Query 031527
Match_columns 158
No_of_seqs 185 out of 878
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 15:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2265 Nuclear distribution p 100.0 7.6E-35 1.6E-39 222.1 12.0 151 2-152 2-158 (179)
2 cd06495 p23_NUDCD3_like p23-li 100.0 2.4E-28 5.2E-33 174.0 11.6 94 18-112 4-102 (102)
3 cd06492 p23_mNUDC_like p23-lik 99.9 3.6E-26 7.8E-31 158.5 10.1 84 21-104 1-87 (87)
4 cd06494 p23_NUDCD2_like p23-li 99.9 1.2E-25 2.7E-30 157.7 10.7 86 18-104 5-93 (93)
5 cd06493 p23_NUDCD1_like p23_NU 99.9 3.4E-25 7.3E-30 152.5 10.5 84 21-104 1-85 (85)
6 cd06467 p23_NUDC_like p23_like 99.9 6.5E-23 1.4E-27 140.1 11.2 84 21-104 1-85 (85)
7 cd06465 p23_hB-ind1_like p23_l 99.9 4.4E-21 9.4E-26 137.3 10.6 91 19-112 1-95 (108)
8 cd06468 p23_CacyBP p23_like do 99.8 7.8E-19 1.7E-23 121.8 10.3 84 20-104 3-92 (92)
9 PF04969 CS: CS domain; Inter 99.8 2.2E-18 4.8E-23 114.8 9.7 75 19-93 1-79 (79)
10 cd06463 p23_like Proteins cont 99.8 4.6E-18 9.9E-23 114.0 9.5 81 23-104 1-84 (84)
11 cd06466 p23_CS_SGT1_like p23_l 99.7 7.8E-18 1.7E-22 114.3 8.2 80 22-103 1-83 (84)
12 cd00237 p23 p23 binds heat sho 99.7 1.8E-17 3.8E-22 118.9 10.0 88 19-109 2-92 (106)
13 cd06469 p23_DYX1C1_like p23_li 99.7 1.6E-17 3.5E-22 111.5 8.5 78 23-104 1-78 (78)
14 cd06489 p23_CS_hSgt1_like p23_ 99.7 6.7E-17 1.4E-21 110.5 8.3 81 22-104 1-84 (84)
15 cd06488 p23_melusin_like p23_l 99.7 1.8E-16 3.9E-21 109.5 9.0 83 20-104 2-87 (87)
16 PLN03088 SGT1, suppressor of 99.7 4.5E-16 9.7E-21 132.0 12.2 131 18-150 156-350 (356)
17 KOG1309 Suppressor of G2 allel 99.7 2.9E-16 6.3E-21 120.8 9.4 129 18-148 3-190 (196)
18 KOG4379 Uncharacterized conser 99.5 1.4E-14 3E-19 124.6 8.0 126 13-139 284-414 (596)
19 KOG3158 HSP90 co-chaperone p23 99.5 6.1E-14 1.3E-18 107.4 6.2 91 18-111 7-101 (180)
20 cd06490 p23_NCB5OR p23_like do 99.4 1.1E-12 2.3E-17 90.8 8.7 81 21-103 1-86 (87)
21 cd00298 ACD_sHsps_p23-like Thi 99.1 1.7E-10 3.6E-15 75.2 6.2 70 23-93 1-80 (80)
22 KOG3260 Calcyclin-binding prot 98.7 1.4E-08 3E-13 78.8 5.1 85 19-105 75-163 (224)
23 KOG1667 Zn2+-binding protein M 98.6 1E-07 2.2E-12 77.5 7.5 96 8-105 201-303 (320)
24 COG5091 SGT1 Suppressor of G2 98.4 2.3E-07 5E-12 76.4 4.5 127 19-147 177-361 (368)
25 COG0071 IbpA Molecular chapero 98.1 3.6E-05 7.9E-10 57.6 8.9 79 17-96 39-135 (146)
26 cd06472 ACD_ScHsp26_like Alpha 97.8 0.00012 2.6E-09 50.5 7.1 73 20-93 1-92 (92)
27 PF00011 HSP20: Hsp20/alpha cr 97.6 0.00035 7.6E-09 48.6 7.5 74 22-96 1-90 (102)
28 cd06471 ACD_LpsHSP_like Group 97.5 0.00059 1.3E-08 46.9 7.1 72 20-93 2-93 (93)
29 cd06464 ACD_sHsps-like Alpha-c 97.5 0.00057 1.2E-08 45.6 6.8 70 23-93 2-88 (88)
30 PF08190 PIH1: pre-RNA process 97.0 0.0074 1.6E-07 50.2 10.0 67 25-91 258-326 (328)
31 cd06470 ACD_IbpA-B_like Alpha- 97.0 0.0068 1.5E-07 41.7 8.0 70 21-93 3-90 (90)
32 cd06497 ACD_alphaA-crystallin_ 97.0 0.0035 7.7E-08 43.0 6.5 69 24-93 6-86 (86)
33 cd06478 ACD_HspB4-5-6 Alpha-cr 96.9 0.0044 9.5E-08 42.2 6.3 68 25-93 4-83 (83)
34 cd06498 ACD_alphaB-crystallin_ 96.8 0.0049 1.1E-07 42.1 6.3 69 25-94 4-84 (84)
35 cd06479 ACD_HspB7_like Alpha c 96.8 0.0039 8.4E-08 42.5 5.5 69 24-93 4-81 (81)
36 cd06475 ACD_HspB1_like Alpha c 96.8 0.0077 1.7E-07 41.3 7.0 69 22-91 4-84 (86)
37 PRK10743 heat shock protein Ib 96.8 0.012 2.5E-07 44.0 8.5 74 19-95 35-125 (137)
38 cd06526 metazoan_ACD Alpha-cry 96.5 0.0069 1.5E-07 40.9 5.1 65 28-93 7-83 (83)
39 PRK11597 heat shock chaperone 96.5 0.019 4.2E-07 43.1 7.9 74 18-94 32-122 (142)
40 cd06476 ACD_HspB2_like Alpha c 96.1 0.031 6.8E-07 38.1 6.8 67 26-93 5-83 (83)
41 cd06481 ACD_HspB9_like Alpha c 95.8 0.037 8.1E-07 37.9 5.9 65 26-91 5-85 (87)
42 PF05455 GvpH: GvpH; InterPro 94.8 0.24 5.2E-06 38.6 8.3 71 23-96 96-170 (177)
43 cd06477 ACD_HspB3_Like Alpha c 94.6 0.26 5.6E-06 33.6 7.1 65 26-91 5-81 (83)
44 cd06482 ACD_HspB10 Alpha cryst 91.1 0.46 9.9E-06 32.7 4.3 64 26-90 6-84 (87)
45 cd06480 ACD_HspB8_like Alpha-c 87.6 3.4 7.5E-05 28.6 6.6 65 26-91 13-89 (91)
46 KOG2265 Nuclear distribution p 76.5 0.66 1.4E-05 36.1 -0.5 29 114-142 151-179 (179)
47 KOG3247 Uncharacterized conser 70.6 3.9 8.4E-05 36.0 2.7 83 18-103 3-88 (466)
48 PF05002 SGS: SGS domain ; In 67.6 2.7 5.8E-05 28.8 0.9 36 114-149 36-77 (82)
49 COG3354 FlaG Putative archaeal 63.6 17 0.00037 27.6 4.6 69 18-93 60-130 (154)
50 cd06464 ACD_sHsps-like Alpha-c 57.4 32 0.0007 22.0 4.8 35 25-59 53-87 (88)
51 KOG0710 Molecular chaperone (s 54.9 25 0.00055 27.5 4.5 76 20-96 84-182 (196)
52 cd00298 ACD_sHsps_p23-like Thi 49.4 46 0.001 20.2 4.4 32 27-58 47-78 (80)
53 cd06526 metazoan_ACD Alpha-cry 44.6 50 0.0011 21.7 4.2 31 28-58 50-81 (83)
54 PF14447 Prok-RING_4: Prokaryo 42.1 17 0.00037 23.0 1.4 20 131-150 34-53 (55)
55 PF00011 HSP20: Hsp20/alpha cr 41.7 47 0.001 22.4 3.8 35 25-59 52-86 (102)
56 cd06497 ACD_alphaA-crystallin_ 36.4 51 0.0011 22.1 3.2 30 29-58 54-84 (86)
57 PF10929 DUF2811: Protein of u 30.8 43 0.00092 21.3 1.9 15 122-136 12-26 (57)
58 KOG3591 Alpha crystallins [Pos 30.8 2.5E+02 0.0054 21.6 6.9 68 28-96 72-151 (173)
59 KOG4079 Putative mitochondrial 29.5 58 0.0012 24.7 2.7 36 115-151 110-152 (169)
60 PF13349 DUF4097: Domain of un 23.8 1.2E+02 0.0027 21.9 3.7 28 29-56 119-146 (166)
61 PRK05090 hypothetical protein; 21.6 2.1E+02 0.0046 19.9 4.2 35 25-60 6-40 (95)
62 COG1470 Predicted membrane pro 21.2 1.3E+02 0.0029 27.2 3.8 24 28-51 444-467 (513)
63 cd03485 MutL_Trans_hPMS_1_like 20.8 83 0.0018 22.6 2.2 29 29-61 88-116 (132)
64 cd03483 MutL_Trans_MLH1 MutL_T 20.3 54 0.0012 23.6 1.1 29 29-61 83-111 (127)
No 1
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-35 Score=222.07 Aligned_cols=151 Identities=34% Similarity=0.510 Sum_probs=121.3
Q ss_pred CCCCCcccccccccCCCCcEEEEeeCCEEEEEEEcCCCC-CCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCcee
Q 031527 2 AEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80 (158)
Q Consensus 2 ~~~~~~~~~~~~~~ng~~~Y~W~Qt~~~V~I~i~lp~~~-~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w 80 (158)
.+++.++.|+.++.++.+.|+|+||..+|.|.|+||+++ ++++|.|.|..++|+|+++|++++++|+|+++|++++|+|
T Consensus 2 ~~~~~eE~p~~~ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~des~W 81 (179)
T KOG2265|consen 2 DEKPKEEKPNSGNGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDESTW 81 (179)
T ss_pred CccccccCCcccCCccccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCccccccccccceE
Confidence 356666778888888899999999999999999999999 9999999999999999999988899999999999999999
Q ss_pred EeeCCe-EEEEEEecCCCCCCCCCcCCCCCCCCCccHH-H-HHHHHHHHHHHhCCCCCCCCCCCCCC--CCCccccc
Q 031527 81 TLEDDV-MHITLTKRDKGQTWASPIMGQGQLDPYVTDQ-E-QKRLMLQRFQEENPGFDFSQAQFTGS--CPDPRTFM 152 (158)
Q Consensus 81 ~i~~~~-l~i~L~K~~~~~~W~~L~~~~~~id~~~~de-~-~~~~~l~~~~~~~~~~df~~~~~~g~--~~dp~~~~ 152 (158)
