BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031527
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CQ48|NUDC2_MOUSE NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1
SV=1
Length = 157
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 8 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
E+R + G +W QTL+E+ I + +PP ++ C +QS+H+ L + G L
Sbjct: 6 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKG 64
Query: 68 ELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
+L D WTLED M +T TKRD W S + + DP+V DQ Q++L L
Sbjct: 65 KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 124
Query: 125 QRFQEENPGFDFSQAQFTGS 144
+RFQ+ENPGFDFS A+ +G+
Sbjct: 125 ERFQKENPGFDFSGAEISGN 144
>sp|Q8WVJ2|NUDC2_HUMAN NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1
SV=1
Length = 157
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 8 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
E+R + G +W QTL+E+ I + +PP ++ C +QS+H+ L + G L
Sbjct: 6 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE-ILKG 64
Query: 68 ELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
+L D WTLED M +T TKRD W S + + DP+V DQ Q++L L
Sbjct: 65 KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 124
Query: 125 QRFQEENPGFDFSQAQFTGS 144
+RFQ+ENPGFDFS A+ +G+
Sbjct: 125 ERFQKENPGFDFSGAEISGN 144
>sp|Q5M823|NUDC2_RAT NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2
PE=2 SV=1
Length = 157
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWT 81
+W QTL+E+ I + +PP ++ C +QS+H+ L + G L +L D WT
Sbjct: 20 QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWT 78
Query: 82 LEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQ 138
LED M +T TKRD W S + + DP+V DQ Q++L L+RFQ+ENPGFDFS
Sbjct: 79 LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSG 138
Query: 139 AQFTGS 144
A+ +G+
Sbjct: 139 AEISGN 144
>sp|Q9STN7|BOB2_ARATH Protein BOBBER 2 OS=Arabidopsis thaliana GN=BOB2 PE=2 SV=1
Length = 293
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 36/157 (22%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
+ W Q L E+ I I +P S+ C+I+ +++G+KG ++ E VK D FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195
Query: 81 TLEDDVM-HITLTKRDKGQTWASPIMGQ---------------GQLDP--------YVTD 116
+ED M + LTK+D+ + W + G+ G LDP + D
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255
Query: 117 QEQKRL------------MLQRFQEENPGFDFSQAQF 141
Q QK++ ML++F +NPG DFS A+F
Sbjct: 256 QRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKF 292
>sp|Q9LV09|BOB1_ARATH Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1
Length = 304
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 36/157 (22%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
+ W Q L E+ + I +P ++ C+I+ +++G+KG P ++ EL VK D +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206
Query: 81 TLED-DVMHITLTKRDKGQTWASPIMGQ---------------GQLDP--------YVTD 116
+ED V+ I LTK D+ + W + G+ G LDP + D
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMMFD 266
Query: 117 QEQKRL------------MLQRFQEENPGFDFSQAQF 141
Q QK++ +L++F E+P DFS A+F
Sbjct: 267 QRQKQMGLPTSEELQKQEILKKFMSEHPEMDFSNAKF 303
