Query 031525
Match_columns 158
No_of_seqs 164 out of 1692
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 00:51:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 4.1E-18 1.4E-22 112.4 7.2 79 70-149 12-90 (91)
2 1x4j_A Ring finger protein 38; 99.6 9E-17 3.1E-21 102.0 4.1 68 81-150 7-74 (75)
3 2kiz_A E3 ubiquitin-protein li 99.6 8.7E-16 3E-20 95.8 5.7 58 95-153 11-68 (69)
4 2ep4_A Ring finger protein 24; 99.6 2.2E-15 7.5E-20 95.2 5.5 57 95-152 12-68 (74)
5 1iym_A EL5; ring-H2 finger, ub 99.6 8.8E-16 3E-20 91.6 3.4 51 96-147 3-54 (55)
6 2ect_A Ring finger protein 126 99.6 2.1E-15 7.1E-20 96.2 5.2 58 95-153 12-69 (78)
7 1v87_A Deltex protein 2; ring- 99.5 1.6E-14 5.6E-19 98.4 5.8 59 97-155 24-101 (114)
8 2ecm_A Ring finger and CHY zin 99.5 1.9E-14 6.7E-19 85.6 3.9 51 96-147 3-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.5 2E-14 6.8E-19 92.6 4.2 51 97-148 14-76 (81)
10 2d8s_A Cellular modulator of i 99.5 7.1E-14 2.4E-18 89.9 5.1 59 93-152 10-74 (80)
11 3ng2_A RNF4, snurf, ring finge 99.4 4.4E-14 1.5E-18 88.2 2.8 55 95-150 7-65 (71)
12 2djb_A Polycomb group ring fin 99.4 1.7E-13 5.9E-18 86.0 5.2 55 96-154 13-68 (72)
13 2ea6_A Ring finger protein 4; 99.4 6.3E-14 2.1E-18 86.9 3.0 53 95-148 12-68 (69)
14 2xeu_A Ring finger protein 4; 99.4 6.9E-14 2.3E-18 85.5 2.9 52 97-149 2-57 (64)
15 3dpl_R Ring-box protein 1; ubi 99.4 1.7E-13 6E-18 92.6 5.0 52 95-147 34-100 (106)
16 2d8t_A Dactylidin, ring finger 99.4 4.9E-14 1.7E-18 88.3 1.7 51 95-149 12-62 (71)
17 2ecy_A TNF receptor-associated 99.4 2.1E-13 7.3E-18 84.2 4.2 52 95-149 12-63 (66)
18 1chc_A Equine herpes virus-1 r 99.4 1.6E-13 5.4E-18 85.1 3.2 50 96-148 3-52 (68)
19 2ysl_A Tripartite motif-contai 99.4 4.7E-13 1.6E-17 84.0 4.7 52 95-149 17-70 (73)
20 2ct2_A Tripartite motif protei 99.4 7.5E-13 2.6E-17 85.8 5.9 55 95-149 12-69 (88)
21 2ecn_A Ring finger protein 141 99.4 1.7E-13 5.8E-18 85.5 2.0 51 95-150 12-62 (70)
22 2csy_A Zinc finger protein 183 99.4 5.9E-13 2E-17 85.4 4.4 49 95-147 12-60 (81)
23 1t1h_A Gspef-atpub14, armadill 99.4 8.2E-13 2.8E-17 84.0 5.0 52 95-149 5-56 (78)
24 4ayc_A E3 ubiquitin-protein li 99.3 3.5E-13 1.2E-17 95.0 3.2 48 97-148 52-99 (138)
25 2yur_A Retinoblastoma-binding 99.3 6.9E-13 2.3E-17 83.8 4.1 50 96-148 13-64 (74)
26 3lrq_A E3 ubiquitin-protein li 99.3 4.5E-13 1.5E-17 89.5 3.1 50 96-148 20-70 (100)
27 1g25_A CDK-activating kinase a 99.3 1.6E-12 5.4E-17 80.0 4.4 53 97-149 2-56 (65)
28 2ecv_A Tripartite motif-contai 99.3 2.8E-12 9.5E-17 82.4 4.7 53 95-150 16-73 (85)
29 3fl2_A E3 ubiquitin-protein li 99.3 2.6E-12 8.8E-17 88.8 4.7 50 96-148 50-99 (124)
30 2ecw_A Tripartite motif-contai 99.3 3.1E-12 1E-16 82.2 4.8 51 96-149 17-72 (85)
31 2ysj_A Tripartite motif-contai 99.3 3.4E-12 1.2E-16 77.9 4.4 45 95-142 17-63 (63)
32 2egp_A Tripartite motif-contai 99.3 7.1E-13 2.4E-17 84.3 1.1 52 95-149 9-66 (79)
33 4a0k_B E3 ubiquitin-protein li 99.3 6.1E-13 2.1E-17 91.3 0.5 52 95-147 45-111 (117)
34 3ztg_A E3 ubiquitin-protein li 99.3 5.6E-12 1.9E-16 82.5 5.0 50 95-147 10-61 (92)
35 2y43_A E3 ubiquitin-protein li 99.2 3E-12 1E-16 85.1 3.5 48 97-148 21-69 (99)
36 2ckl_A Polycomb group ring fin 99.2 4.9E-12 1.7E-16 85.3 4.5 50 96-149 13-63 (108)
37 2ct0_A Non-SMC element 1 homol 99.2 5.1E-12 1.7E-16 79.9 4.0 57 95-154 12-70 (74)
38 4ap4_A E3 ubiquitin ligase RNF 99.2 3.7E-12 1.3E-16 88.3 3.4 54 95-149 4-61 (133)
39 2ecj_A Tripartite motif-contai 99.2 4.7E-12 1.6E-16 75.8 3.4 45 95-142 12-58 (58)
40 1z6u_A NP95-like ring finger p 99.2 8.3E-12 2.8E-16 89.2 3.8 50 97-149 77-126 (150)
41 3hct_A TNF receptor-associated 99.2 1.2E-11 4E-16 84.9 4.2 52 95-149 15-66 (118)
42 2ckl_B Ubiquitin ligase protei 99.2 9.7E-12 3.3E-16 89.9 3.6 49 97-148 53-102 (165)
43 1jm7_A BRCA1, breast cancer ty 99.2 1.1E-11 3.9E-16 83.7 3.4 51 97-150 20-72 (112)
44 3l11_A E3 ubiquitin-protein li 99.2 2.4E-12 8.2E-17 87.8 -0.2 49 96-147 13-61 (115)
45 1rmd_A RAG1; V(D)J recombinati 99.2 1.3E-11 4.6E-16 84.2 3.3 49 98-149 23-71 (116)
46 3knv_A TNF receptor-associated 99.1 1.5E-11 5E-16 87.1 3.0 51 95-148 28-78 (141)
47 4ap4_A E3 ubiquitin ligase RNF 99.1 1.1E-11 3.9E-16 85.7 1.8 54 95-149 69-126 (133)
48 1e4u_A Transcriptional repress 99.1 4.6E-11 1.6E-15 76.3 4.4 54 95-149 8-63 (78)
49 2y1n_A E3 ubiquitin-protein li 99.1 3.7E-11 1.3E-15 97.4 4.8 52 95-149 329-380 (389)
50 1bor_A Transcription factor PM 99.1 2.4E-11 8.1E-16 72.7 1.4 49 95-150 3-51 (56)
51 2kr4_A Ubiquitin conjugation f 99.0 1E-10 3.4E-15 75.8 3.5 49 96-148 12-60 (85)
52 2vje_A E3 ubiquitin-protein li 99.0 9.2E-11 3.1E-15 72.0 3.1 48 96-147 6-56 (64)
53 2kre_A Ubiquitin conjugation f 99.0 1.4E-10 4.7E-15 77.5 3.9 50 96-149 27-76 (100)
54 1wgm_A Ubiquitin conjugation f 99.0 2.7E-10 9.3E-15 75.7 4.9 50 96-149 20-70 (98)
55 2vje_B MDM4 protein; proto-onc 99.0 2.3E-10 7.7E-15 70.0 2.9 49 96-148 5-56 (63)
56 1jm7_B BARD1, BRCA1-associated 99.0 8.9E-11 3.1E-15 80.3 1.1 46 97-148 21-67 (117)
57 3hcs_A TNF receptor-associated 99.0 3.4E-10 1.1E-14 82.1 3.6 52 95-149 15-66 (170)
58 4ic3_A E3 ubiquitin-protein li 98.9 1.9E-10 6.5E-15 72.5 1.7 44 97-148 23-67 (74)
59 2c2l_A CHIP, carboxy terminus 98.9 5.8E-10 2E-14 86.1 4.2 50 96-148 206-255 (281)
60 2yu4_A E3 SUMO-protein ligase 98.8 2E-09 7E-14 70.8 4.1 48 95-145 4-59 (94)
61 2f42_A STIP1 homology and U-bo 98.8 3.1E-09 1E-13 77.9 3.8 51 95-148 103-153 (179)
62 3k1l_B Fancl; UBC, ring, RWD, 98.8 6.8E-10 2.3E-14 88.4 0.2 54 96-149 306-374 (381)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.8 5.8E-09 2E-13 63.1 3.9 50 95-147 3-58 (60)
64 2ecg_A Baculoviral IAP repeat- 98.8 2E-09 6.7E-14 67.9 1.6 44 98-149 25-69 (75)
65 2ea5_A Cell growth regulator w 98.7 5.4E-09 1.8E-13 64.8 3.3 46 95-148 12-58 (68)
66 2yho_A E3 ubiquitin-protein li 98.6 5.3E-09 1.8E-13 66.7 0.7 43 98-148 18-61 (79)
67 1wim_A KIAA0161 protein; ring 98.6 1.6E-08 5.6E-13 66.3 2.4 50 96-145 3-61 (94)
68 3t6p_A Baculoviral IAP repeat- 98.5 2.6E-08 8.9E-13 79.9 1.5 44 97-148 294-338 (345)
69 3vk6_A E3 ubiquitin-protein li 98.4 1.1E-07 3.7E-12 62.6 3.4 47 100-148 3-49 (101)
70 3htk_C E3 SUMO-protein ligase 98.4 8.2E-08 2.8E-12 73.9 3.0 50 96-148 179-232 (267)
71 2bay_A PRE-mRNA splicing facto 98.4 9.9E-08 3.4E-12 57.8 1.8 47 99-149 4-51 (61)
72 3nw0_A Non-structural maintena 97.7 2.5E-05 8.6E-10 59.5 3.7 53 97-152 179-233 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.029 9.9E-07 36.3 2.5 32 98-131 3-36 (101)
74 2lri_C Autoimmune regulator; Z 93.6 0.056 1.9E-06 32.7 2.9 50 95-148 9-62 (66)
75 1we9_A PHD finger family prote 93.0 0.028 9.6E-07 33.5 0.9 52 95-146 3-59 (64)
76 3lqh_A Histone-lysine N-methyl 87.6 0.21 7.2E-06 36.2 1.6 48 99-146 3-64 (183)
77 2k16_A Transcription initiatio 87.3 0.12 4.1E-06 31.7 0.1 54 95-149 15-72 (75)
78 3m62_A Ubiquitin conjugation f 86.9 0.51 1.7E-05 42.3 3.9 50 96-149 889-939 (968)
79 1wep_A PHF8; structural genomi 86.3 1.3 4.6E-05 27.2 4.7 50 96-146 10-64 (79)
80 2kgg_A Histone demethylase jar 84.7 0.75 2.6E-05 26.0 2.7 44 100-143 4-52 (52)
81 2ko5_A Ring finger protein Z; 84.2 0.51 1.8E-05 30.4 1.9 48 97-150 27-75 (99)
82 2vpb_A Hpygo1, pygopus homolog 83.4 0.86 2.9E-05 27.2 2.6 34 95-128 5-40 (65)
83 1wem_A Death associated transc 81.9 0.47 1.6E-05 29.0 1.1 49 98-148 16-73 (76)
84 2ri7_A Nucleosome-remodeling f 81.0 0.45 1.5E-05 33.7 0.8 48 96-144 6-58 (174)
85 1f62_A Transcription factor WS 80.4 0.6 2E-05 26.2 1.1 44 100-144 2-49 (51)
86 1wil_A KIAA1045 protein; ring 79.8 1.2 4E-05 28.1 2.4 36 95-131 12-47 (89)
87 2l5u_A Chromodomain-helicase-D 78.1 0.69 2.4E-05 27.1 0.9 46 95-144 8-57 (61)
88 2yt5_A Metal-response element- 77.8 1.1 3.7E-05 26.5 1.7 52 95-146 3-62 (66)
89 3u5n_A E3 ubiquitin-protein li 77.7 0.66 2.2E-05 34.0 0.9 48 95-146 4-55 (207)
90 3o36_A Transcription intermedi 76.4 0.68 2.3E-05 33.2 0.6 47 97-147 3-53 (184)
91 1mm2_A MI2-beta; PHD, zinc fin 75.2 0.46 1.6E-05 27.9 -0.5 49 95-146 6-57 (61)
92 1fp0_A KAP-1 corepressor; PHD 74.0 1.2 4.3E-05 28.2 1.3 47 95-145 22-72 (88)
93 1wee_A PHD finger family prote 72.8 0.52 1.8E-05 28.6 -0.7 52 96-148 14-69 (72)
94 1weo_A Cellulose synthase, cat 72.2 12 0.00041 23.8 5.5 52 97-148 15-70 (93)
95 2xb1_A Pygopus homolog 2, B-ce 71.5 2.2 7.4E-05 27.9 2.1 49 98-146 3-62 (105)
96 1wew_A DNA-binding family prot 71.3 1 3.4E-05 27.7 0.4 48 97-146 15-73 (78)
