.4 3.5 68 80-152 240-307 (622)
133 1jl5_A Outer protein YOPM; leu 98.2 6.5E-07 2.2E-11 71.3 3.5 63 82-152 318-382 (454)
134 4ay9_X Follicle-stimulating ho 98.1 1.4E-06 4.6E-11 66.9 3.8 72 82-156 155-229 (350)
135 3goz_A Leucine-rich repeat-con 98.1 1.2E-06 4E-11 67.6 2.8 77 81-157 22-113 (362)
136 1z7x_W Ribonuclease inhibitor; 98.0 6.2E-07 2.1E-11 70.7 -1.0 37 106-142 371-411 (461)
137 1z7x_W Ribonuclease inhibitor; 97.8 2.1E-06 7E-11 67.7 -0.6 78 81-158 313-403 (461)
138 3rw6_A Nuclear RNA export fact 97.8 3.6E-06 1.2E-10 62.8 0.6 53 102-156 167-223 (267)
139 3sb4_A Hypothetical leucine ri 97.5 8.4E-05 2.9E-09 56.3 4.8 74 82-157 251-325 (329)
140 3sb4_A Hypothetical leucine ri 97.5 8.9E-05 3E-09 56.2 4.9 75 81-157 226-301 (329)
141 3ogk_B Coronatine-insensitive 97.5 8.8E-06 3E-10 66.0 -0.9 74 82-156 165-246 (592)
142 3un9_A NLR family member X1; l 97.5 9.8E-06 3.3E-10 63.0 -0.7 14 128-141 210-223 (372)
143 3rfe_A Platelet glycoprotein I 97.5 0.00025 8.5E-09 47.0 5.8 56 85-142 12-68 (130)
144 3un9_A NLR family member X1; l 97.5 3E-05 1E-09 60.3 1.4 76 82-157 127-215 (372)
145 3e4g_A ATP synthase subunit S, 97.4 3.5E-05 1.2E-09 53.9 1.0 77 81-157 61-143 (176)
146 2p1m_B Transport inhibitor res 97.2 5.6E-05 1.9E-09 61.2 0.2 66 81-146 105-173 (594)
147 3ogk_B Coronatine-insensitive 97.2 0.00013 4.4E-09 59.1 2.3 64 81-144 463-528 (592)
148 1io0_A Tropomodulin; LRR prote 97.2 8.1E-05 2.8E-09 52.1 0.9 64 80-143 64-137 (185)
149 2p1m_B Transport inhibitor res 97.1 3.8E-05 1.3E-09 62.2 -1.6 61 82-143 433-495 (594)
150 1io0_A Tropomodulin; LRR prote 97.1 8.4E-05 2.9E-09 52.0 0.0 60 82-141 94-163 (185)
151 2ra8_A Uncharacterized protein 96.1 0.00066 2.3E-08 52.6 -1.0 41 103-143 250-293 (362)
152 3rfe_A Platelet glycoprotein I 95.5 0.012 4.1E-07 38.7 3.5 39 81-119 31-69 (130)
153 4fdw_A Leucine rich hypothetic 94.7 0.035 1.2E-06 43.3 4.6 40 98-137 264-308 (401)
154 4fdw_A Leucine rich hypothetic 94.4 0.072 2.5E-06 41.5 5.8 71 83-156 159-229 (401)
155 2ra8_A Uncharacterized protein 93.8 0.052 1.8E-06 41.8 3.9 54 81-137 172-227 (362)
156 3e4g_A ATP synthase subunit S, 93.6 0.013 4.4E-07 40.8 0.1 60 81-140 85-150 (176)
157 1pgv_A TMD-1, tropomodulin TMD 93.0 0.076 2.6E-06 37.6 3.3 59 81-139 70-136 (197)
158 4h09_A Hypothetical leucine ri 92.3 0.35 1.2E-05 36.8 6.5 56 99-156 280-336 (379)
159 4fs7_A Uncharacterized protein 91.8 0.25 8.5E-06 38.0 5.1 56 99-156 314-369 (394)
160 4fs7_A Uncharacterized protein 91.2 0.15 5E-06 39.3 3.2 72 82-157 321-392 (394)
161 1pgv_A TMD-1, tropomodulin TMD 89.8 0.2 6.9E-06 35.3 2.7 64 80-143 40-112 (197)
162 4gt6_A Cell surface protein; l 89.8 0.75 2.6E-05 35.2 6.2 54 100-156 306-360 (394)
163 4gt6_A Cell surface protein; l 88.3 0.73 2.5E-05 35.3 5.2 59 82-142 312-370 (394)
164 4h09_A Hypothetical leucine ri 87.4 0.87 3E-05 34.5 5.1 57 82-139 287-343 (379)
165 2lz0_A Uncharacterized protein 59.7 18 0.00062 22.1 4.6 40 98-138 13-52 (100)
166 3ox7_P MH027; urokinase-type p 20.3 38 0.0013 14.4 0.8 9 68-76 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1e-20 Score=144.46 Aligned_cols=121 Identities=35% Similarity=0.632 Sum_probs=106.0
Q ss_pred cCCchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCCCCc--cchhhhcCCCCCC
Q 031521 36 ASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCT--WFHITCNQD---NRVTRLDLGNSNLSG--RLVPELGKLEHLQ 108 (158)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~--~~gv~c~~~---~~l~~L~l~~n~l~~--~~p~~~~~l~~L~ 108 (158)
.|.++|.++|++||..+.+|. .+.+|... .++|. |.||.|+.. ++++.|++++|++.+ .+|+.+.++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 467889999999999998776 78899765 57888 999999864 789999999999998 8899999999999
Q ss_pred EEeccC-CccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 109 YLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 109 ~L~l~~-n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
+|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 999995 88988899889999999999999988888888888888887754
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=1.5e-18 Score=146.28 Aligned_cols=121 Identities=28% Similarity=0.413 Sum_probs=94.5
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCCcc---chh-----------
Q 031521 34 AVASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGR---LVP----------- 99 (158)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~~~gv~c~~~~~l~~L~l~~n~l~~~---~p~----------- 99 (158)
+.+..++|+++|++||+.+.+|. .+.+|... .+||.|.||.|+ .++|+.|+++++++.|. +|+
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~-~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSSN-KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT-SCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCCCC-CCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 34446789999999999998887 89999844 689999999999 78999999999999987 554
Q ss_pred ------------hhcCCCCCCEEeccCCccCCCCCc--cccCCCCCCEEecccCcccccCCccc-cCCCCCCC
Q 031521 100 ------------ELGKLEHLQYLELYKNNIQGTIPV--ELGNLKSLISLDLYNNNISGKIPPSL-AKLKSLVF 157 (158)
Q Consensus 100 ------------~~~~l~~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~Ls~N~l~g~~P~~l-~~l~~L~~ 157 (158)
.+..+++|++|++++|.+.|.+|. .++.+++|++|++++|.+.+.+|..+ .++++|++
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 455667777777777777777776 77777777777777777777766654 66666664
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=4e-18 Score=141.21 Aligned_cols=118 Identities=23% Similarity=0.267 Sum_probs=103.6
Q ss_pred chHHHHHHHHHHhCCCCCCC--------CCCCCCCCCCCCcc---cceeeCCCCCEEEEEcCCCCCCccchhhhcCCCCC
Q 031521 39 NSEGDALYALRRSLSDPDNV--------LQSWDPTLVNPCTW---FHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHL 107 (158)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~--------l~~w~~~~~~~c~~---~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L 107 (158)
..|++||.+++..+.++.+. ..+|+.. .++|.| .||.|+..++|+.|+|+++++.|.+|++++++++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccc
Confidence 46899999999998766433 2369865 789999 99999888999999999999999999999999999
Q ss_pred CEEeccCCc-----------------------------------------------------------------------
Q 031521 108 QYLELYKNN----------------------------------------------------------------------- 116 (158)
Q Consensus 108 ~~L~l~~n~----------------------------------------------------------------------- 116 (158)
+.|++++|.
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~ 187 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence 999999884
Q ss_pred -------cCCCCCccccCCCCCCEEecccCccccc-----------------CCcccc--CCCCCCCC
Q 031521 117 -------IQGTIPVELGNLKSLISLDLYNNNISGK-----------------IPPSLA--KLKSLVFL 158 (158)
Q Consensus 117 -------l~g~~p~~~~~l~~L~~L~Ls~N~l~g~-----------------~P~~l~--~l~~L~~L 158 (158)
++| +|..++++++|++|++++|.++|. +|+.++ ++++|++|
T Consensus 188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 345 888999999999999999999986 999998 99998864
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=7.9e-18 Score=143.78 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=101.4
Q ss_pred CCchHHHHHHHHHHhCCCCCCCCCCCCCCC----CCC--Ccc------------cceeeCCCCCEEEEEcCCCCCCccch
Q 031521 37 SGNSEGDALYALRRSLSDPDNVLQSWDPTL----VNP--CTW------------FHITCNQDNRVTRLDLGNSNLSGRLV 98 (158)
Q Consensus 37 ~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~----~~~--c~~------------~gv~c~~~~~l~~L~l~~n~l~~~~p 98 (158)
....|..+|++||..+.+| +|+.+. .++ |.| .||.|+..++|+.|+|+++++.|.+|
T Consensus 266 ~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip 340 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP 340 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC
T ss_pred cchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc
Confidence 3457999999999999776 676543 344 999 99999988999999999999999999
Q ss_pred hhhcCCCCCCEEec-cCCccCCC---------------------------------------------------------
Q 031521 99 PELGKLEHLQYLEL-YKNNIQGT--------------------------------------------------------- 120 (158)
Q Consensus 99 ~~~~~l~~L~~L~l-~~n~l~g~--------------------------------------------------------- 120 (158)
+.++++++|+.|++ ++|.+.|.
