Query 031522
Match_columns 158
No_of_seqs 113 out of 139
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 15:18:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3319 Predicted membrane pro 100.0 5.6E-82 1.2E-86 499.0 10.8 153 5-157 1-153 (153)
2 PF04061 ORMDL: ORMDL family ; 100.0 2.4E-77 5.2E-82 467.3 10.1 135 16-150 1-136 (136)
3 COG5081 Predicted membrane pro 100.0 6.2E-66 1.3E-70 412.8 6.5 146 10-156 27-172 (180)
4 KOG4463 Uncharacterized conser 41.0 10 0.00023 33.9 0.4 50 107-157 102-152 (323)
5 PHA02291 hypothetical protein 27.7 60 0.0013 25.6 2.6 16 24-39 2-17 (132)
6 PRK13693 (3R)-hydroxyacyl-ACP 14.9 1.7E+02 0.0037 22.3 2.7 33 86-118 2-34 (142)
7 PF12273 RCR: Chitin synthesis 13.8 1.3E+02 0.0028 22.7 1.8 15 28-42 2-16 (130)
8 PF04120 Iron_permease: Low af 13.6 1.7E+02 0.0037 23.0 2.5 53 20-75 10-63 (132)
9 COG4327 Predicted membrane pro 12.9 88 0.0019 24.0 0.6 22 17-38 51-72 (101)
10 PF06736 DUF1211: Protein of u 11.7 1.3E+02 0.0028 21.4 1.2 25 117-141 67-92 (92)
No 1
>KOG3319 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=5.6e-82 Score=499.03 Aligned_cols=153 Identities=54% Similarity=0.956 Sum_probs=150.7
Q ss_pred hhhhcCCCCCCCCCcceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhhhhHHHHhHhhheeeeecCcCCCCCcccc
Q 031522 5 LYVKATPPADLNRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPFAEDQGIY 84 (158)
Q Consensus 5 ~~~~~~~~~~~N~N~~W~~~~G~W~~yiv~i~l~~l~~l~ip~~s~~~sWTltn~~h~~~ty~~fHwvKGtPF~~~qG~y 84 (158)
++.++++++|+|+|++|++|||+|++|+++|+++|++++|+||+|.+++|||||++|+++||+||||+|||||++|||+|
T Consensus 1 m~~~~~~~~~~N~Nt~w~~~rG~Wl~yil~i~ll~l~~ls~p~~s~~~aWTltnl~h~~~tyi~fH~vkGtPF~~d~g~y 80 (153)
T KOG3319|consen 1 MMDVADQHSDVNPNTRWVNQRGAWLIYILIILLLHLVLLSIPFVSPPWAWTLTNLIHNIGTYIFFHWVKGTPFEDDQGAY 80 (153)
T ss_pred CCccccCcCcCCCCceeeecCchHHHHHHHHHHHHHHHHhCccCCcchhHHHHHHHHHHhHheeEEEecCCCCcCCCcHh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecCCCCCCccceeehhhhHHHHHHhhcccCCCCchhhhHHHHhhhhhhcCCCccceeeeecccCC
Q 031522 85 NGLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGINAD 157 (158)
Q Consensus 85 ~~LT~WEQID~g~q~T~trKFL~~vPIvLFllsthyt~yd~~~f~iN~~~l~~vviPKLP~~HrvRifGINk~ 157 (158)
|+||||||||+|.||||+||||+++||+||++||||||||..+|++|++|+++|++||||+||||||||||||
T Consensus 81 ~~lT~WEQid~g~q~T~~RKFLtivPIvLfl~~s~yt~y~~~~F~~N~~sl~~v~iPKlp~~H~vRIfgIn~~ 153 (153)
T KOG3319|consen 81 RLLTHWEQIDDGVQYTPSRKFLTIVPIVLFLLASHYTKYDHPLFLLNTLSLFVVVIPKLPQMHGVRIFGINKY 153 (153)
T ss_pred hhccHHHHhccccccccchhhhhHHHHHHHHHHHHhhccCcchhHHHHHHHHhhhhccccccceEEEecccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF04061 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 belongs to a novel gene family comprising three genes in humans (ORMDL1, ORMDL2 and ORMDL3), and homologs in yeast, microsporidia, plants, Drosophila, urochordates and vertebrates. ORMDLs are involved in protein folding in the endoplasmic reticulum. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.4e-77 Score=467.29 Aligned_cols=135 Identities=53% Similarity=0.967 Sum_probs=134.1
Q ss_pred CCCcceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhhhhHHHHhHhhheeeeecCcCCCC-CccccCCCcceeeec
Q 031522 16 NRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPFAE-DQGIYNGLTWWEQID 94 (158)
Q Consensus 16 N~N~~W~~~~G~W~~yiv~i~l~~l~~l~ip~~s~~~sWTltn~~h~~~ty~~fHwvKGtPF~~-~qG~y~~LT~WEQID 94 (158)
|||++|+|+||+|++|+++|+++|++++++||+|+++|||+||++|+++||+||||+||+||++ |||+||+||+|||||