97 2ysm_A Myeloid/lymphoid or mix 70.4 1 3.6E-05 29.4 0.3 49 95-143 4-55 (111)
98 2ku3_A Bromodomain-containing 70.1 4.9 0.00017 24.2 3.4 50 95-144 13-65 (71)
99 2lbm_A Transcriptional regulat 69.5 4 0.00014 28.2 3.2 46 95-144 60-116 (142)
100 2yql_A PHD finger protein 21A; 68.6 0.44 1.5E-05 27.4 -1.6 47 95-144 6-55 (56)
101 2lv9_A Histone-lysine N-methyl 67.8 1.1 3.7E-05 28.9 0.0 44 99-144 29-75 (98)
102 2puy_A PHD finger protein 21A; 67.8 0.33 1.1E-05 28.4 -2.3 47 96-146 3-53 (60)
103 2l43_A N-teminal domain from h 65.5 5.4 0.00018 25.1 3.0 54 95-148 22-78 (88)
104 3o70_A PHD finger protein 13; 64.5 0.96 3.3E-05 27.2 -0.7 47 96-144 17-66 (68)
105 1z60_A TFIIH basal transcripti 64.2 2.1 7.2E-05 25.1 0.8 42 99-142 16-58 (59)
106 1weu_A Inhibitor of growth fam 63.3 3.7 0.00013 26.1 1.9 47 96-147 34-87 (91)
107 3v43_A Histone acetyltransfera 62.0 8.3 0.00028 25.1 3.5 47 97-143 4-62 (112)
108 3i2d_A E3 SUMO-protein ligase 61.3 5.3 0.00018 32.0 2.8 48 99-148 250-300 (371)
109 2yw8_A RUN and FYVE domain-con 61.2 5 0.00017 24.7 2.2 53 96-148 17-75 (82)
110 4fo9_A E3 SUMO-protein ligase 61.0 5.5 0.00019 31.8 2.9 48 99-148 216-266 (360)
111 2cs3_A Protein C14ORF4, MY039 60.0 20 0.00069 22.3 4.7 38 96-134 13-52 (93)
112 2ro1_A Transcription intermedi 59.6 2.3 7.7E-05 30.7 0.4 46 98-146 2-50 (189)
113 1wen_A Inhibitor of growth fam 59.4 4.7 0.00016 24.3 1.8 46 96-146 14-66 (71)
114 2o35_A Hypothetical protein DU 59.0 3.6 0.00012 26.7 1.2 13 122-134 42-54 (105)
115 3fyb_A Protein of unknown func 58.5 3.8 0.00013 26.5 1.2 12 122-133 41-52 (104)
116 1z2q_A LM5-1; membrane protein 58.1 7.3 0.00025 24.1 2.6 35 96-130 19-54 (84)
117 1vfy_A Phosphatidylinositol-3- 55.9 7.2 0.00025 23.4 2.2 31 99-129 12-43 (73)
118 1spf_A Pulmonary surfactant-as 55.7 18 0.00062 18.3 3.3 23 1-23 1-23 (35)
119 1joc_A EEA1, early endosomal a 54.1 7.1 0.00024 26.1 2.1 32 98-129 69-101 (125)
120 3t7l_A Zinc finger FYVE domain 53.9 7.6 0.00026 24.4 2.1 33 98-130 20-53 (90)
121 1wev_A Riken cDNA 1110020M19; 53.6 5.3 0.00018 25.0 1.4 50 97-146 15-73 (88)
122 3ql9_A Transcriptional regulat 52.8 11 0.00037 25.5 2.9 47 95-145 54-111 (129)
123 1dvp_A HRS, hepatocyte growth 51.6 6.6 0.00023 28.7 1.8 32 98-129 161-193 (220)
124 2k1k_A Ephrin type-A receptor 51.5 25 0.00085 18.4 4.1 27 6-32 5-31 (38)
125 2kwj_A Zinc finger protein DPF 51.1 5.3 0.00018 26.2 1.1 33 99-131 2-41 (114)
126 1x4u_A Zinc finger, FYVE domai 50.6 10 0.00034 23.4 2.3 34 96-129 12-46 (84)
127 1wfk_A Zinc finger, FYVE domai 49.6 11 0.00038 23.5 2.4 52 96-147 7-65 (88)
128 3ask_A E3 ubiquitin-protein li 48.3 3.7 0.00013 30.6 -0.0 45 99-144 175-224 (226)
129 1x64_A Alpha-actinin-2 associa 47.2 24 0.00081 21.5 3.7 40 97-148 24-63 (89)
130 3zyq_A Hepatocyte growth facto 47.0 8.4 0.00029 28.4 1.8 33 98-130 164-197 (226)
131 2e6s_A E3 ubiquitin-protein li 46.3 2.7 9.1E-05 25.9 -0.9 45 99-144 27-76 (77)
132 1iml_A CRIP, cysteine rich int 45.6 6.9 0.00024 23.2 0.9 43 99-146 28-71 (76)
133 4gne_A Histone-lysine N-methyl 45.6 15 0.00053 23.9 2.7 47 95-147 12-64 (107)
134 2cu8_A Cysteine-rich protein 2 45.0 14 0.00049 21.7 2.4 40 98-148 9-48 (76)
135 1zbd_B Rabphilin-3A; G protein 44.7 11 0.00039 25.5 2.0 35 95-129 52-88 (134)
136 2zet_C Melanophilin; complex, 44.5 10 0.00034 26.5 1.7 32 97-128 67-100 (153)
137 3o7a_A PHD finger protein 13 v 44.2 2.4 8.2E-05 23.8 -1.3 41 103-144 8-51 (52)
138 2dar_A PDZ and LIM domain prot 43.6 22 0.00077 21.6 3.2 39 97-147 24-62 (90)
139 1xwh_A Autoimmune regulator; P 42.6 8.8 0.0003 22.5 1.0 47 95-145 5-55 (66)
140 2dj7_A Actin-binding LIM prote 42.6 15 0.00051 22.1 2.2 40 97-147 14-53 (80)
141 3c6w_A P28ING5, inhibitor of g 42.4 3.4 0.00012 23.9 -0.8 44 96-144 7-57 (59)
142 1y02_A CARP2, FYVE-ring finger 41.1 11 0.00036 25.2 1.4 48 96-144 17-65 (120)
143 2d8v_A Zinc finger FYVE domain 41.0 15 0.00051 21.9 1.8 33 95-131 5-38 (67)
144 2vnf_A ING 4, P29ING4, inhibit 37.9 4.2 0.00014 23.6 -0.9 44 96-144 8-58 (60)
145 2co8_A NEDD9 interacting prote 37.8 29 0.001 20.8 3.0 41 97-148 14-54 (82)
146 2jvx_A NF-kappa-B essential mo 37.2 8 0.00027 19.0 0.2 12 136-147 3-14 (28)
147 3mjh_B Early endosome antigen 35.1 11 0.00036 19.4 0.5 10 137-146 6-15 (34)
148 1x4l_A Skeletal muscle LIM-pro 34.7 40 0.0014 19.3 3.2 40 98-147 5-46 (72)
149 1wyh_A SLIM 2, skeletal muscle 34.7 45 0.0015 19.0 3.4 39 99-147 6-44 (72)
150 1zfo_A LAsp-1; LIM domain, zin 34.0 9.9 0.00034 18.8 0.2 27 99-127 4-30 (31)
151 3mpx_A FYVE, rhogef and PH dom 33.9 8.6 0.00029 30.7 0.0 49 98-146 375-430 (434)
152 1x63_A Skeletal muscle LIM-pro 33.6 36 0.0012 20.1 2.9 40 99-148 16-55 (82)
153 3asl_A E3 ubiquitin-protein li 33.5 4.5 0.00016 24.2 -1.3 44 100-144 20-68 (70)
154 3a1b_A DNA (cytosine-5)-methyl 33.4 28 0.00097 24.4 2.6 35 95-133 76-113 (159)
155 2d8z_A Four and A half LIM dom 32.9 49 0.0017 18.8 3.3 37 99-147 6-42 (70)
156 1x62_A C-terminal LIM domain p 32.8 26 0.00089 20.7 2.1 37 98-146 15-51 (79)
157 2e6r_A Jumonji/ARID domain-con 32.8 8 0.00027 24.4 -0.3 49 96-145 14-66 (92)
158 3shb_A E3 ubiquitin-protein li 32.4 3.3 0.00011 25.5 -2.2 27 118-144 46-76 (77)
159 2d8x_A Protein pinch; LIM doma 31.7 29 0.001 19.8 2.2 37 99-147 6-42 (70)
160 1x68_A FHL5 protein; four-and- 30.6 41 0.0014 19.6 2.7 40 99-147 6-46 (76)
161 2ku7_A MLL1 PHD3-CYP33 RRM chi 30.4 18 0.00061 23.6 1.2 29 118-146 7-45 (140)
162 2cor_A Pinch protein; LIM doma 30.4 46 0.0016 19.7 3.0 39 97-147 14-52 (79)
163 1g47_A Pinch protein; LIM doma 30.0 48 0.0016 19.2 3.0 41 97-147 10-50 (77)
164 2lat_A Dolichyl-diphosphooligo 29.3 66 0.0023 16.8 4.0 27 17-43 6-32 (37)
165 1wd2_A Ariadne-1 protein homol 29.0 16 0.00056 21.1 0.6 13 136-148 6-18 (60)
166 2pv0_B DNA (cytosine-5)-methyl 28.2 34 0.0012 27.5 2.6 34 95-132 90-126 (386)
167 1nyp_A Pinch protein; LIM doma 28.0 56 0.0019 18.3 3.0 37 99-147 6-42 (66)
168 3kqi_A GRC5, PHD finger protei 27.8 49 0.0017 19.6 2.8 46 99-145 11-61 (75)
169 1x4k_A Skeletal muscle LIM-pro 27.8 43 0.0015 19.1 2.5 39 99-147 6-44 (72)
170 3kv4_A PHD finger protein 8; e 25.8 13 0.00045 30.4 -0.2 47 100-146 6-57 (447)
171 2d8y_A Eplin protein; LIM doma 24.9 60 0.002 19.6 2.8 11 99-109 16-26 (91)
172 1a7i_A QCRP2 (LIM1); LIM domai 24.8 21 0.00071 21.2 0.6 27 99-127 8-34 (81)
173 2jne_A Hypothetical protein YF 24.4 22 0.00076 22.9 0.7 39 99-146 33-71 (101)
174 3f6q_B LIM and senescent cell 23.3 48 0.0016 18.7 2.1 42 97-148 10-51 (72)
175 2l3k_A Rhombotin-2, linker, LI 23.2 37 0.0013 22.0 1.7 34 99-133 37-70 (123)
176 2xjy_A Rhombotin-2; oncoprotei 23.2 58 0.002 21.1 2.7 26 120-146 51-76 (131)
177 1m3v_A FLIN4, fusion of the LI 22.7 57 0.002 21.0 2.6 49 99-148 33-81 (122)
178 2gmg_A Hypothetical protein PF 22.3 13 0.00044 24.3 -0.8 23 118-146 72-94 (105)
179 2das_A Zinc finger MYM-type pr 22.2 83 0.0028 18.3 2.8 37 97-133 19-57 (62)
180 2cur_A Skeletal muscle LIM-pro 22.0 49 0.0017 18.7 1.9 11 99-109 6-16 (69)
181 2jmo_A Parkin; IBR, E3 ligase, 21.8 5.3 0.00018 24.5 -2.7 14 118-131 55-68 (80)
182 1v6g_A Actin binding LIM prote 21.8 44 0.0015 19.7 1.7 26 99-127 16-41 (81)
183 1wig_A KIAA1808 protein; LIM d 21.7 47 0.0016 19.3 1.8 10 99-108 6-15 (73)
184 3kv5_D JMJC domain-containing 21.6 57 0.002 26.9 2.8 47 98-145 37-88 (488)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.74 E-value=4.1e-18 Score=112.38 Aligned_cols=79 Identities=28% Similarity=0.526 Sum_probs=68.2
Q ss_pred CCCcchHHHHHhhCCcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 70 SPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 70 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
....+++++.++.+|...+.......+.+..|+||++.+..++.++.++|+|.||..||.+|++ .+.+||+||+.+.+.
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPPP 90 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSCC
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCCC
Confidence 3456788899999999998876555667789999999998888899999999999999999998 588999999988653
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9e-17 Score=102.00 Aligned_cols=68 Identities=34% Similarity=0.769 Sum_probs=55.6
Q ss_pred hhCCcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031525 81 NQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 81 ~~lp~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
+++|..+++... ...++..|+||++.+..++.++.++|+|.||..||.+|++ .+.+||+||+.+.+..
