BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031531
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJK|A Chain A, Solution Structure Of Hypothetical Protein C330018d20rik
           From Mus Musculus
          Length = 100

 Score = 38.1 bits (87), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 15/89 (16%)

Query: 50  LVLYSKPGCCLCDGLKEKLQA---AFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPV 106
           L L++K  C LCD  KE LQ     F+L       +VD+ + + +T   W + Y+++IPV
Sbjct: 19  LTLFTKAPCPLCDEAKEVLQPYKDRFIL------QEVDITLPENST---WYERYKFDIPV 69

Query: 107 LARVLSDGTEVLMACINRFRIEAWLSQMS 135
                 +G  ++M  +N  ++E  L ++S
Sbjct: 70  FH---LNGQFLMMHRVNTSKLEKQLRKLS 95


>pdb|2FGX|A Chain A, Solution Nmr Structure Of Protein Ne2328 From Nitrosomonas
           Europaea. Northeast Structural Genomics Consortium
           Target Net3
          Length = 107

 Score = 32.0 bits (71), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 48  RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVL 107
           RKLV+Y + GC LC    E++ A+  +    S    +L+V +I  N    + Y   +PVL
Sbjct: 30  RKLVVYGREGCHLC----EEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDRVPVL 83

Query: 108 ARVLSD 113
             V  D
Sbjct: 84  FAVNED 89


>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
           Vii
          Length = 141

 Score = 26.6 bits (57), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 77  PDSLHDVDLQVRDITTNPEWEKSYQYE 103
           PD  H ++ +V+    NP W +++ +E
Sbjct: 57  PDKKHKLETKVKRKNLNPHWNETFLFE 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,448,200
Number of Sequences: 62578
Number of extensions: 115770
Number of successful extensions: 380
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 4
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)