T Consensus 341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 99999999999999 77765444
Q ss_pred -------------------CCccccCCCCCCEEecccCcccc-----------------cCCcccc--CCCCCCCC
Q 031521 121 -------------------IPVELGNLKSLISLDLYNNNISG-----------------KIPPSLA--KLKSLVFL 158 (158)
Q Consensus 121 -------------------~p~~~~~l~~L~~L~Ls~N~l~g-----------------~~P~~l~--~l~~L~~L 158 (158)
+|..++++++|++|+|++|.++| .+|+.++ ++++|++|
T Consensus 421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 88889999999999999999998 3999888 99988764
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.58 E-value=4.4e-16 Score=119.51 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=101.0
Q ss_pred hcCCchHHHHHHHHHHhC-CCCCCCCCCCC---CCCCCCCcccceeeCC---------CCCEEEEEcCCCCCCccchhhh
Q 031521 35 VASGNSEGDALYALRRSL-SDPDNVLQSWD---PTLVNPCTWFHITCNQ---------DNRVTRLDLGNSNLSGRLVPEL 101 (158)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~-~~~~~~l~~w~---~~~~~~c~~~gv~c~~---------~~~l~~L~l~~n~l~~~~p~~~ 101 (158)
.....+|..+|.+||..+ .++.+....|+ ....+.|.|.|+.|.. ..+++.|++++|++. .+|+.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 345568999999999987 46666677884 3446899999999952 368999999999998 788888
Q ss_pred cCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 102 GKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 102 ~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
..+++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..++++++|++|
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 88999999999999999 88988999999999999999998 889888888888764
No 6
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=3.7e-13 Score=94.07 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=77.4
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecc
Q 031521 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (158)
Q Consensus 68 ~~c~~~gv~c~~----------~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls 137 (158)
+.|.|..+.|.. ..+++.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|++|+|+
T Consensus 7 C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 7 CSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456777788754 2468899999999998888899999999999999999997666678999999999999
Q ss_pred cCcccccCCccccCCCCCCCC
Q 031521 138 NNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 138 ~N~l~g~~P~~l~~l~~L~~L 158 (158)
+|.+++..|..+.++++|++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCccCEeCHHHhcCCCCCCEE
Confidence 999996656678889888754
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=6.4e-13 Score=96.93 Aligned_cols=91 Identities=19% Similarity=0.175 Sum_probs=69.1
Q ss_pred CCCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEec
Q 031521 67 VNPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136 (158)
Q Consensus 67 ~~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~L 136 (158)
.+.|+|.+|.|... .+++.|++++|.+.+..|..|..+++|+.|++++|++.+..+..|..+++|++|++
T Consensus 16 ~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 57899999999742 36788888888888777777888888888888888887544455677888888888
Q ss_pred ccCcccccCCccccCCCCCCC
Q 031521 137 YNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 137 s~N~l~g~~P~~l~~l~~L~~ 157 (158)
++|.+++..+..+..+++|++
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcCCccChhHhCcchhhCe
Confidence 888887554455666666654
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.34 E-value=1.2e-12 Score=110.53 Aligned_cols=78 Identities=36% Similarity=0.583 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
..++.|++++|.+.|.+|.+++.++.|+.|++++|+++|.+|..++.+++|+.|||++|.++|.+|..++++++|++|
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999988764
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=3.1e-12 Score=89.43 Aligned_cols=89 Identities=28% Similarity=0.325 Sum_probs=49.3
Q ss_pred CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecc
Q 031521 68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (158)
Q Consensus 68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls 137 (158)
+.|.|.++.|... .+++.|++++|++.+..+..+..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3456666666431 245666666666664444445556666666666666664444445556666666666
Q ss_pred cCcccccCCccccCCCCCC
Q 031521 138 NNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 138 ~N~l~g~~P~~l~~l~~L~ 156 (158)
+|.+++..+..+.++++|+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCC
T ss_pred CCCccccCHHHhhCCcccC
Confidence 6666544333445555444
No 10
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=2e-12 Score=91.85 Aligned_cols=77 Identities=30% Similarity=0.399 Sum_probs=56.6
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+++..|..|..+++|+.|++++|++++..|..|..+++|++|++++|.+++..|..+..+++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 45677777777777666777777777777777777777666666777777777777777777777777777776654
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=4.5e-12 Score=90.75 Aligned_cols=90 Identities=24% Similarity=0.249 Sum_probs=56.3
Q ss_pred CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecc
Q 031521 68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (158)
Q Consensus 68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls 137 (158)
+.|.|.++.|... .+++.|++++|++.+..+..+..+++|+.|++++|++.+..+..|..+++|++|+++
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 4567888887542 256777777777775555556667777777777777764444445666666666666
Q ss_pred cCcccccCCccccCCCCCCC
Q 031521 138 NNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 138 ~N~l~g~~P~~l~~l~~L~~ 157 (158)
+|.+++..+..+.++++|++
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCE
T ss_pred CCcCCccCHhHhcCccCCCE
Confidence 66666443334555555543
No 12
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=4.7e-12 Score=90.15 Aligned_cols=74 Identities=28% Similarity=0.375 Sum_probs=36.7
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
.++.|++++|.+. .+|..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..|..+.++++|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence 3455555555554 4444555555555555555555544444455555555555555555544334444444443
No 13
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=5.8e-12 Score=88.35 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+++.|++++|.+.+..|..|..+++|+.|++++|++++..+..|..+++|++|+|++|.+++..+..+.++++|++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence 468899999999998888899999999999999999997555567899999999999999995544458888888753
No 14
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=3.5e-12 Score=90.63 Aligned_cols=91 Identities=25% Similarity=0.314 Sum_probs=76.2
Q ss_pred CCCcccceeeCCC----------CCEEEEEcCCCCCCccchh-hhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEec
Q 031521 68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVP-ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136 (158)
Q Consensus 68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~L 136 (158)
..|.|..+.|... .+++.|++++|.+.+..+. .+..+++|+.|++++|++++..|..|..+++|++|++
T Consensus 6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 4567777777542 3788999999999866554 4888999999999999999888999999999999999
Q ss_pred ccCcccccCCccccCCCCCCCC
Q 031521 137 YNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 137 s~N~l~g~~P~~l~~l~~L~~L 158 (158)
++|.+++..|..+.++++|++|
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCcCCccCHHHhcCCCCCCEE
Confidence 9999998887778888888754
No 15
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=6.8e-12 Score=96.30 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=73.5
Q ss_pred CCcccceeeCCC------------CCEEEEEcCC-CCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEe
Q 031521 69 PCTWFHITCNQD------------NRVTRLDLGN-SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135 (158)
Q Consensus 69 ~c~~~gv~c~~~------------~~l~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~ 135 (158)
.|.|..|.|... .+++.|+|++ |.+.+..+..|..+++|+.|+|++|++++..|..|.++++|++|+
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 588888888654 2589999996 999988888999999999999999999998888999999999999
Q ss_pred cccCcccccCCccccCCCCCCC
Q 031521 136 LYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 136 Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
|++|.+++..|..+..++ |+.
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQE 107 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCE
T ss_pred CCCCccceeCHHHcccCC-ceE
Confidence 999999955444555443 543
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.28 E-value=5e-12 Score=103.15 Aligned_cols=78 Identities=26% Similarity=0.155 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
..++.|+|++|.|++..+..|.++++|++|++++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 368999999999997777789999999999999999997667788999999999999999986555678888888764
No 17
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.28 E-value=6e-12 Score=91.27 Aligned_cols=61 Identities=26% Similarity=0.375 Sum_probs=31.0
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
+++.|++++|.+.+..+..|..+++|+.|++++|++.+..|..|..+++|++|+|++|.++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 4555555555555444444555555555555555555444444555555555555555444
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.22 E-value=2.9e-11 Score=87.61 Aligned_cols=77 Identities=27% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+..+..|..+++|+.|++++|++.+..|..|..+++|++|++++|.+++..|..+..+++|+.
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 45667777777777666666777777777777777777666777777777777777777777666777777776654
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.21 E-value=1.4e-11 Score=99.61 Aligned_cols=76 Identities=26% Similarity=0.226 Sum_probs=48.0
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..|..|..+++|++|++++|++.+..|..|..+++|++|++++|.+++..|..++++++|++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 5666666666666555666666666666666666666555556666666666666666666544444666665554
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.19 E-value=2.2e-11 Score=89.67 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=42.8
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+..+.++++|++
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 135 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence 4555666666655555555555666666666666665444445556666666666666666433334455555543
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.19 E-value=3.4e-11 Score=89.53 Aligned_cols=76 Identities=24% Similarity=0.233 Sum_probs=47.5
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+.++++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 4667777777777555556777777777777777776433344566666666666666666443344555555543
No 22
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=4e-11 Score=86.89 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+++.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+++|++|++++|.+++..|..+.++++|++|
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 457777777777776666677778888888888888876666667788888888888888887777777777777653
No 23
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=5.4e-11 Score=84.64 Aligned_cols=79 Identities=28% Similarity=0.291 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
..+++.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+++|++|++++|.+++..+..+.++++|++|
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEE
Confidence 3579999999999998888889999999999999999998888889999999999999999995555568888887653
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.16 E-value=4.6e-11 Score=91.47 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|+.++++++|+.
