BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031524
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DIN|A Chain A, Dienelactone Hydrolase At 2.8 Angstroms
Length = 234
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 45 KKIQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALI 100
+ I IQ D TF A V K AP IV+ QE +GV+ ++ +S L + G+ A+
Sbjct: 4 EGISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRE---TVSWLVDQGYAAVC 60
Query: 101 PDLYRGK---VGLDT------AEAQHLMSGLDWPGAVKDIHASVNWLK 139
PDLY + LD +A L D V D+ A++ + +
Sbjct: 61 PDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYAR 108
>pdb|1ZI6|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s) Mutant- 1.7 A
Length = 236
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 45 KKIQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIP 101
+ I IQ D TF A V K AP IV+ QE +GV+ ++ + ++ G+ A+ P
Sbjct: 4 EGISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWL--VDQGYAAVCP 61
Query: 102 DLYRGK---VGLDT------AEAQHLMSGLDWPGAVKDIHASVNWLK 139
DLY + LD +A L D V D+ A++ + +
Sbjct: 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYAR 108
>pdb|1ZIC|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s, R206a) Mutant- 1.7 A
Length = 236
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 45 KKIQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIP 101
+ I IQ D TF A V K AP IV+ QE +GV+ ++ + ++ G+ A+ P
Sbjct: 4 EGISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWL--VDQGYAAVCP 61
Query: 102 DLYRGK---VGLDT------AEAQHLMSGLDWPGAVKDIHASVNWLK 139
DLY + LD +A L D V D+ A++ + +
Sbjct: 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYAR 108
>pdb|1GGV|A Chain A, Crystal Structure Of The C123s Mutant Of Dienelactone
Hydrolase (Dlh) Bound With The Pms Moiety Of The
Protease Inhibitor, Phenylmethylsulfonyl Fluoride (Pmsf)
Length = 232
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 45 KKIQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALI 100
+ I IQ D TF A V K AP IV+ QE +GV+ ++ +S L + G+ A+
Sbjct: 4 EGISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRE---TVSWLVDQGYAAVC 60
Query: 101 PDLYRGK---VGLDT------AEAQHLMSGLDWPGAVKDIHASVNWLK 139
PDLY + LD +A L D V D+ A++ + +
Sbjct: 61 PDLYARQAPGTALDPQDEAQREQAYKLWQAFDMEAGVGDLEAAIRYAR 108
>pdb|1ZIY|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (C123s) Bound With The Pms Moiety Of The Protease
Inhibitor, Phenylmethylsulfonyl Fluoride (Pmsf)- 1.9 A
Length = 236
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 45 KKIQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIP 101
+ I IQ D TF A V K AP IV+ QE +GV+ ++ + ++ G+ A+ P
Sbjct: 4 EGISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWL--VDQGYAAVCP 61
Query: 102 DLYRGK---VGLDT------AEAQHLMSGLDWPGAVKDIHASVNWLK 139
DLY + LD +A L D V D+ A++ + +
Sbjct: 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYAR 108
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2E|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2J|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
pdb|2O2J|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
Length = 422
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 65 DAPGIVVVQ-EWWGVDFEIKNHAVKISQLNPG-FKALIPDLYRGKVGLDTAEAQHLMSGL 122
D PG+ +V E G E HA + +PG F L + + G T E+ + +GL
Sbjct: 272 DDPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDG-QTIESHSISAGL 330
Query: 123 DWPGAVKDIHASVNWLKANG 142
D+PG V HA WLK G
Sbjct: 331 DYPG-VGPEHA---WLKEAG 346
>pdb|3F67|A Chain A, Crystal Structure Of Putative Dienelactone Hydrolase From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 241
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 67 PGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLY 104