+|++++ |.+.|+|.+.+.||.+|++|+++||+...+. . +..++.+++|+..+.|+|+++.+.++ .+|+..+|
T Consensus 82 tiEd~k~i~i~l~K~~~~eWW~~ll~gep~ID~~ki~~e~skl~dldeEtra~vekmmfdq~qk~~~~p~sde~~~~ 158 (179)
T KOG2265|consen 82 TIEDGKMIVILLKKSNKMEWWDSLLEGEPEIDTKKIEPEESKLSDLDEETRATVEKMMFDQRQKSMGLPTSDELKKH 158 (179)
T ss_pred EecCCEEEEEEeeccchHHHHHHHHcCCCCCCccccChhhhhhhhccHHHHHhhhccchhHHHhhcCCCCCchhhHH
Confidence 999986 6777888776799999999999999754333 1 23444455555555555555555555 44444443
No 2
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.96 E-value=2.4e-28 Score=174.00 Aligned_cols=94 Identities=21% Similarity=0.531 Sum_probs=86.4
Q ss_pred CCcEEEEeeCCEEEEEEEcCCC-CCCCceEEEeeccEEEEEecC---CCceecCCCCCCcccCCceeEeeCCe-EEEEEE
Q 031527 18 QTVFEWDQTLDEINIYINLPPN-VHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDV-MHITLT 92 (158)
Q Consensus 18 ~~~Y~W~Qt~~~V~I~i~lp~~-~~~kdv~V~i~~~~l~v~v~g---~~~~l~g~L~~~I~~deS~w~i~~~~-l~i~L~ 92 (158)
.+.|+|+||.++|+|+|+||++ +++||+.|+|++++|+|++++ +.++|+|+||++|++|+|+|+|++++ |+|+|.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~ 83 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLS 83 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEE
Confidence 4789999999999999999998 579999999999999999974 34799999999999999999999975 899999
Q ss_pred ecCCCCCCCCCcCCCCCCCC
Q 031527 93 KRDKGQTWASPIMGQGQLDP 112 (158)
Q Consensus 93 K~~~~~~W~~L~~~~~~id~ 112 (158)
|... .||++|++|+++||.
T Consensus 84 K~~~-~wW~~v~~g~~~iD~ 102 (102)
T cd06495 84 KCSE-VWWNAVLKGEEEIDI 102 (102)
T ss_pred ECCC-cccchhhCCCCcCCC
Confidence 9975 799999999999984
No 3
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.94 E-value=3.6e-26 Score=158.50 Aligned_cols=84 Identities=33% Similarity=0.682 Sum_probs=79.4
Q ss_pred EEEEeeCCEEEEEEEcCCC--CCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCC-eEEEEEEecCCC
Q 031527 21 FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKG 97 (158)
Q Consensus 21 Y~W~Qt~~~V~I~i~lp~~--~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~-~l~i~L~K~~~~ 97 (158)
|+|+||.++|+|+|+||.+ ++++|++|+|++++|+|+++|++++++|+||++|++|+|+|+++++ .|+|+|.|++++
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~~~~ 80 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINKM 80 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccEEEEeCCCEEEEEEEECCCC
Confidence 8999999999999999887 8999999999999999999997789999999999999999999996 699999999887
Q ss_pred CCCCCCc
Q 031527 98 QTWASPI 104 (158)
Q Consensus 98 ~~W~~L~ 104 (158)
.||++|+
T Consensus 81 ~wW~~l~ 87 (87)
T cd06492 81 EWWSRLV 87 (87)
T ss_pred ccccccC
Confidence 8999985
No 4
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.93 E-value=1.2e-25 Score=157.67 Aligned_cols=86 Identities=38% Similarity=0.657 Sum_probs=80.5
Q ss_pred CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCCe-EEEEEEecCC
Q 031527 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDV-MHITLTKRDK 96 (158)
Q Consensus 18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~~-l~i~L~K~~~ 96 (158)
++.|.|+||.++|+|+|+||++++++|+.|.|++++|+|+++|+ .+|+|+||++|++|+|+|++++++ |+|+|.|+++
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~-~~l~G~L~~~I~~destWtled~k~l~I~L~K~~~ 83 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ-EVLKGKLFDSVVADECTWTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE-EEEcCcccCccCcccCEEEEECCcEEEEEEEeCCC
Confidence 57899999999999999999999999999999999999999986 599999999999999999999998 6999999974
Q ss_pred --CCCCCCCc
Q 031527 97 --GQTWASPI 104 (158)
Q Consensus 97 --~~~W~~L~ 104 (158)
|.+|++|+
T Consensus 84 ~~~~~W~sl~ 93 (93)
T cd06494 84 DAGNCWKSLL 93 (93)
T ss_pred CCCccccccC
Confidence 36999985
No 5
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.93 E-value=3.4e-25 Score=152.52 Aligned_cols=84 Identities=26% Similarity=0.648 Sum_probs=78.8
Q ss_pred EEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCC-eEEEEEEecCCCCC
Q 031527 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKGQT 99 (158)
Q Consensus 21 Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~-~l~i~L~K~~~~~~ 99 (158)
|.|+||.++|+|+|++|++++++|++|+|++++|+|.+++.+++++|+||+.|++++|+|+++++ +|+|+|.|++++.+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~~~~ 80 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDEGPT 80 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCCCcc
Confidence 89999999999999999999999999999999999999865578999999999999999999876 69999999998789
Q ss_pred CCCCc
Q 031527 100 WASPI 104 (158)
Q Consensus 100 W~~L~ 104 (158)
|++|+
T Consensus 81 W~~L~ 85 (85)
T cd06493 81 WPELV 85 (85)
T ss_pred ccccC
Confidence 99985
No 6
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.90 E-value=6.5e-23 Score=140.06 Aligned_cols=84 Identities=45% Similarity=0.830 Sum_probs=79.5
Q ss_pred EEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeC-CeEEEEEEecCCCCC
Q 031527 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED-DVMHITLTKRDKGQT 99 (158)
Q Consensus 21 Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~-~~l~i~L~K~~~~~~ 99 (158)
|.|+||.++|+|+|++|++++++|+.|+|++++|+|++++..++++|.||++|++++|+|++++ ++|+|+|.|++++.+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~~~~ 80 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNEGEW 80 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCCCcc
Confidence 8999999999999999999999999999999999999986568899999999999999999999 899999999987679
Q ss_pred CCCCc
Q 031527 100 WASPI 104 (158)
Q Consensus 100 W~~L~ 104 (158)
|++|+
T Consensus 81 W~~L~ 85 (85)
T cd06467 81 WPSLV 85 (85)
T ss_pred ccccC
Confidence 99986
No 7
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.86 E-value=4.4e-21 Score=137.29 Aligned_cols=91 Identities=20% Similarity=0.353 Sum_probs=80.7
Q ss_pred CcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC----CceecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527 19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN----PPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (158)
Q Consensus 19 ~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~----~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~ 94 (158)
|.|.|+||.++|+|+|++|. .+++.|.|++++|+|++.+. .+.++++||++|++++|+|++.+++|+|+|+|+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~---~~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~ 77 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPD---AKDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKK 77 (108)
T ss_pred CceeeeECCCEEEEEEEeCC---CCCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEEC
Confidence 57999999999999999984 38999999999999988642 257899999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCC
Q 031527 95 DKGQTWASPIMGQGQLDP 112 (158)
Q Consensus 95 ~~~~~W~~L~~~~~~id~ 112 (158)
+.+.+|++|.+++++++.