>sp|O35685|NUDC_MOUSE Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1
Length = 332
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 40/169 (23%)
Query: 14 LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + + + K IQ +H+ +G+KG PP ++ EL
Sbjct: 164 LGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGEL 223
Query: 70 TCPVKTDSSFWTLED-DVMHITLTKRDKGQTW-----ASPIMGQGQLDPY---------- 113
VK + S W +ED V+ + L K +K + W + P + +++P
Sbjct: 224 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSE 283
Query: 114 --------------------VTDQEQKRLMLQRFQEENPGFDFSQAQFT 142
+D+++K+ +L++F +++P DFS+A+F
Sbjct: 284 TRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332
>sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1
Length = 331
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 40/169 (23%)
Query: 14 LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + N + K IQ +H+ +G+KG P ++ EL
Sbjct: 163 LGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGEL 222
Query: 70 TCPVKTDSSFWTLED-DVMHITLTKRDKGQTW-----ASPIMGQGQLDPY---------- 113
VK + S W +ED V+ + L K +K + W + P + +++P
Sbjct: 223 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSE 282
Query: 114 --------------------VTDQEQKRLMLQRFQEENPGFDFSQAQFT 142
+D+++K+ +L++F +++P DFS+A+F
Sbjct: 283 TRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 331
>sp|Q17QG2|NUDC_BOVIN Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1
Length = 332
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 40/169 (23%)
Query: 14 LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + N + K IQ +H+ +G+KG P ++ EL
Sbjct: 164 LGNGADLPSYRWTQTLSELDLAVPFCVNFRLKGKDVVVDIQRRHLRVGLKGQPAIVDGEL 223
Query: 70 TCPVKTDSSFWTLED-DVMHITLTKRDKGQTW-----ASPIMGQGQLDPY---------- 113
VK + S W +ED V+ + L K +K + W + P + +++P
Sbjct: 224 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSE 283
Query: 114 --------------------VTDQEQKRLMLQRFQEENPGFDFSQAQFT 142
+D+++K+ +L++F +++P DFS+A+F
Sbjct: 284 TRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKARFN 332
>sp|Q63525|NUDC_RAT Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1
SV=1
Length = 332
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 40/169 (23%)
Query: 14 LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + + + K IQ +H+ +G+KG P ++ EL
Sbjct: 164 LGNGADLPNYRWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQAPVIDGEL 223
Query: 70 TCPVKTDSSFWTLED-DVMHITLTKRDKGQTW-----ASPIMGQGQLDPY---------- 113
VK + S W +ED V+ + L K +K + W + P + +++P
Sbjct: 224 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSE 283
Query: 114 --------------------VTDQEQKRLMLQRFQEENPGFDFSQAQFT 142
+D+++K+ +L++F +++P DFS+A+F
Sbjct: 284 TRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332
>sp|Q5ZIN1|NUDC_CHICK Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1
Length = 341
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 38/160 (23%)
Query: 21 FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
+ W QTL E+++ I + + K IQ + + +G+KG+PP ++ EL VK + S
Sbjct: 182 YRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEES 241
