Query 031531
Match_columns 158
No_of_seqs 122 out of 1206
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 15:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05768 DUF836: Glutaredoxin- 99.9 3.5E-21 7.5E-26 135.4 9.3 75 49-132 1-81 (81)
2 PRK10329 glutaredoxin-like pro 99.6 1.6E-15 3.4E-20 107.3 9.0 71 48-133 1-75 (81)
3 TIGR02194 GlrX_NrdH Glutaredox 99.6 1E-15 2.2E-20 104.3 7.4 67 50-130 1-71 (72)
4 TIGR02190 GlrX-dom Glutaredoxi 99.6 4.7E-15 1E-19 103.0 8.5 74 41-131 1-78 (79)
5 PRK11200 grxA glutaredoxin 1; 99.5 3.1E-14 6.7E-19 99.6 8.6 75 48-134 1-82 (85)
6 TIGR02189 GlrX-like_plant Glut 99.5 9.4E-15 2E-19 106.7 6.1 76 45-135 5-95 (99)
7 TIGR02183 GRXA Glutaredoxin, G 99.5 1.5E-13 3.2E-18 97.4 9.0 72 50-133 2-80 (86)
8 cd03029 GRX_hybridPRX5 Glutare 99.5 1.3E-13 2.8E-18 93.4 8.0 67 49-132 2-72 (72)
9 cd02973 TRX_GRX_like Thioredox 99.5 1.9E-13 4.1E-18 90.7 8.2 65 49-121 2-67 (67)
10 COG0695 GrxC Glutaredoxin and 99.5 1.5E-13 3.3E-18 97.1 8.2 69 48-130 1-76 (80)
11 TIGR00411 redox_disulf_1 small 99.5 8.4E-13 1.8E-17 89.5 10.1 79 49-134 2-81 (82)
12 TIGR02196 GlrX_YruB Glutaredox 99.5 4.5E-13 9.8E-18 87.7 8.3 69 49-132 1-74 (74)
13 TIGR02181 GRX_bact Glutaredoxi 99.4 3.9E-13 8.6E-18 92.2 7.7 71 50-137 1-76 (79)
14 PRK10638 glutaredoxin 3; Provi 99.4 7E-13 1.5E-17 92.6 8.6 74 47-137 1-79 (83)
15 cd03418 GRX_GRXb_1_3_like Glut 99.4 1.3E-12 2.8E-17 88.1 8.4 66 49-131 1-72 (75)
16 cd03027 GRX_DEP Glutaredoxin ( 99.4 1.4E-12 3E-17 88.7 8.2 65 49-130 2-71 (73)
17 PHA03050 glutaredoxin; Provisi 99.4 1.1E-12 2.4E-17 97.7 7.6 75 47-136 12-104 (108)
18 PF00462 Glutaredoxin: Glutare 99.4 1.5E-12 3.2E-17 85.6 6.6 55 50-117 1-60 (60)
19 cd02976 NrdH NrdH-redoxin (Nrd 99.3 8E-12 1.7E-16 81.8 7.5 68 49-131 1-73 (73)
20 TIGR02200 GlrX_actino Glutared 99.3 1.1E-11 2.5E-16 82.8 8.4 71 49-133 1-77 (77)
21 TIGR00365 monothiol glutaredox 99.3 1.4E-11 3E-16 89.6 8.8 75 46-137 10-94 (97)
22 cd03028 GRX_PICOT_like Glutare 99.3 1.9E-11 4.1E-16 87.2 9.1 74 46-136 6-89 (90)
23 cd02066 GRX_family Glutaredoxi 99.3 1.4E-11 3E-16 80.0 7.5 65 49-130 1-70 (72)
24 TIGR00412 redox_disulf_2 small 99.3 1.7E-11 3.7E-16 85.0 8.0 74 48-132 1-76 (76)
25 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 2.9E-11 6.3E-16 86.8 8.9 75 46-128 12-87 (89)