T Consensus 78 ~~~~~W~~L~~~~~k~~~ 95 (108)
T cd06465 78 EAGEYWPRLTKEKGKLPW 95 (108)
T ss_pred CCCCCCcccccCCCCCCc
Confidence 833699999999987763
No 8
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.79 E-value=7.8e-19 Score=121.77 Aligned_cols=84 Identities=21% Similarity=0.413 Sum_probs=72.8
Q ss_pred cEEEEeeCCEEEEEEEcCCCCC--CCceEEEeeccEEEEEecC---CCc-eecCCCCCCcccCCceeEeeCCeEEEEEEe
Q 031527 20 VFEWDQTLDEINIYINLPPNVH--SKQFYCKIQSKHIELGIKG---NPP-YLNHELTCPVKTDSSFWTLEDDVMHITLTK 93 (158)
Q Consensus 20 ~Y~W~Qt~~~V~I~i~lp~~~~--~kdv~V~i~~~~l~v~v~g---~~~-~l~g~L~~~I~~deS~w~i~~~~l~i~L~K 93 (158)
+|.|+||.++|+|+|.+|.... ++++.|.|++++|+|.+.+ .++ +..+.||++|++++|+|++.+++|+|+|+|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K 82 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLAK 82 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEEe
Confidence 6999999999999999985533 5999999999999998854 222 344579999999999999999999999999
Q ss_pred cCCCCCCCCCc
Q 031527 94 RDKGQTWASPI 104 (158)
Q Consensus 94 ~~~~~~W~~L~ 104 (158)
+++ .+|++|.
T Consensus 83 ~~~-~~W~~L~ 92 (92)
T cd06468 83 KKE-KKWESLT 92 (92)
T ss_pred CCC-CccCccC
Confidence 987 7999984
No 9
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.78 E-value=2.2e-18 Score=114.81 Aligned_cols=75 Identities=28% Similarity=0.534 Sum_probs=66.4
Q ss_pred CcEEEEeeCCEEEEEEEc-CCCCCCCceEEEeeccEEEEEec-C--CCceecCCCCCCcccCCceeEeeCCeEEEEEEe
Q 031527 19 TVFEWDQTLDEINIYINL-PPNVHSKQFYCKIQSKHIELGIK-G--NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTK 93 (158)
Q Consensus 19 ~~Y~W~Qt~~~V~I~i~l-p~~~~~kdv~V~i~~~~l~v~v~-g--~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K 93 (158)
|+|.|+||.++|+|+|++ +..++++|+.|.|++++|+|.++ + ..++++++||++|++++|+|++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 689999999999999999 54578999999999999999986 2 346789999999999999999999999999998
No 10
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.76 E-value=4.6e-18 Score=114.02 Aligned_cols=81 Identities=35% Similarity=0.581 Sum_probs=74.0
Q ss_pred EEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---CCceecCCCCCCcccCCceeEeeCCeEEEEEEecCCCCC
Q 031527 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQT 99 (158)
Q Consensus 23 W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~~~~ 99 (158)
|+|+.++|+|+|.+|.. .++++.|.+++++|+|++.+ ..+.+++.|+++|++++|+|++.++.|+|+|.|+.++.+
T Consensus 1 W~Q~~~~v~i~v~~~~~-~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~ 79 (84)
T cd06463 1 WYQTLDEVTITIPLKDV-TKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEW 79 (84)
T ss_pred CcccccEEEEEEEcCCC-CccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCC
Confidence 99999999999999954 48999999999999999874 456799999999999999999999999999999988689
Q ss_pred CCCCc
Q 031527 100 WASPI 104 (158)
Q Consensus 100 W~~L~ 104 (158)
|++|+
T Consensus 80 W~~l~ 84 (84)
T cd06463 80 WPRLE 84 (84)
T ss_pred CcccC
Confidence 99984
No 11
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.74 E-value=7.8e-18 Score=114.33 Aligned_cols=80 Identities=23% Similarity=0.372 Sum_probs=73.0
Q ss_pred EEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEeeCCeEEEEEEecCCCC
Q 031527 22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQ 98 (158)
Q Consensus 22 ~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~~~ 98 (158)
.|+||.++|+|+|.+| ++.++++.|.+++++|.|.+. +..+.++.+||++|++++|+|++.+++|+|+|+|+.+ .
T Consensus 1 dW~Qt~~~v~i~v~~~-~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~-~ 78 (84)
T cd06466 1 DWYQTDTSVTVTIYAK-NVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEP-G 78 (84)
T ss_pred CccccCCEEEEEEEEC-CCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCC-C
Confidence 4999999999999987 788999999999999999875 2346789999999999999999999999999999987 6
Q ss_pred CCCCC
Q 031527 99 TWASP 103 (158)
Q Consensus 99 ~W~~L 103 (158)
+|++|
T Consensus 79 ~W~~L 83 (84)
T cd06466 79 SWPSL 83 (84)
T ss_pred CCccC
Confidence 99998
No 12
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.74 E-value=1.8e-17 Score=118.86 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=78.5
Q ss_pred CcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEeeCCeEEEEEEecC
Q 031527 19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRD 95 (158)
Q Consensus 19 ~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~ 95 (158)
|.+.|+|+.+.|+|+|.++. ++|++|+|++++|+|... |..+.++.+||++|++++|++++.+++|+|.|+|++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d---~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED---SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGK 78 (106)
T ss_pred CcceeeECCCEEEEEEEeCC---CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCC
Confidence 67999999999999999984 789999999999999864 344568889999999999999999999999999998
Q ss_pred CCCCCCCCcCCCCC
Q 031527 96 KGQTWASPIMGQGQ 109 (158)
Q Consensus 96 ~~~~W~~L~~~~~~ 109 (158)
++.+|++|++...+
T Consensus 79 ~~~~WprL~k~~~k 92 (106)
T cd00237 79 EGVAWPRLTKEKAK 92 (106)
T ss_pred CCCCCchhhcCCCC
Confidence 66689999997654
No 13
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.73 E-value=1.6e-17 Score=111.55 Aligned_cols=78 Identities=19% Similarity=0.396 Sum_probs=71.4
Q ss_pred EEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCCeEEEEEEecCCCCCCCC
Q 031527 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWAS 102 (158)
Q Consensus 23 W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~~~~W~~ 102 (158)
|+||.++|+|+|.+| +++++++.|.+++++|+|.. ..+.+.++|+++|++++|+|++++++|+|+|.|+++ .+|++
T Consensus 1 W~Qt~~~v~i~i~~p-~v~~~~v~v~~~~~~l~i~~--~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~-~~W~~ 76 (78)
T cd06469 1 WSQTDEDVKISVPLK-GVKTSKVDIFCSDLYLKVNF--PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP-GIWEA 76 (78)
T ss_pred CcccCCEEEEEEEeC-CCccccceEEEecCEEEEcC--CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC-Ccccc
Confidence 999999999999999 68999999999999888766 346789999999999999999999999999999987 69999
Q ss_pred Cc
Q 031527 103 PI 104 (158)
Q Consensus 103 L~ 104 (158)
|.
T Consensus 77 L~ 78 (78)
T cd06469 77 LC 78 (78)
T ss_pred cC
Confidence 83
No 14
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.70 E-value=6.7e-17 Score=110.55 Aligned_cols=81 Identities=21% Similarity=0.351 Sum_probs=72.6
Q ss_pred EEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---CCceecCCCCCCcccCCceeEeeCCeEEEEEEecCCCC
Q 031527 22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQ 98 (158)
Q Consensus 22 ~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~~~ 98 (158)
.|+|+.+.|+|+|.++ ++..+++.|+|++++|+|++++ ..+.++.+||++|+|++|+|++.+++|+|.|+|+++ .
T Consensus 1 dW~Q~~~~V~iti~~k-~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-~ 78 (84)
T cd06489 1 DWYQTESQVVITILIK-NVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEA-I 78 (84)
T ss_pred CccccCCEEEEEEEEC-CCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCC-C
Confidence 4999999999999875 7888999999999999998753 346789999999999999999999999999999975 6
Q ss_pred CCCCCc
Q 031527 99 TWASPI 104 (158)
Q Consensus 99 ~W~~L~ 104 (158)
+|++|.
T Consensus 79 ~W~~Le 84 (84)
T cd06489 79 RWSKLE 84 (84)
T ss_pred CCccCC
Confidence 999983
No 15
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.69 E-value=1.8e-16 Score=109.51 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=72.9
Q ss_pred cEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEeeCCeEEEEEEecCC
Q 031527 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDK 96 (158)
Q Consensus 20 ~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~ 96 (158)
+|.|+||.+.|+|+|.++ ++..+++.|.+++++|+|.+. +..+.+..+||++|+|+.|+|++.+++|+|.|+|+++
T Consensus 2 R~dW~Qs~~~V~ItI~~k-~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAK-NSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CccEeeCCCEEEEEEEEC-cCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence 699999999999999874 888999999999999887553 3345678899999999999999999999999999987
Q ss_pred CCCCCCCc
Q 031527 97 GQTWASPI 104 (158)
Q Consensus 97 ~~~W~~L~ 104 (158)
..|++|.
T Consensus 81 -~~W~~Le 87 (87)
T cd06488 81 -GSWAKLE 87 (87)
T ss_pred -CcCccCC
Confidence 5899983
No 16
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.68 E-value=4.5e-16 Score=131.98 Aligned_cols=131 Identities=21% Similarity=0.310 Sum_probs=109.4
Q ss_pred CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (158)
Q Consensus 18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~ 94 (158)
..+|.|+||.+.|+|+|.+. ++...++.|+|++++|+|.+. +..+.+..+||++|+|+.|+++|...+|+|+|+|+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k-~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~ 234 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAK-GVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKA 234 (356)
T ss_pred ccccceeecCCEEEEEEEec-CCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEecceEEEEEecC
Confidence 46899999999999999875 889999999999999998874 33455778999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCC-------------------------CCCCC------------------------------ccHHHH
Q 031527 95 DKGQTWASPIMGQG-------------------------QLDPY------------------------------VTDQEQ 119 (158)
Q Consensus 95 ~~~~~W~~L~~~~~-------------------------~id~~------------------------------~~de~~ 119 (158)
+. ..|++|...+. ..|+. ..|++.