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 35677777777777777777777777777777777777777777777777777777777777777777777777654
No 25
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.15 E-value=7.5e-11 Score=85.45 Aligned_cols=75 Identities=28% Similarity=0.276 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|++++|.+.+..|..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..|..+.++++|+
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 445555555555544444455555555555555555432222334444444444444444444344444444443
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.15 E-value=4.9e-11 Score=91.73 Aligned_cols=76 Identities=32% Similarity=0.307 Sum_probs=42.6
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..+..+.++++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..++++++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 4566666666666444445666666666666666666555555666666666666666665322222555555543
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.13 E-value=2.2e-11 Score=92.53 Aligned_cols=77 Identities=38% Similarity=0.653 Sum_probs=55.6
Q ss_pred CCEEEEEcCC-CCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGN-SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..++++++|++
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 4567777774 7777777777777777777777777777777777777777777777777777777777777766654
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.13 E-value=8.3e-11 Score=96.15 Aligned_cols=76 Identities=25% Similarity=0.234 Sum_probs=46.9
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 5666666666666555556666666666666666666555555666666666666666666555556666655554
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.12 E-value=9.1e-11 Score=92.73 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCC-CccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTI-PVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+++.|++++|.+.+..|..|.++++|++|++++|.+.+.+ |..|..+++|++|++++|.+++..|..++++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 46889999999998877888888999999999999887665 4568888889999999888887778888888887754
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.10 E-value=1.1e-10 Score=95.38 Aligned_cols=78 Identities=21% Similarity=0.160 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
..++.|++++|.+++..|..|.++++|++|++++|++.+..|..|.++++|++|++++|.+++..|..++++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 467888888888887778888888888888888888887778888888888888888888887778788888877653
No 31
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.09 E-value=2.4e-10 Score=79.75 Aligned_cols=78 Identities=23% Similarity=0.218 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
..+++.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 357899999999998666666788999999999999999766667888999999999999998554445677887765
No 32
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.08 E-value=2.6e-10 Score=83.02 Aligned_cols=74 Identities=27% Similarity=0.369 Sum_probs=34.3
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|++++|.+++..+..|..+++|+.|++++|++. .+|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 3444444444444333333444444555555555444 4444444455555555555555533333344444443
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.07 E-value=2.4e-10 Score=93.22 Aligned_cols=77 Identities=29% Similarity=0.286 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCC-CCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL-KSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l-~~L~~ 157 (158)
.+++.|++++|++.+..|..|.++++|+.|++++|++++..|..|..+++|++|++++|.+++..|..+.++ ++|++
T Consensus 494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence 478899999999998888899999999999999999998888889999999999999999998888888877 56765
No 34
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.06 E-value=1.5e-10 Score=84.47 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCc-cCCCCCccccCCCCCCEEeccc-CcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNLKSLISLDLYN-NNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~~P~~l~~l~~L~~L 158 (158)
.+++.|++++|++++..+..|..+++|+.|++++|. +++..+..|..+++|++|++++ |.+++..|..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 467888888888886666678888888888888886 7755555778888888888887 88885555667777777653
No 35
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.06 E-value=1.3e-10 Score=78.89 Aligned_cols=77 Identities=30% Similarity=0.312 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccccc-CCccccCCCCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGK-IPPSLAKLKSLVFL 158 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~-~P~~l~~l~~L~~L 158 (158)
..+++.|++++|.+.+. ..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++. .|..++++++|++|
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 46789999999999865 7788999999999999999987888888899999999999999853 34778888888754
No 36
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=2.3e-10 Score=88.56 Aligned_cols=74 Identities=24% Similarity=0.195 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCCccchhhhc-CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 83 VTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 83 l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
++.|+|++|.+.+..+..+. .+++|+.|++++|++.+..|..|..+++|++|+|++|.+++..+..+.++++|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 45555555555544444443 455555555555555544344455555555555555555433333344444443
No 37
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.05 E-value=4.5e-10 Score=82.59 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=58.7
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+++.|++++|.+.+..+..|..+++|+.|++++|++++..+..+..+++|++|++++|.+++..|..++++++|++|
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 467888888888886666667788888888888888886555567778888888888888885555567777777653
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.05 E-value=5.2e-10 Score=79.88 Aligned_cols=77 Identities=26% Similarity=0.325 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+++..+..+.++++|++
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 45677777777777555555667777777777777777555555677777777777777777544444666666654
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.04 E-value=4.2e-10 Score=89.34 Aligned_cols=78 Identities=24% Similarity=0.275 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+++.|++++|++.+..+..|..+++|+.|++++|.+.+..|..|.++++|++|+|++|.+++..+..+.++++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 368888999999887778888888888888888888887777788888888888888888885555557777777653
No 40
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=1.2e-10 Score=79.02 Aligned_cols=79 Identities=29% Similarity=0.374 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCC-CCccccCCCCCCEEecccCcccccCC---ccccCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT-IPVELGNLKSLISLDLYNNNISGKIP---PSLAKLKSL 155 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~~P---~~l~~l~~L 155 (158)
..+++.|++++|.+.+.+|..+..+++|+.|++++|.+++. .|..+..+++|++|++++|.+++..+ ..++.+++|
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 35799999999999987888888899999999999999963 34789999999999999999996554 478888888
Q ss_pred CCC
Q 031521 156 VFL 158 (158)
Q Consensus 156 ~~L 158 (158)
++|
T Consensus 143 ~~L 145 (149)
T 2je0_A 143 TYL 145 (149)
T ss_dssp CEE
T ss_pred ccc
Confidence 764
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.03 E-value=4.8e-10 Score=83.33 Aligned_cols=75 Identities=25% Similarity=0.217 Sum_probs=35.2
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..++++++|+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 344445555544433333444445555555555555444444444555555555555555433333444444444
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.02 E-value=1.9e-10 Score=97.97 Aligned_cols=87 Identities=28% Similarity=0.209 Sum_probs=43.9
Q ss_pred CcccceeeCCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCC-CccccCCCCCCEEecccCcccccCCcc
Q 031521 70 CTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTI-PVELGNLKSLISLDLYNNNISGKIPPS 148 (158)
Q Consensus 70 c~~~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~~P~~ 148 (158)
|.+..|.+ -..+++.|++++|.+.+..|..|.++++|+.|++++|...+.+ |..|.++++|++|+|++|.+++..|..
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 34444444 3345666666666665555555555555555555555433333 344455555555555555555444444
Q ss_pred ccCCCCCCC
Q 031521 149 LAKLKSLVF 157 (158)
Q Consensus 149 l~~l~~L~~ 157 (158)
++++++|++
T Consensus 93 ~~~l~~L~~ 101 (844)
T 3j0a_A 93 FQGLFHLFE 101 (844)
T ss_dssp SCSCSSCCC
T ss_pred ccCCcccCE
Confidence 444444443
No 43
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.01 E-value=1.8e-10 Score=79.71 Aligned_cols=75 Identities=33% Similarity=0.375 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCC--ccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P--~~l~~l~~L~~L 158 (158)
.+++.|++++|.+.+. ..+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+++ +| ..+..+++|++|
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEE
Confidence 5689999999999865 778899999999999999998788888889999999999999984 44 678888888753
No 44
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.00 E-value=5.9e-10 Score=91.37 Aligned_cols=75 Identities=32% Similarity=0.410 Sum_probs=57.7
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccC-CccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI-PPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~-P~~l~~l~~L~~L 158 (158)
.+++.|++++|.+. .+|..+..+++|+.|++++|++++ +| .++.+++|+.|++++|.+++.. |..++++++|+.|
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 46778888888887 777778888888888888888885 66 6778888888888888887665 7777777777653
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.00 E-value=9.6e-10 Score=81.78 Aligned_cols=75 Identities=27% Similarity=0.311 Sum_probs=34.8
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..++++++|+
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 344444444444433333344444455555555554443333344455555555555555544443444444444
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.99 E-value=1.1e-09 Score=81.56 Aligned_cols=75 Identities=27% Similarity=0.283 Sum_probs=35.6
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..++++++|+
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 344444444444433333344455555555555555543333344555555555555555543333344444444
No 47
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.98 E-value=5.9e-10 Score=86.22 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=43.3
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+..+..|..+++|+.|++++|++.+..+..|..+++|++|+|++|.+++..|..+.++++|++
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence 34556666666666544455556666666666666665444444555555666666665555444555555555443
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.98 E-value=2.7e-10 Score=85.84 Aligned_cols=89 Identities=26% Similarity=0.285 Sum_probs=59.0
Q ss_pred CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCC--CCCccccCCCCCCEEe
Q 031521 68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG--TIPVELGNLKSLISLD 135 (158)
Q Consensus 68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g--~~p~~~~~l~~L~~L~ 135 (158)
+.|.|.+++|... .+++.|++++|.+....+..|.++++|+.|++++|.+.. ..|..+..+++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 4578888888642 368888999988884434446788888888888888762 2244555566666666
Q ss_pred cccCcccccCCccccCCCCCCC
Q 031521 136 LYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 136 Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++|.+. .+|..+.++++|++
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCccc-cChhhcCCCCCCCE
Confidence 6666665 44555555555543
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.98 E-value=8.4e-10 Score=87.89 Aligned_cols=75 Identities=27% Similarity=0.312 Sum_probs=38.0
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|++++|.+.+..+..|.++++|+.|++++|.+.+..|..|.++++|++|++++|.+++..+..+.++++|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 445555555555544445555555555555555555544455555555555555555555422222344444443
No 50
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=1.5e-09 Score=75.51 Aligned_cols=73 Identities=29% Similarity=0.308 Sum_probs=62.8
Q ss_pred EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+.+++++|+++ .+|..+. ++++.|++++|++++..|..|..+++|++|++++|.+++..|..+.++++|++|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 358999999998 5776663 789999999999998888899999999999999999996666667888888764
No 51
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.96 E-value=4.2e-10 Score=94.66 Aligned_cols=75 Identities=31% Similarity=0.526 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+++.|+|++|.+. .+|..|.++++|+.|++++|.++ .+|..|+.+++|++|+|++|.++ .+|..++++++|++|
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence 45677777777777 67777777888888888888877 67777777888888888888776 777777777777654
No 52
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.96 E-value=8e-10 Score=76.33 Aligned_cols=79 Identities=27% Similarity=0.350 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCC-CCccccCCCCCCEEecccCcccccCC---ccccCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT-IPVELGNLKSLISLDLYNNNISGKIP---PSLAKLKSL 155 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~~P---~~l~~l~~L 155 (158)
..+++.|++++|.+.+.+|..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 35789999999999987888888899999999999999953 22789999999999999999995544 378888888
Q ss_pred CCC
Q 031521 156 VFL 158 (158)
Q Consensus 156 ~~L 158 (158)
++|
T Consensus 150 ~~L 152 (168)
T 2ell_A 150 TYL 152 (168)
T ss_dssp CEE
T ss_pred cEe
Confidence 754
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.95 E-value=8.9e-10 Score=87.03 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=38.8
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 445555555555544445555555555555555555544455555555555555555555533333344555444
No 54
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=1.3e-09 Score=76.26 Aligned_cols=72 Identities=24% Similarity=0.215 Sum_probs=61.6
Q ss_pred EEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 84 TRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 84 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
+.+++++|++. .+|..+. ++|+.|++++|++.+..|..|..+++|++|+|++|.+++..+..+.++++|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 57899999997 7777664 799999999999998888899999999999999999996544457888888754
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.95 E-value=1.1e-09 Score=83.40 Aligned_cols=80 Identities=28% Similarity=0.394 Sum_probs=65.0
Q ss_pred CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecc
Q 031521 68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (158)
Q Consensus 68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls 137 (158)
+.|.+..+.|... .+++.|++++|.+.+..|..|.++++|+.|++++|++++..|..+..+++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3567888888632 368899999999987777788999999999999999997778888888888888888
Q ss_pred cCcccccCCcc
Q 031521 138 NNNISGKIPPS 148 (158)
Q Consensus 138 ~N~l~g~~P~~ 148 (158)
+|.++ .+|..