26 TIGR02180 GRX_euk Glutaredoxin 99.3 1.8E-11 3.9E-16 83.3 6.6 72 50-138 1-82 (84)
27 cd03419 GRX_GRXh_1_2_like Glut 99.2 2.8E-11 6E-16 82.4 7.2 72 49-137 1-80 (82)
28 PRK12759 bifunctional gluaredo 99.2 2.2E-11 4.8E-16 108.3 7.3 75 47-136 1-93 (410)
29 PF13192 Thioredoxin_3: Thiore 99.1 1.5E-10 3.3E-15 80.0 7.1 74 48-132 1-76 (76)
30 PRK10824 glutaredoxin-4; Provi 99.1 1.9E-10 4.1E-15 87.2 7.6 71 46-133 13-93 (115)
31 cd02975 PfPDO_like_N Pyrococcu 99.0 1.7E-09 3.6E-14 79.9 9.5 79 50-133 26-108 (113)
32 PHA02125 thioredoxin-like prot 99.0 2.2E-09 4.8E-14 73.8 8.4 68 50-132 2-74 (75)
33 TIGR02187 GlrX_arch Glutaredox 99.0 4.7E-09 1E-13 85.0 9.5 82 46-134 133-215 (215)
34 cd03031 GRX_GRX_like Glutaredo 98.9 4E-09 8.6E-14 82.9 8.5 68 49-133 1-83 (147)
35 PF00085 Thioredoxin: Thioredo 98.9 1.9E-08 4E-13 69.7 9.9 84 46-134 17-103 (103)
36 cd02949 TRX_NTR TRX domain, no 98.9 1.9E-08 4.2E-13 71.2 10.0 82 46-132 13-97 (97)
37 PTZ00062 glutaredoxin; Provisi 98.9 6.6E-09 1.4E-13 85.5 8.4 76 46-138 111-196 (204)
38 KOG0910 Thioredoxin-like prote 98.9 9.9E-09 2.1E-13 81.5 8.7 83 47-134 62-147 (150)
39 PHA02278 thioredoxin-like prot 98.8 7E-08 1.5E-12 71.0 9.7 80 46-130 14-100 (103)
40 TIGR03143 AhpF_homolog putativ 98.8 3.4E-08 7.3E-13 90.2 9.6 78 47-132 477-555 (555)
41 cd02947 TRX_family TRX family; 98.8 1.3E-07 2.7E-12 62.7 10.0 80 47-132 11-93 (93)
42 cd02963 TRX_DnaJ TRX domain, D 98.8 5.9E-08 1.3E-12 71.0 8.8 86 45-134 23-111 (111)
43 cd03041 GST_N_2GST_N GST_N fam 98.8 5.9E-08 1.3E-12 66.6 8.1 70 50-134 2-76 (77)
44 cd02956 ybbN ybbN protein fami 98.8 1.4E-07 3.1E-12 65.8 10.1 82 46-132 12-96 (96)
45 cd02989 Phd_like_TxnDC9 Phosdu 98.8 9.9E-08 2.2E-12 70.6 9.7 80 47-132 23-113 (113)
46 KOG1752 Glutaredoxin and relat 98.7 3.8E-08 8.3E-13 73.6 7.4 73 45-134 11-91 (104)
47 TIGR01295 PedC_BrcD bacterioci 98.7 1E-07 2.2E-12 71.8 9.5 79 47-132 24-121 (122)
48 cd02948 TRX_NDPK TRX domain, T 98.7 1.5E-07 3.3E-12 67.6 9.5 83 46-134 17-102 (102)
49 cd02994 PDI_a_TMX PDIa family, 98.7 1.8E-07 3.9E-12 65.9 9.8 81 49-133 19-101 (101)
50 cd02954 DIM1 Dim1 family; Dim1 98.7 1.1E-07 2.4E-12 72.0 7.6 77 46-128 14-94 (114)
51 PRK10996 thioredoxin 2; Provis 98.7 3.4E-07 7.3E-12 69.9 10.4 84 46-134 52-138 (139)