T Consensus 235 ~~-~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f~~iY~~~d~d~ 313 (356)
T PLN03088 235 EP-ITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNADEDT 313 (356)
T ss_pred CC-CCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHHHHHHhcCCHHH
Confidence 86 68999974421 01110 368899
Q ss_pred HHHHHHHHHHhCC-----CC-CCCCCCCCCCCCCccc
Q 031527 120 KRLMLQRFQEENP-----GF-DFSQAQFTGSCPDPRT 150 (158)
Q Consensus 120 ~~~~l~~~~~~~~-----~~-df~~~~~~g~~~dp~~ 150 (158)
||.|++.|++.++ +| |....++.+.||++-.
T Consensus 314 rram~KSf~eS~gt~lstnw~~v~~~~~e~~pp~g~e 350 (356)
T PLN03088 314 RRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGME 350 (356)
T ss_pred HHHHHHHhhhcCCeEEeccHHHhcCCccccCCCCCCc
Confidence 9999999999877 77 7888999999998753
No 17
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=99.67 E-value=2.9e-16 Score=120.82 Aligned_cols=129 Identities=23% Similarity=0.346 Sum_probs=105.3
Q ss_pred CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (158)
Q Consensus 18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~ 94 (158)
..+|.|+||.++|+|+|. .+++..+||.|.|+.+.|++.++ |..+.+.+.||++|.|+.|++++...+|+|+|.|+
T Consensus 3 k~r~DwyQt~~~vvIti~-~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIF-AKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred cccceeecCCceEEEEEE-ecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence 468999999999999995 46899999999999998887665 34466888999999999999999999999999997
Q ss_pred CCCCCCCCCcCCCCC---------------------CCCC-----------------------------ccHHHHHHHHH
Q 031527 95 DKGQTWASPIMGQGQ---------------------LDPY-----------------------------VTDQEQKRLML 124 (158)
Q Consensus 95 ~~~~~W~~L~~~~~~---------------------id~~-----------------------------~~de~~~~~~l 124 (158)
+. ..|..|.+|.+. .|+. .++++.||+|+
T Consensus 82 ~~-irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e~l~dAAl~~lF~kiY~~addDvrRAM~ 160 (196)
T KOG1309|consen 82 EI-IRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDEKLEDAALNKLFQKIYSDADDDVRRAMM 160 (196)
T ss_pred cc-hhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 64 899999965431 1110 25888899999
Q ss_pred HHHHHhCC-----CC-CCCCCCCCCCCCCc
Q 031527 125 QRFQEENP-----GF-DFSQAQFTGSCPDP 148 (158)
Q Consensus 125 ~~~~~~~~-----~~-df~~~~~~g~~~dp 148 (158)
+.|.+.++ +| |...-.+.-+|||.
T Consensus 161 KSf~ESnGTvLSTnW~eVg~kkve~~PP~g 190 (196)
T KOG1309|consen 161 KSFSESNGTVLSTNWSEVGKKKVETKPPDG 190 (196)
T ss_pred hhhhhcCCeEEeccHHHhccceeeecCCCC
Confidence 99998877 66 56666688888875
No 18
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=99.54 E-value=1.4e-14 Score=124.59 Aligned_cols=126 Identities=21% Similarity=0.349 Sum_probs=110.4
Q ss_pred cccCCCCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeC-CeEEEEE
Q 031527 13 FLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED-DVMHITL 91 (158)
Q Consensus 13 ~~~ng~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~-~~l~i~L 91 (158)
+...|.|.|.|.||.+++.|++.+|...+++++.|.+..++|.+...++ .+|+|+||+.|..+.|.|.|.. ++|++.|
T Consensus 284 ~e~~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~dh-~~~~g~lyasv~he~s~~ii~ean~Le~sl 362 (596)
T KOG4379|consen 284 LENGGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHLDH-VIFDGELYASVGHELSAFIIAEANGLELSL 362 (596)
T ss_pred hhccCCccceeeeccCcceEEEecccccccceEEEEecCceEEEEeeee-EEeccchhhhccccchhhhhhhhccceEEE
Confidence 3444568999999999999999999999999999999999999988765 8999999999999999999987 7999999
Q ss_pred EecCCCCCCCCCcCCC--CCCC--CCccHHHHHHHHHHHHHHhCCCCCCCCC
Q 031527 92 TKRDKGQTWASPIMGQ--GQLD--PYVTDQEQKRLMLQRFQEENPGFDFSQA 139 (158)
Q Consensus 92 ~K~~~~~~W~~L~~~~--~~id--~~~~de~~~~~~l~~~~~~~~~~df~~~ 139 (158)
.|++.+..|++|+.++ ++|| .+.++...+++|.-.+++-||.-|-+-.
T Consensus 363 ~K~de~~twprL~~~dksGEideDveiCad~aEkLisveyeel~p~ed~e~p 414 (596)
T KOG4379|consen 363 TKADEIQTWPRLFAQDKSGEIDEDVEICADVAEKLISVEYEELHPMEDPELP 414 (596)
T ss_pred eecccccccchheeecccccchhhhHHHHHHHHHhhccchhhcCCCCCCCCC
Confidence 9998888999999887 4776 4567888899999999998997765533
No 19
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=6.1e-14 Score=107.37 Aligned_cols=91 Identities=13% Similarity=0.235 Sum_probs=79.3
Q ss_pred CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC----CceecCCCCCCcccCCceeEeeCCeEEEEEEe
Q 031527 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN----PPYLNHELTCPVKTDSSFWTLEDDVMHITLTK 93 (158)
Q Consensus 18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~----~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K 93 (158)
.|...|+|+.+-|+++|.|+ .+++++|+++++.|.++.++. .++++.+||+.|+|++|..++.++.|.+.|+|
T Consensus 7 ~p~v~Waqr~~~vyltv~Ve---d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K 83 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVE---DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRK 83 (180)
T ss_pred CCcchhhhhcCeEEEEEEec---cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEc
Confidence 46799999999999999999 688999999999999987642 23466899999999999999998889999999
Q ss_pred cCCCCCCCCCcCCCCCCC
Q 031527 94 RDKGQTWASPIMGQGQLD 111 (158)
Q Consensus 94 ~~~~~~W~~L~~~~~~id 111 (158)
++.+.+|++|++...++.
T Consensus 84 ~e~~~~WprLtkeK~K~h 101 (180)
T KOG3158|consen 84 KELGEYWPRLTKEKAKLH 101 (180)
T ss_pred cccccccchhhhcccccc
Confidence 887789999999887654
No 20
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.42 E-value=1.1e-12 Score=90.78 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=66.1
Q ss_pred EEEEeeCCEEEEEEEcCC-CCCCCceEEEeeccEEEEEec--CCCceecCCCCCCcccCCceeEee--CCeEEEEEEecC
Q 031527 21 FEWDQTLDEINIYINLPP-NVHSKQFYCKIQSKHIELGIK--GNPPYLNHELTCPVKTDSSFWTLE--DDVMHITLTKRD 95 (158)
Q Consensus 21 Y~W~Qt~~~V~I~i~lp~-~~~~kdv~V~i~~~~l~v~v~--g~~~~l~g~L~~~I~~deS~w~i~--~~~l~i~L~K~~ 95 (158)
|.|+||.+.|+|+|..+. +.+..++.+.+..++|+|.+. +....++.+|+++|+++ |+.++. .++|+|.|+|++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~-~~~~~~~~~~KVEI~L~K~e 79 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWP-CEVRISTETGKIELVLKKKE 79 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCC-cEEEEcccCceEEEEEEcCC
Confidence 689999999999998654 556777888888888888764 44456788999999755 488888 569999999998
Q ss_pred CCCCCCCC
Q 031527 96 KGQTWASP 103 (158)
Q Consensus 96 ~~~~W~~L 103 (158)
+ ..|++|
T Consensus 80 ~-~~W~~L 86 (87)
T cd06490 80 P-EKWTSL 86 (87)
T ss_pred C-CccccC
Confidence 7 689987
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.13 E-value=1.7e-10 Score=75.21 Aligned_cols=70 Identities=29% Similarity=0.402 Sum_probs=62.2
Q ss_pred EEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC----------CCceecCCCCCCcccCCceeEeeCCeEEEEEE
Q 031527 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG----------NPPYLNHELTCPVKTDSSFWTLEDDVMHITLT 92 (158)
Q Consensus 23 W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g----------~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~ 92 (158)
|+|+.+.|+|+|.+| +..++++.|.++++.|.|.... ....+...|++.|+++.|+|++.++.|.|.|.
T Consensus 1 ~~q~~~~v~i~i~~~-~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 899999999999998 5678999999999999998652 23457788999999999999999999999998
Q ss_pred e
Q 031527 93 K 93 (158)
Q Consensus 93 K 93 (158)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 22
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=98.74 E-value=1.4e-08 Score=78.77 Aligned_cols=85 Identities=20% Similarity=0.401 Sum_probs=73.6
Q ss_pred CcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCc-eecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527 19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPP-YLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (158)
Q Consensus 19 ~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~-~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~ 94 (158)
..|.|.|+...|.++|.|. |+...+|.|.|++.+|.+.++ |..+ ++-.+|+++|.++.|+-.+....|.|.++|.
T Consensus 75 t~ygWDQs~kfVK~yItL~-GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkV 153 (224)
T KOG3260|consen 75 TLYGWDQSNKFVKMYITLE-GVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKV 153 (224)
T ss_pred hhcCccccCCeeEEEEEee-cccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhh
Confidence 3599999999999999995 888999999999999999876 4432 4667899999999999999999999999887
Q ss_pred CCCCCCCCCcC
Q 031527 95 DKGQTWASPIM 105 (158)
Q Consensus 95 ~~~~~W~~L~~ 105 (158)
+. ..|..|..