Query: 79 FWTLED-DVMHITLTKRDKGQTW-----ASPIMGQGQLDPY------------------- 113
W +ED + + L K +K + W P + +++P
Sbjct: 242 SWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMM 301
Query: 114 -----------VTDQEQKRLMLQRFQEENPGFDFSQAQFT 142
+D+++K+ +L++F E++P DFS+A+F
Sbjct: 302 YDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAKFN 341
>sp|Q503C8|NUDC1_DANRE NudC domain-containing protein 1 OS=Danio rerio GN=nudcd1 PE=2 SV=1
Length = 585
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 16 NGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKT 75
N ++ W QT +++ + + LP K+ + + + P L+ +L PV
Sbjct: 276 NSDPIYFWQQTEEDVTLCVRLPEGTTKDDIRFKLTVDCLRVRVGDYAPLLDGQLFAPVDP 335
Query: 76 DSSFWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRF 127
++S WT+ DD + ++L KR +G W+ ++G + + Y+ + EQK + QR
Sbjct: 336 EASTWTMNDDKSLEVSLQKRSEGPLWSEVVLGDRRGE-YLMNDEQKSQLQQRL 387
>sp|Q28IB1|NUDC1_XENTR NudC domain-containing protein 1 OS=Xenopus tropicalis GN=nudcd1
PE=2 SV=1
Length = 586
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSF 79
++ W QT +++ + LP + + K I++ +K +L +L + +SS
Sbjct: 279 LYNWHQTGEDVTLTFQLPEGMTKEDLTIKFLPGEIDISLKDQGTFLKGQLYLDIDCESSA 338
Query: 80 WTL-EDDVMHITLTKRDKGQTWASPIMGQGQ----LDPYVTDQEQKRLMLQRFQEENP 132
W + E + +TLTKR+ G TWA ++G +DP T ++LM ++ NP
Sbjct: 339 WIIKEGRSVEVTLTKREPGSTWAELVIGDKHGEYIVDPTQTAAIAEQLMHLTSEDMNP 396
>sp|Q7T0S2|NUDC1_XENLA NudC domain-containing protein 1 OS=Xenopus laevis GN=nudcd1 PE=2
SV=1
Length = 586
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSF 79
++ W QT +E+ + LP + K I++ IK +L +L V +SS
Sbjct: 279 LYNWQQTGEEVTLTFLLPEGKTKEDLNIKFLPGEIDISIKDQGTFLKGQLYSDVDCESSA 338
Query: 80 WTL-EDDVMHITLTKRDKGQTWASPIMGQGQ----LDPYVTDQEQKRLMLQRFQEENP 132
W + E + +TLTKR+ G TWA ++ Q DP T ++LM ++ NP
Sbjct: 339 WIMKEGRGVEVTLTKREPGCTWAELVIADKQGEYIADPAQTAAIAEKLMHLTSEDINP 396
>sp|Q54M64|NUDC_DICDI Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc
PE=3 SV=1
Length = 171
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 39/159 (24%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIEL-GIKGNPPYLNHELTCPVKTDSSF 79
+ W QTL++ + I L V SK + KI + H+ + + N ++ +L VK
Sbjct: 13 YTWSQTLNDCTLSIKLENPVKSKDLFIKIDNDHLTVKNLITNDTIIDGKLYKNVKKSDCN 72
Query: 80 WTLED-DVMHITLTKRDKGQTWASPIM-GQGQLDPY------------------------ 113
WTLE + I L K KGQ W S I+ G+ ++D
Sbjct: 73 WTLESGKNLEIELFKL-KGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKML 131
Query: 114 -----------VTDQEQKRLMLQRFQEENPGFDFSQAQF 141
TD+E+K+ + + F+ E+P DFS A+F
Sbjct: 132 YNQNRKAQGLPTTDEEEKQRIFETFKNEHPDMDFSNAKF 170
>sp|O60166|NUDC_SCHPO Nuclear movement protein nudc OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=nudc PE=3 SV=1
Length = 166
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 37/155 (23%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCP----VKTD 76
+EWDQT+ +++I I++P +K + S H +L I+ N P L+ P + D
Sbjct: 11 YEWDQTIADVDIVIHVPKGTRAKSLQVDM-SNH-DLKIQINVPERKVLLSGPLEKQINLD 68
Query: 77 SSFWTLED-DVMHITLTKRDKGQTWASPIMGQ-----GQLDP------------------ 112
S WT+E+ + + I L K +K + W+ I G G ++P
