Query 031522
Match_columns 158
No_of_seqs 113 out of 139
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 00:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9p_A Pheromone alpha factor 44.6 17 0.00058 25.4 2.9 27 111-140 37-63 (80)
2 2lpd_A Uncharacterized protein 23.4 25 0.00085 25.6 0.9 23 74-101 17-39 (95)
3 2khr_A Protein MBTH; sideropho 18.4 36 0.0012 23.5 0.8 21 75-100 7-27 (74)
4 2pst_X Hypothetical protein PA 14.7 32 0.0011 23.8 -0.2 21 75-100 5-25 (74)
5 1yfn_E Sigma-E factor negative 13.1 28 0.00097 20.7 -0.7 10 142-151 11-20 (32)
6 1dzl_A Late major capsid prote 10.8 1E+02 0.0034 28.3 1.7 35 72-107 429-470 (505)
7 3iyj_F Major capsid protein L1 10.7 86 0.003 28.7 1.2 28 79-107 433-467 (495)
8 3oae_A Late major capsid prote 10.6 67 0.0023 28.9 0.5 25 82-107 393-424 (428)
9 3gnz_P 25 kDa protein elicitor 10.0 51 0.0017 26.7 -0.5 19 78-96 164-182 (213)
10 2hx6_A Ribonuclease, GP61.9; a 9.0 93 0.0032 24.3 0.7 14 91-104 91-104 (153)
No 1
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=44.59 E-value=17 Score=25.39 Aligned_cols=27 Identities=15% Similarity=0.673 Sum_probs=20.7
Q ss_pred HHHHHHhhcccCCCCchhhhHHHHhhhhhh
Q 031522 111 VVLYLIASHTTDYQHPMLFFNTLAVFVLVV 140 (158)
Q Consensus 111 IvLFllsthyt~yd~~~f~iN~~~l~~vvi 140 (158)
++|++++. +-....|++|.+++++.++
T Consensus 37 iil~lltk---krrspiF~lN~~~L~l~ii 63 (80)
T 2k9p_A 37 IVVWITSR---SRKTPIFIINQVSLFLIIL 63 (80)
T ss_dssp HHHHHHTC---CSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---cccChhhHHHHHHHHHHHH
Confidence 56666665 6778889999999887654
No 2
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=23.42 E-value=25 Score=25.60 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=16.5
Q ss_pred CcCCCCCccccCCCcceeeecCCCCCCc
Q 031522 74 GTPFAEDQGIYNGLTWWEQIDNGQQLTR 101 (158)
Q Consensus 74 GtPF~~~qG~y~~LT~WEQID~g~q~T~ 101 (158)
-.||++++|.|.- -++++.||+-
T Consensus 17 ~~PFDd~~~~f~V-----LvN~E~QYSL 39 (95)
T 2lpd_A 17 QGPGSMDDELYFV-----VRNNEGQYSV 39 (95)
T ss_dssp SCSCSSCCCCEEE-----EECSSCSCEE
T ss_pred cCCCcCCCCcEEE-----EEcCCCcccc
Confidence 3699887776554 4788888873
No 3
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=18.39 E-value=36 Score=23.54 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=15.6
Q ss_pred cCCCCCccccCCCcceeeecCCCCCC
Q 031522 75 TPFAEDQGIYNGLTWWEQIDNGQQLT 100 (158)
Q Consensus 75 tPF~~~qG~y~~LT~WEQID~g~q~T 100 (158)
.||+.++|.|.- -++++.||+
T Consensus 7 npfdd~~~~f~V-----lvN~E~QyS 27 (74)
T 2khr_A 7 NPFDDDNGAFFV-----LVNDEDQHS 27 (74)
T ss_dssp CCCSCCCSCEEE-----EEETTCSCE
T ss_pred CCCCCCCCeEEE-----EEcCCCccc
Confidence 799877776654 478888886
No 4
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=14.73 E-value=32 Score=23.82 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=11.4
Q ss_pred cCCCCCccccCCCcceeeecCCCCCC
Q 031522 75 TPFAEDQGIYNGLTWWEQIDNGQQLT 100 (158)
Q Consensus 75 tPF~~~qG~y~~LT~WEQID~g~q~T 100 (158)
.||+.++|.|.- -++++.||+
T Consensus 5 npfdd~~~~f~V-----lvN~E~QyS 25 (74)
T 2pst_X 5 SVFDRDDIQFQV-----VVNHEEQYS 25 (74)
T ss_dssp -----CCSCEEE-----EEETTCCEE
T ss_pred CCCcCCCCeEEE-----EEcCCCccc
Confidence 799877776654 478888886
No 5
>1yfn_E Sigma-E factor negative regulatory protein; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli}
Probab=13.12 E-value=28 Score=20.68 Aligned_cols=10 Identities=50% Similarity=0.607 Sum_probs=8.4
Q ss_pred CCCccceeee
Q 031522 142 KFPNMHKVRI 151 (158)
Q Consensus 142 KLP~~HrvRi 151 (158)
|+|+.|+||=
T Consensus 11 ~~pfw~kvrp 20 (32)
T 1yfn_E 11 KMPFWQKVRP 20 (32)
T ss_pred hChHHHHhhH
Confidence 6899999983
No 6
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human papillomavirus type 16} SCOP: b.121.6.1
Probab=10.85 E-value=1e+02 Score=28.32 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=24.2
Q ss_pred ecCcCCCCCccccCCCcceeeecCC-------CCCCccceeeh
Q 031522 72 KKGTPFAEDQGIYNGLTWWEQIDNG-------QQLTRNRKFLT 107 (158)
Q Consensus 72 vKGtPF~~~qG~y~~LT~WEQID~g-------~q~T~trKFL~ 107 (158)
.|..|=.....-|..++|||- |=. +||.=.||||.