T Consensus 7 ~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 7 GQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK-ANRTCPICRADSGPSS 74 (75)
T ss_dssp SSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH-HCSSCTTTCCCCCCCC
T ss_pred hhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH-cCCcCcCcCCcCCCCC
Confidence 456777665432 2456679999999998888889999999999999999998 4789999999987653
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=8.7e-16 Score=95.77 Aligned_cols=58 Identities=40% Similarity=0.998 Sum_probs=50.3
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDD 153 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~ 153 (158)
...+..|+||++.+..++.++.++|+|.||..|+.+|++ .+.+||+||+.+......+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~ 68 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-TNKKCPICRVDIEAQLPSE 68 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH-HCSBCTTTCSBSCSCCCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH-cCCCCcCcCccccCcCCCC
Confidence 455679999999998778889999999999999999998 4788999999998766544
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=95.17 Aligned_cols=57 Identities=35% Similarity=0.902 Sum_probs=48.9
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFED 152 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~ 152 (158)
...+..|+||++.+.++...+.++|+|.||..||.+|++ .+.+||+||+.+......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE-VRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH-HCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH-cCCcCCCcCccccccccc
Confidence 345679999999998888888889999999999999998 477999999998765443
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.58 E-value=8.8e-16 Score=91.56 Aligned_cols=51 Identities=43% Similarity=1.009 Sum_probs=45.7
Q ss_pred CCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
+++.+|+||++.+.+++.+..++ |+|.||..|+.+|++ .+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 45679999999998888888897 999999999999998 5889999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=2.1e-15 Score=96.24 Aligned_cols=58 Identities=29% Similarity=0.807 Sum_probs=49.6
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDD 153 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~ 153 (158)
...+..|+||++.|..+..++.++|+|.||..||.+|++ .+.+||+||+.+.......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCCcccCC
Confidence 345679999999998777788899999999999999998 5789999999987664443
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.51 E-value=1.6e-14 Score=98.40 Aligned_cols=59 Identities=27% Similarity=0.520 Sum_probs=46.1
Q ss_pred CCcccccccccccCCC---------------CeEEeCCCChhhHhhHHHHHhc----CCCCCccccCcCCCCCCCCCC
Q 031525 97 AEHDCSVCLTEFEPQS---------------DINNLSCGHLFHKVCLEKWLDY----LNVTCPLCRTPLIPEFEDDPS 155 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~---------------~~~~l~C~H~fh~~Ci~~w~~~----~~~~CP~Cr~~~~~~~~~~~~ 155 (158)
.+..|+||++.|.++. ..+.++|+|.||..||.+|+.. .+.+||+||+.+.....+++.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 4569999999996543 3346789999999999999942 467899999998776655543
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.48 E-value=1.9e-14 Score=85.56 Aligned_cols=51 Identities=33% Similarity=0.827 Sum_probs=43.1
Q ss_pred CCCcccccccccccCC-CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 96 DAEHDCSVCLTEFEPQ-SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
.++..|+||++.+.++ +.++.++|+|.||..|+.+|++. +.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4567999999999544 34777899999999999999984 689999999774
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2e-14 Score=92.63 Aligned_cols=51 Identities=25% Similarity=0.740 Sum_probs=40.5
Q ss_pred CCcccccccccccC-----------CCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 97 AEHDCSVCLTEFEP-----------QSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~-----------~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
+++.|+||++.|.+ ++.++.++ |+|.||..||++|++ .+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 45678888887743 34466665 999999999999998 57899999998754
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=7.1e-14 Score=89.90 Aligned_cols=59 Identities=25% Similarity=0.610 Sum_probs=46.6
Q ss_pred cCCCCCcccccccccccCCCCeEEeCCC-----ChhhHhhHHHHHhcC-CCCCccccCcCCCCCCC
Q 031525 93 HCEDAEHDCSVCLTEFEPQSDINNLSCG-----HLFHKVCLEKWLDYL-NVTCPLCRTPLIPEFED 152 (158)
Q Consensus 93 ~~~~~~~~C~iCl~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~-~~~CP~Cr~~~~~~~~~ 152 (158)
....++..|.||++++++++.. .+||+ |.||..||++|+... +.+||+||+.+..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 3356678999999999766554 68996 999999999999752 25899999998765443
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.43 E-value=4.4e-14 Score=88.23 Aligned_cols=55 Identities=27% Similarity=0.629 Sum_probs=45.4
Q ss_pred CCCCcccccccccccC----CCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031525 95 EDAEHDCSVCLTEFEP----QSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~----~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
.+++..|+||++.+.+ +..++.++|+|.||..|+.+|++ .+.+||+||+.+....
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH-cCCCCCCCCCccChhh
Confidence 4566899999999853 23457889999999999999998 4789999999987543
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=86.05 Aligned_cols=55 Identities=22% Similarity=0.432 Sum_probs=45.7
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDP 154 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~ 154 (158)
.++..|+||++.+ ..+..+ +|+|.||..||.+|++ .+..||+||+.+.......+
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 13 TPYILCSICKGYL---IDATTITECLHTFCKSCIVRHFY-YSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CGGGSCTTTSSCC---SSCEECSSSCCEECHHHHHHHHH-HCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCCChHH---HCcCEECCCCCHHHHHHHHHHHH-cCCcCCCcCcccCccccccc
Confidence 4567999999999 446666 8999999999999998 48899999999977655443
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=6.3e-14 Score=86.91 Aligned_cols=53 Identities=28% Similarity=0.660 Sum_probs=43.8
Q ss_pred CCCCcccccccccccCC----CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 95 EDAEHDCSVCLTEFEPQ----SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~----~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
..++..|+||++.+.+. ..+..++|+|.||..||.+|++ .+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH-HCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH-cCCCCCCCCCccCc
Confidence 34567999999999532 3347789999999999999998 48899999998764
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.42 E-value=6.9e-14 Score=85.48 Aligned_cols=52 Identities=31% Similarity=0.680 Sum_probs=43.5
Q ss_pred CCcccccccccccCC----CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 97 AEHDCSVCLTEFEPQ----SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~----~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
++..|+||++.+.+. ..+..++|+|.||..|+.+|++ .+.+||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH-HCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH-cCCCCCCCCccCCcc
Confidence 457999999999532 3457889999999999999998 488999999988764
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.41 E-value=1.7e-13 Score=92.57 Aligned_cols=52 Identities=23% Similarity=0.578 Sum_probs=42.9
Q ss_pred CCCCcccccccccccCCC---------------CeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 95 EDAEHDCSVCLTEFEPQS---------------DINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~---------------~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
..+++.|+||++.|.+.. .++.++|+|.||..||++|+. .+.+||+||+.+.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 345689999999996431 256679999999999999998 5899999999853
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.9e-14 Score=88.34 Aligned_cols=51 Identities=25% Similarity=0.584 Sum_probs=44.2
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
..++..|+||++.+ ..++.++|+|.||..|+.+|+. .+.+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTC---VHPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBC---SSEEEETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCccc---CCCEEccCCCHHHHHHHHHHHH-CCCcCcCcCchhCHh
Confidence 34567999999998 5678889999999999999998 578999999988653
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=84.15 Aligned_cols=52 Identities=19% Similarity=0.572 Sum_probs=43.3
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
..++..|+||++.+ ..+..++|+|.||..|+.+|++.....||+||+.+..+
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL---CSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEE---SSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHh---cCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34567999999999 45566899999999999999964567899999988654
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.39 E-value=1.6e-13 Score=85.07 Aligned_cols=50 Identities=34% Similarity=0.851 Sum_probs=42.5
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
+.+..|+||++.+. +..+.++|+|.||..|+.+|++ .+.+||+||+.+..
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHh
Confidence 45679999999984 3357889999999999999998 47899999998864
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.7e-13 Score=84.00 Aligned_cols=52 Identities=27% Similarity=0.586 Sum_probs=43.8
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc--CCCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY--LNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~~CP~Cr~~~~~~ 149 (158)
..++..|+||++.+ ..+..++|+|.||..|+.+|++. ....||+||+.+..+
T Consensus 17 ~~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBC---SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCccc---CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 34567999999999 57788899999999999999962 356899999988664
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=7.5e-13 Score=85.84 Aligned_cols=55 Identities=29% Similarity=0.610 Sum_probs=45.1
Q ss_pred CCCCcccccccccccCCCC-eEEeCCCChhhHhhHHHHHhcC--CCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSD-INNLSCGHLFHKVCLEKWLDYL--NVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~-~~~l~C~H~fh~~Ci~~w~~~~--~~~CP~Cr~~~~~~ 149 (158)
..++..|+||++.+.+++. ++.++|+|.||..|+.+|++.. ...||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3456799999999965443 8888999999999999999853 37899999987554
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.7e-13 Score=85.45 Aligned_cols=51 Identities=31% Similarity=0.797 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
..++..|+||++.+. . +.++|+|.||..|+.+|+. .+.+||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~---~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRA---D-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCC---S-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCcc---C-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 345679999999984 3 7889999999999999998 6899999999887543
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.9e-13 Score=85.40 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=42.9
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
......|+||++.+ ..+..++|+|.||..|+.+|++ ...+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF---QNPVVTKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC---CSEEECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchh---cCeeEccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 34457999999999 5677899999999999999998 4889999999885
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.35 E-value=8.2e-13 Score=84.02 Aligned_cols=52 Identities=25% Similarity=0.481 Sum_probs=44.9
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
..++..|+||++.| ..++.++|||.||..||.+|+...+.+||+||+.+...
T Consensus 5 ~~~~~~C~IC~~~~---~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCC---SSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccc---cCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 35568999999999 67888999999999999999984478899999988654
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.34 E-value=3.5e-13 Score=94.98 Aligned_cols=48 Identities=29% Similarity=0.879 Sum_probs=42.4
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
++..|+||++.+ ..++.++|||.||..||..|+. .+.+||+||+.+..
T Consensus 52 ~~~~C~iC~~~~---~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBC---SSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC
T ss_pred ccCCCcccCccc---CCceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC
Confidence 346899999999 5788899999999999999998 58899999998854
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.34 E-value=6.9e-13 Score=83.78 Aligned_cols=50 Identities=24% Similarity=0.518 Sum_probs=42.0
Q ss_pred CCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcC-CCCCccccCcCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYL-NVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~-~~~CP~Cr~~~~~ 148 (158)
.++..|+||++.+ ..++.++ |+|.||..||.+|++.. ..+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCC---TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHH---hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4567999999999 5678899 99999999999999742 2689999998654
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.33 E-value=4.5e-13 Score=89.48 Aligned_cols=50 Identities=28% Similarity=0.722 Sum_probs=42.9
Q ss_pred CCCcccccccccccCCCCeEE-eCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINN-LSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~-l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
.++..|+||++.+ ..++. ++|+|.||..||.+|+...+.+||+||+.+..
T Consensus 20 ~~~~~C~IC~~~~---~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKL---RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccc---cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3457999999999 56777 89999999999999998544799999999854
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=1.6e-12 Score=79.96 Aligned_cols=53 Identities=26% Similarity=0.527 Sum_probs=42.0
Q ss_pred CCcccccccc-cccCCCCe-EEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 97 AEHDCSVCLT-EFEPQSDI-NNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 97 ~~~~C~iCl~-~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
++..|+||++ .+.+.... ..++|||.||..|+.+|+......||+||+.+..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 3568999999 77544332 45799999999999999875567899999988654
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.8e-12 Score=82.35 Aligned_cols=53 Identities=32% Similarity=0.688 Sum_probs=43.9
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc-----CCCCCccccCcCCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY-----LNVTCPLCRTPLIPEF 150 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-----~~~~CP~Cr~~~~~~~ 150 (158)
..++..|+||++.+ ..+..++|+|.||..|+..|+.. ....||+||..+....
T Consensus 16 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELL---TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCC---SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCccc---CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 34567999999999 45677899999999999999974 2678999999987643
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.28 E-value=2.6e-12 Score=88.81 Aligned_cols=50 Identities=24% Similarity=0.451 Sum_probs=43.3
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
.++..|+||++.+ ..++.++|||.||..||..|+......||+||..+..
T Consensus 50 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELV---FRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHH---cCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3457899999999 5788899999999999999998545589999999866
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=3.1e-12 Score=82.16 Aligned_cols=51 Identities=25% Similarity=0.628 Sum_probs=43.3
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC-----CCCCccccCcCCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL-----NVTCPLCRTPLIPE 149 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----~~~CP~Cr~~~~~~ 149 (158)
.++..|+||++.+ ..+..++|+|.||..|+..|+... ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL---KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC---SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhh---CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4567999999999 566789999999999999999842 66899999998754
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=77.89 Aligned_cols=45 Identities=29% Similarity=0.637 Sum_probs=38.3
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc--CCCCCccc
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY--LNVTCPLC 142 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~~CP~C 142 (158)
..++..|+||++.+ .+++.++|+|.||..||.+|++. .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBC---SSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchh---CCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35567999999999 56788899999999999999974 35689998
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.27 E-value=7.1e-13 Score=84.32 Aligned_cols=52 Identities=25% Similarity=0.597 Sum_probs=43.4
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC------CCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL------NVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~------~~~CP~Cr~~~~~~ 149 (158)
..++..|+||++.+ ..++.++|+|.||..|+.+|++.. ...||+||..+...
T Consensus 9 ~~~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELL---TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEEC---SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCccc---CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 35568999999999 456778999999999999999742 56899999998654
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.26 E-value=6.1e-13 Score=91.31 Aligned_cols=52 Identities=23% Similarity=0.579 Sum_probs=2.0
Q ss_pred CCCCcccccccccccCC-------------C--CeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 95 EDAEHDCSVCLTEFEPQ-------------S--DINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~-------------~--~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
...++.|+||++.|++. + .+..++|+|.||..||++|++ .+.+||+||+.+.