52 cd02985 TRX_CDSP32 TRX family, 98.7 4.8E-07 1E-11 65.2 10.6 84 46-135 15-103 (103)
53 PRK09381 trxA thioredoxin; Pro 98.6 4.3E-07 9.3E-12 65.0 10.2 84 46-134 21-107 (109)
54 TIGR01126 pdi_dom protein disu 98.6 2.9E-07 6.3E-12 63.7 8.7 87 45-134 12-101 (102)
55 cd02984 TRX_PICOT TRX domain, 98.6 3.8E-07 8.3E-12 63.4 8.9 81 46-131 14-96 (97)
56 COG3118 Thioredoxin domain-con 98.6 1.7E-07 3.6E-12 81.6 8.2 88 44-136 41-131 (304)
57 TIGR01068 thioredoxin thioredo 98.6 5.3E-07 1.2E-11 62.0 9.2 83 47-134 15-100 (101)
58 cd03040 GST_N_mPGES2 GST_N fam 98.6 2.7E-07 5.8E-12 62.5 7.5 67 49-133 1-74 (77)
59 PTZ00051 thioredoxin; Provisio 98.6 5E-07 1.1E-11 63.1 8.5 78 46-129 18-97 (98)
60 PRK15317 alkyl hydroperoxide r 98.6 3.6E-07 7.9E-12 82.5 9.6 81 46-134 116-197 (517)
61 cd02957 Phd_like Phosducin (Ph 98.6 8.5E-07 1.8E-11 64.7 9.7 79 46-131 24-112 (113)
62 cd02953 DsbDgamma DsbD gamma f 98.5 2.7E-07 6E-12 65.6 6.7 82 47-132 12-104 (104)
63 TIGR02187 GlrX_arch Glutaredox 98.5 8.6E-07 1.9E-11 71.8 10.3 83 46-134 19-110 (215)
64 cd00570 GST_N_family Glutathio 98.5 4.6E-07 1E-11 57.3 6.8 64 51-131 2-70 (71)
65 cd02965 HyaE HyaE family; HyaE 98.5 5.3E-07 1.1E-11 68.2 8.0 97 26-128 7-109 (111)
66 KOG0907 Thioredoxin [Posttrans 98.5 1.3E-06 2.8E-11 65.1 9.7 82 46-134 21-105 (106)
67 TIGR03140 AhpF alkyl hydropero 98.5 7.9E-07 1.7E-11 80.4 9.6 81 46-134 117-198 (515)
68 cd03065 PDI_b_Calsequestrin_N 98.5 1.1E-06 2.3E-11 66.9 8.8 85 47-134 28-118 (120)
69 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 1.5E-06 3.2E-11 61.6 8.8 79 48-131 21-104 (104)
70 cd02961 PDI_a_family Protein D 98.5 7.9E-07 1.7E-11 60.2 7.1 80 48-131 17-101 (101)
71 cd03059 GST_N_SspA GST_N famil 98.5 1.4E-06 3E-11 57.9 8.0 68 50-134 1-72 (73)
72 cd02999 PDI_a_ERp44_like PDIa 98.4 2.1E-06 4.5E-11 62.0 8.7 80 46-131 18-100 (100)
73 cd03036 ArsC_like Arsenate Red 98.4 2.3E-07 5.1E-12 68.7 3.7 36 50-95 1-36 (111)
74 PRK13344 spxA transcriptional 98.4 1.3E-06 2.8E-11 67.1 7.8 35 50-94 2-36 (132)
75 cd03000 PDI_a_TMX3 PDIa family 98.4 2.8E-06 6E-11 60.7 8.9 86 46-134 15-103 (104)
76 cd03003 PDI_a_ERdj5_N PDIa fam 98.4 2.5E-06 5.5E-11 60.3 8.5 79 47-130 19-100 (101)
