Query 031522
Match_columns 158
No_of_seqs 113 out of 139
Neff 4.0
Searched_HMMs 13730
Date Tue Mar 26 00:47:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031522.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031522hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dzla_ b.121.6.1 (A:) Papillo 14.7 31 0.0023 29.1 1.7 34 73-107 411-451 (455)
2 d1rutx4 g.39.1.3 (X:114-146) L 11.5 20 0.0014 20.0 -0.4 9 69-77 15-23 (33)
3 d2dloa2 g.39.1.3 (A:43-75) Thy 6.9 52 0.0038 18.3 0.2 9 72-80 9-17 (33)
4 d2b3na1 d.38.1.4 (A:6-159) Hyp 6.7 33 0.0024 23.4 -0.9 36 89-127 27-62 (154)
5 d1xkpc1 d.198.1.1 (C:2-127) Ch 6.6 66 0.0048 22.6 0.7 11 75-85 14-25 (126)
6 d3cx5i1 f.23.14.1 (I:4-58) Sub 6.5 28 0.0021 21.3 -1.2 14 88-101 35-48 (55)
7 d1nbwb_ c.51.3.2 (B:) Glycerol 6.3 1.2E+02 0.0086 20.6 1.9 19 55-78 92-110 (113)
8 d1ppjw_ f.23.14.1 (W:) Subunit 6.1 31 0.0023 21.6 -1.2 13 88-100 41-53 (62)
9 d3b45a1 f.51.1.1 (A:91-270) Gl 5.7 1.1E+02 0.0083 20.5 1.6 24 115-138 48-71 (180)
10 d2nr9a1 f.51.1.1 (A:4-192) Glp 5.4 1.4E+02 0.01 20.3 2.0 23 115-137 50-72 (189)
No 1
>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=14.66 E-value=31 Score=29.12 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=22.9
Q ss_pred cCcCCCCCccccCCCcceeeecCCC-------CCCccceeeh
Q 031522 73 KGTPFAEDQGIYNGLTWWEQIDNGQ-------QLTRNRKFLT 107 (158)
Q Consensus 73 KGtPF~~~qG~y~~LT~WEQID~g~-------q~T~trKFL~ 107 (158)
+..|=...+.-|..++||| +|=.+ ||.=.||||.
T Consensus 411 ~~~pp~ek~DPy~~~~FW~-VDL~er~S~dLdQfpLGRkFL~ 451 (455)
T d1dzla_ 411 KHTPPAPKEDPLKKYTFWE-VNLKEKFSADLDQFPLGRKFLL 451 (455)
T ss_dssp CCCCCCCCCCTTTTSCCEE-EECTTCCBSCGGGSHHHHHHHH
T ss_pred CCCCCCCCCCCccCCceee-eccchhcccccccCchhhhhhh
Confidence 4444445567899999998 44433 5555899875
No 2
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.49 E-value=20 Score=20.04 Aligned_cols=9 Identities=44% Similarity=1.058 Sum_probs=8.5
Q ss_pred eeeecCcCC
Q 031522 69 FHWKKGTPF 77 (158)
Q Consensus 69 fHwvKGtPF 77 (158)
||++.|+-|
T Consensus 15 FHyvNG~lf 23 (33)
T d1rutx4 15 FHYINGSLF 23 (33)
T ss_dssp EEEETTEEE
T ss_pred eEEecCEEE
Confidence 899999999
No 3
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.86 E-value=52 Score=18.25 Aligned_cols=9 Identities=44% Similarity=0.829 Sum_probs=6.4
Q ss_pred ecCcCCCCC
Q 031522 72 KKGTPFAED 80 (158)
Q Consensus 72 vKGtPF~~~ 80 (158)
..|.||+-|
T Consensus 9 LDGvPFtvD 17 (33)
T d2dloa2 9 LDGIPFTVD 17 (33)
T ss_dssp CTTSCEECC
T ss_pred cCCCcEEEc
Confidence 479999543
No 4
>d2b3na1 d.38.1.4 (A:6-159) Hypothetical protein AF1124 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.71 E-value=33 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=27.3
Q ss_pred ceeeecCCCCCCccceeehhhhHHHHHHhhcccCCCCch
Q 031522 89 WWEQIDNGQQLTRNRKFLTVVPVVLYLIASHTTDYQHPM 127 (158)
Q Consensus 89 ~WEQID~g~q~T~trKFL~~vPIvLFllsthyt~yd~~~ 127 (158)
++|++..|+.++..|+ ++---+..|- ....+++|.|
T Consensus 27 ~~~el~iG~~~~~~rt-iT~~di~~FA--~~sgD~nPiH 62 (154)
T d2b3na1 27 FEGELKEGYRFEYEKK-LCEIDVAMFG--LISGDLNPVH 62 (154)
