BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031531
         (158 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q05530|YD286_YEAST Glutaredoxin-like protein YDR286C OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=YDR286C PE=3 SV=1
          Length = 114

 Score = 42.4 bits (98), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 49  KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD--VDLQVRDITT--NPEWEKSYQYEI 104
           KL  +SKP C LCD  KE +   F        H+  V L++ +IT   N +W K Y ++I
Sbjct: 22  KLTFFSKPNCGLCDQAKEVIDDVFERK---EFHNKAVSLEIVNITDRRNAKWWKEYCFDI 78

Query: 105 PVL 107
           PVL
Sbjct: 79  PVL 81


>sp|Q9CWB7|YD286_MOUSE Glutaredoxin-like protein C5orf63 homolog OS=Mus musculus PE=1 SV=1
          Length = 115

 Score = 38.5 bits (88), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 15/98 (15%)

Query: 41  SSSSSSTRKLVLYSKPGCCLCDGLKEKLQA---AFLLSGPDSLHDVDLQVRDITTNPEWE 97
           S+S+ +   L L++K  C LCD  KE LQ     F+L       +VD+ + + +T   W 
Sbjct: 23  SASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFIL------QEVDITLPENST---WY 73

Query: 98  KSYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQMS 135
           + Y+++IPV      +G  ++M  +N  ++E  L ++ 
Sbjct: 74  ERYKFDIPVFH---LNGQFLMMHRVNTSKLEKQLRKLE 108


>sp|O74802|HIBCH_SCHPO 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=ehd3 PE=3 SV=1
          Length = 429

 Score = 33.1 bits (74), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 72  FLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEI 104
           ++L  PD +  V+ Q+   T NP+W KS++Y  
Sbjct: 359 YMLKQPDFVEGVNAQLITKTKNPKWSKSHEYHF 391


>sp|Q05266|VG56_BPML5 Gene 56 protein OS=Mycobacterium phage L5 GN=56 PE=4 SV=1
          Length = 103

 Score = 32.3 bits (72), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 13/58 (22%)

Query: 50  LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVL 107
           + +Y++PGC  C+ +K+KL AA           +D    D+T N E   +Y Y   VL
Sbjct: 21  VTVYTRPGCKPCERVKDKLTAA----------GIDFDAVDVTANSE---AYDYVTKVL 65


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.131    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,668,367
Number of Sequences: 539616
Number of extensions: 1786764
Number of successful extensions: 8721
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8716
Number of HSP's gapped (non-prelim): 9
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)