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 111 (117)
T ss_dssp CCCC----------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence 34568999999999642 2 122348999999999999998 5889999999854
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.25 E-value=5.6e-12 Score=82.54 Aligned_cols=50 Identities=24% Similarity=0.497 Sum_probs=42.3
Q ss_pred CCCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcC-CCCCccccCcCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYL-NVTCPLCRTPLI 147 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~-~~~CP~Cr~~~~ 147 (158)
..++..|+||++.| ..++.++ |+|.||..||.+|+... ...||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEEC---SSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhh---cCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34568999999999 5778899 99999999999999642 368999999873
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.25 E-value=3e-12 Score=85.09 Aligned_cols=48 Identities=23% Similarity=0.674 Sum_probs=41.8
Q ss_pred CCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
++..|+||++.+ ..++.+ +|||.||..|+.+|+. .+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYF---NIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCCcccCChhh---CCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 346999999999 457777 8999999999999998 57899999998865
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.25 E-value=4.9e-12 Score=85.34 Aligned_cols=50 Identities=26% Similarity=0.669 Sum_probs=43.4
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
.++..|+||++.+ ..+..+ +|||.||..||..|+. .+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYF---IDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHH---hCcCEeCCCCChhhHHHHHHHHH-hCCcCcCCCcccccc
Confidence 4567999999999 567777 9999999999999998 578999999988754
No 37
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=5.1e-12 Score=79.86 Aligned_cols=57 Identities=25% Similarity=0.512 Sum_probs=44.7
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCC--CCCccccCcCCCCCCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLN--VTCPLCRTPLIPEFEDDP 154 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~--~~CP~Cr~~~~~~~~~~~ 154 (158)
.+....|+||.+.+..+... ..|+|.||..||.+|++. + .+||+||+....+.++.+
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~-~~~~~CP~Cr~~w~~~~~~~~ 70 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWPHEIPKSG 70 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTT-CSSCCCTTTCSCCCSCCCCCC
T ss_pred cCCCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHh-cCCCCCCCCcCcCCCCCCCCC
Confidence 34457999999999755333 279999999999999984 4 789999999876655543
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=3.7e-12 Score=88.25 Aligned_cols=54 Identities=28% Similarity=0.653 Sum_probs=44.5
Q ss_pred CCCCcccccccccccCC----CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQ----SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~----~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
..++..|+||++.+.+. ..++.++|||.||..||.+|++ .+.+||+||+.+...
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHK 61 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTTT
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCccc
Confidence 34567999999999532 3448889999999999999998 578999999988654
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.7e-12 Score=75.79 Aligned_cols=45 Identities=36% Similarity=0.922 Sum_probs=37.3
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc--CCCCCccc
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY--LNVTCPLC 142 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~~CP~C 142 (158)
..++..|+||++.+ ..++.++|+|.||..||.+|++. .+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYL---KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBC---SSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCccc---CccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567999999999 45677899999999999999653 46789998
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.20 E-value=8.3e-12 Score=89.24 Aligned_cols=50 Identities=24% Similarity=0.431 Sum_probs=43.5
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
++..|+||++.+ ..++.++|+|.||..||..|+......||+||..+...
T Consensus 77 ~~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELV---YQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhh---cCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457999999999 57788999999999999999985445899999998765
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.19 E-value=1.2e-11 Score=84.85 Aligned_cols=52 Identities=25% Similarity=0.614 Sum_probs=44.3
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
..++..|+||++.+ ..++.++|+|.||..||.+|+.....+||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhh---cCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 45668999999999 56788899999999999999985445999999988653
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.18 E-value=9.7e-12 Score=89.91 Aligned_cols=49 Identities=31% Similarity=0.619 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
++..|+||++.+ ..++.+ +|+|.||..||..|+...+..||+||..+..
T Consensus 53 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDML---KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHh---hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 446999999999 456666 8999999999999998447889999998853
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.1e-11 Score=83.72 Aligned_cols=51 Identities=27% Similarity=0.692 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCC--CCCccccCcCCCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLN--VTCPLCRTPLIPEF 150 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~--~~CP~Cr~~~~~~~ 150 (158)
+...|+||++.+ ..+..++|+|.||..|+..|+.... ..||+||..+....
T Consensus 20 ~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCC---SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhh---cCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 346999999999 4566789999999999999998422 48999999887643
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.17 E-value=2.4e-12 Score=87.78 Aligned_cols=49 Identities=24% Similarity=0.685 Sum_probs=42.6
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
.++..|+||++.+ ..++.++|+|.||..||.+|+...+..||+||..+.
T Consensus 13 ~~~~~C~iC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEIL---VEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBC---SSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCccc---CceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3457999999999 577888999999999999999744678999999875
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.16 E-value=1.3e-11 Score=84.16 Aligned_cols=49 Identities=33% Similarity=0.806 Sum_probs=43.0
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
+..|+||++.+ ..+..++|||.||..||.+|+...+.+||+||..+...
T Consensus 23 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHh---cCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 46999999999 56778999999999999999985477899999998654
No 46
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.14 E-value=1.5e-11 Score=87.07 Aligned_cols=51 Identities=25% Similarity=0.434 Sum_probs=43.5
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
..++..|+||++.+ ..++.++|||.||..||.+|++....+||+||..+..
T Consensus 28 l~~~~~C~IC~~~~---~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVL---RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhh---cCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 46678999999999 5678899999999999999998545689999997643
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=1.1e-11 Score=85.75 Aligned_cols=54 Identities=28% Similarity=0.659 Sum_probs=44.6
Q ss_pred CCCCcccccccccccC----CCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEP----QSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~----~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
.+++..|+||++.+.+ +...+.++|+|.||..|+++|++ .+.+||+||+.+..+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-cCCCCCCCCCcCChh
Confidence 3556799999999853 23347889999999999999998 488999999998654
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.12 E-value=4.6e-11 Score=76.27 Aligned_cols=54 Identities=28% Similarity=0.671 Sum_probs=42.1
Q ss_pred CCCCcccccccccccCCCCeEEeC--CCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLS--CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~--C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
.+++..|+||++.+... .+..+| |||.||..|+..++......||.||+.+...
T Consensus 8 ~~~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 35667999999998532 233444 9999999999999864567899999988654
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.12 E-value=3.7e-11 Score=97.45 Aligned_cols=52 Identities=27% Similarity=0.674 Sum_probs=44.3
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
......|+||++.+ ..++.+||+|.||..|+..|+...+.+||+||+.+...
T Consensus 329 ~~~~~~C~ICle~~---~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 329 GSTFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp TTSSSBCTTTSSSB---CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred cCCCCCCCccCcCC---CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34457999999998 67888999999999999999974578999999988653
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=2.4e-11 Score=72.68 Aligned_cols=49 Identities=29% Similarity=0.493 Sum_probs=40.5
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
..++..|+||++.+ ..++.++|+|.||..|+..| ...||+||+.+....
T Consensus 3 e~~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 3 EFQFLRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA 51 (56)
T ss_dssp SCCCSSCSSSCSSC---BCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred cccCCCceEeCCcc---CCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecCC
Confidence 35567999999999 46788999999999998873 568999999886543
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.05 E-value=1e-10 Score=75.83 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=43.8
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
.++..|+||++.| ..++.++|||.|++.||.+|+. .+.+||+||..+..
T Consensus 12 p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLM---TDPVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred chheECcccCchh---cCCeECCCCCEECHHHHHHHHh-cCCCCCCCcCCCCh
Confidence 3467999999999 6889999999999999999998 47899999998764
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.04 E-value=9.2e-11 Score=72.02 Aligned_cols=48 Identities=29% Similarity=0.576 Sum_probs=40.6
Q ss_pred CCCcccccccccccCCCCeEEe--CCCCh-hhHhhHHHHHhcCCCCCccccCcCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL--SCGHL-FHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l--~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
.++..|.||++.. .....+ ||||. |+..|+.+|.+ .+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP---KNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC---SCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCC---CCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchh
Confidence 4567999999987 455655 99999 89999999998 5789999999875
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.04 E-value=1.4e-10 Score=77.47 Aligned_cols=50 Identities=20% Similarity=0.192 Sum_probs=44.5
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
.++..|+||++.| ..++.++|||.|++.||.+|+. .+.+||+||.++...
T Consensus 27 p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLM---TDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBC---SSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcc---cCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChh
Confidence 4567999999999 7889999999999999999998 588999999988653
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.02 E-value=2.7e-10 Score=75.73 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=44.2
Q ss_pred CCCcccccccccccCCCCeEEeCCC-ChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLSCG-HLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~-H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
.++..|+||++.| ..++.++|| |.|++.||.+|+. .+.+||+||..+...
T Consensus 20 p~~~~CpI~~~~m---~dPV~~~cG~htf~r~cI~~~l~-~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTT-TSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccc---cCCeECCCCCeEECHHHHHHHHH-hCCCCCCCCCCCChh
Confidence 3457999999999 788999999 9999999999998 478999999988653
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.98 E-value=2.3e-10 Score=70.03 Aligned_cols=49 Identities=24% Similarity=0.518 Sum_probs=40.4
Q ss_pred CCCcccccccccccCCCCeEEe--CCCCh-hhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL--SCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l--~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
+.+..|.||++.. .....+ ||||. |+..|+.+|.+ .+..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRP---RDGNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSB---SCEEEEETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcC---CCeEEEecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 4457999999987 445555 99998 99999999997 57899999998753
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=8.9e-11 Score=80.26 Aligned_cols=46 Identities=28% Similarity=0.650 Sum_probs=40.2
Q ss_pred CCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
++..|+||++.+ ..++.+ +|||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~---~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNIL---REPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCC---SSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred hCCCCCCCChHh---hCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence 457999999999 567777 8999999999999985 789999998854
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.95 E-value=3.4e-10 Score=82.07 Aligned_cols=52 Identities=25% Similarity=0.614 Sum_probs=44.6
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
..++..|+||++.+ ..++.++|||.||..|+.+|+.....+||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhh---cCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 45678999999999 56788999999999999999975456999999988653
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.94 E-value=1.9e-10 Score=72.52 Aligned_cols=44 Identities=34% Similarity=0.685 Sum_probs=38.3
Q ss_pred CCcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
++..|+||++.+ ..+..+||+|. ||..|+..| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSB---CCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCC---CCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 346999999998 67888999999 999999987 679999998754
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=5.8e-10 Score=86.07 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=43.7
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
.....|+||++.| ..++.++|||+||+.||.+|+...+.+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~---~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBC---SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHh---cCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4567999999999 7889999999999999999998545569999998864
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=2e-09 Score=70.82 Aligned_cols=48 Identities=17% Similarity=0.486 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcC-----CCCCcc--ccCc
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYL-----NVTCPL--CRTP 145 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~-----~~~CP~--Cr~~ 145 (158)
...+..|+||++.| ..++.++ |||.|++.||.+|+... ..+||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~---~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEM---KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBC---SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchh---cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34567999999999 6788896 99999999999999742 358999 9865
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.79 E-value=3.1e-09 Score=77.85 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=43.9
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
......|+||++.| ..++.++|||+|++.||..|+...+.+||+||.++..
T Consensus 103 ip~~f~CPI~~elm---~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccC---CCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 34568999999999 6789999999999999999997534579999998864
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.79 E-value=6.8e-10 Score=88.35 Aligned_cols=54 Identities=30% Similarity=0.624 Sum_probs=41.2
Q ss_pred CCCcccccccccccC-CCCeE----EeCCCChhhHhhHHHHHhcCC----------CCCccccCcCCCC
Q 031525 96 DAEHDCSVCLTEFEP-QSDIN----NLSCGHLFHKVCLEKWLDYLN----------VTCPLCRTPLIPE 149 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~-~~~~~----~l~C~H~fh~~Ci~~w~~~~~----------~~CP~Cr~~~~~~ 149 (158)
+...+|+||++.+.+ ++.+. ..+|+|.||..|+.+|++... .+||+||+++..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456799999999976 43332 246999999999999997411 3699999988654
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.77 E-value=5.8e-09 Score=63.13 Aligned_cols=50 Identities=26% Similarity=0.632 Sum_probs=38.2
Q ss_pred CCCCcccccccccccCCCCeEEeCCC--C---hhhHhhHHHHHhc-CCCCCccccCcCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCG--H---LFHKVCLEKWLDY-LNVTCPLCRTPLI 147 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~--H---~fh~~Ci~~w~~~-~~~~CP~Cr~~~~ 147 (158)
.++...|.||++.. ++ ...+||. + .||..|+.+|+.. .+.+||+|+..+.
T Consensus 3 ~~~~~~CrIC~~~~--~~-~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEEL--GN-ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEEC--SC-CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCC--CC-ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34567999999874 22 3457855 4 9999999999974 3578999998775
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2e-09 Score=67.90 Aligned_cols=44 Identities=34% Similarity=0.697 Sum_probs=37.1
Q ss_pred CcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 98 EHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
+..|+||++.+ ..+..+||+|. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~---~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRN---IAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSC---CCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCC---CCEEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 46899999998 56778899999 99999954 47899999988653
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=5.4e-09 Score=64.81 Aligned_cols=46 Identities=28% Similarity=0.624 Sum_probs=38.8
Q ss_pred CCCCcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
..++..|.||++.. ..+..+||+|. ||..|+.. ...||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 45567999999887 67888999999 99999884 4789999998854
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.63 E-value=5.3e-09 Score=66.71 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=36.9
Q ss_pred CcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 98 EHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
+..|.||++.+ ..+..+||||. ||..|+..| ..||+||+.+..