T Consensus 154 e~-~rwd~Lt~ 163 (224)
T KOG3260|consen 154 EN-TRWDYLTQ 163 (224)
T ss_pred hc-ccchHHHH
Confidence 65 78998863
No 23
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=98.64 E-value=1e-07 Score=77.47 Aligned_cols=96 Identities=19% Similarity=0.311 Sum_probs=72.9
Q ss_pred ccccccccCCC---CcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCce-ecCCCCCCcccCCcee
Q 031527 8 EKRHRFLHNGQ---TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPY-LNHELTCPVKTDSSFW 80 (158)
Q Consensus 8 ~~~~~~~~ng~---~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~-l~g~L~~~I~~deS~w 80 (158)
.++|+...+-. -+|.|.||...|+|.|.-. +.....-.|......|.|.+. |+..+ ++-+|++-|++++|+-
T Consensus 201 ~GeH~w~k~~~V~~cR~Dwhqt~~~Vti~VY~k-~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v 279 (320)
T KOG1667|consen 201 SGEHKWRKNEIVVKCRHDWHQTNGFVTINVYAK-GALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSV 279 (320)
T ss_pred ccchhhhccCccccchhhhhhcCCeEEEEEEec-cCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceE
Confidence 45566555442 3899999999999999854 434445566777777776654 33222 5678999999999999
Q ss_pred EeeCCeEEEEEEecCCCCCCCCCcC
Q 031527 81 TLEDDVMHITLTKRDKGQTWASPIM 105 (158)
Q Consensus 81 ~i~~~~l~i~L~K~~~~~~W~~L~~ 105 (158)
.+...+|+|+|.|+++ ..|++|--
T Consensus 280 ~m~~tkVEIsl~k~ep-~sWa~Le~ 303 (320)
T KOG1667|consen 280 VMGETKVEISLKKAEP-GSWARLEF 303 (320)
T ss_pred EeecceEEEEEeccCC-CCcccccC
Confidence 9999999999999998 57999943
No 24
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=98.43 E-value=2.3e-07 Score=76.43 Aligned_cols=127 Identities=19% Similarity=0.233 Sum_probs=97.1
Q ss_pred CcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---C-CceecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527 19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---N-PPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (158)
Q Consensus 19 ~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---~-~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~ 94 (158)
-+|.|+||...+.|.|.-| .+...+|++.+.++.|+|.++- . ...+...||+.|.|+-++.++-...++++|+|.
T Consensus 177 i~yd~s~Ts~t~~ifiy~~-pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV 255 (368)
T COG5091 177 IAYDFSETSDTAIIFIYRP-PVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKV 255 (368)
T ss_pred eeeeccccceeEEEEEecC-CCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhh
Confidence 4799999999999998644 5678889999999999988752 1 123556899999999999999888899999998
Q ss_pred CCCCCCCCCcCCCC-----------------------CCCCC-------------------------ccHHHHHHHHHHH
Q 031527 95 DKGQTWASPIMGQG-----------------------QLDPY-------------------------VTDQEQKRLMLQR 126 (158)
Q Consensus 95 ~~~~~W~~L~~~~~-----------------------~id~~-------------------------~~de~~~~~~l~~ 126 (158)
+. ..|..|..... ++|+. -+|++-||.|++.
T Consensus 256 ~~-v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~ps~~dslFqklY~~addDtrRAMmKS 334 (368)
T COG5091 256 EM-VRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENPSVMDSLFQKLYQRADDDTRRAMMKS 334 (368)
T ss_pred hh-hhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCchHHHHHHHHHHhcCCchHHHHHHHH
Confidence 75 78998875321 12211 2588899999999
Q ss_pred HHHhCC-----CC-CCCCCCCCCCCCC
Q 031527 127 FQEENP-----GF-DFSQAQFTGSCPD 147 (158)
Q Consensus 127 ~~~~~~-----~~-df~~~~~~g~~~d 147 (158)
|-+.++ +| |.+.-.|.-.||.
T Consensus 335 f~ESnGTaLSTdW~dVkskt~~t~pPe 361 (368)
T COG5091 335 FYESNGTALSTDWDDVKSKTITTEPPE 361 (368)
T ss_pred HhhcCCceecccHHHhhcCceecCCCC
Confidence 998876 55 5666667666664
No 25
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3.6e-05 Score=57.64 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=66.6
Q ss_pred CCCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCC------------------ceecCCCCCCcccCCc
Q 031527 17 GQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP------------------PYLNHELTCPVKTDSS 78 (158)
Q Consensus 17 g~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~------------------~~l~g~L~~~I~~deS 78 (158)
+.|.|...++.+++.|++.|| |++++||+|.+..+.|.|+..-.. ..-.-.|...|+++..
T Consensus 39 ~~P~vdi~e~~~~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELP-GVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcC-CCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 578999999999999999998 899999999999999888764210 0122359999999988
Q ss_pred eeEeeCCeEEEEEEecCC
Q 031527 79 FWTLEDDVMHITLTKRDK 96 (158)
Q Consensus 79 ~w~i~~~~l~i~L~K~~~ 96 (158)
.-++.+|.|.|+|.|.++
T Consensus 118 ~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeEeeCcEEEEEEecccc
Confidence 899999999999999875
No 26
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.79 E-value=0.00012 Score=50.50 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=58.0
Q ss_pred cEEEEeeCCEEEEEEEcCCCCCCCceEEEeecc-EEEEEecC--------CC----------ceecCCCCCCcccCCcee
Q 031527 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSK-HIELGIKG--------NP----------PYLNHELTCPVKTDSSFW 80 (158)
Q Consensus 20 ~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~-~l~v~v~g--------~~----------~~l~g~L~~~I~~deS~w 80 (158)
++.|.++.+.+.|.+.|| |++++|+.|.+..+ .|.|+..- .. ..-.-.|...|+++.-+.
T Consensus 1 ~~dv~E~~~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEE
Confidence 367999999999999998 78999999999865 78886531 00 111235888999998899
Q ss_pred EeeCCeEEEEEEe
Q 031527 81 TLEDDVMHITLTK 93 (158)
Q Consensus 81 ~i~~~~l~i~L~K 93 (158)
++.+|.|.|+|-|
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 9999999999876
No 27
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.62 E-value=0.00035 Score=48.60 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=56.1
Q ss_pred EEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC------Cc--------ee--cCCCCCCcccCCceeEeeCC
Q 031527 22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN------PP--------YL--NHELTCPVKTDSSFWTLEDD 85 (158)
Q Consensus 22 ~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~------~~--------~l--~g~L~~~I~~deS~w~i~~~ 85 (158)
.|.++.+.+.|.+.|| ++.+++++|.+..+.|.|...-. .. -| .-.|...|+++.-+.++++|
T Consensus 1 di~e~~~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECC-CCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 4789999999999998 88999999999999988865311 11 11 23588899999989999999
Q ss_pred eEEEEEEecCC
Q 031527 86 VMHITLTKRDK 96 (158)
Q Consensus 86 ~l~i~L~K~~~ 96 (158)
.|.|++-|...
T Consensus 80 vL~I~~pk~~~ 90 (102)
T PF00011_consen 80 VLTITIPKKEE 90 (102)
T ss_dssp EEEEEEEBSSS
T ss_pred EEEEEEEcccc
Confidence 99999999865
No 28
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.49 E-value=0.00059 Score=46.94 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=56.6
Q ss_pred cEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCC---------ce---------ec--CCCCCCcccCCce
Q 031527 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP---------PY---------LN--HELTCPVKTDSSF 79 (158)
Q Consensus 20 ~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~---------~~---------l~--g~L~~~I~~deS~ 79 (158)
+..+.++.+.+.|.+.|| |++++|++|.+..+.|.|+..-.. .+ |. -.|. .|+++...