T Consensus 1 N~N~~W~~~~g~W~~yi~li~~~~l~~~~ip~~s~~~~WTltn~~h~~~ty~~fHwvKGtPf~~~~qG~y~~LT~WEQID 80 (136)
T PF04061_consen 1 NPNANWVNSRGAWLIYIVLILLLKLILLSIPGFSQEWAWTLTNLIHNIITYIFFHWVKGTPFEFMDQGAYDNLTMWEQID 80 (136)
T ss_pred CCCchhccCccHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhheeeecCCCCCCCCCcccccCcHHHhcc
Confidence 8999999999999999999999999999999999999999999999999999999999999977 999999999999999
Q ss_pred CCCCCCccceeehhhhHHHHHHhhcccCCCCchhhhHHHHhhhhhhcCCCccceee
Q 031522 95 NGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVR 150 (158)
Q Consensus 95 ~g~q~T~trKFL~~vPIvLFllsthyt~yd~~~f~iN~~~l~~vviPKLP~~HrvR 150 (158)
+|+||||+||||++|||+|||+||||||||+.+|.+|++++++|++||||+|||||
T Consensus 81 ~g~q~TptrKFL~~vPivLfllas~yt~y~~~~f~iN~~~l~~vvipKLP~~H~vR 136 (136)
T PF04061_consen 81 DGAQYTPTRKFLTIVPIVLFLLASHYTHYDPQHFFINFIALLVVVIPKLPFMHRVR 136 (136)
T ss_pred cCCcCCcceeeeehhHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhcCCchhccCC
Confidence 99999999999999999999999999999999999999999999999999999999
No 3
>COG5081 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=6.2e-66 Score=412.77 Aligned_cols=146 Identities=30% Similarity=0.603 Sum_probs=141.4
Q ss_pred CCCCCCCCCcceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhhhhHHHHhHhhheeeeecCcCCCCCccccCCCcc
Q 031522 10 TPPADLNRNTEWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWTIVNLAHFLITYHFFHWKKGTPFAEDQGIYNGLTW 89 (158)
Q Consensus 10 ~~~~~~N~N~~W~~~~G~W~~yiv~i~l~~l~~l~ip~~s~~~sWTltn~~h~~~ty~~fHwvKGtPF~~~qG~y~~LT~ 89 (158)
+..+++|.|++|++|||+|++|+++|+++|+++..+ |++.|++|||||++|+++||+||||+||+||++|+|+||+|||
T Consensus 27 dq~~~~n~Na~Wv~qrGaWiIHvvvI~lLkl~~s~~-~~t~el~WtLtnmtY~igsfImFH~i~GtPFdfnggaYd~lTm 105 (180)
T COG5081 27 DQQVLPNMNATWVDQRGAWIIHVVVILLLKLFYSLF-GVTDELGWTLTNMTYNIGSFIMFHLIKGTPFDFNGGAYDNLTM 105 (180)
T ss_pred hhcccccccchhhhccCceehHHHHHHHHHHHHHHh-cCCchhhhhhHHHHHHhhhheeEEeecCCCcccCCchhhhhhH
Confidence 566779999999999999999999999999997766 8999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCCccceeehhhhHHHHHHhhcccCCCCchhhhHHHHhhhhhhcCCCccceeeeecccC
Q 031522 90 WEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGINA 156 (158)
Q Consensus 90 WEQID~g~q~T~trKFL~~vPIvLFllsthyt~yd~~~f~iN~~~l~~vviPKLP~~HrvRifGINk 156 (158)
|||+|+|.||||+||||.++||+||++++||+|||..+|.+|+.+++.|++||||++||+||+||.+
T Consensus 106 WEQl~e~~~yTP~rkfll~~PiilFl~sn~y~~~n~~lF~~ni~~lf~v~iPKlg~~Hr~RI~~i~~ 172 (180)
T COG5081 106 WEQLDEETLYTPDRKFLLLVPIILFLASNHYVHYNIFLFLINITSLFLVVIPKLGFTHRLRISIIPG 172 (180)
T ss_pred HHHhccccccCcchhHHHHHHHHHHHHHhhheeehhhhHHHHHHHHHhhhccccchhhhhhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998765
No 4
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.98 E-value=10 Score=33.90 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=35.4
Q ss_pred hhhhHHHHHHhhcccCCCC-chhhhHHHHhhhhhhcCCCccceeeeecccCC
Q 031522 107 TVVPVVLYLIASHTTDYQH-PMLFFNTLAVFVLVVAKFPNMHKVRIFGINAD 157 (158)
Q Consensus 107 ~~vPIvLFllsthyt~yd~-~~f~iN~~~l~~vviPKLP~~HrvRifGINk~ 157 (158)
.+.||.++|......+|+. +..-+|+.+..- .-=-+|..|++|+||+|-|
T Consensus 102 l~~~il~~l~~~~~~nl~~~qp~~liFa~~~~-~y~~ip~~~f~r~f~~~f~ 152 (323)
T KOG4463|consen 102 LLEVILLSLLKDTTANLLTSQPYGLIFASFIP-FYLDIPVSTFFRVFGVNFS 152 (323)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCceeeeeccc-eEEEecceeEEEeeccccc
Confidence 4579999999999888873 344456655421 1113679999999999976
