BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031522
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1D9U|A Chain A, Bacteriophage Lambda Lysozyme Complexed With A
           Chitohexasacharide
 pdb|1D9U|B Chain B, Bacteriophage Lambda Lysozyme Complexed With A
           Chitohexasacharide
 pdb|3D3D|A Chain A, Bacteriophage Lambda Lysozyme Complexed With A
           Chitohexasaccharide
 pdb|3D3D|B Chain B, Bacteriophage Lambda Lysozyme Complexed With A
           Chitohexasaccharide
          Length = 154

 Score = 29.3 bits (64), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 7/41 (17%)

Query: 87  LTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDY-QHP 126
           L W E  DNG+Q TRN  +  +V   L+      TDY  HP
Sbjct: 15  LAWSEGTDNGRQKTRNHGYDVIVGGELF------TDYSDHP 49


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.481 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,109,405
Number of Sequences: 62578
Number of extensions: 205002
Number of successful extensions: 447
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 6
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)