T Consensus 111 ~n~l~-~l~~~ 120 (332)
T 2ft3_A 111 KNHLV-EIPPN 120 (332)
T ss_dssp SSCCC-SCCSS
T ss_pred CCcCC-ccCcc
Confidence 88877 55543
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.94 E-value=1.8e-09 Score=82.14 Aligned_cols=81 Identities=23% Similarity=0.362 Sum_probs=67.9
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecc
Q 031521 68 NPCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLY 137 (158)
Q Consensus 68 ~~c~~~gv~c~~----------~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls 137 (158)
+.|.+..+.|.. ...++.|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 456788888863 2468899999999997777789999999999999999998779999999999999999
Q ss_pred cCcccccCCccc
Q 031521 138 NNNISGKIPPSL 149 (158)
Q Consensus 138 ~N~l~g~~P~~l 149 (158)
+|.++ .+|..+
T Consensus 109 ~n~l~-~l~~~~ 119 (330)
T 1xku_A 109 KNQLK-ELPEKM 119 (330)
T ss_dssp SSCCS-BCCSSC
T ss_pred CCcCC-ccChhh
Confidence 99887 566543
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.94 E-value=1.6e-09 Score=85.73 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=42.8
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.++.|++++|++.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 4556666666666555555666666666666666665544455555666666666666555333334555555443
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.94 E-value=1.3e-09 Score=88.63 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+++..|..|..+++|++|++++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++
T Consensus 76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 34566666666666555555666666666666666665 45544 56666666666666664 34466777776664
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.93 E-value=1.8e-09 Score=80.58 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCc-cCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+..|..+..+++|+.|++++|. +....|..+..+++|++|++++|.+++..|..+.++++|++
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 356677777777766656667777777777777776 55444666777777777777777777655666666666654
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.93 E-value=1.6e-09 Score=88.58 Aligned_cols=77 Identities=21% Similarity=0.304 Sum_probs=49.1
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+..|..|.++++|++|++++|.+.+..|..++.+++|++|++++|.+.+ .+|..++++++|++
T Consensus 80 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 80 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 356666666666665556666666666666666666665444556666666666666666654 45667777776664
No 61
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.93 E-value=7.7e-10 Score=78.53 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=36.7
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|++++|.+.+..+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+.+.+| .+.++++|+
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK 162 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence 45555555555554444455555555555555555554444455555555555555554222333 344444443
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.93 E-value=1.6e-09 Score=88.87 Aligned_cols=76 Identities=20% Similarity=0.109 Sum_probs=45.6
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..|..|..+++|+.|++++|.+.+..|..|+.+++|++|++++|.+++..+..++++++|++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 4556666666666555556666666666666666666555555566666666666666666332223455555543
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.92 E-value=2.2e-09 Score=80.82 Aligned_cols=76 Identities=29% Similarity=0.229 Sum_probs=43.3
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+++..+..|..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++..+..+.++++|++
T Consensus 101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176 (290)
T ss_dssp TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence 4556666666666444455666666666666666666444444556666666666666666333333455555543
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.92 E-value=2.4e-09 Score=80.54 Aligned_cols=74 Identities=24% Similarity=0.194 Sum_probs=37.5
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|++++|.+.+..+..|..+++|+.|++++|++++..+..+..+++|++|++++|.++ .+|..+..+.+|+
T Consensus 125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198 (290)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCC
Confidence 4555555555555444444455555555555555555333333445555555555555555 4555444444443
No 65
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.92 E-value=1.4e-09 Score=84.62 Aligned_cols=61 Identities=23% Similarity=0.171 Sum_probs=31.0
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|++|++++|.++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 130 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC
Confidence 3445555555555444444555555555555555555444444455555555555555554
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.91 E-value=1.5e-09 Score=89.84 Aligned_cols=76 Identities=25% Similarity=0.254 Sum_probs=48.5
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..|..+.++++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..++++++|++
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCE
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCE
Confidence 4566666666666655666666666666666666666433335666777777777777776554556666666654
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.91 E-value=2.6e-09 Score=79.66 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCC-CCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSN-LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|. +....|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..++++++|++
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 467888888886 66555777778888888888888888766777788888888888888887555555777777765
No 68
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.91 E-value=2e-09 Score=82.40 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=64.8
Q ss_pred EEEcCCC-CCCccchhhhcCCCCCCEEeccC-CccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 85 RLDLGNS-NLSGRLVPELGKLEHLQYLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 85 ~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~-n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.++.+++ ++. .+|. +..+++|+.|++++ |.+.+..|..|..+++|+.|+|++|.+++..|..|+++++|++|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 5689998 888 5888 99999999999996 99998777889999999999999999999888899999998764
No 69
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.91 E-value=3.1e-10 Score=93.98 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCCCCCcc-----------------chhhhc--CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCc
Q 031521 80 DNRVTRLDLGNSNLSGR-----------------LVPELG--KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~ 140 (158)
..+++.|++++|.+.|. +|+.+. ++++|++|++++|.+.|.+|..++++++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 45788999999999985 888888 89999999999999999999999999999999999998
Q ss_pred -ccc-cCCccccCC
Q 031521 141 -ISG-KIPPSLAKL 152 (158)
Q Consensus 141 -l~g-~~P~~l~~l 152 (158)
++| .+|..++++
T Consensus 285 ~l~~~~lp~~~~~L 298 (636)
T 4eco_A 285 GISGEQLKDDWQAL 298 (636)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCccccchHHHHhh
Confidence 888 788777665
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.91 E-value=2.9e-09 Score=80.11 Aligned_cols=77 Identities=29% Similarity=0.283 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCC-CCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLK-SLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~-~L~~ 157 (158)
.+++.|++++|.+.+..|..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+++..|..+..++ +|++
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 4677888888888776677777888888888888888766666777788888888888888877777777663 5654
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.90 E-value=4.9e-10 Score=84.96 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCCCCccchhhhcCC-----CCCCEEeccCCccCCCCCccccCCCCCCEEecccCccccc
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKL-----EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGK 144 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ 144 (158)
.+++.|++++|.+.+. |..+..+ ++|++|++++|++.+..|..++.+++|++|++++|.+.|.
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 3455556666655544 4444444 5566666666666555445566666666666666655543
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.90 E-value=3.7e-09 Score=78.46 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=6.5
Q ss_pred cCCCCCCEEecccCccc
Q 031521 126 GNLKSLISLDLYNNNIS 142 (158)
Q Consensus 126 ~~l~~L~~L~Ls~N~l~ 142 (158)
..+++|++|++++|.++
T Consensus 178 ~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TTCTTCCEEECCSSCCS
T ss_pred ccCCCcCEEECCCCcCC
Confidence 33333333333333333
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.90 E-value=2.9e-09 Score=81.00 Aligned_cols=76 Identities=29% Similarity=0.312 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCE
Confidence 45677777777777666667777777777777777777655556777777777777777777 66776666666654
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.90 E-value=3.3e-09 Score=78.77 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L 158 (158)
.+++.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|++|++++|.+++ .+|..++++++|++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 468888888888887767778888888888888888886655567788888888888888875 357777777777653
No 75
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=8.7e-10 Score=76.90 Aligned_cols=74 Identities=22% Similarity=0.173 Sum_probs=40.7
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCc--cccCCCCCCEEecccCcccccCCcc----ccCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV--ELGNLKSLISLDLYNNNISGKIPPS----LAKLKSL 155 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~Ls~N~l~g~~P~~----l~~l~~L 155 (158)
+++.|++++|.+.+..+..+..+++|+.|++++|++. .+|. .+..+++|++|++++|.++ .+|.. +..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 4556666666665332233355666666666666664 3444 4555666666666666665 44443 5555555
Q ss_pred CC
Q 031521 156 VF 157 (158)
Q Consensus 156 ~~ 157 (158)
++
T Consensus 143 ~~ 144 (176)
T 1a9n_A 143 RV 144 (176)
T ss_dssp SE
T ss_pred ce
Confidence 43
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.90 E-value=1.7e-09 Score=87.35 Aligned_cols=77 Identities=22% Similarity=0.212 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+..|..|..+++|++|++++|++.+..|..++.+++|++|++++|.+++ .+|..++++++|++
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 467778888888776666777777788888888887776555567777778888887777765 34566677776664
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.89 E-value=2e-09 Score=86.57 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=61.2
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVFL 158 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L 158 (158)
..+++.|++++|.+.+..|..|..+++|++|++++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 356888888888888777788888888888888888888 56665 78888888888888886 577888888888764
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.89 E-value=2.8e-09 Score=84.57 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=51.9
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..|..|..+++|+.|++++|++.+..|..|..+++|+.|++++|.+++..+..+..+++|+.
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 4556666666666666667777777777777777777666667777777777777777777554455666666654
No 79
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.88 E-value=3e-09 Score=84.68 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=52.5
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+..|..|.++++|+.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+.++++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 45777777777777666777777777777777777777444445667777777777777776666666666666654
No 80
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.88 E-value=2.9e-09 Score=84.22 Aligned_cols=76 Identities=28% Similarity=0.295 Sum_probs=52.0
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..|..|..+++|+.|++++|++.+..|..|..+++|+.|+|++|.+++..+..+..+++|+.