77 cd03055 GST_N_Omega GST_N fami 98.4 3E-06 6.5E-11 59.7 8.8 70 45-131 14-88 (89)
78 cd02987 Phd_like_Phd Phosducin 98.4 2.9E-06 6.4E-11 67.6 9.5 82 47-135 84-175 (175)
79 cd02997 PDI_a_PDIR PDIa family 98.4 2.3E-06 5E-11 59.7 7.8 81 48-131 19-104 (104)
80 cd02951 SoxW SoxW family; SoxW 98.4 5.1E-06 1.1E-10 61.0 10.0 85 47-135 15-119 (125)
81 cd02977 ArsC_family Arsenate R 98.4 2.9E-07 6.3E-12 66.8 3.2 74 50-135 1-87 (105)
82 cd03005 PDI_a_ERp46 PDIa famil 98.4 1.7E-06 3.8E-11 60.3 6.9 80 49-131 19-102 (102)
83 PF13098 Thioredoxin_2: Thiore 98.4 1E-06 2.2E-11 62.9 5.7 86 45-131 4-112 (112)
84 cd02950 TxlA TRX-like protein 98.4 4.3E-06 9.3E-11 64.2 9.6 85 46-134 20-109 (142)
85 cd03045 GST_N_Delta_Epsilon GS 98.3 3.9E-06 8.4E-11 56.0 8.0 66 50-132 1-73 (74)
86 cd03001 PDI_a_P5 PDIa family, 98.3 6.6E-06 1.4E-10 57.4 9.5 80 47-131 19-102 (103)
87 cd03037 GST_N_GRX2 GST_N famil 98.3 3.6E-06 7.8E-11 56.2 7.5 66 51-133 2-71 (71)
88 PRK01655 spxA transcriptional 98.3 9E-07 1.9E-11 67.7 4.8 35 50-94 2-36 (131)
89 PLN00410 U5 snRNP protein, DIM 98.3 8.6E-06 1.9E-10 63.9 10.4 65 46-115 23-89 (142)
90 cd02998 PDI_a_ERp38 PDIa famil 98.3 4.2E-06 9.1E-11 58.1 7.8 82 47-131 19-105 (105)
91 cd02996 PDI_a_ERp44 PDIa famil 98.3 3.9E-06 8.5E-11 60.1 7.6 84 47-131 19-108 (108)
92 cd03033 ArsC_15kD Arsenate Red 98.3 2.4E-06 5.2E-11 64.2 6.7 35 50-94 2-36 (113)
93 cd03006 PDI_a_EFP1_N PDIa fami 98.3 7.1E-06 1.5E-10 61.4 9.1 81 45-130 28-112 (113)
94 cd03060 GST_N_Omega_like GST_N 98.3 6.3E-06 1.4E-10 55.3 7.8 55 51-117 2-60 (71)
95 cd02962 TMX2 TMX2 family; comp 98.3 6E-06 1.3E-10 65.0 8.5 68 46-117 47-121 (152)
96 TIGR01617 arsC_related transcr 98.2 1.6E-06 3.4E-11 64.5 4.4 36 50-95 1-36 (117)
97 cd03002 PDI_a_MPD1_like PDI fa 98.2 1.1E-05 2.3E-10 57.2 8.3 80 47-131 19-108 (109)
98 PTZ00443 Thioredoxin domain-co 98.2 1.5E-05 3.3E-10 66.4 10.5 85 45-134 51-138 (224)
99 cd03051 GST_N_GTT2_like GST_N 98.2 1.1E-05 2.5E-10 53.0 7.4 66 50-131 1-73 (74)
100 cd02982 PDI_b'_family Protein 98.2 1.2E-05 2.5E-10 56.4 7.7 83 46-133 12-101 (103)
101 cd03056 GST_N_4 GST_N family, 98.2 1.6E-05 3.5E-10 52.4 7.8 65 50-131 1-72 (73)
102 cd02952 TRP14_like Human TRX-r 98.1 1.1E-05 2.4E-10 61.4 7.7 80 47-131 22-118 (119)