T Consensus 18 ~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE---INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB---CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCEeEEeCccc---CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 46899999988 67888999999 999998875 379999998754
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=1.6e-08 Score=66.26 Aligned_cols=50 Identities=24% Similarity=0.737 Sum_probs=37.7
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC-------CCCCcc--ccCc
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL-------NVTCPL--CRTP 145 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-------~~~CP~--Cr~~ 145 (158)
++...|+||++.+.........+|+|.||..|+..++..+ ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3457899999998543333334799999999999998631 247999 9987
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.49 E-value=2.6e-08 Score=79.90 Aligned_cols=44 Identities=30% Similarity=0.747 Sum_probs=38.5
Q ss_pred CCcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
++..|+||++.+ ..+..+||||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~---~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKE---VSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSB---CCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcC---CceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 457999999998 67888999999 999999987 579999998754
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.45 E-value=1.1e-07 Score=62.61 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=39.9
Q ss_pred ccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
.|++|--++. ...|.+||+|+||.+|+..|.++...+||.|+..+..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888888874 5678889999999999999987567899999998864
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.44 E-value=8.2e-08 Score=73.91 Aligned_cols=50 Identities=18% Similarity=0.447 Sum_probs=40.2
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcC-CCCCcc--ccCcCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYL-NVTCPL--CRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~-~~~CP~--Cr~~~~~ 148 (158)
..+..|+||++.| ..++.. .|||.|++.||..|+... ..+||+ ||..+..
T Consensus 179 ~~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3457999999999 566654 899999999999999742 357999 9987654
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.38 E-value=9.9e-08 Score=57.82 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=40.9
Q ss_pred cccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 99 HDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
..|+|+++.+ .+++.+ ++||+|.+.||.+|++. +.+||+.+.++..+
T Consensus 4 ~~CpIs~~~m---~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVP---RRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCC---SSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGG
T ss_pred EEecCCCCCC---CCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChh
Confidence 5899999999 577888 89999999999999984 67899999988543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.69 E-value=2.5e-05 Score=59.46 Aligned_cols=53 Identities=23% Similarity=0.515 Sum_probs=40.4
Q ss_pred CCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcC-CCCCccccCcCCCCCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYL-NVTCPLCRTPLIPEFED 152 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~-~~~CP~Cr~~~~~~~~~ 152 (158)
.-..|.+|.+....| ..- .|+|.||..|+..|++.. +..||.|+.......++
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 357899999998644 233 399999999999999742 34899999887655443
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.07 E-value=0.029 Score=36.31 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=24.5
Q ss_pred CcccccccccccCCCCeEE--eCCCChhhHhhHHHH
Q 031525 98 EHDCSVCLTEFEPQSDINN--LSCGHLFHKVCLEKW 131 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~--l~C~H~fh~~Ci~~w 131 (158)
+..|.+|.+.+. ..... +.|+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHH
Confidence 468999997642 23333 789999999999983
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.61 E-value=0.056 Score=32.66 Aligned_cols=50 Identities=22% Similarity=0.400 Sum_probs=34.0
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCC---CCCccccCcCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLN---VTCPLCRTPLIP 148 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~---~~CP~Cr~~~~~ 148 (158)
...+..|.||.+. .+...- .|...||..|++..+...- =.||.|++...+
T Consensus 9 ~~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 9 LAPGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CCTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 3455789999743 233333 5999999999988776321 259999765443
No 75
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.00 E-value=0.028 Score=33.51 Aligned_cols=52 Identities=17% Similarity=0.389 Sum_probs=35.0
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHh----cCCCCCccccCcC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD----YLNVTCPLCRTPL 146 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~----~~~~~CP~Cr~~~ 146 (158)
..++..|++|...+.++...+.- .|...||..|+.--.. .....||.|+..-
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 35567899999887544444444 5999999999854221 1345799997643
No 76
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=87.58 E-value=0.21 Score=36.22 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=33.2
Q ss_pred cccccccccccCCCC---eEEe-CCCChhhHhhHHHH------Hh----cCCCCCccccCcC
Q 031525 99 HDCSVCLTEFEPQSD---INNL-SCGHLFHKVCLEKW------LD----YLNVTCPLCRTPL 146 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~---~~~l-~C~H~fh~~Ci~~w------~~----~~~~~CP~Cr~~~ 146 (158)
..|+||...+.+++. .+.- .|...||..|+.-- +. .....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 569999999976653 4444 49999999997321 11 0156899998754
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.35 E-value=0.12 Score=31.70 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=35.1
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc---CCCCCccccCcCCCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY---LNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~~~~~~ 149 (158)
..+...|.+|.... +++..+.- .|...||..|+..-... ..-.||.|+..+...
T Consensus 15 ~~~~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 15 GNQIWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp SCEEECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCCcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 44556799998775 23333333 59999999998754331 134599997765443
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=86.90 E-value=0.51 Score=42.35 Aligned_cols=50 Identities=22% Similarity=0.153 Sum_probs=42.9
Q ss_pred CCCcccccccccccCCCCeEEeCCC-ChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLSCG-HLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~-H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
-+...|+|-++.| ..++.+|.| +++-+..|.+|+. .+.+||+=|.++...
T Consensus 889 P~~F~cPIs~~lM---~DPVilpsG~~TydR~~I~~wl~-~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIM---KDPVILPASKMNIDRSTIKAHLL-SDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHH---hCCeEcCCCCEEECHHHHHHHHh-cCCCCCCCCCCCCcc
Confidence 3456899999999 789999987 6999999999998 488999999988653
No 79
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.33 E-value=1.3 Score=27.18 Aligned_cols=50 Identities=18% Similarity=0.375 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHh----cCCCCCccccCcC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD----YLNVTCPLCRTPL 146 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~----~~~~~CP~Cr~~~ 146 (158)
.+...| +|.....++...+.- .|...||..|+.---. .....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 334566 898876433344444 4999999999842211 1356799998654
No 80
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=84.71 E-value=0.75 Score=26.01 Aligned_cols=44 Identities=20% Similarity=0.441 Sum_probs=27.9
Q ss_pred ccccccccccCCCCeEEe--CCCChhhHhhHHHHH---hcCCCCCcccc
Q 031525 100 DCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWL---DYLNVTCPLCR 143 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~---~~~~~~CP~Cr 143 (158)
.|.+|...+.++...+.- .|...||..|+.--. ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 577888887544444333 388899999974211 12467799885
No 81
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=84.23 E-value=0.51 Score=30.42 Aligned_cols=48 Identities=27% Similarity=0.663 Sum_probs=37.0
Q ss_pred CCcccccccccccCCCCeEEeCCC-ChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCG-HLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~-H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
+-..|-.|.-.. . ..+.|. |..|..|+..-+. ....||+|..+++...
T Consensus 27 G~~nCKsCWf~~---k--~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFEN---K--GLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCC---S--SEEECSSCEEEHHHHHHTCS-SSSEETTTTEECCCCS
T ss_pred CcccChhhcccc---C--CeeeecchhhHHHHHHHHHh-hccCCcccCCcCCcce
Confidence 336899898654 1 345665 9999999999887 6889999999987653
No 82
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.41 E-value=0.86 Score=27.18 Aligned_cols=34 Identities=29% Similarity=0.680 Sum_probs=23.7
Q ss_pred CCCCcccccccccccCCCCeEEe--CCCChhhHhhH
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL--SCGHLFHKVCL 128 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci 128 (158)
......|.+|..++.++...+.- .|...||..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 34557899999998655444444 59999999997
No 83
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.88 E-value=0.47 Score=29.04 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=30.8
Q ss_pred CcccccccccccCCCCeEEe-CCCChhhHhhHHHHH--------hcCCCCCccccCcCCC
Q 031525 98 EHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWL--------DYLNVTCPLCRTPLIP 148 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~--------~~~~~~CP~Cr~~~~~ 148 (158)
...| +|..... +...+.- .|...||..|+.--. ......||.|+..-.+
T Consensus 16 ~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 3566 8988764 2233333 599999999983211 1246789999765433
No 84
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=81.01 E-value=0.45 Score=33.74 Aligned_cols=48 Identities=21% Similarity=0.499 Sum_probs=31.2
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHh----cCCCCCccccC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD----YLNVTCPLCRT 144 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~----~~~~~CP~Cr~ 144 (158)
.+...| +|.....++.....- .|...||..|+.--.. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 455688 999886433334444 4999999999842211 13457999975
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.41 E-value=0.6 Score=26.17 Aligned_cols=44 Identities=30% Similarity=0.585 Sum_probs=27.2
Q ss_pred ccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc---CCCCCccccC
Q 031525 100 DCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY---LNVTCPLCRT 144 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~ 144 (158)
.|.||...-.. +....- .|...||..|+++=+.. ..-.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 57888865322 233333 59999999999753332 1224998864
No 86
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=79.84 E-value=1.2 Score=28.15 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=23.3
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHH
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKW 131 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w 131 (158)
...|..|.||--. ..++...---|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccc-cccceeccccccccccHhhcccc
Confidence 3467899999743 22221111138899999999985
No 87
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=78.09 E-value=0.69 Score=27.14 Aligned_cols=46 Identities=28% Similarity=0.662 Sum_probs=30.9
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc---CCCCCccccC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY---LNVTCPLCRT 144 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~ 144 (158)
...+..|.+|... .....- .|...||..|+..-+.. ..-.||.|+.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3556789999863 233333 59999999999874432 1225999965
No 88
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=77.81 E-value=1.1 Score=26.46 Aligned_cols=52 Identities=19% Similarity=0.530 Sum_probs=32.8
Q ss_pred CCCCcccccccccccCC-CCeEEe-CCCChhhHhhHHHHHh------cCCCCCccccCcC
Q 031525 95 EDAEHDCSVCLTEFEPQ-SDINNL-SCGHLFHKVCLEKWLD------YLNVTCPLCRTPL 146 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~-~~~~~l-~C~H~fh~~Ci~~w~~------~~~~~CP~Cr~~~ 146 (158)
..++..|.||.....+. ..+..- .|...||..|+..=+. ...-.|+.|+...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45668999999764222 223332 5999999999875321 1233599986543
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=77.69 E-value=0.66 Score=33.96 Aligned_cols=48 Identities=27% Similarity=0.478 Sum_probs=32.2
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc---CCCCCccccCcC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY---LNVTCPLCRTPL 146 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~~~ 146 (158)
...+..|.+|... | ....- .|...||..|+.+-+.. ..-.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4566789999843 2 23223 49999999999775542 123599998754
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.45 E-value=0.68 Score=33.16 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=31.6
Q ss_pred CCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc---CCCCCccccCcCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY---LNVTCPLCRTPLI 147 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~~~~ 147 (158)
.++.|.+|... |+ ...- .|...||..|+.+-+.. ..-.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45789999843 33 3333 59999999998775542 1235999987543
No 91
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=75.16 E-value=0.46 Score=27.92 Aligned_cols=49 Identities=24% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc---CCCCCccccCcC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY---LNVTCPLCRTPL 146 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~~~ 146 (158)
...+..|.+|... ++.+.--.|...||..|+..-+.. ..-.||.|+...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4556789999853 222222259999999998864432 122499997643
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.95 E-value=1.2 Score=28.23 Aligned_cols=47 Identities=26% Similarity=0.495 Sum_probs=31.6
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc---CCCCCccccCc
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY---LNVTCPLCRTP 145 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~~ 145 (158)
...+..|.+|... ++ ...- .|.-.||..|+.+=+.. ..-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4556799999954 33 3333 59999999999775532 11249999754
No 93
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.83 E-value=0.52 Score=28.59 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHh---cCCCCCccccCcCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD---YLNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~---~~~~~CP~Cr~~~~~ 148 (158)
.+...| +|.....+++..+.- .|...||..|+.---. .....||.|+..-.+
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 344578 698776444434444 5999999999854211 124569999765433
No 94
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.19 E-value=12 Score=23.76 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=37.0
Q ss_pred CCccccccccccc---CCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 97 AEHDCSVCLTEFE---PQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~---~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
....|.||-+... +|+.-+.- .|+-..|+.|++-=.+..+..||-|+..+.+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4469999998863 22211122 4787889999987666678899999988864
No 95
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=71.47 E-value=2.2 Score=27.86 Aligned_cols=49 Identities=24% Similarity=0.428 Sum_probs=32.5
Q ss_pred CcccccccccccCCCCeEEe--CCCChhhHhhHHHHH---h------cCCCCCccccCcC
Q 031525 98 EHDCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWL---D------YLNVTCPLCRTPL 146 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~---~------~~~~~CP~Cr~~~ 146 (158)
...|.+|...+.+......- .|...||..|+.--- + .....||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 35799999997544444444 489999999983211 0 0245699997654
No 96
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.30 E-value=1 Score=27.75 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=29.5
Q ss_pred CCcccccccccccCCCCeEEe---CCCChhhHhhHHHHHhc--------CCCCCccccCcC
Q 031525 97 AEHDCSVCLTEFEPQSDINNL---SCGHLFHKVCLEKWLDY--------LNVTCPLCRTPL 146 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l---~C~H~fh~~Ci~~w~~~--------~~~~CP~Cr~~~ 146 (158)
+...| ||-.....+ ..+.- .|...||..|+.---.. .+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 44577 788774333 22222 49999999998532110 245699997643
No 97
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=70.36 E-value=1 Score=29.44 Aligned_cols=49 Identities=22% Similarity=0.575 Sum_probs=30.2
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc---CCCCCcccc
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY---LNVTCPLCR 143 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---~~~~CP~Cr 143 (158)
..+++.|.+|.+.-+.++-+.=-.|...||..|+...... ..-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567899999876321111222259999999999876531 122366654
No 98
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=70.10 E-value=4.9 Score=24.22 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=31.0
Q ss_pred CCCCcccccccccc-cCCCCeEEe-CCCChhhHhhHHHHHh-cCCCCCccccC
Q 031525 95 EDAEHDCSVCLTEF-EPQSDINNL-SCGHLFHKVCLEKWLD-YLNVTCPLCRT 144 (158)
Q Consensus 95 ~~~~~~C~iCl~~~-~~~~~~~~l-~C~H~fh~~Ci~~w~~-~~~~~CP~Cr~ 144 (158)
...+..|.||...- .+++....- .|.-.||..|+..-.. ...=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45678999998753 122233333 5999999999875211 01224888854
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=69.47 E-value=4 Score=28.18 Aligned_cols=46 Identities=20% Similarity=0.473 Sum_probs=31.7
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHh----------cCCCCCccccC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD----------YLNVTCPLCRT 144 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~----------~~~~~CP~Cr~ 144 (158)
...++.|.+|.+. |+ +.-- .|-..||..|+.+=+. ...=.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4566899999954 23 3333 5999999999996542 12335999964
No 100
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.58 E-value=0.44 Score=27.42 Aligned_cols=47 Identities=28% Similarity=0.518 Sum_probs=29.7
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc---CCCCCccccC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY---LNVTCPLCRT 144 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~ 144 (158)
...+..|.+|... ++.+.--.|...||..|+.+-+.. ..-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4556789999864 232222259999999998864432 1124888753
No 101
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=67.84 E-value=1.1 Score=28.91 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=28.0
Q ss_pred cccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc--CCCCCccccC
Q 031525 99 HDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY--LNVTCPLCRT 144 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~--~~~~CP~Cr~ 144 (158)
..| ||-.....+ ..+.- .|...||..|+..=... ..-.||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 567 787765433 33333 59999999998653221 1346999964
No 102
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=67.80 E-value=0.33 Score=28.38 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=30.7
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc---CCCCCccccCcC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY---LNVTCPLCRTPL 146 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~~~ 146 (158)
..+..|.+|... + ....- .|...||..|+.+=+.. ..-.||.|+...