T Consensus 208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 4556666666666666666777777777777777777666667777777777777777777555555666666654
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.87 E-value=3.4e-09 Score=85.79 Aligned_cols=76 Identities=25% Similarity=0.197 Sum_probs=42.3
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..+..|.++++|++|++++|++.+..|..|..+++|++|++++|.+++..+..++++++|++
T Consensus 53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence 4555666666555444455555666666666666655444455556666666666666655332224555555544
No 82
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.87 E-value=1.6e-09 Score=91.22 Aligned_cols=75 Identities=28% Similarity=0.426 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
..++.|+|++|.+. .+|..+..+++|+.|++++|.++ .+|..|..+++|++|+|++|.++ .+|..++++++|++|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 56889999999998 78888889999999999999999 89999999999999999999999 899999999998764
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.87 E-value=4.1e-09 Score=86.50 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+++.|++++|.+.+..|..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 468899999999998777778889999999999999985444456889999999999999988777788888888754
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.86 E-value=3e-09 Score=85.45 Aligned_cols=74 Identities=23% Similarity=0.194 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+..|..|..+++|++|++++|++++..|..|..+++|++|++++|.++ .+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccE
Confidence 46777888888877666677777778888888888877666777777788888888888777 56655 5666654
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.86 E-value=2.1e-09 Score=76.21 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+++.|++++|.+. .++.+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..++++++|++|
T Consensus 66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 46889999999765 34578899999999999999998888899999999999999999998788889999888764
No 86
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.85 E-value=2.2e-09 Score=81.86 Aligned_cols=75 Identities=28% Similarity=0.341 Sum_probs=47.9
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence 5566666666666555566666666666666666666555556666666666666666666 56666666665554
No 87
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.85 E-value=6.1e-09 Score=80.92 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCcc-ccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
..+++.|++++|.+.+..|..+..+++|+.|++++|++.. +|.. +..+++|++|++++|.+++..|..++++++|++|
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence 3568888888888887777778888888888888888884 5544 5788888888888888887666678887777653
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.83 E-value=3.1e-09 Score=81.81 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=71.0
Q ss_pred CCCcccceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCc-cccCCCCCCE-Ee
Q 031521 68 NPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV-ELGNLKSLIS-LD 135 (158)
Q Consensus 68 ~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~-~~~~l~~L~~-L~ 135 (158)
+.|.+..|.|... .++++|+|++|+|+...+..|.++++|++|++++|++.+.+|. .|.++++++. +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 4577888999642 3689999999999955455789999999999999998776664 5778887765 55
Q ss_pred cccCcccccCCccccCCCCCCCC
Q 031521 136 LYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 136 Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
++.|.++...|..+.++++|++|
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEE
T ss_pred ccCCcccccCchhhhhccccccc
Confidence 66788886667778888888753
No 89
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.83 E-value=3.4e-09 Score=86.57 Aligned_cols=77 Identities=22% Similarity=0.077 Sum_probs=49.7
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+..|..|.++++|+.|++++|++.+..|..|+.+++|++|++++|.+++..|..++++++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 45666777777766666666666777777777777666666666666666666666666666443455555555554
No 90
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.83 E-value=2.1e-09 Score=74.89 Aligned_cols=75 Identities=25% Similarity=0.282 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc--cccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~--~l~~l~~L~~L 158 (158)
.+++.|++++|.+.+. +.+..+++|+.|++++|++++..|..+..+++|++|++++|.++ .+|. .+.++++|++|
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 3799999999999965 67899999999999999999644444589999999999999997 6776 78888888753
No 91
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.83 E-value=4.6e-09 Score=80.69 Aligned_cols=78 Identities=21% Similarity=0.193 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc--cccCCCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVF 157 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~--~l~~l~~L~~ 157 (158)
..+++.|++++|.+.+..|..|..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|. .+.++++|++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence 356888888888888777777888888888888888888543344788888888888888888 4554 6777777765
Q ss_pred C
Q 031521 158 L 158 (158)
Q Consensus 158 L 158 (158)
|
T Consensus 154 L 154 (353)
T 2z80_A 154 L 154 (353)
T ss_dssp E
T ss_pred E
Confidence 3
No 92
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.82 E-value=3.7e-09 Score=86.66 Aligned_cols=72 Identities=28% Similarity=0.394 Sum_probs=65.4
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .++++++|++|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEE
Confidence 47889999999995 666 999999999999999999 899999999999999999999995 78 78999988764
No 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.79 E-value=1e-08 Score=84.96 Aligned_cols=78 Identities=27% Similarity=0.244 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+++.|++++|.+.+..+..|.++++|++|++++|++.+..|..|+.+++|++|++++|.+++..|..++++++|++|
T Consensus 73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 467888888888885544568888888888888888886666778888888888888888887777777788777653
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.79 E-value=7e-09 Score=84.33 Aligned_cols=76 Identities=25% Similarity=0.268 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
..+++.|++++|.+.+..|..|..+++|+.|++++|++++..|..|..+++|++|++++|.++ .+|.. .+++|++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L 126 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHL 126 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEE
Confidence 357899999999999888889999999999999999999888889999999999999999998 67776 67777653
No 95
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.1e-09 Score=93.92 Aligned_cols=74 Identities=26% Similarity=0.292 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCCCCc-----------------cchhhhc--CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCc
Q 031521 80 DNRVTRLDLGNSNLSG-----------------RLVPELG--KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNN 140 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~ 140 (158)
..+++.|++++|.+.+ .+|+.+. ++++|+.|++++|.+.|.+|..+.++++|++|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4578889999999887 3888877 88999999999999888899888888899999998887
Q ss_pred -ccc-cCCccccCCC
Q 031521 141 -ISG-KIPPSLAKLK 153 (158)
Q Consensus 141 -l~g-~~P~~l~~l~ 153 (158)
++| .+|..+++++
T Consensus 527 ~lsg~~iP~~i~~L~ 541 (876)
T 4ecn_A 527 GISAAQLKADWTRLA 541 (876)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CcccccchHHHHhhh
Confidence 887 7777666544
No 96
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.78 E-value=1.2e-08 Score=82.59 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG-KIPPSLAKLKSLVFL 158 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L 158 (158)
..+++.|++++|.+.+..|..|..+++|+.|++++|++.+..+..++.+++|++|++++|.+++ .+|..++++++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred chhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence 3578999999999987777888899999999999999886544468889999999999998886 478888888888754
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.77 E-value=7.1e-09 Score=83.37 Aligned_cols=73 Identities=25% Similarity=0.268 Sum_probs=37.7
Q ss_pred CEEEEEcCCCCCCccchhhhc-CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..|..+. .+++|+.|++++|.+++. |. ...+++|++|++++|.+++ +|+.+..+++|++
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~ 218 (487)
T 3oja_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW 218 (487)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSE
T ss_pred CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccE
Confidence 344555555555544444443 345555555555555532 21 2235666666666666664 3444666666554
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.77 E-value=8.9e-09 Score=87.68 Aligned_cols=78 Identities=33% Similarity=0.381 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCcc--ccCCCCCCEEecccCcccccCC-ccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE--LGNLKSLISLDLYNNNISGKIP-PSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~--~~~l~~L~~L~Ls~N~l~g~~P-~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+..|..|.++++|+.|++++|.+.+.+|.. +.++++|++|++++|.+.+..| ..++++++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 45777777777777777777777777888888777777666554 7777777888887777775544 45777777765
Q ss_pred C
Q 031521 158 L 158 (158)
Q Consensus 158 L 158 (158)
|
T Consensus 153 L 153 (844)
T 3j0a_A 153 I 153 (844)
T ss_dssp E
T ss_pred E
Confidence 3
No 99
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.75 E-value=2.5e-09 Score=81.02 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=36.5
Q ss_pred CEEEEEcCCCCCCccchhhh--cCCCCCCEEeccCCccCCCCCccccCC-----CCCCEEecccCcccccCCccccCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPEL--GKLEHLQYLELYKNNIQGTIPVELGNL-----KSLISLDLYNNNISGKIPPSLAKLKS 154 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~g~~p~~~~~l-----~~L~~L~Ls~N~l~g~~P~~l~~l~~ 154 (158)
+++.|++++|.+.+.+|..+ ..+++|+.|++++|++++. |..+..+ ++|++|++++|.+.+..|..++++++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 44555555555554444443 4455555555555555543 4444433 45555555555555444444555444
Q ss_pred CC
Q 031521 155 LV 156 (158)
Q Consensus 155 L~ 156 (158)
|+
T Consensus 175 L~ 176 (312)
T 1wwl_A 175 LS 176 (312)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.73 E-value=7.4e-09 Score=78.27 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=33.6
Q ss_pred EEEEEcCCCCCCccchhhh--cCCCCCCEEeccCCccCCCCC----ccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 83 VTRLDLGNSNLSGRLVPEL--GKLEHLQYLELYKNNIQGTIP----VELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 83 l~~L~l~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~g~~p----~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++|++++|.+.+..|..+ ..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..++++++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 5555555555555555444 444445555555444444332 1222344444444444444433333444444433
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.66 E-value=1.3e-08 Score=73.98 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=49.2
Q ss_pred CCEEEEEcCCCC-CCccchhhhcCCCCCCEEeccC-CccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 81 NRVTRLDLGNSN-LSGRLVPELGKLEHLQYLELYK-NNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 81 ~~l~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~-n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
.+++.|++++|. ++...+..|..+++|+.|++++ |++++..+..|..+++|++|++++|.+++ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~ 130 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD 130 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence 457777777775 6644455677777777777777 77775555566777777777777777763 555 55555554
No 102
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.61 E-value=2.9e-08 Score=74.19 Aligned_cols=77 Identities=23% Similarity=0.278 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCCCCc--cchhhhcCCCCCCEEeccCCccCCCCCccccCCC--CCCEEecccCcccccCCc-------c
Q 031521 80 DNRVTRLDLGNSNLSG--RLVPELGKLEHLQYLELYKNNIQGTIPVELGNLK--SLISLDLYNNNISGKIPP-------S 148 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~--~L~~L~Ls~N~l~g~~P~-------~ 148 (158)
..+++.|+|++|.+.+ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|+|++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3579999999999997 5567778899999999999999964 3344444 899999999999987773 3
Q ss_pred ccCCCCCCCC
Q 031521 149 LAKLKSLVFL 158 (158)
Q Consensus 149 l~~l~~L~~L 158 (158)
+..+++|+.|
T Consensus 247 l~~~P~L~~L 256 (267)
T 3rw6_A 247 RERFPKLLRL 256 (267)
T ss_dssp HHHCTTCCEE
T ss_pred HHHCcccCeE
Confidence 5667777653
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.59 E-value=4.8e-08 Score=73.80 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=39.1
Q ss_pred CCEEEEEcCCCCCCccchhhhcCC---CCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKL---EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l---~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
.+++.|++++|.+.+..|+.+..+ ++|+.|++++|+++ .+|..+. ++|++|++++|.+++ +|. +..+++|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~ 297 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVD 297 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCcc
Confidence 345566666666665555555544 46666666666666 4555443 566666666666663 222 34444444
No 104
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.58 E-value=4.8e-08 Score=74.51 Aligned_cols=73 Identities=27% Similarity=0.361 Sum_probs=44.5
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+. +.+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..| +..+++|+.