103 PF14595 Thioredoxin_9: Thiore 98.1 2.3E-06 5E-11 65.5 4.0 84 45-133 40-127 (129)
104 TIGR00014 arsC arsenate reduct 98.1 8.3E-06 1.8E-10 60.8 6.8 35 50-94 1-35 (114)
105 cd03032 ArsC_Spx Arsenate Redu 98.1 4.2E-06 9.2E-11 62.1 4.8 35 50-94 2-36 (115)
106 TIGR02740 TraF-like TraF-like 98.1 2.6E-05 5.6E-10 66.3 9.9 83 46-134 166-263 (271)
107 PF13417 GST_N_3: Glutathione 98.1 2.1E-05 4.4E-10 53.5 7.2 66 52-134 1-70 (75)
108 PRK12559 transcriptional regul 98.1 4.7E-06 1E-10 64.0 4.2 35 50-94 2-36 (131)
109 COG1393 ArsC Arsenate reductas 98.0 3.2E-05 6.8E-10 58.7 7.9 37 48-94 1-37 (117)
110 cd03035 ArsC_Yffb Arsenate Red 98.0 5.8E-06 1.3E-10 61.1 3.5 35 50-94 1-35 (105)
111 cd02995 PDI_a_PDI_a'_C PDIa fa 98.0 5.6E-05 1.2E-09 52.5 7.9 81 47-131 19-104 (104)
112 cd02986 DLP Dim1 family, Dim1- 98.0 4E-05 8.7E-10 58.4 7.5 67 45-117 13-81 (114)
113 TIGR01616 nitro_assoc nitrogen 97.9 5.2E-05 1.1E-09 58.1 7.1 35 49-93 2-36 (126)
114 cd03030 GRX_SH3BGR Glutaredoxi 97.9 5.3E-05 1.2E-09 55.2 6.8 61 60-137 18-87 (92)
115 cd02993 PDI_a_APS_reductase PD 97.9 7.8E-05 1.7E-09 53.9 7.6 81 47-131 22-109 (109)
116 PRK00293 dipZ thiol:disulfide 97.9 6.7E-05 1.5E-09 69.7 9.0 84 47-135 475-570 (571)
117 TIGR02738 TrbB type-F conjugat 97.9 0.00013 2.8E-09 57.3 9.1 82 46-133 50-151 (153)
118 PTZ00102 disulphide isomerase; 97.9 0.00012 2.6E-09 64.3 9.9 91 47-140 50-143 (477)
119 cd02988 Phd_like_VIAF Phosduci 97.9 9.6E-05 2.1E-09 60.0 8.6 80 47-135 103-192 (192)
120 PF13728 TraF: F plasmid trans 97.8 9.3E-05 2E-09 61.0 8.5 80 46-131 120-214 (215)
121 COG4545 Glutaredoxin-related p 97.8 5E-05 1.1E-09 54.9 5.9 57 51-120 5-78 (85)
122 cd03058 GST_N_Tau GST_N family 97.8 0.00018 3.9E-09 48.2 8.1 68 50-134 1-73 (74)
123 PRK13728 conjugal transfer pro 97.8 0.00017 3.6E-09 58.8 9.2 78 50-133 73-169 (181)
124 cd01659 TRX_superfamily Thiore 97.8 8.4E-05 1.8E-09 44.3 5.5 55 50-109 1-59 (69)
125 cd03053 GST_N_Phi GST_N family 97.8 0.00029 6.3E-09 47.1 8.5 67 50-133 2-75 (76)
126 PTZ00102 disulphide isomerase; 97.7 0.00017 3.8E-09 63.3 9.0 87 47-136 376-466 (477)
127 TIGR01130 ER_PDI_fam protein d 97.7 0.00017 3.7E-09 62.3 8.8 91 47-139 19-113 (462)
128 cd02959 ERp19 Endoplasmic reti 97.7 9.2E-05 2E-09 55.2 5.9 68 46-117 19-90 (117)