No 5
>PHA02291 hypothetical protein
Probab=27.69 E-value=60 Score=25.63 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=12.9
Q ss_pred CCchhhhHHHHHHHHH
Q 031522 24 YPGVWTTYILILFFAW 39 (158)
Q Consensus 24 ~~G~W~~yiv~i~l~~ 39 (158)
|+-+|++|+++++++-
T Consensus 2 S~K~~iFYiL~~~VL~ 17 (132)
T PHA02291 2 SRKASIFYILVVIVLA 17 (132)
T ss_pred CcchhhHHHHHHHHHH
Confidence 6779999999887643
No 6
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=14.87 E-value=1.7e+02 Score=22.30 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=26.8
Q ss_pred CCcceeeecCCCCCCccceeehhhhHHHHHHhh
Q 031522 86 GLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIAS 118 (158)
Q Consensus 86 ~LT~WEQID~g~q~T~trKFL~~vPIvLFllst 118 (158)
.|..||++.-|+.+.+.++-++--=|.+|-.+|
T Consensus 2 ~~~~~ed~~vG~~~~~~~~tvt~~di~~FA~~s 34 (142)
T PRK13693 2 ALREFSSVKVGDQLPEKTYPLTRQDLVNYAGVS 34 (142)
T ss_pred CcccHhHcCCCCCcCccceeeCHHHHHHHHHHh
Confidence 367799999999996555568888888888887
No 7
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=13.83 E-value=1.3e+02 Score=22.70 Aligned_cols=15 Identities=20% Similarity=0.665 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHHH
Q 031522 28 WTTYILILFFAWLIV 42 (158)
Q Consensus 28 W~~yiv~i~l~~l~~ 42 (158)
|++.+++|+++-+++
T Consensus 2 W~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 2 WVLFAIIIVAILLFL 16 (130)
T ss_pred eeeHHHHHHHHHHHH
Confidence 555555555444443
No 8
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=13.63 E-value=1.7e+02 Score=23.05 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=32.2
Q ss_pred ceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchh-hhhHHHHhHhhheeeeecCc
Q 031522 20 EWFTYPGVWTTYILILFFAWLIVLSVFGCSPGMAWT-IVNLAHFLITYHFFHWKKGT 75 (158)
Q Consensus 20 ~W~~~~G~W~~yiv~i~l~~l~~l~ip~~s~~~sWT-ltn~~h~~~ty~~fHwvKGt 75 (158)
.|..++.+-++.+++|+ ++++.- |.+.-...|+ +.|..=.++||.|.=-+.++
T Consensus 10 ~~~gs~~~f~~~~~~Ii-~W~i~G--p~~~~sdtWQLviNt~ttIitFlmvfLIQn~ 63 (132)
T PF04120_consen 10 DVAGSPWAFVIAVAVII-VWAISG--PVFGFSDTWQLVINTATTIITFLMVFLIQNT 63 (132)
T ss_pred HHHCCHHHHHHHHHHHH-HHHHHh--ccccCcchHHHHHccHHHHHHHHHHHHHHhh
Confidence 45556666666666655 344433 4344444555 45888888999887665554
No 9
>COG4327 Predicted membrane protein [Function unknown]
Probab=12.86 E-value=88 Score=23.98 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=18.6
Q ss_pred CCcceecCCchhhhHHHHHHHH
Q 031522 17 RNTEWFTYPGVWTTYILILFFA 38 (158)
Q Consensus 17 ~N~~W~~~~G~W~~yiv~i~l~ 38 (158)
|=.-||.+.|+=++|+++|++-
T Consensus 51 pf~ywma~QGsiitfVvlifvy 72 (101)
T COG4327 51 PFGYWMAQQGSIITFVVLIFVY 72 (101)
T ss_pred chhhhhhcCCCeeehHHHHHHH
Confidence 4457999999999999999853
No 10
>PF06736 DUF1211: Protein of unknown function (DUF1211); InterPro: IPR010617 This family represents a conserved region within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. These may possibly be integral membrane proteins.
Probab=11.68 E-value=1.3e+02 Score=21.40 Aligned_cols=25 Identities=16% Similarity=0.467 Sum_probs=19.3
Q ss_pred hhcccCCCCchhhhHHHHhhhh-hhc
Q 031522 117 ASHTTDYQHPMLFFNTLAVFVL-VVA 141 (158)
Q Consensus 117 sthyt~yd~~~f~iN~~~l~~v-viP 141 (158)
-.++.+.|.....+|+..++.+ ++|
T Consensus 67 f~~i~~~d~~~~~ln~~~L~~i~liP 92 (92)
T PF06736_consen 67 FRHIKKVDRRIIWLNLLFLFFISLIP 92 (92)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHhhCC
Confidence 3457788999999999988655 655
Done!