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 3456666666666543 345566666666666666666666666666777777777777664433 555555543
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.57 E-value=6.9e-08 Score=77.59 Aligned_cols=72 Identities=24% Similarity=0.267 Sum_probs=40.1
Q ss_pred ccceeeCCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCcccc-CCCCCCEEecccCcccc
Q 031521 72 WFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELG-NLKSLISLDLYNNNISG 143 (158)
Q Consensus 72 ~~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g 143 (158)
..++.+....+++.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 3334444344556666666666655555555556666666666666655555543 45566666666666553
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.57 E-value=1.2e-07 Score=71.23 Aligned_cols=57 Identities=32% Similarity=0.370 Sum_probs=27.1
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
+++.|++++|.+.+. +.+..+++|+.|++++|++++. +.+..+++|++|++++|.++
T Consensus 113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 455555555555532 2344445555555555554432 23444444444444444444
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.55 E-value=5.2e-08 Score=73.87 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=24.3
Q ss_pred CCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 104 LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 104 l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 3444444444444442 3333445555555555555555 3444454444444
No 108
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.52 E-value=1.1e-07 Score=72.03 Aligned_cols=73 Identities=25% Similarity=0.277 Sum_probs=44.6
Q ss_pred CEEEEEcCCCCCCccchhhhc-CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+..+..+. .+++|+.|++++|.+++. |. ...+++|++|++++|.++ .+|..+..+++|++
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218 (317)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSE
T ss_pred CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccE
Confidence 466666666666655555443 466666666666666633 22 234677777777777777 34555666666654
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.52 E-value=2e-07 Score=69.06 Aligned_cols=70 Identities=33% Similarity=0.450 Sum_probs=37.5
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+++ + +.+..+++|+.|++++|++++ +| .+..+++|++|++++|.+++. ..+..+++|++
T Consensus 107 ~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 107 CLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp SCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred cccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 34445555555443 2 235556666666666666653 23 455566666666666666543 34555555543
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.51 E-value=1.9e-07 Score=70.11 Aligned_cols=71 Identities=32% Similarity=0.346 Sum_probs=40.4
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+ + +.+..+++|+.|++++|++.+ + +.+..+++|++|++++|.+++. ..+..+++|++
T Consensus 90 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 160 (291)
T 1h6t_A 90 KNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 160 (291)
T ss_dssp TTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred CCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence 456666666666653 2 236666666666666666664 2 3455666666666666666532 34555555543
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.50 E-value=2.9e-07 Score=69.60 Aligned_cols=69 Identities=30% Similarity=0.457 Sum_probs=30.8
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|++++|.+.+. +.+..+++|+.|++++|++.+ +|. +..+++|++|++++|.+++ +|. ++.+++|+
T Consensus 86 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 154 (308)
T 1h6u_A 86 KITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQ 154 (308)
T ss_dssp SCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred CCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCcc
Confidence 344444444444421 134444445555555554443 222 4445555555555555542 222 44444444
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.49 E-value=1.1e-08 Score=77.69 Aligned_cols=77 Identities=26% Similarity=0.226 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCCCCcc-chhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccC-ccccc-CCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGR-LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN-NISGK-IPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N-~l~g~-~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+. ++..+..+++|+.|++++|.+++..|..+..+++|++|++++| .+++. +|..+.++++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 4567777777777654 6666777777777777777777667777777777777777777 56642 5555666666654
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.48 E-value=1.6e-08 Score=76.78 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=42.5
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCC-ccCCC-CCccccCCCCCCEEecccC-ccccc-CCccccCCC-CC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN-NIQGT-IPVELGNLKSLISLDLYNN-NISGK-IPPSLAKLK-SL 155 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~g~-~p~~~~~l~~L~~L~Ls~N-~l~g~-~P~~l~~l~-~L 155 (158)
.+++.|++++|.+.+..+..+..+++|+.|++++| .+++. ++..+..+++|++|++++| .+++. +|..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 34566666666665555555666666666666666 44432 4444555666666666666 55532 344455555 44
Q ss_pred CC
Q 031521 156 VF 157 (158)
Q Consensus 156 ~~ 157 (158)
++
T Consensus 198 ~~ 199 (336)
T 2ast_B 198 TQ 199 (336)
T ss_dssp CE
T ss_pred CE
Confidence 43
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.47 E-value=3.2e-07 Score=72.94 Aligned_cols=71 Identities=34% Similarity=0.527 Sum_probs=47.6
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+. ++ +..+++|+.|++++|++.+.. . +..+++|++|++++|.+++ +|. +.++++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADIT-P-LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNR 138 (466)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSE
T ss_pred cCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccCh-h-hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCE
Confidence 4677778888777744 33 777777777777777777433 3 6777777777777777763 343 566666654
No 115
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.45 E-value=3.5e-07 Score=69.15 Aligned_cols=71 Identities=32% Similarity=0.472 Sum_probs=43.3
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+ ++. +..+++|+.|++++|.+++. +. +..+++|++|++++|.+++ +|. +.++++|+.
T Consensus 107 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 107 QSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT 177 (308)
T ss_dssp TTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred CCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence 457777777777764 332 66677777777777776643 32 5666666666666666663 333 555555543
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.45 E-value=6.6e-08 Score=79.36 Aligned_cols=68 Identities=29% Similarity=0.410 Sum_probs=35.3
Q ss_pred cccce-eeCCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc
Q 031521 71 TWFHI-TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP 147 (158)
Q Consensus 71 ~~~gv-~c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~ 147 (158)
.|.++ .|.. ++++.|++++|++++ +|..+. ++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|.
T Consensus 49 ~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~ 117 (571)
T 3cvr_A 49 AVSLLKECLI-NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE 117 (571)
T ss_dssp HHHHHHHHHH-TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC
T ss_pred hhhhcccccc-CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch
Confidence 56666 4542 345666666666654 444332 45555555555555 344 234555555555555553 444
No 117
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.44 E-value=2.7e-07 Score=70.34 Aligned_cols=72 Identities=29% Similarity=0.373 Sum_probs=43.7
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+. +.+..+++|+.|++++|.+.+ + +.+..+++|+.|++++|.+.+..|..++++++|++
T Consensus 244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 455555655555532 345566666666666666664 2 33566667777777777776666666666666654
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.43 E-value=3.9e-07 Score=75.27 Aligned_cols=57 Identities=32% Similarity=0.370 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
+++.|+|++|.+.+. +.+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.++
T Consensus 110 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 455555555555431 2344444444444444444432 23444444444444444444
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.43 E-value=3.7e-09 Score=75.00 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
..+++.|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++ +| .++.+++|++
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRV 119 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence 3578899999999986 66 7888999999999999998 688877778899999999999985 55 4666666654
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.41 E-value=4.2e-07 Score=67.28 Aligned_cols=72 Identities=28% Similarity=0.345 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
..+++.|++++|.+.+.. + +..+++|+.|++++|++.+ +|.. .. ++|++|++++|.+++ +| .+.++++|++|
T Consensus 62 l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEIL 133 (263)
T ss_dssp CTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEE
Confidence 357899999999998544 4 8899999999999999985 5543 33 889999999999985 44 58888888753
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.41 E-value=4.3e-07 Score=74.97 Aligned_cols=69 Identities=36% Similarity=0.508 Sum_probs=32.6
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|+|++|.+.+. +.+..+++|+.|++++|.+.+..| +..+++|+.|+|++|.+++ +| .+..+++|+
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~ 200 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD 200 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence 344555555555432 344455555555555555553333 4455555555555555542 22 244444443
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.41 E-value=4.3e-07 Score=72.19 Aligned_cols=69 Identities=32% Similarity=0.373 Sum_probs=38.0
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.|++++|.+.+..| +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..| +..+++|+
T Consensus 310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 45555555555554333 44555555555555555542 345566666666666666665444 55555554
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.35 E-value=7.8e-07 Score=70.94 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+++. | +..+++|++|++++|.+++ +| ++.+++|++|++++|.+++ +| ++++++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence 5678888888888754 3 7778888888888888886 33 7788888888888888885 44 677777665
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.32 E-value=2.2e-06 Score=68.33 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=37.4
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP 146 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P 146 (158)
.+++.|++++|.+.+. .+..+++|+.|++++|++++ +| +..+++|++|++++|.+++..+
T Consensus 191 ~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 3455666666666543 25566667777777777665 44 6666777777777777765433
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.32 E-value=7.9e-07 Score=72.96 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=33.5
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCC-------CEEecccCcccccCCccccCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSL-------ISLDLYNNNISGKIPPSLAKLKS 154 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L-------~~L~Ls~N~l~g~~P~~l~~l~~ 154 (158)
+++.|++++|.+++ +|. +. ++|+.|++++|+++ .+|. +.. +| +.|++++|.++ .+|..+.++++
T Consensus 161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~ 231 (571)
T 3cvr_A 161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP 231 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence 34445555555443 333 33 45555555555555 4444 332 44 66666666666 45665555555
Q ss_pred CCC
Q 031521 155 LVF 157 (158)
Q Consensus 155 L~~ 157 (158)
|++
T Consensus 232 L~~ 234 (571)
T 3cvr_A 232 TCT 234 (571)
T ss_dssp TEE
T ss_pred CCE
Confidence 543
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.32 E-value=4.1e-09 Score=74.78 Aligned_cols=74 Identities=24% Similarity=0.255 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCC--ccccCCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P--~~l~~l~~L~~L 158 (158)
.+++.|++++|.+. .+|..+..+++|+.|++++|++++ +| .+..+++|++|++++|.+++ +| ..+..+++|++|
T Consensus 70 ~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 70 ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDL 145 (198)
T ss_dssp TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEE
T ss_pred CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEE
Confidence 46788888888888 667777777888888888888885 55 57778888888888888873 33 357777777653
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.31 E-value=7.2e-08 Score=74.82 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCCCC----ccchhhhcCCCCCCEEeccCCccCCC----CCccc--cCCCCCCEEecccCcccc----cCC
Q 031521 81 NRVTRLDLGNSNLS----GRLVPELGKLEHLQYLELYKNNIQGT----IPVEL--GNLKSLISLDLYNNNISG----KIP 146 (158)
Q Consensus 81 ~~l~~L~l~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~--~~l~~L~~L~Ls~N~l~g----~~P 146 (158)
.+++.|++++|.+. +.+|..+..+++|+.|++++|.+++. +|..+ +.+++|++|++++|.+++ .+|
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 45667777777764 45566666667777777777776644 34444 236677777777777765 366
Q ss_pred ccc-cCCCCCCC
Q 031521 147 PSL-AKLKSLVF 157 (158)
Q Consensus 147 ~~l-~~l~~L~~ 157 (158)
..+ .++++|++
T Consensus 296 ~~l~~~l~~L~~ 307 (386)
T 2ca6_A 296 TVIDEKMPDLLF 307 (386)
T ss_dssp HHHHHHCTTCCE
T ss_pred HHHHhcCCCceE
Confidence 555 44555543
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.30 E-value=1.1e-06 Score=70.07 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=44.2
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|++++|.+.+ +| ++..+++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .++++++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCE
Confidence 356777777777774 55 47777777777777777774 55432 466666666666664 55 3566666553
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.29 E-value=1.4e-07 Score=72.74 Aligned_cols=68 Identities=26% Similarity=0.275 Sum_probs=51.0
Q ss_pred CEEEEEcCCCCCCccchhhhcCC-----CCCCEEeccCCccCCCCCccc----cCC-CCCCEEecccCcccccCCccc
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKL-----EHLQYLELYKNNIQGTIPVEL----GNL-KSLISLDLYNNNISGKIPPSL 149 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~g~~p~~~----~~l-~~L~~L~Ls~N~l~g~~P~~l 149 (158)
++++|++++|.+.+..+..+..+ ++|+.|++++|++++..+..+ ..+ ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 129 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence 68888888888887777666664 888888888888886665543 334 788888888888886555443
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.26 E-value=2.3e-07 Score=71.98 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCEEEEEcCCC---CCCccchhhh-------cCCCCCCEEeccCCccCC----CCCccccCCCCCCEEecccCccc
Q 031521 81 NRVTRLDLGNS---NLSGRLVPEL-------GKLEHLQYLELYKNNIQG----TIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 81 ~~l~~L~l~~n---~l~~~~p~~~-------~~l~~L~~L~l~~n~l~g----~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
.+++.|++++| .+.+.+|..+ ..+++|+.|++++|.+++ .+|..+..+++|++|++++|.++
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 34556666553 2333344333 455666666666666654 24455555666666666666554
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.24 E-value=2e-06 Score=71.21 Aligned_cols=67 Identities=25% Similarity=0.387 Sum_probs=41.4
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+.++++|+.