129 cd03049 GST_N_3 GST_N family, 97.6 0.00037 8.1E-09 46.5 7.2 68 50-131 1-72 (73)
130 cd02955 SSP411 TRX domain, SSP 97.6 0.00041 8.9E-09 52.8 8.2 70 47-118 16-95 (124)
131 cd03052 GST_N_GDAP1 GST_N fami 97.5 0.00065 1.4E-08 46.4 7.6 65 50-131 1-72 (73)
132 PRK10026 arsenate reductase; P 97.5 0.00013 2.7E-09 57.3 4.2 38 47-94 1-38 (141)
133 PRK10877 protein disulfide iso 97.5 0.0006 1.3E-08 56.7 8.0 82 44-135 105-231 (232)
134 cd03054 GST_N_Metaxin GST_N fa 97.4 0.00068 1.5E-08 45.3 6.7 57 57-133 15-71 (72)
135 PTZ00062 glutaredoxin; Provisi 97.4 0.001 2.2E-08 54.9 9.0 75 47-135 18-94 (204)
136 PRK09481 sspA stringent starva 97.4 0.0013 2.9E-08 52.3 9.2 69 49-134 10-82 (211)
137 TIGR00424 APS_reduc 5'-adenyly 97.4 0.00077 1.7E-08 61.8 8.8 85 46-134 371-462 (463)
138 PRK15412 thiol:disulfide inter 97.4 0.0019 4.2E-08 51.1 10.0 81 46-133 68-174 (185)
139 cd03061 GST_N_CLIC GST_N famil 97.4 0.00098 2.1E-08 48.6 7.3 63 56-135 20-86 (91)
140 PLN02309 5'-adenylylsulfate re 97.3 0.0013 2.8E-08 60.3 9.4 86 45-134 364-456 (457)
141 PRK10387 glutaredoxin 2; Provi 97.3 0.0012 2.6E-08 51.7 7.9 69 50-134 1-72 (210)
142 cd03034 ArsC_ArsC Arsenate Red 97.3 0.00022 4.7E-09 52.9 3.5 35 50-94 1-35 (112)
143 cd03010 TlpA_like_DsbE TlpA-li 97.3 0.0013 2.8E-08 48.0 7.4 41 45-91 24-64 (127)
144 PRK15113 glutathione S-transfe 97.3 0.0018 3.9E-08 51.7 8.8 72 46-134 2-82 (214)
145 cd03042 GST_N_Zeta GST_N famil 97.3 0.0018 4E-08 42.5 7.4 64 51-131 2-72 (73)
146 COG0278 Glutaredoxin-related p 97.3 0.00077 1.7E-08 50.9 6.1 75 46-133 13-103 (105)
147 PRK03147 thiol-disulfide oxido 97.3 0.0021 4.5E-08 48.9 8.3 87 45-134 60-171 (173)
148 TIGR00385 dsbE periplasmic pro 97.3 0.0028 6.1E-08 49.5 9.2 82 46-134 63-170 (173)
149 TIGR01130 ER_PDI_fam protein d 97.2 0.0019 4.2E-08 55.8 8.7 87 46-138 364-457 (462)
150 PRK10853 putative reductase; P 97.2 0.00035 7.6E-09 52.8 3.6 35 50-94 2-36 (118)
151 TIGR02739 TraF type-F conjugat 97.2 0.0021 4.5E-08 54.9 8.6 80 48-133 152-246 (256)
152 cd03039 GST_N_Sigma_like GST_N 97.2 0.002 4.3E-08 42.9 6.8 66 50-132 1-71 (72)
153 cd03044 GST_N_EF1Bgamma GST_N 97.2 0.0043 9.4E-08 41.8 8.5 66 51-133 2-74 (75)
154 cd03050 GST_N_Theta GST_N fami 97.2 0.0039 8.4E-08 41.9 8.0 67 50-133 1-74 (76)
