BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031527
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RH0|A Chain A, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
pdb|2RH0|B Chain B, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
pdb|2RH0|C Chain C, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
pdb|2RH0|D Chain D, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
Length = 157
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 8 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
E+R + G +W QTL+E+ I + +PP ++ C +QS+H+ L + G L
Sbjct: 3 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKG 61
Query: 68 ELTCPVKTDSSFWTLEDDV---MHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
+L D WTLED + +T TKRD W S + + DP+V DQ Q++L L
Sbjct: 62 KLFDSTIADEGTWTLEDRKXVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQXQRKLTL 121
Query: 125 QRFQEENPGFDFSQAQFTGS 144
+RFQ+ENPGFDFS A+ +G+
Sbjct: 122 ERFQKENPGFDFSGAEISGN 141
>pdb|1WFI|A Chain A, Nuclear Move Domain Of Nuclear Distribution Gene C Homolog
Length = 131
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 21 FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
+ W QTL E+++ + + + K IQ +H+ +G+KG PP ++ EL VK + S
Sbjct: 10 YRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEES 69
Query: 79 FWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
W +ED V+ + L K +K + W + +++ + E +L
Sbjct: 70 SWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKL 114
>pdb|2CR0|A Chain A, Solution Structure Of Nuclear Move Domain Of Nuclear
Distribution Gene C
Length = 121
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 14 LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + + + K IQ +H+ +G+KG PP ++ EL
Sbjct: 11 LGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGEL 70
Query: 70 TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTW 100
VK + S W +ED V+ + L K +K + W
Sbjct: 71 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWW 102
>pdb|3QOR|A Chain A, Crystal Structure Of Human Nuclear Migration Protein Nudc
pdb|3QOR|B Chain B, Crystal Structure Of Human Nuclear Migration Protein Nudc
pdb|3QOR|D Chain D, Crystal Structure Of Human Nuclear Migration Protein Nudc
pdb|3QOR|E Chain E, Crystal Structure Of Human Nuclear Migration Protein Nudc
Length = 121
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 14 LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + N + K IQ +H+ +G+KG P ++ EL
Sbjct: 10 LGNGADLPNYRWTQTLSELDLAVPFXVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGEL 69
Query: 70 TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWA 101
VK + S W + D V+ + L K +K + W+
Sbjct: 70 YNEVKVEESSWLIADGAVVTVHLEKINKMEWWS 102
>pdb|3QOR|C Chain C, Crystal Structure Of Human Nuclear Migration Protein Nudc
Length = 121
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 14 LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + N + K IQ +H+ +G+KG P ++ EL
Sbjct: 10 LGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGEL 69
Query: 70 TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWA 101
VK + S W + D V+ + L K +K + W+
Sbjct: 70 YNEVKVEESSWLIADGAVVTVHLEKINKMEWWS 102
>pdb|2O30|A Chain A, Nuclear Movement Protein From E. Cuniculi Gb-M1
pdb|2O30|B Chain B, Nuclear Movement Protein From E. Cuniculi Gb-M1
Length = 131
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
+ WDQ L+EINI + + S + K I + +G ++ EL V S +W
Sbjct: 7 YTWDQELNEINIQFPVTGDADSSAIKIRXVGKKICVKNQG-EIVIDGELLHEVDVSSLWW 65
Query: 81 TLEDDVMHITLTKRDKGQTWASPIMGQGQLD 111
+ DV+ + +TK+ + + W S ++G +D
Sbjct: 66 VINGDVVDVNVTKK-RNEWWDSLLVGSESVD 95
>pdb|1WGV|A Chain A, Solution Structure Of The Cs Domain Of Human Kiaa1068
Protein
Length = 124
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 21 FEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGI---KGNPPYLNHELTCPVKTD 76
+ W Q ++ + + +P +V KQ + S I + + G + +LT + T+
Sbjct: 22 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 81
Query: 77 SSFWTLE-DDVMHITLTKRDKGQTWASPIM 105
SS W+LE + + L+K G+ W + I+
Sbjct: 82 SSLWSLEPGKCVLVNLSKV--GEYWWNAIL 109
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 31.2 bits (69), Expect = 0.24, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 29 EINIYINLPPNVHSKQFYCKIQSKHIE-LGIKGNPPYLNHELTCPVKTDS-SFWTLEDDV 86
E+ YI+ HS+ F ++ +H LG+ + P + S S W +DD+
Sbjct: 382 ELVDYIDATAASHSRAFVVEVMGRHCGWLGLMSGIATGADYIFIPERPPSESNW--KDDL 439
Query: 87 MHITLTKRDKGQTWASPIMGQG----QLDPYVTDQEQKRLMLQ 125
+ L R+KG+ + I+ +G QL+P +T +E K ++++
Sbjct: 440 KKVCLRHREKGRRKTTVIVAEGAIDDQLNP-ITSEEVKDVLVE 481
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 29.3 bits (64), Expect = 0.97, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F GSC + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGG 52
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 29.3 bits (64), Expect = 0.97, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F GSC + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGG 52
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 29.3 bits (64), Expect = 0.97, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F GSC + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGG 52
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 29.3 bits (64), Expect = 0.97, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F GSC + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGG 52
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 29.3 bits (64), Expect = 0.97, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F GSC + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGG 52
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 29.3 bits (64), Expect = 0.97, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F GSC + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGG 52
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
++ RF + NP + + A F G+C + R + GG
Sbjct: 19 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 28.1 bits (61), Expect = 2.4, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 126 RFQEENPGFDFSQAQFTGSCPDPRTFMGG 154
RF + NP + + A F G+C + R + GG
Sbjct: 24 RFSDGNPANNPTGAAFDGTCTNLRLYCGG 52
>pdb|3O5C|A Chain A, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|B Chain B, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|C Chain C, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|D Chain D, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
Length = 320
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 62 PPYLNHELTCPVKTDSSFWTLEDDV 86
P N ELT P D S WTLE+ V
Sbjct: 239 PTLRNIELTYPYFHDGSVWTLEEAV 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,448,841
Number of Sequences: 62578
Number of extensions: 229690
Number of successful extensions: 491
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 39
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)