T Consensus 3 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 346789999864 3 33333 59999999999864432 122499986544
No 103
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=65.51 E-value=5.4 Score=25.06 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=32.3
Q ss_pred CCCCccccccccccc-CCCCeEEe-CCCChhhHhhHHHHHh-cCCCCCccccCcCCC
Q 031525 95 EDAEHDCSVCLTEFE-PQSDINNL-SCGHLFHKVCLEKWLD-YLNVTCPLCRTPLIP 148 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~-~~~~~~~l-~C~H~fh~~Ci~~w~~-~~~~~CP~Cr~~~~~ 148 (158)
..++..|.||...-. +++....- .|.-.||..|+..-.. ...-.||.|......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 345679999996531 11122222 5999999999875321 012349999765433
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=64.54 E-value=0.96 Score=27.19 Aligned_cols=47 Identities=19% Similarity=0.461 Sum_probs=29.4
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc--CCCCCccccC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY--LNVTCPLCRT 144 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~--~~~~CP~Cr~ 144 (158)
.+...| +|..... ++..+.- .|...||..|+.---.. ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 444677 8987753 3333333 49999999998542210 2356998864
No 105
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=64.20 E-value=2.1 Score=25.05 Aligned_cols=42 Identities=24% Similarity=0.536 Sum_probs=27.5
Q ss_pred cccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccc
Q 031525 99 HDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLC 142 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~C 142 (158)
..|..|+..+.+.. ...- .|++.|+.+| |......-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 46999999984221 1233 4999999999 33333334569877
No 106
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.27 E-value=3.7 Score=26.11 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=28.2
Q ss_pred CCCcccccccccccCCCCeEEe-C--CC-ChhhHhhHHHHHhc---CCCCCccccCcCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-S--CG-HLFHKVCLEKWLDY---LNVTCPLCRTPLI 147 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~w~~~---~~~~CP~Cr~~~~ 147 (158)
.+...| +|.... .++ .+.- . |. ..||..|+. +.. .+-.||.|+..-.
T Consensus 34 ~e~~yC-iC~~~~-~g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBC-CSC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCC-CCC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 344567 998864 232 2111 3 55 689999987 321 2346999976543
No 107
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.05 E-value=8.3 Score=25.13 Aligned_cols=47 Identities=28% Similarity=0.521 Sum_probs=27.6
Q ss_pred CCccccccccccc-----CCCCeEEe-CCCChhhHhhHHH------HHhcCCCCCcccc
Q 031525 97 AEHDCSVCLTEFE-----PQSDINNL-SCGHLFHKVCLEK------WLDYLNVTCPLCR 143 (158)
Q Consensus 97 ~~~~C~iCl~~~~-----~~~~~~~l-~C~H~fh~~Ci~~------w~~~~~~~CP~Cr 143 (158)
....|.+|+..-. .+++...- .|+..||..|+.. -.....-.||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3468999986521 11233333 5999999999952 2222334566664
No 108
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=61.34 E-value=5.3 Score=31.99 Aligned_cols=48 Identities=19% Similarity=0.467 Sum_probs=30.4
Q ss_pred cccccccccccCCCCeEEeCCCCh--hhHhhHHHHHh-cCCCCCccccCcCCC
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHL--FHKVCLEKWLD-YLNVTCPLCRTPLIP 148 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~--fh~~Ci~~w~~-~~~~~CP~Cr~~~~~ 148 (158)
..|++-...+. ..+|...|.|. |-..-+..... ...-.||+|.+.+..
T Consensus 250 L~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 58898877773 44556679998 54443333332 234469999887643
No 109
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=61.20 E-value=5 Score=24.73 Aligned_cols=53 Identities=28% Similarity=0.587 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHh-----cCCCCCccccCcCCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD-----YLNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~-----~~~~~CP~Cr~~~~~ 148 (158)
.+...|.+|...|..-.....- .||.+||..|...... .....|-.|-..+..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHH
Confidence 3446899999999533222333 5999999999654221 012247777555443
No 110
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=60.97 E-value=5.5 Score=31.75 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=30.8
Q ss_pred cccccccccccCCCCeEEeCCCCh--hhHhhHHHHHhc-CCCCCccccCcCCC
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHL--FHKVCLEKWLDY-LNVTCPLCRTPLIP 148 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~--fh~~Ci~~w~~~-~~~~CP~Cr~~~~~ 148 (158)
..|++-...+. ...|...|.|. |-..-+-..... ..-.||+|.+.+..
T Consensus 216 L~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 57888877773 34555679998 554444443331 33469999987754
No 111
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=59.99 E-value=20 Score=22.28 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=28.4
Q ss_pred CCCcccccccccccCCCCeEEeC--CCChhhHhhHHHHHhc
Q 031525 96 DAEHDCSVCLTEFEPQSDINNLS--CGHLFHKVCLEKWLDY 134 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~--C~H~fh~~Ci~~w~~~ 134 (158)
.....|.+|.+.+++. .-++.| =.|.||..|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 4457999999999544 344444 4699999999988874
No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=59.55 E-value=2.3 Score=30.69 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=29.6
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc---CCCCCccccCcC
Q 031525 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY---LNVTCPLCRTPL 146 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~~~ 146 (158)
++.|.+|... |+.+.--.|...||..|+.+=+.. ..-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4679999844 332222258999999999764431 122599997653
No 113
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=59.35 E-value=4.7 Score=24.29 Aligned_cols=46 Identities=22% Similarity=0.494 Sum_probs=27.7
Q ss_pred CCCcccccccccccCCCCeEEe-C--CC-ChhhHhhHHHHHhc---CCCCCccccCcC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-S--CG-HLFHKVCLEKWLDY---LNVTCPLCRTPL 146 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~w~~~---~~~~CP~Cr~~~ 146 (158)
.+...| +|.... .+ ..+.- . |. ..||..|+. +.. .+-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~-~g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCS-CS-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCC-CC-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 344567 898764 23 22222 3 65 699999987 332 233599997644
No 114
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=58.97 E-value=3.6 Score=26.66 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=11.1
Q ss_pred hhhHhhHHHHHhc
Q 031525 122 LFHKVCLEKWLDY 134 (158)
Q Consensus 122 ~fh~~Ci~~w~~~ 134 (158)
.||+.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4899999999963
No 115
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=58.46 E-value=3.8 Score=26.54 Aligned_cols=12 Identities=50% Similarity=1.002 Sum_probs=10.7
Q ss_pred hhhHhhHHHHHh
Q 031525 122 LFHKVCLEKWLD 133 (158)
Q Consensus 122 ~fh~~Ci~~w~~ 133 (158)
.||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 489999999996
No 116
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=58.14 E-value=7.3 Score=24.08 Aligned_cols=35 Identities=17% Similarity=0.427 Sum_probs=24.4
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHH
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEK 130 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~ 130 (158)
.+...|.+|...|..-.....- .||++||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3446899999999533223333 5999999999544
No 117
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=55.88 E-value=7.2 Score=23.40 Aligned_cols=31 Identities=23% Similarity=0.533 Sum_probs=21.9
Q ss_pred cccccccccccCCCCeEEe-CCCChhhHhhHH
Q 031525 99 HDCSVCLTEFEPQSDINNL-SCGHLFHKVCLE 129 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~ 129 (158)
..|.+|...|..-.....- .||.+|+..|-.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 5899999999532222333 599999999953
No 118
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=55.67 E-value=18 Score=18.31 Aligned_cols=23 Identities=9% Similarity=0.317 Sum_probs=13.1
Q ss_pred CCCCCCCCCCcchHHHHHHHHHH
Q 031525 1 MGLASMPSASEGMLCLILMNTAM 23 (158)
Q Consensus 1 m~~s~~~~~~~~~~~~~l~~~~~ 23 (158)
.||+++|..-..++.+++...+.
T Consensus 1 ~~iPccp~~lKrLlivVvVvVlv 23 (35)
T 1spf_A 1 LRIPCCPVNLKRLLVVVVVVVLV 23 (35)
T ss_dssp CCCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCccccchheEEEEEeeehhh
Confidence 47888886645555444444433
No 119
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=54.05 E-value=7.1 Score=26.14 Aligned_cols=32 Identities=22% Similarity=0.582 Sum_probs=22.8
Q ss_pred CcccccccccccCCCCeEEe-CCCChhhHhhHH
Q 031525 98 EHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLE 129 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~ 129 (158)
...|.+|...|..-.....- .||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 35899999999533222333 599999999954
No 120
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=53.86 E-value=7.6 Score=24.39 Aligned_cols=33 Identities=24% Similarity=0.654 Sum_probs=23.3
Q ss_pred CcccccccccccCCCCeEEe-CCCChhhHhhHHH
Q 031525 98 EHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEK 130 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~ 130 (158)
...|.+|...|..-.....- .||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 35899999999533222333 5999999999654
No 121
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.56 E-value=5.3 Score=25.04 Aligned_cols=50 Identities=20% Similarity=0.461 Sum_probs=31.5
Q ss_pred CCcccccccccccCC-CCeEEe-CCCChhhHhhHHHHHh-------cCCCCCccccCcC
Q 031525 97 AEHDCSVCLTEFEPQ-SDINNL-SCGHLFHKVCLEKWLD-------YLNVTCPLCRTPL 146 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~-~~~~~l-~C~H~fh~~Ci~~w~~-------~~~~~CP~Cr~~~ 146 (158)
.+..|.||...-... ..+..- .|...||..|+..=+. ...=.|+.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 346899999763221 223333 5999999999876432 1123599996544
No 122
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=52.78 E-value=11 Score=25.53 Aligned_cols=47 Identities=19% Similarity=0.439 Sum_probs=30.6
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHH-----Hhc-----CCCCCccccCc
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKW-----LDY-----LNVTCPLCRTP 145 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w-----~~~-----~~~~CP~Cr~~ 145 (158)
...++.|.+|-+.- ++.-- .|-..||..|+.+- +.. ..=.|+.|+..
T Consensus 54 Dg~~~~C~vC~dGG----~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG----NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCS----EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCC----eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 45567899998542 23222 59999999999974 211 12359999643
No 123
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.58 E-value=6.6 Score=28.73 Aligned_cols=32 Identities=25% Similarity=0.593 Sum_probs=23.2
Q ss_pred CcccccccccccCCCCeEEe-CCCChhhHhhHH
Q 031525 98 EHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLE 129 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~ 129 (158)
+..|.+|...|.--.....- .||+.||..|-.
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 47999999999533233344 599999999954
No 124
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=51.48 E-value=25 Score=18.40 Aligned_cols=27 Identities=11% Similarity=0.345 Sum_probs=16.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHH
Q 031525 6 MPSASEGMLCLILMNTAMSISIVKGIF 32 (158)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~~i~~~~~i~ 32 (158)
.+..+.+.++-+++..+..++++..+.
T Consensus 5 ~~~ls~GaIAGiVvG~v~gv~li~~l~ 31 (38)
T 2k1k_A 5 SRGLTGGEIVAVIFGLLLGAALLLGIL 31 (38)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceeeeehHHHHHHHHHHHHH
Confidence 344556777777777766555554443
No 125
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=51.07 E-value=5.3 Score=26.22 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=21.0
Q ss_pred ccccccccccc----CC--CCeEEe-CCCChhhHhhHHHH
Q 031525 99 HDCSVCLTEFE----PQ--SDINNL-SCGHLFHKVCLEKW 131 (158)
Q Consensus 99 ~~C~iCl~~~~----~~--~~~~~l-~C~H~fh~~Ci~~w 131 (158)
..|.+|+..-. .| +....- .|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46888886531 11 222222 59999999998653
No 126
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.62 E-value=10 Score=23.40 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=23.2
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHH
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLE 129 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~ 129 (158)
.+...|.+|...|..-.....- .||.+||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3446899999999432222233 599999999954
No 127
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=49.58 E-value=11 Score=23.53 Aligned_cols=52 Identities=25% Similarity=0.408 Sum_probs=30.8
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHh------cCCCCCccccCcCC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD------YLNVTCPLCRTPLI 147 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~------~~~~~CP~Cr~~~~ 147 (158)
.+...|.+|...|..-.....- .||.+||..|...... .....|-.|-..+.