155 PRK14018 trifunctional thiored 97.1 0.0032 7E-08 58.6 9.8 89 45-136 55-174 (521)
156 cd02992 PDI_a_QSOX PDIa family 97.1 0.0016 3.5E-08 47.9 6.3 61 47-109 20-84 (114)
157 PRK11509 hydrogenase-1 operon 97.1 0.0024 5.3E-08 49.7 7.6 101 29-133 17-122 (132)
158 cd02966 TlpA_like_family TlpA- 97.1 0.0024 5.1E-08 43.5 6.7 45 46-93 19-63 (116)
159 PF06764 DUF1223: Protein of u 97.1 0.002 4.3E-08 53.2 7.3 75 50-134 2-97 (202)
160 PRK13703 conjugal pilus assemb 97.1 0.0031 6.6E-08 53.7 8.5 81 47-133 144-239 (248)
161 cd03007 PDI_a_ERp29_N PDIa fam 97.1 0.0035 7.7E-08 47.6 7.9 77 49-134 21-115 (116)
162 cd03011 TlpA_like_ScsD_MtbDsbE 97.1 0.006 1.3E-07 43.9 8.7 77 46-130 20-121 (123)
163 cd03080 GST_N_Metaxin_like GST 97.1 0.0039 8.4E-08 42.2 7.3 63 50-133 2-72 (75)
164 cd03048 GST_N_Ure2p_like GST_N 97.0 0.0083 1.8E-07 40.7 8.4 67 50-134 2-78 (81)
165 cd03057 GST_N_Beta GST_N famil 97.0 0.0058 1.2E-07 41.0 7.5 65 51-133 2-74 (77)
166 TIGR02182 GRXB Glutaredoxin, G 97.0 0.0038 8.2E-08 50.0 7.6 68 51-134 1-71 (209)
167 cd03076 GST_N_Pi GST_N family, 96.9 0.007 1.5E-07 40.8 7.2 67 50-133 2-72 (73)
168 COG3019 Predicted metal-bindin 96.9 0.0099 2.2E-07 47.3 9.0 76 46-135 24-104 (149)
169 cd03038 GST_N_etherase_LigE GS 96.8 0.0045 9.8E-08 42.5 5.9 62 56-134 14-82 (84)
170 KOG0908 Thioredoxin-like prote 96.8 0.0065 1.4E-07 52.6 7.8 83 48-136 23-107 (288)
171 cd02958 UAS UAS family; UAS is 96.7 0.018 3.9E-07 41.8 9.0 86 47-134 18-110 (114)
172 TIGR02661 MauD methylamine deh 96.7 0.02 4.2E-07 45.6 9.8 84 45-134 73-178 (189)
173 PF04908 SH3BGR: SH3-binding, 96.7 0.0066 1.4E-07 45.1 6.2 68 49-133 2-89 (99)
174 TIGR03143 AhpF_homolog putativ 96.6 0.015 3.3E-07 53.4 9.7 79 48-131 368-450 (555)
175 COG0526 TrxA Thiol-disulfide i 96.6 0.0052 1.1E-07 40.5 5.0 60 50-115 36-100 (127)
176 cd03020 DsbA_DsbC_DsbG DsbA fa 96.6 0.0059 1.3E-07 48.5 6.1 25 46-70 77-101 (197)
177 PF13899 Thioredoxin_7: Thiore 96.6 0.0051 1.1E-07 42.3 5.1 63 46-109 17-79 (82)
178 cd03009 TryX_like_TryX_NRX Try 96.6 0.0081 1.8E-07 44.1 6.2 70 45-116 17-112 (131)
179 cd03046 GST_N_GTT1_like GST_N 96.6 0.021 4.5E-07 37.8 7.6 65 51-133 2-73 (76)
180 cd03047 GST_N_2 GST_N family, 96.5 0.023 5.1E-07 37.8 7.6 64 51-131 2-72 (73)