Sbjct: 69 ESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEK 128
Query: 113 -------YVTDQEQKRLMLQRFQEENPGFDFSQAQ 140
TD+++++ +LQ F +++P DFS +
Sbjct: 129 MMLEQSQKRTDEQKRKDVLQNFMKQHPELDFSNVR 163
>sp|Q96RS6|NUDC1_HUMAN NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1
SV=2
Length = 583
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSF 79
++ W QT D++ + I LP + + + HI + +K + +L +L + +SS
Sbjct: 277 LYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDH-QFLEGKLYSSIDHESST 335
Query: 80 WTL-EDDVMHITLTKRDKGQTWASPIMG--QGQL--DPYVTDQEQKRLMLQRFQEENPGF 134
W + E + + I+L K+++G TW ++G QG+L D +RLM +E NP
Sbjct: 336 WIIKESNSLEISLIKKNEGLTWPELVIGDKQGELIRDSAQCAAIAERLMHLTSEELNPNP 395
Query: 135 D 135
D
Sbjct: 396 D 396
>sp|P17624|NUDC_EMENI Nuclear movement protein nudC OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudC
PE=3 SV=1
Length = 198
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 80/187 (42%), Gaps = 46/187 (24%)
Query: 1 MAEKLAPEKRHRFLHNGQTV---FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELG 57
+A + A EK+ + + ++W QT+ ++++ I + N+ + ++ I++
Sbjct: 11 LAAREAEEKQRKAAEEAEQATLPYKWTQTIRDVDVTIPVSANLKGRDLDVVLKKDSIKVK 70
Query: 58 IKGN--PPYLNHELTCPVKTDSSFWTLEDDV------MHITLTKRDKGQTWA-----SPI 104
+KG +++ + P+K S WTLE + I L K ++ + WA +P
Sbjct: 71 VKGENGEVFIDGQFPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPK 130
Query: 105 MGQGQLDP------------------YVTDQEQKRL------------MLQRFQEENPGF 134
+ ++ P + DQ QK + +L++FQ+E+P
Sbjct: 131 IDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTSDEQRKMDILKKFQKEHPEM 190
Query: 135 DFSQAQF 141
DFS A+
Sbjct: 191 DFSNAKI 197
>sp|Q6PIP5|NUDC1_MOUSE NudC domain-containing protein 1 OS=Mus musculus GN=Nudcd1 PE=2
SV=2
Length = 582
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSF 79
++ W Q+ D++ + + LP + + + +I + +K + L +L + + S
Sbjct: 276 LYYWQQSEDDLTVTVRLPESSTKEDIQIQFLPDNINIKLK-DIQVLEGKLYSSIDHEGST 334
Query: 80 WTL-EDDVMHITLTKRDKGQTWASPIMG--QGQL--DPYVTDQEQKRLMLQRFQEENPGF 134
WT+ E+D + I+L K+++G W ++G QG+L DP +RLM E NP
Sbjct: 335 WTIKENDSLEISLIKKNEGLMWPELVVGDKQGELLRDPAQCAAIAERLMHLTSDELNPNP 394
Query: 135 D 135
D
Sbjct: 395 D 395
>sp|Q5RB75|NUDC3_PONAB NudC domain-containing protein 3 OS=Pongo abelii GN=NUDCD3 PE=2
SV=1
Length = 361
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 21 FEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGI---KGNPPYLNHELTCPVKTD 76
+ W Q ++ + + +P +V KQ + S I + + G + +LT + T+
Sbjct: 190 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 249
Query: 77 SSFWTLE-DDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPG-- 133
SS W+LE + + L+K G+ W + I+ +G+ +P D+ K + EE
Sbjct: 250 SSLWSLEPGKCVLVNLSK--VGEYWWNAIL-EGE-EPIDIDKINKERSMATVDEEEQAVL 305
Query: 134 ----FDFSQ 138
FD+ Q
Sbjct: 306 DRLTFDYHQ 314
>sp|Q8IVD9|NUDC3_HUMAN NudC domain-containing protein 3 OS=Homo sapiens GN=NUDCD3 PE=1
SV=3
Length = 361
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 21 FEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGI---KGNPPYLNHELTCPVKTD 76
+ W Q ++ + + +P +V KQ + S I + + G + +LT + T+