T ss_dssp CCSCCCTTCEEEEEEE-CCHHHHHHHH--HHHCCCCHHH
T ss_pred cccccCCCCEEEEEEE-EeHHHHHHHH--HhhCCCCCCE
Confidence 7788999999987776 7888888884 4455666655
No 5
>d1xkpc1 d.198.1.1 (C:2-127) Chaperone protein YscB {Yersinia pestis [TaxId: 632]}
Probab=6.58 E-value=66 Score=22.64 Aligned_cols=11 Identities=55% Similarity=1.235 Sum_probs=9.5
Q ss_pred cCC-CCCccccC
Q 031522 75 TPF-AEDQGIYN 85 (158)
Q Consensus 75 tPF-~~~qG~y~ 85 (158)
-|| ++.||+|+
T Consensus 14 gpFVad~qG~Y~ 25 (126)
T d1xkpc1 14 KPFVADKQGVYR 25 (126)
T ss_dssp CCCCCCTTSCEE
T ss_pred CCcccCCCCceE
Confidence 599 88999996
No 6
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.51 E-value=28 Score=21.31 Aligned_cols=14 Identities=21% Similarity=0.726 Sum_probs=10.6
Q ss_pred cceeeecCCCCCCc
Q 031522 88 TWWEQIDNGQQLTR 101 (158)
Q Consensus 88 T~WEQID~g~q~T~ 101 (158)
..||+++.|.|+.-
T Consensus 35 ~~we~~NkGKlWkD 48 (55)
T d3cx5i1 35 SWYENHNKGKLWKD 48 (55)
T ss_dssp HHHHHHTTTTSHHH
T ss_pred HHHHhccCcccHHH
Confidence 47888888888743
No 7
>d1nbwb_ c.51.3.2 (B:) Glycerol dehydratase reactivase, beta subunit {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.31 E-value=1.2e+02 Score=20.63 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=15.4
Q ss_pred hhhhHHHHhHhhheeeeecCcCCC
Q 031522 55 TIVNLAHFLITYHFFHWKKGTPFA 78 (158)
Q Consensus 55 Tltn~~h~~~ty~~fHwvKGtPF~ 78 (158)
++-++..|+.=| +||.||.
T Consensus 92 ~~R~iG~NAARl-----vKg~Pf~ 110 (113)
T d1nbwb_ 92 QLRTLGANAGQL-----VKVLPLS 110 (113)
T ss_dssp HHHHHHHHHHHH-----HHTCCCC
T ss_pred HHHHHHHHHHHH-----HhcCCCc
Confidence 567888888876 7999994
No 8
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.11 E-value=31 Score=21.61 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=10.5
Q ss_pred cceeeecCCCCCC
Q 031522 88 TWWEQIDNGQQLT 100 (158)
Q Consensus 88 T~WEQID~g~q~T 100 (158)
..||+++.|.|+.
T Consensus 41 ~iwe~~NkGKlWK 53 (62)
T d1ppjw_ 41 AIYEHINEGKLWK 53 (62)
T ss_dssp HHHHHHTTTTSHH
T ss_pred HHHHhcccccchH
Confidence 4789999988875
No 9
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=5.67 E-value=1.1e+02 Score=20.49 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=19.7
Q ss_pred HHhhcccCCCCchhhhHHHHhhhh
Q 031522 115 LIASHTTDYQHPMLFFNTLAVFVL 138 (158)
Q Consensus 115 llsthyt~yd~~~f~iN~~~l~~v 138 (158)
++++.+.|-|..|.+.|..++...
T Consensus 48 l~T~~f~H~~~~Hl~~N~~~l~~~ 71 (180)
T d3b45a1 48 YFTHALMHFSLMHILFNLLWWWYL 71 (180)
T ss_dssp GTGGGGCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788899999999999877543
No 10
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=5.39 E-value=1.4e+02 Score=20.29 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.4
Q ss_pred HHhhcccCCCCchhhhHHHHhhh
Q 031522 115 LIASHTTDYQHPMLFFNTLAVFV 137 (158)
Q Consensus 115 llsthyt~yd~~~f~iN~~~l~~ 137 (158)
++++.+.|-|..|+..|..++..
T Consensus 50 l~T~~f~H~~~~Hl~~N~~~l~~ 72 (189)
T d2nr9a1 50 YISHTLVHLSNLHILFNLSWFFI 72 (189)
T ss_dssp HHHGGGCCSSHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999987654
Done!