T Consensus 2 ~~di~e~~~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence 468899999999999998 899999999999999998653110 01 11 1354 68888888
Q ss_pred eEeeCCeEEEEEEe
Q 031527 80 WTLEDDVMHITLTK 93 (158)
Q Consensus 80 w~i~~~~l~i~L~K 93 (158)
.++.+|.|.|+|-|
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999876
No 29
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.48 E-value=0.00057 Score=45.60 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=57.0
Q ss_pred EEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----------------CceecCCCCCCcccCCceeEeeCC
Q 031527 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----------------PPYLNHELTCPVKTDSSFWTLEDD 85 (158)
Q Consensus 23 W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----------------~~~l~g~L~~~I~~deS~w~i~~~ 85 (158)
+.++.+.+.|.+.|| ++.++++.|.+..+.|.|..+-. ...-.-.|...|+++..+.++.+|
T Consensus 2 i~e~~~~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 2 VYETDDAYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred cEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 568889999999998 68999999999999999874311 012233599999999999999999
Q ss_pred eEEEEEEe
Q 031527 86 VMHITLTK 93 (158)
Q Consensus 86 ~l~i~L~K 93 (158)
.|.|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999865
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.02 E-value=0.0074 Score=50.16 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=57.5
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeC--CeEEEEE
Q 031527 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED--DVMHITL 91 (158)
Q Consensus 25 Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~--~~l~i~L 91 (158)
...+.+.|+|.||.-.+.+++.++++++.|.|.+.+..+.|+..|..+|+.+.+.-++.. +.|.|+|
T Consensus 258 ~~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl 326 (328)
T PF08190_consen 258 GSPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL 326 (328)
T ss_pred CCCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence 346899999999965599999999999999999986447899999999999998877765 4788887
No 31
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.99 E-value=0.0068 Score=41.68 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=52.0
Q ss_pred EEEEee-CCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC------C-----------ceecCCCCCCcccCCceeEe
Q 031527 21 FEWDQT-LDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN------P-----------PYLNHELTCPVKTDSSFWTL 82 (158)
Q Consensus 21 Y~W~Qt-~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~------~-----------~~l~g~L~~~I~~deS~w~i 82 (158)
+.=.++ .+...|.+.|| ++++.|++|.+..+.|.|+..-. . ..-.-.|...|+.+ ..++
T Consensus 3 ~di~e~~~~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~ 79 (90)
T cd06470 3 YNIEKTGENNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL 79 (90)
T ss_pred eeeEEcCCCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE
Confidence 344455 48999999998 89999999999999999974310 0 11123477888875 6789
Q ss_pred eCCeEEEEEEe
Q 031527 83 EDDVMHITLTK 93 (158)
Q Consensus 83 ~~~~l~i~L~K 93 (158)
++|.|.|+|.+
T Consensus 80 ~~GvL~I~l~~ 90 (90)
T cd06470 80 ENGLLTIDLER 90 (90)
T ss_pred eCCEEEEEEEC
Confidence 99999999864
No 32
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.98 E-value=0.0035 Score=42.97 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=55.2
Q ss_pred EeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cce----e--cCCCCCCcccCCceeEe-eCCeEEEEE
Q 031527 24 DQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTL-EDDVMHITL 91 (158)
Q Consensus 24 ~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~deS~w~i-~~~~l~i~L 91 (158)
..+.+.+.|.+.|| |++++|++|++..+.|.|+..-. ..+ | .-.|...|+++.-+-++ .+|.|.|+|
T Consensus 6 ~e~~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 6 RSDRDKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence 45788999999998 89999999999999998875311 112 2 23588899999999999 789999998
Q ss_pred Ee
Q 031527 92 TK 93 (158)
Q Consensus 92 ~K 93 (158)
-|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 66
No 33
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.90 E-value=0.0044 Score=42.16 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=53.4
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cce----e--cCCCCCCcccCCceeEe-eCCeEEEEEE
Q 031527 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTL-EDDVMHITLT 92 (158)
Q Consensus 25 Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~deS~w~i-~~~~l~i~L~ 92 (158)
.+.+.+.|.+.|| |++++||+|++..+.|.|..+-. .-+ | .-.|...|+++.-+-++ .+|.|.|+|-
T Consensus 4 ~~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 5678999999998 89999999999999998865311 112 2 23588889988888898 5889999886
Q ss_pred e
Q 031527 93 K 93 (158)
Q Consensus 93 K 93 (158)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 5
No 34
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.85 E-value=0.0049 Score=42.13 Aligned_cols=69 Identities=13% Similarity=0.240 Sum_probs=54.7
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cce----e--cCCCCCCcccCCceeEee-CCeEEEEEE
Q 031527 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTLE-DDVMHITLT 92 (158)
Q Consensus 25 Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~deS~w~i~-~~~l~i~L~ 92 (158)
-+.+...|.+.|| +++++|++|++..+.|.|..+-+ ..+ | .-.|...|+++.-+-++. +|.|.|+|-
T Consensus 4 ~~~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lP 82 (84)
T cd06498 4 LEKDKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGP 82 (84)
T ss_pred eCCceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEe
Confidence 3578899999997 89999999999999999876411 111 1 225888999999999995 899999997
Q ss_pred ec
Q 031527 93 KR 94 (158)
Q Consensus 93 K~ 94 (158)
|.
T Consensus 83 k~ 84 (84)
T cd06498 83 RK 84 (84)
T ss_pred CC
Confidence 74
No 35
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=96.82 E-value=0.0039 Score=42.47 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=54.5
Q ss_pred EeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec--CCC--c---e-ecCCCCCCcccCCceeEe-eCCeEEEEEEe
Q 031527 24 DQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK--GNP--P---Y-LNHELTCPVKTDSSFWTL-EDDVMHITLTK 93 (158)
Q Consensus 24 ~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~--g~~--~---~-l~g~L~~~I~~deS~w~i-~~~~l~i~L~K 93 (158)
..+.+.+.|.+.|| +++++||+|++..+.|+|... ... . + =.-.|+..|+++.-+-++ .+|.|.|+|.+
T Consensus 4 ~e~~~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 35788999999998 899999999999999998653 110 1 1 123589999999999998 88999999864
No 36
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.80 E-value=0.0077 Score=41.28 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=54.5
Q ss_pred EEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCC-----ce----e--cCCCCCCcccCCceeEee-CCeEEE
Q 031527 22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP-----PY----L--NHELTCPVKTDSSFWTLE-DDVMHI 89 (158)
Q Consensus 22 ~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~-----~~----l--~g~L~~~I~~deS~w~i~-~~~l~i 89 (158)
.+..+.+.+.|.+.|| |+++++++|++..+.|.|+.+-+. .+ | .-.|...|+++.-.-++. +|.|.|
T Consensus 4 ~i~e~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 4 EIRQTADRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred eEEEcCCeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 5678999999999998 899999999999999998764211 11 1 224778888888888887 888888
Q ss_pred EE
Q 031527 90 TL 91 (158)
Q Consensus 90 ~L 91 (158)
+|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 76
No 37
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.79 E-value=0.012 Score=43.96 Aligned_cols=74 Identities=9% Similarity=0.097 Sum_probs=58.8
Q ss_pred CcEEEEe-eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC------CCce--------e--cCCCCCCcccCCceeE
Q 031527 19 TVFEWDQ-TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG------NPPY--------L--NHELTCPVKTDSSFWT 81 (158)
Q Consensus 19 ~~Y~W~Q-t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g------~~~~--------l--~g~L~~~I~~deS~w~ 81 (158)
|++.-.+ +.+.+.|.+.|| |++++||+|.+..+.|.|+..- ..++ | .-.|...|+.+. -+
T Consensus 35 p~~di~ee~~~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVA-GFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence 7788884 899999999998 8999999999999999987531 1111 1 124788898883 88
Q ss_pred eeCCeEEEEEEecC
Q 031527 82 LEDDVMHITLTKRD 95 (158)
Q Consensus 82 i~~~~l~i~L~K~~ 95 (158)
+++|.|.|+|-|+.
T Consensus 112 ~~dGVL~I~lPK~~ 125 (137)
T PRK10743 112 LVNGLLYIDLERVI 125 (137)
T ss_pred EeCCEEEEEEeCCC
Confidence 89999999999963
No 38
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.52 E-value=0.0069 Score=40.88 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=51.9
Q ss_pred CEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----------CceecCCCCCCcccCCceeEeeC-CeEEEEEEe
Q 031527 28 DEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----------PPYLNHELTCPVKTDSSFWTLED-DVMHITLTK 93 (158)
Q Consensus 28 ~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----------~~~l~g~L~~~I~~deS~w~i~~-~~l~i~L~K 93 (158)
+.+.|.+.|| +++++||+|.+..+.|.|..+-+ ...-.-.|...|+++.-+-++.+ |.|.|++.|
T Consensus 7 ~~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 5889999998 79999999999999999876411 01123358899999988889987 899998865
No 39
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.50 E-value=0.019 Score=43.12 Aligned_cols=74 Identities=9% Similarity=0.152 Sum_probs=57.3
Q ss_pred CCcEEEEe-eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC------CCce--------ec--CCCCCCcccCCcee
Q 031527 18 QTVFEWDQ-TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG------NPPY--------LN--HELTCPVKTDSSFW 80 (158)
Q Consensus 18 ~~~Y~W~Q-t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g------~~~~--------l~--g~L~~~I~~deS~w 80 (158)
.|.+.=.+ +.+.+.|++.|| |++++||+|.+..+.|+|+... ..++ |. -.|...|+++ .-
T Consensus 32 ~P~vdI~e~~~~~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A 108 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA 108 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence 36677776 567899999998 8999999999999999997641 1111 11 2377888887 58
Q ss_pred EeeCCeEEEEEEec
Q 031527 81 TLEDDVMHITLTKR 94 (158)
Q Consensus 81 ~i~~~~l~i~L~K~ 94 (158)
++++|.|.|+|-|.