Sbjct: 190 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 249
Query: 77 SSFWTLE-DDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPG-- 133
SS W+LE + + L+K G+ W + I+ +G+ +P D+ K + EE
Sbjct: 250 SSLWSLEPGKCVLVNLSK--VGEYWWNAIL-EGE-EPIDIDKINKERSMATVDEEEQAVL 305
Query: 134 ----FDFSQ 138
FD+ Q
Sbjct: 306 DRLTFDYHQ 314
>sp|Q8R1N4|NUDC3_MOUSE NudC domain-containing protein 3 OS=Mus musculus GN=Nudcd3 PE=2
SV=3
Length = 363
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 23 WDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGI---KGNPPYLNHELTCPVKTDSS 78
W Q ++ + + +P +V KQ + S I + + G + +LT + T+SS
Sbjct: 194 WSQDYTDLEVRVPVPKHVMKGKQVSVALSSGTIRVAMVEENGERVLMEGKLTHKINTESS 253
Query: 79 FWTLE-DDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPG---- 133
W+LE + + L+K G+ W S I+ +G+ +P D+ K + EE
Sbjct: 254 LWSLEPGRCVLVNLSK--VGEYWWSAIL-EGE-EPIDIDKINKERSMATVDEEEQAVLDR 309
Query: 134 --FDFSQ 138
FD+ Q
Sbjct: 310 LTFDYHQ 316
>sp|Q92448|K6PF1_PICPA 6-phosphofructokinase OS=Komagataella pastoris GN=PFK1 PE=3 SV=1
Length = 990
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Query: 29 EINIYINLPPNVHSKQFYCKIQSKH-----IELGIKGNPPYLNHELTCPVKTDSSFWTLE 83
E+ YI+ HS+ F ++ +H + GI Y+ P +T+ W +
Sbjct: 383 ELVDYIDATAASHSRAFVVEVMGRHCGWLGLMSGIATGADYIFIPERPPSETN---W--K 437
Query: 84 DDVMHITLTKRDKGQTWASPIMGQG----QLDPYVTDQEQKRLMLQ 125
DD+ + L R+KG+ + I+ +G QL+P +T +E K ++++
Sbjct: 438 DDLKKVCLRHREKGRRKTTVIVAEGAIDDQLNP-ITSEEVKDVLVE 482
>sp|Q8RK09|HPAB1_PSESS Effector protein hopAB1 OS=Pseudomonas syringae pv. savastanoi
GN=hopAB1 PE=3 SV=1
Length = 541
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED 84
Q +D+I +++ P + K ++ ELG + + ++ +C + S +
Sbjct: 419 QVVDDIRAALDIAPQFSQLRTISKADAESEELGFRDAADHPDNATSCLFGEELSLSNPDQ 478
Query: 85 DVMHITLTKRDKGQTWASPI------MGQGQLDPYVTDQEQKRLMLQRFQEEN 131
V+ + + DK Q ++ + M +L Y+ D+ + L QR +N
Sbjct: 479 QVIGLAVNPTDKPQPYSQEVNKALTFMDMKKLAQYLADKPEHPLNRQRLDAKN 531
>sp|Q06J17|RPOB_BIGNA DNA-directed RNA polymerase subunit beta OS=Bigelowiella natans
GN=rpoB PE=3 SV=1
Length = 1099
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 15 HNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVK 74
HN + L++I +Y L +++S+ K Q+K NP Y + ++
Sbjct: 193 HNLGNFKSQKEALEKIELYSQLESSINSRNL--KNQNKITIFDRFMNPKYYDLGTRGRIQ 250
Query: 75 TDSSFWTLEDDVMHITLTKRD 95
+ F +E+ + H TLT +D
Sbjct: 251 INKKFNNIEETIQHSTLTSKD 271
>sp|P15146|MAP2_RAT Microtubule-associated protein 2 OS=Rattus norvegicus GN=Map2 PE=1
SV=3
Length = 1861
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 70 TCPVKTD---SSFWTLEDDVMHITLTKRDKGQ------TWASPIMGQGQLDPYVTDQEQK 120
TCP + S T+EDD + + T D+G+ +A+P+ + + PY D+E +
Sbjct: 1279 TCPGEHKGVVESVVTIEDDFITVVQTTTDEGELGSHSVRFAAPVQPEEERRPYPHDEELE 1338
Query: 121 RLMLQRFQEE 130
LM Q E
Sbjct: 1339 VLMAAEAQAE 1348
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,892,200
Number of Sequences: 539616
Number of extensions: 2885046
Number of successful extensions: 6007
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5971
Number of HSP's gapped (non-prelim): 32
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)