P ++VVQE +GV I++ +++Q G+ A+ P+LY
Sbjct: 33 PIVIVVQEIFGVHEHIRDLCRRLAQ--EGYLAIAPELY 68
>pdb|4DVY|P Chain P, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 876
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 65 DAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLYRGKVGLDTAEAQHLMSGLDW 124
DA I Q G+ E+ + KIS+ F + GK D ++A+ + L
Sbjct: 671 DARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGK-NKDFSKAEETLKAL-- 727
Query: 125 PGAVKDIHASVNWLKANGSKKASINNLWN 153
G+VKD+ + W+ + A++N N
Sbjct: 728 KGSVKDLGINPEWISKVENLNAALNEFKN 756
>pdb|4G0H|A Chain A, Crystal Structure Of The N-Terminal Domain Of Helicobacter
Pylori Caga Protein
Length = 916
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 65 DAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLYRGKVGLDTAEAQHLMSGLDW 124
DA I Q G+ E+ + KIS+ F + GK D ++A+ + L
Sbjct: 671 DARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGK-NKDFSKAEETLKAL-- 727
Query: 125 PGAVKDIHASVNWLKANGSKKASINNLWN 153
G+VKD+ + W+ + A++N N
Sbjct: 728 KGSVKDLGINPEWISKVENLNAALNEFKN 756
>pdb|4DVZ|A Chain A, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 569
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 65 DAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLYRGKVGLDTAEAQHLMSGLDW 124
DA I Q G+ E+ + KIS+ F + GK D ++A+ + L
Sbjct: 411 DARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGK-NKDFSKAEETLKAL-- 467
Query: 125 PGAVKDIHASVNWLKANGSKKASINNLWN 153
G+VKD+ + W+ + A++N N
Sbjct: 468 KGSVKDLGINPEWISKVENLNAALNEFKN 496
>pdb|1NO7|A Chain A, Structure Of The Large Protease Resistant Upper Domain Of
Vp5, The Major Capsid Protein Of Herpes Simplex Virus-1
pdb|1NO7|B Chain B, Structure Of The Large Protease Resistant Upper Domain Of
Vp5, The Major Capsid Protein Of Herpes Simplex Virus-1
Length = 604
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 5 ASRILSRSTPLLKPSLARTHFPAGYRFAVRSMADSAA 41
A R LSR PL+ P+L +F + + V+ + +SAA
Sbjct: 529 ALRDLSRQVPLVPPALGANYFSSIRQPVVQHVRESAA 565
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 26.9 bits (58), Expect = 5.1, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 100 IPDLYRGKVGLDTAEAQHLMSGLDWPGAVKDIHASVNWLKANGSKKASINNLWNFNRLA 158
+ DLY G + T + + W G+ K + + +A G KK N +LA
Sbjct: 140 VEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLA 198
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 35 SMADSAASPFKKIQIQRDD-TTFDAYVVGKEDAPGIVVVQEWWGV 78
SMA A F Q + DD + F A V DAPG+ V+ W G+
Sbjct: 162 SMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGL 206
>pdb|4DJD|C Chain C, Crystal Structure Of Folate-Free Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr)
pdb|4DJD|E Chain E, Crystal Structure Of Folate-Free Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr)
pdb|4DJE|C Chain C, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate
pdb|4DJE|E Chain E, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate
pdb|4DJF|C Chain C, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate And Ti(Iii) Citrate
Reductant
pdb|4DJF|E Chain E, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate And Ti(Iii) Citrate
Reductant
Length = 446
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 18 PSLARTHFPAGYRFAVRSMADSAASPFKKIQIQRDD-TTFDAYVVGKEDAPGIVVVQEWW 76
P T+F Y ++V +S P + + D + AY GK +A I V +
Sbjct: 336 PVYVTTNFSLTY-YSVEGEIESTKIPSYLLSVDTDGLSVLTAYADGKFEAEKIAAVMKKV 394
Query: 77 GVDFEIKNHAVKISQLNPGFKALIPDL 103
+D ++K H + I K + DL
Sbjct: 395 DLDNKVKRHRIIIPGAVAVLKGKLEDL 421
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,718,052
Number of Sequences: 62578
Number of extensions: 187812
Number of successful extensions: 357
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 14
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)