T Consensus 429 p~~~pp~ek~DPy~~~~FW~V-DL~ek~S~dLdQfpLGRkFL~ 470 (505)
T 1dzl_A 429 QKHTPPAPKEDPLKKYTFWEV-NLKEKFSADLDQFPLGRKFLL 470 (505)
T ss_dssp SCCCCCCCCCCTTTTSCCEEE-ECTTCCBSCGGGSHHHHHHHH
T ss_pred CCCCCCCCCCCccccceeecc-cccccccccccccchHHHHHH
Confidence 455565556678999999983 433 45556899975
No 7
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single cryo-EM, high resolution, late protein, VIR virus; 4.20A {Bovine papillomavirus type 1}
Probab=10.66 E-value=86 Score=28.66 Aligned_cols=28 Identities=32% Similarity=0.749 Sum_probs=19.6
Q ss_pred CCccccCCCcceeeecCCC-------CCCccceeeh
Q 031522 79 EDQGIYNGLTWWEQIDNGQ-------QLTRNRKFLT 107 (158)
Q Consensus 79 ~~qG~y~~LT~WEQID~g~-------q~T~trKFL~ 107 (158)
....-|..++||| +|=.+ ||.=.||||.
T Consensus 433 ek~DPy~~~~FW~-VDL~ek~S~dLdQ~pLGRkFL~ 467 (495)
T 3iyj_F 433 AKEDPYAGFKFWN-IDLKEKLSLDLDQFPLGRRFLA 467 (495)
T ss_dssp SCCCGGGSSCCEE-EECSSSCBSCTTTSHHHHHHHH
T ss_pred CCCCccccceeee-eecchhhhhhccccchhhhHHh
Confidence 4446799999998 44443 5555899874
No 8
>3oae_A Late major capsid protein L1; jelly roll, receptor HSPG, virus capsid, VIR protein; HET: JHM IDS; 2.80A {Human papillomavirus} PDB: 2r5h_A 2r5j_A 2r5k_A
Probab=10.60 E-value=67 Score=28.89 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=17.1
Q ss_pred cccCCCcceeeecCCC-------CCCccceeeh
Q 031522 82 GIYNGLTWWEQIDNGQ-------QLTRNRKFLT 107 (158)
Q Consensus 82 G~y~~LT~WEQID~g~-------q~T~trKFL~ 107 (158)
.-|..++||| +|=.+ ||.=.||||.
T Consensus 393 DPy~~~~FW~-VdL~ekfS~dLdQ~pLGRkFL~ 424 (428)
T 3oae_A 393 DPLKKYTFWE-VNLKEKFSADLDQFPLGRKFLL 424 (428)
T ss_dssp CTTTTSCCEE-EECTTTCBSCGGGSHHHHHHHH
T ss_pred Cccccceeee-eecchhhhhcccCccchhhhhh
Confidence 3588999998 44444 4555788874
No 9
>3gnz_P 25 kDa protein elicitor; toxin, necrosi, ethyleneinducing, immunityassociated responses, plants; 1.35A {Pythium aphanidermatum} PDB: 3gnu_P
Probab=10.01 E-value=51 Score=26.74 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=15.7
Q ss_pred CCCccccCCCcceeeecCC
Q 031522 78 AEDQGIYNGLTWWEQIDNG 96 (158)
Q Consensus 78 ~~~qG~y~~LT~WEQID~g 96 (158)
+...|++..|-+|||+-++
T Consensus 164 t~~~G~~q~LI~Weql~~~ 182 (213)
T 3gnz_P 164 TTSAGKQQPLIQWEQMTQA 182 (213)
T ss_dssp CSSCCBCCCEEEGGGSCHH
T ss_pred cCCCCCccCeeecccCCHH
Confidence 4567999999999998753
No 10
>2hx6_A Ribonuclease, GP61.9; alpha/beta fold, hydrolase; NMR {Enterobacteria phage T4}
Probab=8.99 E-value=93 Score=24.29 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=12.4
Q ss_pred eeecCCCCCCccce
Q 031522 91 EQIDNGQQLTRNRK 104 (158)
Q Consensus 91 EQID~g~q~T~trK 104 (158)
||+|+|.+|-|.|-
T Consensus 91 ~~~~~~veyRP~RL 104 (153)
T 2hx6_A 91 EDFIDGVEYRPGRL 104 (153)
T ss_dssp SSCCSSCSSCCSEE
T ss_pred hhhCccccccccee
Confidence 78999999999884
Done!