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCE
Confidence 45566666666653 33 33456666666666666 4554 4566777777777777 66766766666654
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.22 E-value=5.9e-07 Score=74.42 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCC
Q 031521 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL 152 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l 152 (158)
..+++.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..|..+.++
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 367999999999999 5665 6789999999999999 789999999999999999999998887766543
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.21 E-value=6.5e-07 Score=71.33 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=32.7
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc--cCCccccCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG--KIPPSLAKL 152 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g--~~P~~l~~l 152 (158)
+++.|++++|.+.+ +|.. +++|+.|++++|+++ .+|. .+++|++|++++|.+++ .+|..++++
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 45566666666553 3332 345555555555555 3444 24555555555555555 455544443
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.14 E-value=1.4e-06 Score=66.93 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=54.4
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccC-CccCCCCCc-cccCCCCCCEEecccCcccccCCc-cccCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYK-NNIQGTIPV-ELGNLKSLISLDLYNNNISGKIPP-SLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~P~-~l~~l~~L~ 156 (158)
.++.|++++|+++ .+|+......+|+.+++.+ |.+. .+|. .|..+++|++|++++|.++ .+|. .+.++++|+
T Consensus 155 ~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 155 ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR 229 (350)
T ss_dssp SCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEE
T ss_pred hhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhh
Confidence 5778999999998 5666666677889999975 5555 5664 5788999999999999998 5554 466665554
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.11 E-value=1.2e-06 Score=67.56 Aligned_cols=77 Identities=26% Similarity=0.245 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCCCCccch----hhhcCCC-CCCEEeccCCccCCCCCccccCC-----CCCCEEecccCcccccCCcccc
Q 031521 81 NRVTRLDLGNSNLSGRLV----PELGKLE-HLQYLELYKNNIQGTIPVELGNL-----KSLISLDLYNNNISGKIPPSLA 150 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p----~~~~~l~-~L~~L~l~~n~l~g~~p~~~~~l-----~~L~~L~Ls~N~l~g~~P~~l~ 150 (158)
.+++.|++++|.+.+..+ ..+..++ +|+.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999997776 7788888 89999999999998777777665 9999999999999977666443
Q ss_pred C----C-CCCCC
Q 031521 151 K----L-KSLVF 157 (158)
Q Consensus 151 ~----l-~~L~~ 157 (158)
. + ++|++
T Consensus 102 ~~l~~~~~~L~~ 113 (362)
T 3goz_A 102 KTLAAIPFTITV 113 (362)
T ss_dssp HHHHTSCTTCCE
T ss_pred HHHHhCCCCccE
Confidence 3 3 56654
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.97 E-value=6.2e-07 Score=70.69 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=15.7
Q ss_pred CCCEEeccCCccCC----CCCccccCCCCCCEEecccCccc
Q 031521 106 HLQYLELYKNNIQG----TIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 106 ~L~~L~l~~n~l~g----~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
+|+.|++++|.+++ .+|..+..+++|++|++++|.++
T Consensus 371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 44444444444442 33333444444444444444443
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.82 E-value=2.1e-06 Score=67.68 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCCCCcc----chhhhcCCCCCCEEeccCCccCCCCCccccC-----CCCCCEEecccCcccc----cCCc
Q 031521 81 NRVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGTIPVELGN-----LKSLISLDLYNNNISG----KIPP 147 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~-----l~~L~~L~Ls~N~l~g----~~P~ 147 (158)
.+++.|++++|.+.+. ++..+..+++|+.|++++|.+++..+..+.. .++|++|++++|.+++ .+|.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 4899999999999865 5667778899999999999998654544432 6799999999999986 6788
Q ss_pred cccCCCCCCCC
Q 031521 148 SLAKLKSLVFL 158 (158)
Q Consensus 148 ~l~~l~~L~~L 158 (158)
.+..+++|++|
T Consensus 393 ~l~~~~~L~~L 403 (461)
T 1z7x_W 393 TLLANHSLREL 403 (461)
T ss_dssp HHHHCCCCCEE
T ss_pred HHHhCCCccEE
Confidence 88778877653
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=3.6e-06 Score=62.81 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=42.3
Q ss_pred cCCCCCCEEeccCCccCC--CCCccccCCCCCCEEecccCcccccCCccccCCC--CCC
Q 031521 102 GKLEHLQYLELYKNNIQG--TIPVELGNLKSLISLDLYNNNISGKIPPSLAKLK--SLV 156 (158)
Q Consensus 102 ~~l~~L~~L~l~~n~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~--~L~ 156 (158)
.++++|+.|++++|++++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~ 223 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLE 223 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcc
Confidence 458899999999999997 5567778899999999999999964 3344444 444
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=8.4e-05 Score=56.31 Aligned_cols=74 Identities=11% Similarity=-0.026 Sum_probs=40.5
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCC-EEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQ-YLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~-~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
++++|++++| +...-+..|.++.+|+ .+++++ .+...-+..|.++++|+.+++++|.+...-+..|.++++|+.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 3445555544 4433334455555555 555555 444333455666666777777666666333446666666654
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=8.9e-05 Score=56.19 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCC-EEecccCcccccCCccccCCCCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI-SLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~-~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.+++++|+++...+..|..+.+|+.+++++| +...-+..|.++++|+ .+++.+ .++..-+..|.++++|+.
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 56999999999999666677999999999999998 7655566899999999 999988 566344567888887764
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.53 E-value=8.8e-06 Score=66.03 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=41.1
Q ss_pred CEEEEEcCCCCCCcc----chhhhcCCCCCCEEeccCCccCC----CCCccccCCCCCCEEecccCcccccCCccccCCC
Q 031521 82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQG----TIPVELGNLKSLISLDLYNNNISGKIPPSLAKLK 153 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~ 153 (158)
++++|++++|.+.+. ++..+..+++|+.|++++|.+++ .++..+..+++|+.|++++|.+.+ +|..+.+++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence 456666666665443 33334455666666666666652 233334456677777777766653 444454444
Q ss_pred CCC
Q 031521 154 SLV 156 (158)
Q Consensus 154 ~L~ 156 (158)
+|+
T Consensus 244 ~L~ 246 (592)
T 3ogk_B 244 NLE 246 (592)
T ss_dssp TCC
T ss_pred HHH
Confidence 444
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.52 E-value=9.8e-06 Score=63.02 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=5.8
Q ss_pred CCCCCEEecccCcc
Q 031521 128 LKSLISLDLYNNNI 141 (158)
Q Consensus 128 l~~L~~L~Ls~N~l 141 (158)
.++|+.|+|++|.+
T Consensus 210 ~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 210 NRQLQELNVAYNGA 223 (372)
T ss_dssp CSCCCEEECCSSCC
T ss_pred CCCcCeEECCCCCC
Confidence 33444444444443
No 143
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.47 E-value=0.00025 Score=47.00 Aligned_cols=56 Identities=25% Similarity=0.214 Sum_probs=39.5
Q ss_pred EEEcCCCCCC-ccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031521 85 RLDLGNSNLS-GRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 85 ~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
.++.++++++ ..+|..+. .+++.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666777765 34554332 36888888888888544556778888888888888764
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.47 E-value=3e-05 Score=60.28 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=48.6
Q ss_pred CEEEEEcCCCCCCccchhhh-----cCCCCCCEEeccCCccCC----CCCccccCCCCCCEEecccCccccc----CCcc
Q 031521 82 RVTRLDLGNSNLSGRLVPEL-----GKLEHLQYLELYKNNIQG----TIPVELGNLKSLISLDLYNNNISGK----IPPS 148 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~----~P~~ 148 (158)
+++.|++++|.+.+.....+ ...+.|+.|++++|.++. .++..+...++|++|+|++|.++.. ++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 56777777777764433333 245678888888888763 2344456778888888888887642 2344
Q ss_pred ccCCCCCCC
Q 031521 149 LAKLKSLVF 157 (158)
Q Consensus 149 l~~l~~L~~ 157 (158)
+...++|+.