T Consensus 109 ~~~nGVL~I~lPK~ 122 (142)
T PRK11597 109 TFVNGLLHIDLIRN 122 (142)
T ss_pred EEcCCEEEEEEecc
Confidence 89999999999986
No 40
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=96.15 E-value=0.031 Score=38.07 Aligned_cols=67 Identities=10% Similarity=0.189 Sum_probs=51.8
Q ss_pred eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Ccee------cCCCCCCcccCCceeEee-CCeEEEEEEe
Q 031527 26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPYL------NHELTCPVKTDSSFWTLE-DDVMHITLTK 93 (158)
Q Consensus 26 t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~l------~g~L~~~I~~deS~w~i~-~~~l~i~L~K 93 (158)
..+...|.+.|| ++++.|++|++..+.|.|..+-. .-+. .-.|...|+++.-+-++. +|.|.|+|-|
T Consensus 5 ~~d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 456788999998 88999999999999999865411 0121 124888999999999996 8999998854
No 41
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=95.77 E-value=0.037 Score=37.92 Aligned_cols=65 Identities=11% Similarity=0.258 Sum_probs=49.6
Q ss_pred eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---C----Cce------e--cCCCCCCcccCCceeEe-eCCeEEE
Q 031527 26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---N----PPY------L--NHELTCPVKTDSSFWTL-EDDVMHI 89 (158)
Q Consensus 26 t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---~----~~~------l--~g~L~~~I~~deS~w~i-~~~~l~i 89 (158)
..+.+.|.+.|| +++++||.|++..+.|.|..+- . ..+ | .-.|...|+++.-.-.+ .+|.|.|
T Consensus 5 ~~d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I 83 (87)
T cd06481 5 GKEGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHI 83 (87)
T ss_pred ccceEEEEEECC-CCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEE
Confidence 356789999998 8899999999999999986531 0 011 1 22488899999888888 7888888
Q ss_pred EE
Q 031527 90 TL 91 (158)
Q Consensus 90 ~L 91 (158)
++
T Consensus 84 ~~ 85 (87)
T cd06481 84 RA 85 (87)
T ss_pred Ec
Confidence 75
No 42
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=94.84 E-value=0.24 Score=38.59 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=50.4
Q ss_pred EEeeCC-EEEEEEEcCCCCCCCc-eEEEeecc--EEEEEecCCCceecCCCCCCcccCCceeEeeCCeEEEEEEecCC
Q 031527 23 WDQTLD-EINIYINLPPNVHSKQ-FYCKIQSK--HIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDK 96 (158)
Q Consensus 23 W~Qt~~-~V~I~i~lp~~~~~kd-v~V~i~~~--~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~ 96 (158)
=.+..+ ++.|...|| ++...+ +.|.+..+ .|.+.+.+. ++=...|..+ .++--.+++..+.|+|.|+|.++
T Consensus 96 tre~dDge~~VvAdLP-GVs~dd~idV~l~~d~~~L~i~~~~~-~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 96 TRERDDGELVVVADLP-GVSDDDAIDVTLDDDEGALTIRVGEK-YLKRVALPWP-DPEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred eEecCCCcEEEEEeCC-CCCcccceeeEeecCCceEEEecCCc-eEeeEecCCC-ccceeeEEEeCceEEEEEeecCC
Confidence 334556 799999998 676666 88888754 555555443 4444467766 45655889999999999999875
No 43
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=94.57 E-value=0.26 Score=33.63 Aligned_cols=65 Identities=8% Similarity=0.109 Sum_probs=49.1
Q ss_pred eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cce----e--cCCCCCCcccCCceeEe-eCCeEEEEE
Q 031527 26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTL-EDDVMHITL 91 (158)
Q Consensus 26 t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~deS~w~i-~~~~l~i~L 91 (158)
+.+...|.+.|| ++++.||+|++..+.|+|...-. .-+ | .-.|...|+++.-+-++ .+|.|.|.-
T Consensus 5 ~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 5 GKPMFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET 81 (83)
T ss_pred CCceEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence 567889999998 89999999999999999976411 111 1 12488889999888887 677777753
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=91.13 E-value=0.46 Score=32.70 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=47.4
Q ss_pred eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC---C-----ce----ec--CCCCCCcccCCceeEeeCC-eEEEE
Q 031527 26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN---P-----PY----LN--HELTCPVKTDSSFWTLEDD-VMHIT 90 (158)
Q Consensus 26 t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~---~-----~~----l~--g~L~~~I~~deS~w~i~~~-~l~i~ 90 (158)
..+.+.|++.|| |++++||+|++..+.|+|...-+ + .+ |. -.|...|+.+.-+-++.++ .|.|.
T Consensus 6 ~~~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 357899999998 89999999999999999976411 0 01 11 2477888888888888876 56653
No 45
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=87.60 E-value=3.4 Score=28.60 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=46.5
Q ss_pred eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cceec------CCCCCCcccCCceeEee-CCeEEEEE
Q 031527 26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPYLN------HELTCPVKTDSSFWTLE-DDVMHITL 91 (158)
Q Consensus 26 t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~l~------g~L~~~I~~deS~w~i~-~~~l~i~L 91 (158)
+.+.-.|.+.+. +.+..||.|++..+.|.|..+-+ .-++. -.|...|+++.-+-.+. +|.|.|.+
T Consensus 13 ~~~~f~v~ldv~-gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 13 SSEPWKVCVNVH-SFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCcEEEEEEeC-CCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 344556777775 88999999999999999965411 01211 24888889998888888 67787764
No 46
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=76.51 E-value=0.66 Score=36.12 Aligned_cols=29 Identities=38% Similarity=0.746 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 031527 114 VTDQEQKRLMLQRFQEENPGFDFSQAQFT 142 (158)
Q Consensus 114 ~~de~~~~~~l~~~~~~~~~~df~~~~~~ 142 (158)
+.||..++.+|++|+.+||++||++|.|+
T Consensus 151 ~sde~~~~d~Lkk~~~~~~~~~f~~a~~~ 179 (179)
T KOG2265|consen 151 TSDELKKHDMLKKFMDQHPEMDFSNAKFN 179 (179)
T ss_pred CCchhhHHHHHHHHHHhCCCCCCchhccC
Confidence 78999999999999999999999999985
No 47
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.61 E-value=3.9 Score=36.03 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=61.6
Q ss_pred CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCc---eeEeeCCeEEEEEEec
Q 031527 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS---FWTLEDDVMHITLTKR 94 (158)
Q Consensus 18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS---~w~i~~~~l~i~L~K~ 94 (158)
+|.+.=+|.++.+++.|+.| -.+++.+.+....+.+.+.+. ++++...+.+.+..+.. .+-..++.+.|.+-|.
T Consensus 3 tp~f~itqdee~~~L~I~~p-~~~a~~le~~a~~nm~~f~~~--pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK~~K~ 79 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRP-LNQASKLEIDAAANMASFSAG--PYFLRLAGPGMVEDDARPNASYDAKDGYAHVKVPKF 79 (466)
T ss_pred CceeeeeecCceEEEEeecc-ccchhccchhhHhhhhhhccc--hhHHhhcCcchhhhhccccCccccccceeEEeecCC
Confidence 46788899999999999988 446777887777777777663 46777778887766654 2444567899999998
Q ss_pred CCCCCCCCC
Q 031527 95 DKGQTWASP 103 (158)
Q Consensus 95 ~~~~~W~~L 103 (158)
.+++..+.|
T Consensus 80 ~~~e~F~~L 88 (466)
T KOG3247|consen 80 HPGEHFSDL 88 (466)
T ss_pred Cccccccch
Confidence 776656544
No 48
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=67.60 E-value=2.7 Score=28.75 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=14.3
Q ss_pred ccHHHHHHHHHHHHHHhCC-----CC-CCCCCCCCCCCCCcc
Q 031527 114 VTDQEQKRLMLQRFQEENP-----GF-DFSQAQFTGSCPDPR 149 (158)
Q Consensus 114 ~~de~~~~~~l~~~~~~~~-----~~-df~~~~~~g~~~dp~ 149 (158)
..|++.||.|.+.|++.++ +| +....++...|||+-
T Consensus 36 ~gDDe~KRam~KSf~ES~GT~LSTnW~eV~~~~~~~~pp~g~ 77 (82)
T PF05002_consen 36 NGDDEMKRAMMKSFTESQGTVLSTNWDEVGKKKVEPSPPDGM 77 (82)
T ss_dssp TS-SCHHHHHHHHHHCT-------------------------
T ss_pred cCCHHHHHHHHHHHHHcCCcccccchhccchhhhcccccccc
Confidence 4788899999999998875 66 677888888898864
No 49
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=63.61 E-value=17 Score=27.55 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=46.1
Q ss_pred CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCCeE--EEEEEe
Q 031527 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVM--HITLTK 93 (158)
Q Consensus 18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~~l--~i~L~K 93 (158)
.++|.-+-.....+++|+ ++- +..+-+++++++|-+.|+ +..+.--.-+.++.+.|++.+|.| ++++--
T Consensus 60 ~i~~~~~~g~~t~t~yiK---NtG--~~~~~fd~~sitVliDG~--iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~ 130 (154)
T COG3354 60 QIPYVGTDGPYTYTFYIK---NTG--SDSIAFDNTSITVLIDGN--IVTPAYVTFTSVNGSSIRLSPGQVGREVTVNE 130 (154)
T ss_pred CCccccCCCceEEEEEEe---cCC--CcccccCCCeEEEEEcCc--EeccceEEEEecCCCeeEecCCceeeEEEecc
Confidence 456666555566677763 432 356788999999999885 445555555788899999887643 555543
No 50
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=57.43 E-value=32 Score=22.03 Aligned_cols=35 Identities=9% Similarity=0.288 Sum_probs=29.5
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec
Q 031527 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK 59 (158)
Q Consensus 25 Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~ 59 (158)
.......-.|+||.+++.+.++..+...-|.|.+.
T Consensus 53 ~~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~p 87 (88)
T cd06464 53 RSYGSFSRSFRLPEDVDPDKIKASLENGVLTITLP 87 (88)
T ss_pred EeCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEEc
Confidence 34577888899999999999999999988888763
No 51
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=54.90 E-value=25 Score=27.49 Aligned_cols=76 Identities=14% Similarity=0.333 Sum_probs=52.2
Q ss_pred cEEE--EeeCCEEEEEEEcCCCCCCCceEEEeeccE-EEEEecCC---C----------------ce-ecCCCCCCcccC
Q 031527 20 VFEW--DQTLDEINIYINLPPNVHSKQFYCKIQSKH-IELGIKGN---P----------------PY-LNHELTCPVKTD 76 (158)
Q Consensus 20 ~Y~W--~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~-l~v~v~g~---~----------------~~-l~g~L~~~I~~d 76 (158)
+..| .++.+...+.+.+| ++.+.+++|.+...+ +.|.-... + .+ -.-.|...|+.+
T Consensus 84 ~~~~~v~e~~~~~~~~~~~P-gl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d 162 (196)
T KOG0710|consen 84 RVPWDVKESPDAHEFKVDLP-GLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVD 162 (196)
T ss_pred cCCcccccCCCceEEEeeCC-CCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHH
Confidence 5678 68999999999998 667999999999885 55532210 0 00 112366666666
Q ss_pred CceeEeeCCeEEEEEEecCC
Q 031527 77 SSFWTLEDDVMHITLTKRDK 96 (158)
Q Consensus 77 eS~w~i~~~~l~i~L~K~~~ 96 (158)
+=.-.+.++.|.|++.|...
