BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031524
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46209|USF_AQUPY Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1
Length = 231
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 66 APGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSGL 122
PG++V+ EWWG++ + N + GF A PD Y GK + +A LM+ +
Sbjct: 25 GPGVIVIHEWWGLESPLSNIKEICDRFAQEGFVAFAPDFYEGKYADNPDDAGKLMTDM 82
>sp|O67802|DLHH_AQUAE Putative carboxymethylenebutenolidase OS=Aquifex aeolicus (strain
VF5) GN=aq_1997 PE=3 SV=1
Length = 231
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 66 APGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSGL 122
P ++V EWWG++ + N +L + GF A PD Y+G+ + +A LM+ +
Sbjct: 25 GPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQYADNPDDAGKLMTEM 82
>sp|P71505|DLHH_METEA Putative carboxymethylenebutenolidase OS=Methylobacterium
extorquens (strain ATCC 14718 / DSM 1338 / AM1)
GN=MexAM1_META1p1735 PE=3 SV=2
Length = 291
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 17/163 (10%)
Query: 7 RILSRSTPLLKPSLARTHFPAGYRFAVRSMA-------DSAASPFKKIQIQRDDTTFDAY 59
R L+ T L + ++ T G+ AV+ +A D+ +++I D AY
Sbjct: 9 RSLAAQTTLSRRTVIATSLATGFALAVQPVAAQTTIATDANGLIAGEVKIPMQDGVIPAY 68
Query: 60 VVGKEDA---PGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLY--RGKVGLDTAE 114
+ P I+VVQE +GV IK+ ++++L G+ AL P+LY +G V T
Sbjct: 69 RAMPAEGGPFPTILVVQEIFGVHEHIKDVCRRLAKL--GYFALAPELYARQGDVSTLTNI 126
Query: 115 AQ---HLMSGLDWPGAVKDIHASVNWLKANGSKKASINNLWNF 154
Q ++S + + D+ A+V + K G + + F
Sbjct: 127 QQIVSEVVSKVPDAQVMSDLDAAVAFAKGTGKADTARLGITGF 169
>sp|Q43914|DLHH_AZOBR Putative carboxymethylenebutenolidase OS=Azospirillum brasilense
PE=3 SV=1
Length = 231
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 14/84 (16%)
Query: 52 DDTTFDAYVV---GKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLY-RGK 107
DD +F AYV G APG+VV+QE +GV+ +++ + G+ A+ PDL+ R +
Sbjct: 10 DDGSFSAYVAKPAGGGPAPGLVVIQEIFGVNQVMRDLCDAFAAQ--GWLAVCPDLFWRQE 67
Query: 108 VGLDTAEAQH--------LMSGLD 123
G+ + LM+G+D
Sbjct: 68 PGVQITDKTQEEWNRAFALMNGMD 91
>sp|P0A115|CLCD_PSESB Carboxymethylenebutenolidase OS=Pseudomonas sp. (strain B13)
GN=clcD PE=1 SV=1
Length = 236
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 45 KKIQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIP 101
+ I IQ D TF A V K AP IV+ QE +GV+ ++ + ++ G+ A+ P
Sbjct: 4 EGISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWL--VDQGYAAVCP 61
Query: 102 DLYRGK---VGLDT------AEAQHLMSGLDWPGAVKDIHASVNWLK 139
DLY + LD +A L D V D+ A++ + +
Sbjct: 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYAR 108
>sp|P0A114|CLCD_PSEPU Carboxymethylenebutenolidase OS=Pseudomonas putida GN=clcD PE=1
SV=1
Length = 236
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 45 KKIQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIP 101
+ I IQ D TF A V K AP IV+ QE +GV+ ++ + ++ G+ A+ P
Sbjct: 4 EGISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWL--VDQGYAAVCP 61
Query: 102 DLYRGK---VGLDT------AEAQHLMSGLDWPGAVKDIHASVNWLK 139
DLY + LD +A L D V D+ A++ + +
Sbjct: 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYAR 108
>sp|Q8GU87|PDR6_ORYSJ Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp.
japonica GN=PDR6 PE=2 SV=3
Length = 1426
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 33 VRSMADSAASPFKKIQIQRDDTTFDAYV-VGKEDAPGI 69
+RS D+ F KI+++ +D T DAYV VG P I
Sbjct: 93 IRSRFDAVQIEFPKIEVRYEDLTVDAYVHVGSRALPTI 130
>sp|Q5ARK3|SWR1_EMENI Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=swr1 PE=3 SV=2
Length = 1698
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 32 AVRSMADSAASPFKKIQIQRDDTTFDAYVVGKEDAPGIVVV-----QEWWGVDFEIKNHA 86
+V + A + K+I+ Q+ + + + E +PG V + ++ + HA
Sbjct: 745 SVPPVMSPATNLLKQIERQQHEP-YHSRAASSEASPGTVATKPSEPESVSSIEAPAEKHA 803
Query: 87 VKISQLNPGFKALIPDLYRGKVGLDTAEAQHLMSGLDWPGAVKDIH 132
PG K IP L RG + E QH GLDW + H
Sbjct: 804 QPSESPGPGLKTPIPHLLRGTL----REYQHF--GLDWLAGLYSNH 843
>sp|Q9RFN0|BGAL_CARML Beta-galactosidase BgaB OS=Carnobacterium maltaromaticum GN=bgaB
PE=1 SV=1
Length = 668
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 133 ASVNWLKANGSKKASINNLWNFNRLA 158
++VNW +ANG+K LW++ LA
Sbjct: 306 SAVNWRRANGAKSPGQMRLWSYEALA 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,037,456
Number of Sequences: 539616
Number of extensions: 2285320
Number of successful extensions: 5260
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5256
Number of HSP's gapped (non-prelim): 11
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)