T Consensus 207 L~~~~~L~~ 215 (372)
T 3un9_A 207 LDRNRQLQE 215 (372)
T ss_dssp GGGCSCCCE
T ss_pred HhcCCCcCe
Confidence 444555543
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.41 E-value=3.5e-05 Score=53.93 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=53.4
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCc-cCCCCCccccCC----CCCCEEecccCc-ccccCCccccCCCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN-IQGTIPVELGNL----KSLISLDLYNNN-ISGKIPPSLAKLKS 154 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~l----~~L~~L~Ls~N~-l~g~~P~~l~~l~~ 154 (158)
-++++||++++.++..--..+..+++|+.|+++++. ++..--..+..+ ++|++|+++++. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999887666678889999999999985 653322334443 468999998864 55322234555666
Q ss_pred CCC
Q 031521 155 LVF 157 (158)
Q Consensus 155 L~~ 157 (158)
|++
T Consensus 141 L~~ 143 (176)
T 3e4g_A 141 LKY 143 (176)
T ss_dssp CCE
T ss_pred CCE
Confidence 654
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.20 E-value=5.6e-05 Score=61.23 Aligned_cols=66 Identities=11% Similarity=0.176 Sum_probs=42.5
Q ss_pred CCEEEEEcCCCCCCccchhhhc-CCCCCCEEeccCC-ccCCC-CCccccCCCCCCEEecccCcccccCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKN-NIQGT-IPVELGNLKSLISLDLYNNNISGKIP 146 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n-~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~~P 146 (158)
+++++|++++|.+.+..+..+. .+++|+.|++++| .++.. ++..+..+++|++|++++|.+++..+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~ 173 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch
Confidence 4577888888877766666664 4677777777777 34321 33334467777777777777655433
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.20 E-value=0.00013 Score=59.11 Aligned_cols=64 Identities=23% Similarity=0.109 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCCCCcc-chhhhcCCCCCCEEeccCCccCCC-CCccccCCCCCCEEecccCccccc
Q 031521 81 NRVTRLDLGNSNLSGR-LVPELGKLEHLQYLELYKNNIQGT-IPVELGNLKSLISLDLYNNNISGK 144 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~ 144 (158)
++++.|++++|++++. ++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.++..
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 4588889998888763 455567788999999999987654 344456788899999999988754
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.19 E-value=8.1e-05 Score=52.11 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCCCCcc----chhhhcCCCCCCEEeccCCccCCC----CCccccCCCCCCEEec--ccCcccc
Q 031521 80 DNRVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDL--YNNNISG 143 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~L--s~N~l~g 143 (158)
..++++|+|++|.+... +...+...+.|+.|++++|.++.. +...+...+.|++|++ ++|.+..
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 35678888888887643 234445557788888888888743 3445666778888888 7787764
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.11 E-value=3.8e-05 Score=62.22 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=33.3
Q ss_pred CEEEEEcCCCCCCccchhhhcC-CCCCCEEeccCCccCCCCCccc-cCCCCCCEEecccCcccc
Q 031521 82 RVTRLDLGNSNLSGRLVPELGK-LEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNISG 143 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~g~~p~~~-~~l~~L~~L~Ls~N~l~g 143 (158)
+++.|++++ .+.+..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 455555554 444444444443 5666666666666654333333 446666666666666643
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.07 E-value=8.4e-05 Score=52.03 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=26.4
Q ss_pred CEEEEEcCCCCCCcc----chhhhcCCCCCCEEec--cCCccCCC----CCccccCCCCCCEEecccCcc
Q 031521 82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLEL--YKNNIQGT----IPVELGNLKSLISLDLYNNNI 141 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l--~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l 141 (158)
.+++|+|++|.+.+. +...+...+.|+.|++ ++|.++.. +...+...+.|++|++++|.+
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 345555555555432 2233344444555555 44554422 112223334555555555544
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.07 E-value=0.00066 Score=52.57 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=28.4
Q ss_pred CCCCCCEEeccCCccCCCCCccc---cCCCCCCEEecccCcccc
Q 031521 103 KLEHLQYLELYKNNIQGTIPVEL---GNLKSLISLDLYNNNISG 143 (158)
Q Consensus 103 ~l~~L~~L~l~~n~l~g~~p~~~---~~l~~L~~L~Ls~N~l~g 143 (158)
.+++|+.|++.+|.+....+..+ ..+++|++|+|+.|.+.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 46788888888887764333222 246788888888888765
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.51 E-value=0.012 Score=38.72 Aligned_cols=39 Identities=26% Similarity=0.123 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCC
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG 119 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g 119 (158)
.+++.|+|++|.|+...+..|..+++|+.|+|++|.+..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 368999999999996666778889999999999998763
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.69 E-value=0.035 Score=43.33 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=21.7
Q ss_pred hhhhcCCCCCCEEeccCCccC-----CCCCccccCCCCCCEEecc
Q 031521 98 VPELGKLEHLQYLELYKNNIQ-----GTIPVELGNLKSLISLDLY 137 (158)
Q Consensus 98 p~~~~~l~~L~~L~l~~n~l~-----g~~p~~~~~l~~L~~L~Ls 137 (158)
...|..+.+|+.+++.+|.+. ..-+..|.++++|+.+++.
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 445556666666666655543 1223345555666666555
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.41 E-value=0.072 Score=41.54 Aligned_cols=71 Identities=13% Similarity=0.002 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
++++.+.. .+...-...|..+.+|+.++++.|.+...-...|. ..+|+.+.+..+ +...-...|.++++|+
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~ 229 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLK 229 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCC
Confidence 55555553 44433344566666677777766666522222233 455555555533 3312222344444443
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=93.83 E-value=0.052 Score=41.84 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCcccc--CCCCCCEEecc
Q 031521 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELG--NLKSLISLDLY 137 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~--~l~~L~~L~Ls 137 (158)
+++++|++++|.-. .+++ + .+++|+.|++..+.+.......+. .+++|+.|+|+
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 56777888776311 2232 3 367788888877766533222333 67889998885
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=93.61 E-value=0.013 Score=40.83 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCC-CCccchhhhcCC----CCCCEEeccCCc-cCCCCCccccCCCCCCEEecccCc
Q 031521 81 NRVTRLDLGNSN-LSGRLVPELGKL----EHLQYLELYKNN-IQGTIPVELGNLKSLISLDLYNNN 140 (158)
Q Consensus 81 ~~l~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~g~~p~~~~~l~~L~~L~Ls~N~ 140 (158)
.+++.|+|+++. +++.--..+..+ ++|+.|+++++. ++..--..+..+++|++|++++..
T Consensus 85 ~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 579999999985 776555666665 479999999985 764333456789999999999864
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.01 E-value=0.076 Score=37.55 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCCCCccc----hhhhcCCCCCCEEeccCCccCCC----CCccccCCCCCCEEecccC
Q 031521 81 NRVTRLDLGNSNLSGRL----VPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNN 139 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N 139 (158)
..++.|+|++|.+.+.- ...+..=+.|+.|+|++|+++.. +-..+..-+.|++|+|++|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 45777777777776432 23333445677777777777632 1223444466777777654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.27 E-value=0.35 Score=36.76 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=32.8
Q ss_pred hhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCC-ccccCCCCCC
Q 031521 99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP-PSLAKLKSLV 156 (158)
Q Consensus 99 ~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P-~~l~~l~~L~ 156 (158)
..|..+.+|+.+.+.++.+...-...|.++.+|+.+++..+ ++ .+. ..|.++++|+
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALS 336 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCC
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCC
Confidence 34556677777777766665333456677777777777544 33 222 3455555554
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.76 E-value=0.25 Score=37.99 Aligned_cols=56 Identities=9% Similarity=0.004 Sum_probs=26.8
Q ss_pred hhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031521 99 PELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 99 ~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
..|..+.+|+.+++..+ +...-..+|.++++|+.+++..| ++..-...|.++.+|+
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 34555566666666433 33222345555666666665544 3311122455555544
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.15 E-value=0.15 Score=39.28 Aligned_cols=72 Identities=7% Similarity=0.027 Sum_probs=50.8
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.+++..+ ++..-...|.++.+|+.+.+..+ +...-..+|.++++|+.+++..+- + .+...+.++++|+.
T Consensus 321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence 4666666533 44333567888999999999877 553445689999999999998653 3 33456778777754
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.78 E-value=0.2 Score=35.35 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=38.5
Q ss_pred CCCEEEEEcCCC-CCCcc----chhhhcCCCCCCEEeccCCccCCC----CCccccCCCCCCEEecccCcccc
Q 031521 80 DNRVTRLDLGNS-NLSGR----LVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNISG 143 (158)
Q Consensus 80 ~~~l~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g 143 (158)
...+++|+|++| .+... +...+..=+.|+.|++++|++... +-..+..-+.|++|+|++|.+..
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 345777777774 65532 334455556777778877777632 12223334677777787777753
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.77 E-value=0.75 Score=35.24 Aligned_cols=54 Identities=13% Similarity=0.256 Sum_probs=25.5
Q ss_pred hhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCC-ccccCCCCCC
Q 031521 100 ELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP-PSLAKLKSLV 156 (158)
Q Consensus 100 ~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P-~~l~~l~~L~ 156 (158)
.|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++ .+. ..|.++++|+
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALN 360 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCC
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCC
Confidence 4445555666655543 22122334555566666655433 33 222 2455555554
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.30 E-value=0.73 Score=35.32 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=43.1
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
++++++|..+ ++..-...|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++...
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 4667777643 44333567888999999999765 55344568999999999999887543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.45 E-value=0.87 Score=34.52 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=43.9
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccC
Q 031521 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N 139 (158)
.++.+.+.++.++..-...|.++.+|+.+.+..+ +...-..+|.++++|+.+.+..+
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 5788888888887555677889999999999865 44333457899999999888654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.75 E-value=18 Score=22.06 Aligned_cols=40 Identities=10% Similarity=-0.079 Sum_probs=23.5
Q ss_pred hhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEeccc
Q 031521 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138 (158)
Q Consensus 98 p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~ 138 (158)
...|.++.+|+.+.+..+- +..-...|.++.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 3456666677777666542 213344566777777766654
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=20.28 E-value=38 Score=14.43 Aligned_cols=9 Identities=22% Similarity=0.962 Sum_probs=6.4
Q ss_pred CCCccccee
Q 031521 68 NPCTWFHIT 76 (158)
Q Consensus 68 ~~c~~~gv~ 76 (158)
..|+|.|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 468888753
Done!