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 3445899999999533222233 5999999999643211 01234777755443
No 128
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=48.33 E-value=3.7 Score=30.62 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=24.9
Q ss_pred cccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcC----CCCCccccC
Q 031525 99 HDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYL----NVTCPLCRT 144 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~----~~~CP~Cr~ 144 (158)
..|.+|...- ++.....- .|...||..|+++=+... .=.||.|+.
T Consensus 175 c~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3577887642 12233333 599999999998544321 124999964
No 129
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.17 E-value=24 Score=21.48 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=24.6
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
....|..|-+.+.. . .+..-+..||..| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~--~~~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-A--VVKARDKYRHPEC---------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-C--CEESSSCEECTTT---------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-c--EEEECCceECccC---------CEecCCCCCCCC
Confidence 34578888887752 2 2233567777666 457777666643
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.95 E-value=8.4 Score=28.40 Aligned_cols=33 Identities=24% Similarity=0.664 Sum_probs=23.5
Q ss_pred CcccccccccccCCCCeEEe-CCCChhhHhhHHH
Q 031525 98 EHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEK 130 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~ 130 (158)
+..|..|...|.--.....- .||++||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 46999999999533223333 5999999999653
No 131
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.33 E-value=2.7 Score=25.86 Aligned_cols=45 Identities=31% Similarity=0.569 Sum_probs=27.6
Q ss_pred cccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcC----CCCCccccC
Q 031525 99 HDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYL----NVTCPLCRT 144 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~----~~~CP~Cr~ 144 (158)
..|.+|...-. +.....- .|...||..|+++=+... .=.||.|+.
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 37788886532 2333333 599999999998533321 224888854
No 132
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=45.61 E-value=6.9 Score=23.16 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=24.8
Q ss_pred cccccccccccCCCCeEEeCCCChhhH-hhHHHHHhcCCCCCccccCcC
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHK-VCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~-~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
..|..|...+..+. ....=+..+|. .|..+-+ ...|--|...+
T Consensus 28 F~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~ 71 (76)
T 1iml_A 28 LKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAMF---GPKGFGRGGAE 71 (76)
T ss_dssp CBCTTTCCBCCTTT--EEEETTEEEETTTHHHHHS---SCCCSSCCCSS
T ss_pred CCccccCccCCCCc--eECcCCeEeeCHHHHHHHh---CccCCCcCCce
Confidence 57788887775432 22334566676 4765532 45677775443
No 133
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=45.60 E-value=15 Score=23.89 Aligned_cols=47 Identities=21% Similarity=0.435 Sum_probs=28.9
Q ss_pred CCCCcccccccccccCCCCeEEe---CCCChhhHhhHHHHHhcC---CCCCccccCcCC
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL---SCGHLFHKVCLEKWLDYL---NVTCPLCRTPLI 147 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l---~C~H~fh~~Ci~~w~~~~---~~~CP~Cr~~~~ 147 (158)
...++.|.+|.+. .....- .|...||..|+. +... .-.||-|+..+.
T Consensus 12 ~~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 4566789999832 233333 388999999997 4321 123787754443
No 134
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.02 E-value=14 Score=21.68 Aligned_cols=40 Identities=28% Similarity=0.647 Sum_probs=25.7
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
...|..|-+.+..++.+. .-+..||..| ..|..|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C---------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC---------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT---------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC---------CCCCCCCCccCC
Confidence 357888888876554332 3466777665 457777776653
No 135
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=44.73 E-value=11 Score=25.51 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=23.5
Q ss_pred CCCCccccccccccc-CCCCeEEe-CCCChhhHhhHH
Q 031525 95 EDAEHDCSVCLTEFE-PQSDINNL-SCGHLFHKVCLE 129 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~-~~~~~~~l-~C~H~fh~~Ci~ 129 (158)
..++..|.+|...|. .+..-+.- .|.|.+|..|-.
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred cCCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 356689999999993 22222333 588888888843
No 136
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=44.49 E-value=10 Score=26.46 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=22.3
Q ss_pred CCcccccccccccCCC--CeEEeCCCChhhHhhH
Q 031525 97 AEHDCSVCLTEFEPQS--DINNLSCGHLFHKVCL 128 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~--~~~~l~C~H~fh~~Ci 128 (158)
++..|.+|...|.--. ...-..|+|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 5689999999873222 2222359999999885
No 137
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=44.21 E-value=2.4 Score=23.79 Aligned_cols=41 Identities=20% Similarity=0.448 Sum_probs=24.6
Q ss_pred cccccccCCCCeEEe-CCCChhhHhhHHHHHh--cCCCCCccccC
Q 031525 103 VCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD--YLNVTCPLCRT 144 (158)
Q Consensus 103 iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~--~~~~~CP~Cr~ 144 (158)
+|..... +...+.- .|...||..|+.---. ..+..||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5666543 3233333 4999999999853221 13456999875
No 138
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.60 E-value=22 Score=21.63 Aligned_cols=39 Identities=15% Similarity=0.386 Sum_probs=23.8
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
....|..|-+.+. ++ .+..-+..||..| ..|-.|+..|.
T Consensus 24 ~~~~C~~C~~~I~-~~--~v~a~~~~~H~~C---------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GP--FLVALGKSWHPEE---------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SC--EEEETTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCccCCCEec-ce--EEEECCccccccC---------CccCCCCCCCC
Confidence 3457888888773 22 2234566777665 45777766664
No 139
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=42.64 E-value=8.8 Score=22.51 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=31.0
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc---CCCCCccccCc
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY---LNVTCPLCRTP 145 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~~ 145 (158)
...+..|.||... + ....- .|...||..|+.+-+.. ..-.||.|...
T Consensus 5 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 3566799999864 2 33333 59999999999854332 12249999653
No 140
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.64 E-value=15 Score=22.11 Aligned_cols=40 Identities=20% Similarity=0.509 Sum_probs=26.0
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
....|..|-+.+.+++.+.. -+..||..| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc---------CCcCcCCCCcC
Confidence 34688889888765554443 356677665 45777777664
No 141
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=42.42 E-value=3.4 Score=23.94 Aligned_cols=44 Identities=23% Similarity=0.534 Sum_probs=25.8
Q ss_pred CCCcccccccccccCCCCeEEe-C--CC-ChhhHhhHHHHHhc---CCCCCccccC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-S--CG-HLFHKVCLEKWLDY---LNVTCPLCRT 144 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~w~~~---~~~~CP~Cr~ 144 (158)
.+...| +|.... .| ..+.- . |. ..||..|+. +.. .+-.||.|++
T Consensus 7 ~e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 344566 898764 23 22222 4 65 699999987 332 1335998864
No 142
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=41.10 E-value=11 Score=25.22 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=28.1
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRT 144 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~ 144 (158)
.....|..|...|..-.....- .||.+||..|-..... ....|-.|-.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHH
Confidence 3446899999999422222233 5999999999655443 2455766643
No 143
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=40.99 E-value=15 Score=21.92 Aligned_cols=33 Identities=18% Similarity=0.517 Sum_probs=25.6
Q ss_pred CCCCcccccccccccCCCCeEEeCC-CChhhHhhHHHH
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNLSC-GHLFHKVCLEKW 131 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C-~H~fh~~Ci~~w 131 (158)
.++..-|.||.+.- .++-+.| +-.||..|+.+-
T Consensus 5 ~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 45557899999773 5777788 789999998774
No 144
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.87 E-value=4.2 Score=23.57 Aligned_cols=44 Identities=23% Similarity=0.536 Sum_probs=25.3
Q ss_pred CCCcccccccccccCCCCeEEe-C--CC-ChhhHhhHHHHHhc---CCCCCccccC
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-S--CG-HLFHKVCLEKWLDY---LNVTCPLCRT 144 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~w~~~---~~~~CP~Cr~ 144 (158)
.+...| +|.... .| ..+.- . |. ..||..|+. +.. .+-.||.|+.
T Consensus 8 ~e~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 344566 898764 22 22222 3 55 689999987 332 2235998854
No 145
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.79 E-value=29 Score=20.77 Aligned_cols=41 Identities=29% Similarity=0.699 Sum_probs=25.3
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
....|..|-+.+..++.+. .-+..||..| ..|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C---------F~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC---------FRCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT---------CBCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc---------CEEcCCCCCcCC
Confidence 4468999998875444433 3466778776 345566555543
No 146
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=37.23 E-value=8 Score=19.00 Aligned_cols=12 Identities=25% Similarity=0.720 Sum_probs=7.8
Q ss_pred CCCCccccCcCC
Q 031525 136 NVTCPLCRTPLI 147 (158)
Q Consensus 136 ~~~CP~Cr~~~~ 147 (158)
+..||+|+...+
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 456888876543
No 147
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=35.08 E-value=11 Score=19.43 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=5.8
Q ss_pred CCCccccCcC
Q 031525 137 VTCPLCRTPL 146 (158)
Q Consensus 137 ~~CP~Cr~~~ 146 (158)
..||+|.+.+
T Consensus 6 FiCP~C~~~l 15 (34)
T 3mjh_B 6 FICPQCMKSL 15 (34)
T ss_dssp EECTTTCCEE
T ss_pred cCCcHHHHHc
Confidence 4566665544
No 148
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.72 E-value=40 Score=19.33 Aligned_cols=40 Identities=18% Similarity=0.442 Sum_probs=23.6
Q ss_pred CcccccccccccC--CCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 98 EHDCSVCLTEFEP--QSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 98 ~~~C~iCl~~~~~--~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
...|..|-+.+.. ++.. +..-+..||..| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDC---------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTT---------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCccc---------CEeccCCCcCC
Confidence 3578888887753 1122 223566777666 45677766654
No 149
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.72 E-value=45 Score=19.02 Aligned_cols=39 Identities=31% Similarity=0.602 Sum_probs=21.5
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
..|..|-+.+..++. .+..-+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHC---------FLCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTT---------CBCTTTCCBTT
T ss_pred CCCccCCCccccCcc-EEEECccccCccc---------CeECCCCCcCC
Confidence 467777777643222 2223456667655 34666666554
No 150
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=33.97 E-value=9.9 Score=18.76 Aligned_cols=27 Identities=22% Similarity=0.589 Sum_probs=16.4
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhh
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVC 127 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~C 127 (158)
..|+.|....-..+.+ ..-+..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~--~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKV--NCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCC--CSSSSCCCGGG
T ss_pred CcCCccCCEEecceeE--EECCeEecccC
Confidence 4688887776433222 23567788777
No 151
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.92 E-value=8.6 Score=30.69 Aligned_cols=49 Identities=18% Similarity=0.397 Sum_probs=0.0
Q ss_pred CcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc------CCCCCccccCcC
Q 031525 98 EHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY------LNVTCPLCRTPL 146 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~------~~~~CP~Cr~~~ 146 (158)
...|..|...|..-...... .||++||..|-.....- ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 46899999998422112222 59999999998665421 123476664433
No 152
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.56 E-value=36 Score=20.06 Aligned_cols=40 Identities=23% Similarity=0.504 Sum_probs=24.4
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
..|..|-+.+..++.. +..-+..||..| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C---------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDC---------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTT---------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceE-EEECcccccccc---------CchhhCCCccCC
Confidence 5788888887544332 233466777665 456677666643
No 153
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=33.50 E-value=4.5 Score=24.23 Aligned_cols=44 Identities=27% Similarity=0.558 Sum_probs=25.3
Q ss_pred ccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcC----CCCCccccC
Q 031525 100 DCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYL----NVTCPLCRT 144 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~----~~~CP~Cr~ 144 (158)
.|.+|...- ++.....- .|...||..|+++=+... .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 445666432 12233322 499999999998544321 224888864
No 154
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=33.45 E-value=28 Score=24.36 Aligned_cols=35 Identities=14% Similarity=0.469 Sum_probs=25.7
Q ss_pred CCCCcccccccccccCCCCeEEe---CCCChhhHhhHHHHHh
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL---SCGHLFHKVCLEKWLD 133 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l---~C~H~fh~~Ci~~w~~ 133 (158)
.+.+..|.+|-+. ..+..- .|...||..||+..+-
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 4556789999853 344433 4999999999998874
No 155
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.87 E-value=49 Score=18.77 Aligned_cols=37 Identities=24% Similarity=0.554 Sum_probs=19.9
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
..|..|-+.+.. + .+..-+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~~~~~H~~C---------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-G--GVTYREQPWHKEC---------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-S--EEESSSSEEETTT---------SBCSSSCCBCT
T ss_pred CCCcccCCeecc-c--eEEECccccCCCC---------CccCCCCCcCC
Confidence 467777766642 1 1233456666555 34666666553
No 156
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.85 E-value=26 Score=20.73 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=22.3
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031525 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
...|..|-+.+.. + .+..-+..||..| ..|-.|+..|
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~C---------F~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPEC---------YVCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTT---------TSCSSSCCCH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCc---------CeeCCCCCCC
Confidence 4578888887752 2 2333567777666 3466665554
No 157
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.85 E-value=8 Score=24.42 Aligned_cols=49 Identities=24% Similarity=0.338 Sum_probs=30.5
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc---CCCCCccccCc
Q 031525 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY---LNVTCPLCRTP 145 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~---~~~~CP~Cr~~ 145 (158)
.++..|.||...-.. +....- .|...||..|+.+=+.. ..=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345689999876421 223333 59999999998753321 12249999653
No 158
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=32.36 E-value=3.3 Score=25.49 Aligned_cols=27 Identities=37% Similarity=0.824 Sum_probs=18.4
Q ss_pred CCCChhhHhhHHHHHhcC---C-CCCccccC
Q 031525 118 SCGHLFHKVCLEKWLDYL---N-VTCPLCRT 144 (158)
Q Consensus 118 ~C~H~fh~~Ci~~w~~~~---~-~~CP~Cr~ 144 (158)
.|...||..|+.+-+... . =.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 599999999998654321 1 35888865
No 159
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.66 E-value=29 Score=19.83 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=18.9
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
..|..|-+.+. ++.+ ..-+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~-~~~~--~a~~~~~H~~C---------F~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFII-GRVI--KAMNNSWHPEC---------FRCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCC-SCCE--EETTEEECTTT---------SBCSSSCCBCS
T ss_pred CcCccCCCEec-ceEE--EECcccccccC---------CEeCCCCCcCC
Confidence 46777776664 2222 22345566554 34556655554
No 160
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.60 E-value=41 Score=19.60 Aligned_cols=40 Identities=18% Similarity=0.412 Sum_probs=22.3
Q ss_pred cccccccccccC-CCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 99 HDCSVCLTEFEP-QSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 99 ~~C~iCl~~~~~-~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
..|+.|-+.+.. ++...+..-+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC---------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG---------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc---------CChhhCCCcCC
Confidence 478888887753 11122333566777766 34566655553
No 161
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=30.45 E-value=18 Score=23.55 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=18.3
Q ss_pred CCCChhhHhhHH------HHHhc----CCCCCccccCcC
Q 031525 118 SCGHLFHKVCLE------KWLDY----LNVTCPLCRTPL 146 (158)
Q Consensus 118 ~C~H~fh~~Ci~------~w~~~----~~~~CP~Cr~~~ 146 (158)
.|++.||..|+. +-+.+ ....||.|...-
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 388999999951 22221 236799996543
No 162
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.44 E-value=46 Score=19.68 Aligned_cols=39 Identities=15% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
....|..|-+.+. ++.+ ..-+..||..| .+|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--IFKNDPYHPDH---------FNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--CCSSSCCCTTT---------SBCSSSCCBCC
T ss_pred CCCCCccCCCEec-ceEE--EECcceeCCCC---------CEeCCCCCccC
Confidence 3457888887775 2222 23455666555 45666766654
No 163
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.95 E-value=48 Score=19.18 Aligned_cols=41 Identities=32% Similarity=0.686 Sum_probs=24.0
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
....|..|-+.+..++... ..-+..||..| ..|-.|+..+.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~ 50 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQC---------FVCAQCFQQFP 50 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCE-EETTEEECTTT---------CCCTTTCCCCG
T ss_pred CCCCchhcCCccCCCceEE-EeCccEecccc---------CeECCCCCCCC
Confidence 4468888888875433332 12355667655 44666666654
No 164
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=29.33 E-value=66 Score=16.75 Aligned_cols=27 Identities=11% Similarity=-0.010 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031525 17 ILMNTAMSISIVKGIFRSILKVVGFQL 43 (158)
Q Consensus 17 ~l~~~~~~i~~~~~i~~~~~~~~~~~~ 43 (158)
-++.++..+|+...++.++..++....