T Consensus 163 ~ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 163 EIKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred HHHHHhhCCeEEEEEecccc
Confidence 55566667788888888765
No 52
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=49.37 E-value=46 Score=20.17 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=25.8
Q ss_pred CCEEEEEEEcCCCCCCCceEEEeeccEEEEEe
Q 031527 27 LDEINIYINLPPNVHSKQFYCKIQSKHIELGI 58 (158)
Q Consensus 27 ~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v 58 (158)
.......+.||..+....+...+....|.|.+
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l 78 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITL 78 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEE
Confidence 45667788899888888888888888887765
No 53
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=44.65 E-value=50 Score=21.69 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.7
Q ss_pred CEEEEEEEcCCCCCCCceEEEeec-cEEEEEe
Q 031527 28 DEINIYINLPPNVHSKQFYCKIQS-KHIELGI 58 (158)
Q Consensus 28 ~~V~I~i~lp~~~~~kdv~V~i~~-~~l~v~v 58 (158)
.+..-+|.||.+++.+.++..+.. .-|.|.+
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~ 81 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDGVLTIEA 81 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCcEEEEEe
Confidence 467888999999999999999998 7888765
No 54
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=42.08 E-value=17 Score=22.96 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCCCCCccc
Q 031527 131 NPGFDFSQAQFTGSCPDPRT 150 (158)
Q Consensus 131 ~~~~df~~~~~~g~~~dp~~ 150 (158)
.|+.+++|+||=|.++|+..
T Consensus 34 f~~~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 34 FPGERYNGCPFCGTPFEFDD 53 (55)
T ss_pred cChhhccCCCCCCCcccCCC
Confidence 46789999999999999863
No 55
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=41.74 E-value=47 Score=22.36 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=26.5
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec
Q 031527 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK 59 (158)
Q Consensus 25 Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~ 59 (158)
++.....-+|+||.++..+.++..+...-|.|.+.
T Consensus 52 ~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~p 86 (102)
T PF00011_consen 52 RRYGSFERSIRLPEDVDPDKIKASYENGVLTITIP 86 (102)
T ss_dssp S-SEEEEEEEE-STTB-GGG-EEEETTSEEEEEEE
T ss_pred cccceEEEEEcCCCcCCcceEEEEecCCEEEEEEE
Confidence 34567778899999999999999999889999875
No 56
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=36.39 E-value=51 Score=22.12 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=25.1
Q ss_pred EEEEEEEcCCCCCCCceEEEe-eccEEEEEe
Q 031527 29 EINIYINLPPNVHSKQFYCKI-QSKHIELGI 58 (158)
Q Consensus 29 ~V~I~i~lp~~~~~kdv~V~i-~~~~l~v~v 58 (158)
+..=+|.||.+++...|+..+ ...-|.|.+
T Consensus 54 ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 54 EFHRRYRLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence 367789999999999999999 577888776
No 57
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=30.78 E-value=43 Score=21.34 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=12.0
Q ss_pred HHHHHHHHhCCCCCC
Q 031527 122 LMLQRFQEENPGFDF 136 (158)
Q Consensus 122 ~~l~~~~~~~~~~df 136 (158)
..|..|-+.||+||-
T Consensus 12 ~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 12 QAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHcCCCchH
Confidence 457788889999983
No 58
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=30.76 E-value=2.5e+02 Score=21.60 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=47.0
Q ss_pred CEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cce----ec--CCCCCCcccCCceeEeeC-CeEEEEEEecC
Q 031527 28 DEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----LN--HELTCPVKTDSSFWTLED-DVMHITLTKRD 95 (158)
Q Consensus 28 ~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~----l~--g~L~~~I~~deS~w~i~~-~~l~i~L~K~~ 95 (158)
+...|.+.|. .....++.|+...+.|.|..+-+ .-+ |. -.|...|+++.=+-+|.. |.|.|...|..
T Consensus 72 ~~F~V~lDV~-~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 72 DKFEVNLDVH-QFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred CcEEEEEEcc-cCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 4455666664 66788899999988888865411 111 21 259999999987777764 68899888865
Q ss_pred C
Q 031527 96 K 96 (158)
Q Consensus 96 ~ 96 (158)
.
T Consensus 151 ~ 151 (173)
T KOG3591|consen 151 P 151 (173)
T ss_pred C
Confidence 3
No 59
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=29.49 E-value=58 Score=24.65 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCC-C------CCCCCCCCCcccc
Q 031527 115 TDQEQKRLMLQRFQEENPGFDFS-Q------AQFTGSCPDPRTF 151 (158)
Q Consensus 115 ~de~~~~~~l~~~~~~~~~~df~-~------~~~~g~~~dp~~~ 151 (158)
.+|..+++.+++.+..||+ ||. + |++.||+|=|+++
T Consensus 110 tee~lr~Ee~ek~~k~nPA-nFG~~c~R~CiCEv~GQvPCpglv 152 (169)
T KOG4079|consen 110 TEEVLRREELEKIAKLNPA-NFGSKCERQCICEVQGQVPCPGLV 152 (169)
T ss_pred cHHHHhHHHHHHHhhcChh-hhcccccceEEEecCCcCCCCccc
Confidence 4566677777888888883 453 2 3589999999877
No 60
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=23.84 E-value=1.2e+02 Score=21.88 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=13.0
Q ss_pred EEEEEEEcCCCCCCCceEEEeeccEEEE
Q 031527 29 EINIYINLPPNVHSKQFYCKIQSKHIEL 56 (158)
Q Consensus 29 ~V~I~i~lp~~~~~kdv~V~i~~~~l~v 56 (158)
...|+|.||++.+-+++++......+.+
T Consensus 119 ~~~i~I~lP~~~~l~~i~i~~~~G~i~i 146 (166)
T PF13349_consen 119 KSKITIYLPKDYKLDKIDIKTSSGDITI 146 (166)
T ss_pred CcEEEEEECCCCceeEEEEEeccccEEE
Confidence 3444444555443344555554444443
No 61
>PRK05090 hypothetical protein; Validated
Probab=21.58 E-value=2.1e+02 Score=19.89 Aligned_cols=35 Identities=11% Similarity=0.285 Sum_probs=25.2
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC
Q 031527 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60 (158)
Q Consensus 25 Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g 60 (158)
++.+.+.|.|.|.++.+...+ +.+....|+|.+.-
T Consensus 6 ~~~~~~~l~i~V~P~A~~~~i-~~~~~~~lkv~v~A 40 (95)
T PRK05090 6 WDGDGLVLRLYIQPKASRDQI-VGLHGDELKVAITA 40 (95)
T ss_pred EeCCeEEEEEEEeeCCCccee-ccccCCEEEEEEec
Confidence 477788999988887654433 34667889998863
No 62
>COG1470 Predicted membrane protein [Function unknown]
Probab=21.18 E-value=1.3e+02 Score=27.18 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=18.0
Q ss_pred CEEEEEEEcCCCCCCCceEEEeec
Q 031527 28 DEINIYINLPPNVHSKQFYCKIQS 51 (158)
Q Consensus 28 ~~V~I~i~lp~~~~~kdv~V~i~~ 51 (158)
..|.++|.+|+++.+-|..|.|+.
T Consensus 444 ~tV~ltI~vP~~a~aGdY~i~i~~ 467 (513)
T COG1470 444 KTVSLTITVPEDAGAGDYRITITA 467 (513)
T ss_pred ceEEEEEEcCCCCCCCcEEEEEEE
Confidence 467888888888888777777753
No 63
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=20.77 E-value=83 Score=22.64 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=22.0
Q ss_pred EEEEEEEcCCCCCCCceEEEeeccEEEEEecCC
Q 031527 29 EINIYINLPPNVHSKQFYCKIQSKHIELGIKGN 61 (158)
Q Consensus 29 ~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~ 61 (158)
-..|.|.+| +..|+|++.+++-.|.+..+
T Consensus 88 ~~~L~i~~~----~~~vDVNVhP~K~eV~f~~e 116 (132)
T cd03485 88 VFFLNILCP----PGLVDVNIEPDKDDVLLQNK 116 (132)
T ss_pred EEEEEEEcC----CCceeeccCCccCEEEEcCh
Confidence 456677777 45699999999888888764
No 64
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=20.27 E-value=54 Score=23.57 Aligned_cols=29 Identities=7% Similarity=0.236 Sum_probs=21.7
Q ss_pred EEEEEEEcCCCCCCCceEEEeeccEEEEEecCC
Q 031527 29 EINIYINLPPNVHSKQFYCKIQSKHIELGIKGN 61 (158)
Q Consensus 29 ~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~ 61 (158)
-+.+.|.+| +..|+|++.+++..|.+..+
T Consensus 83 ~~~L~i~i~----p~~vDVNVHP~K~eV~f~~e 111 (127)
T cd03483 83 FVYLSLEIP----PENVDVNVHPTKREVHFLNE 111 (127)
T ss_pred EEEEEEEeC----hHHeeeccCCCccEEEecCH
Confidence 355667776 45788999999888888764
Done!