T Consensus 6 qL~~lan~lG~~~~~LIVlYH~v~~n~ 32 (37)
T 2lat_A 6 QLAIFANMLGVSLFLLVVLYHYVAVNN 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 456677778877777778888776654
No 165
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.01 E-value=16 Score=21.06 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=8.0
Q ss_pred CCCCccccCcCCC
Q 031525 136 NVTCPLCRTPLIP 148 (158)
Q Consensus 136 ~~~CP~Cr~~~~~ 148 (158)
...||.|+..|-.
T Consensus 6 ~k~CP~C~~~Iek 18 (60)
T 1wd2_A 6 TKECPKCHVTIEK 18 (60)
T ss_dssp CCCCTTTCCCCSS
T ss_pred ceECcCCCCeeEe
Confidence 4557777666544
No 166
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=28.24 E-value=34 Score=27.46 Aligned_cols=34 Identities=15% Similarity=0.434 Sum_probs=24.6
Q ss_pred CCCCcccccccccccCCCCeEEe---CCCChhhHhhHHHHH
Q 031525 95 EDAEHDCSVCLTEFEPQSDINNL---SCGHLFHKVCLEKWL 132 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l---~C~H~fh~~Ci~~w~ 132 (158)
...+..|.+|-+.- ++..- .|...||..||++.+
T Consensus 90 DG~~~yCr~C~~Gg----~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 90 DGYQSYCSICCSGE----TLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSSBCSCTTTCCCS----SCEECCSTTCCCEECHHHHHHHT
T ss_pred CCCcccceEcCCCC----eEEEeCCCCCCcchHHHHHHHhc
Confidence 34557888888542 33333 599999999999987
No 167
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.00 E-value=56 Score=18.28 Aligned_cols=37 Identities=22% Similarity=0.509 Sum_probs=23.5
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
..|+.|-+.+. ++ .+..-+..||..| ..|-.|+..+.
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~C---------F~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEH---------FVCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTT---------CBCTTTCCBCS
T ss_pred CCCcccCCEec-ce--EEEECccccccCc---------CEECCCCCCCC
Confidence 57888888775 22 2334566777665 45777777664
No 168
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=27.82 E-value=49 Score=19.62 Aligned_cols=46 Identities=22% Similarity=0.478 Sum_probs=28.8
Q ss_pred cccccccccccCCCCeEEe-CCCChhhHhhHHHHHh----cCCCCCccccCc
Q 031525 99 HDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD----YLNVTCPLCRTP 145 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~----~~~~~CP~Cr~~ 145 (158)
..| ||...+..+...+.- .|.-.||..|+.---. .....||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344 888776433334443 4999999999853211 124569999764
No 169
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.78 E-value=43 Score=19.10 Aligned_cols=39 Identities=23% Similarity=0.576 Sum_probs=19.8
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
..|..|-+.+..++.. +..-+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETC---------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTT---------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceE-EEECcCeecccC---------CcccccCCccC
Confidence 4677777766433222 222345566554 34556655553
No 170
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=25.79 E-value=13 Score=30.44 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=29.4
Q ss_pred ccccccccccCCCCeEEe-CCCChhhHhhHHHHHh----cCCCCCccccCcC
Q 031525 100 DCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD----YLNVTCPLCRTPL 146 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~----~~~~~CP~Cr~~~ 146 (158)
...+|......+...+.. .|...||..|+.---. ..+..||.|+...
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 344888776433444444 4999999999842111 1245799997643
No 171
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.90 E-value=60 Score=19.63 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=5.4
Q ss_pred ccccccccccc
Q 031525 99 HDCSVCLTEFE 109 (158)
Q Consensus 99 ~~C~iCl~~~~ 109 (158)
..|..|-+.+.
T Consensus 16 ~~C~~C~~~I~ 26 (91)
T 2d8y_A 16 ETCVECQKTVY 26 (91)
T ss_dssp CBCTTTCCBCC
T ss_pred CcCccCCCccC
Confidence 34555555543
No 172
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=24.84 E-value=21 Score=21.23 Aligned_cols=27 Identities=22% Similarity=0.620 Sum_probs=14.3
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhh
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVC 127 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~C 127 (158)
..|..|-+.+.+++.+ ..-+..||..|
T Consensus 8 ~~C~~C~~~I~~~~~~--~a~~~~~H~~C 34 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEV--QCDGRSFHRCC 34 (81)
T ss_dssp CBCSSSCCBCSSTTEE--EETTEEEESSS
T ss_pred CcCcCcCccccCceeE--EeCCccccccc
Confidence 4677777766444422 22445566544
No 173
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.41 E-value=22 Score=22.86 Aligned_cols=39 Identities=28% Similarity=0.669 Sum_probs=21.8
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
..||.|..+++-. =++.+|..|-... . ....||-|.+++
T Consensus 33 ~~CP~Cq~eL~~~-------g~~~hC~~C~~~f-~-~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQD-------NGHARCRSCGEFI-E-MKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEE-------TTEEEETTTCCEE-E-EEEECTTTCSBC
T ss_pred ccCccCCCcceec-------CCEEECccccchh-h-ccccCcchhhHH
Confidence 6899999877311 1222344552221 1 245689888776
No 174
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=23.34 E-value=48 Score=18.70 Aligned_cols=42 Identities=31% Similarity=0.666 Sum_probs=26.4
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
....|..|-..+..++.+. ..-+..||..| ..|-.|...+..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~-~~~~~~~H~~C---------F~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQC---------FVCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEE-EETTEEEETTT---------SSCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEE-EeCcCeeCcCC---------CcccCCCCCCCC
Confidence 3468999998875444332 23456678766 357777776643
No 175
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.25 E-value=37 Score=22.01 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=19.3
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD 133 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~ 133 (158)
..|..|...+..++. ....=+..+|..|..+.+.
T Consensus 37 F~C~~C~~~L~~g~~-f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 37 FKCAACQKHFSVGDR-YLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp CBCTTTCCBCCTTCE-EEECSSSEEEGGGHHHHHH
T ss_pred CccccCCCCCCCCCc-EEeeCCEEEcHHHhHHHhc
Confidence 466677666643332 2233456677777766653
No 176
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.21 E-value=58 Score=21.06 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=11.3
Q ss_pred CChhhHhhHHHHHhcCCCCCccccCcC
Q 031525 120 GHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 120 ~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
+..+|..|..+-+. .+..|..|...|
T Consensus 51 g~~yC~~~y~~~~~-~~~~C~~C~~~I 76 (131)
T 2xjy_A 51 GRKLCRRDYLRLFG-QDGLCASCDKRI 76 (131)
T ss_dssp TEEECHHHHHHHHC-CCEECTTTCCEE
T ss_pred CEEeecCchhhhCC-CccChhhcCCcc
Confidence 34445555444332 112455555544
No 177
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.74 E-value=57 Score=21.02 Aligned_cols=49 Identities=8% Similarity=0.020 Sum_probs=31.2
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
..|..|...+.+........=+..+|..|..+-+. .+..|-.|...|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC-CCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC-CCCccccCCCCcCc
Confidence 47788877774211122334566788888887664 33479999888764
No 178
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=22.26 E-value=13 Score=24.30 Aligned_cols=23 Identities=26% Similarity=0.902 Sum_probs=14.1
Q ss_pred CCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031525 118 SCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 118 ~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
.||+.|. ++ + .....||.|+..-
T Consensus 72 ~CG~~F~----~~-~-~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK----AE-I-NIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC----CC-S-SCCSSCSSSCCCC
T ss_pred hCcCeec----cc-C-CCCCCCcCCCCCc
Confidence 5888871 11 1 1356799998753
No 179
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=22.21 E-value=83 Score=18.28 Aligned_cols=37 Identities=22% Similarity=0.485 Sum_probs=29.0
Q ss_pred CCcccccccccccCCCCeEEeC-CCChhhHh-hHHHHHh
Q 031525 97 AEHDCSVCLTEFEPQSDINNLS-CGHLFHKV-CLEKWLD 133 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~-Ci~~w~~ 133 (158)
-...|.-|-.++..|.....-. ..|.||.. ||...-+
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs~ 57 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSS 57 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHCC
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHcccCC
Confidence 3569999999998888777765 88888865 8887543
No 180
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.98 E-value=49 Score=18.72 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=6.1
Q ss_pred ccccccccccc
Q 031525 99 HDCSVCLTEFE 109 (158)
Q Consensus 99 ~~C~iCl~~~~ 109 (158)
..|..|-+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (69)
T 2cur_A 6 SGCVKCNKAIT 16 (69)
T ss_dssp CCCSSSCCCCC
T ss_pred CCCcccCCEeC
Confidence 35666665553
No 181
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.79 E-value=5.3 Score=24.53 Aligned_cols=14 Identities=36% Similarity=0.961 Sum_probs=12.2
Q ss_pred CCCChhhHhhHHHH
Q 031525 118 SCGHLFHKVCLEKW 131 (158)
Q Consensus 118 ~C~H~fh~~Ci~~w 131 (158)
.|++.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 48999999998876
No 182
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.77 E-value=44 Score=19.67 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=16.0
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhh
Q 031525 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVC 127 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~C 127 (158)
..|+.|.+... ++.+ ..-+..||..|
T Consensus 16 ~~C~~C~~~I~-~~~v--~a~~~~wH~~C 41 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVV--SALGKTYHPDC 41 (81)
T ss_dssp CBCTTTCCBCC-SCCE--EETTEEECTTT
T ss_pred CcCccccCEec-cceE--EECCceeCccC
Confidence 47888888875 3222 23456677665
No 183
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.68 E-value=47 Score=19.27 Aligned_cols=10 Identities=20% Similarity=0.601 Sum_probs=5.6
Q ss_pred cccccccccc
Q 031525 99 HDCSVCLTEF 108 (158)
Q Consensus 99 ~~C~iCl~~~ 108 (158)
..|+-|-..+
T Consensus 6 ~~C~~C~~~I 15 (73)
T 1wig_A 6 SGCDSCEKYI 15 (73)
T ss_dssp CSCSSSCCCC
T ss_pred CCcccCCCEe
Confidence 3566666555
No 184
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=21.64 E-value=57 Score=26.91 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=29.8
Q ss_pred CcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc----CCCCCccccCc
Q 031525 98 EHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY----LNVTCPLCRTP 145 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~----~~~~CP~Cr~~ 145 (158)
...| +|......+...+.. .|...||..|+.---.. ....||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3455 898876434444444 49999999998432111 23569999754
Done!