181 cd02967 mauD Methylamine utili 96.5 0.0077 1.7E-07 42.7 5.3 58 46-108 21-83 (114)
182 PLN02473 glutathione S-transfe 96.4 0.024 5.2E-07 44.7 8.6 69 49-134 2-77 (214)
183 cd03077 GST_N_Alpha GST_N fami 96.4 0.027 5.8E-07 38.7 7.8 67 50-133 2-74 (79)
184 cd03008 TryX_like_RdCVF Trypar 96.4 0.02 4.3E-07 44.9 7.9 49 47-95 26-78 (146)
185 PF03960 ArsC: ArsC family; I 96.4 0.0035 7.5E-08 45.9 3.4 71 53-135 1-84 (110)
186 cd02964 TryX_like_family Trypa 96.3 0.019 4.2E-07 42.5 7.1 70 46-117 17-113 (132)
187 KOG0190 Protein disulfide isom 96.2 0.0085 1.8E-07 55.6 5.6 98 50-151 46-148 (493)
188 KOG3029 Glutathione S-transfer 96.2 0.012 2.6E-07 52.0 6.2 73 48-135 89-165 (370)
189 PLN02395 glutathione S-transfe 96.0 0.051 1.1E-06 42.8 8.5 68 49-134 2-76 (215)
190 COG4837 Uncharacterized protei 95.9 0.072 1.6E-06 40.1 8.3 85 46-135 3-103 (106)
191 PF06110 DUF953: Eukaryotic pr 95.9 0.01 2.2E-07 45.4 3.7 51 55-109 35-95 (119)
192 COG2143 Thioredoxin-related pr 95.9 0.041 8.8E-07 45.0 7.3 90 41-131 37-145 (182)
193 KOG0911 Glutaredoxin-related p 95.8 0.027 5.8E-07 47.7 6.1 70 48-134 139-218 (227)
194 PLN02919 haloacid dehalogenase 95.7 0.066 1.4E-06 53.4 9.7 87 45-134 419-535 (1057)
195 cd02969 PRX_like1 Peroxiredoxi 95.6 0.11 2.4E-06 40.0 8.6 45 45-92 24-68 (171)
196 PF13409 GST_N_2: Glutathione 95.5 0.054 1.2E-06 36.3 5.9 61 57-133 1-69 (70)
197 TIGR01626 ytfJ_HI0045 conserve 95.5 0.029 6.4E-07 45.7 5.3 55 32-93 45-105 (184)
198 PF07315 DUF1462: Protein of u 95.4 0.17 3.7E-06 37.6 8.5 76 51-131 1-92 (93)
199 TIGR01262 maiA maleylacetoacet 95.3 0.063 1.4E-06 42.0 6.5 67 51-134 1-75 (210)
200 PTZ00056 glutathione peroxidas 95.3 0.12 2.7E-06 41.7 8.3 60 45-107 38-108 (199)
201 PF13905 Thioredoxin_8: Thiore 95.2 0.031 6.7E-07 38.5 4.0 50 47-98 2-51 (95)
202 PLN02378 glutathione S-transfe 95.2 0.089 1.9E-06 42.1 7.2 62 56-134 18-83 (213)
203 COG5494 Predicted thioredoxin/ 95.2 0.11 2.3E-06 44.5 7.6 79 47-138 10-94 (265)
204 smart00594 UAS UAS domain. 95.1 0.21 4.5E-06 37.0 8.5 84 47-132 28-122 (122)
205 PF02798 GST_N: Glutathione S- 95.0 0.28 6E-06 33.3 8.3 66 48-132 1-75 (76)
206 TIGR00862 O-ClC intracellular 95.0 0.11 2.4E-06 43.5 7.4 63 55-134 16-82 (236)
207 PRK10357 putative glutathione 95.0 0.13 2.7E-06 40.2 7.3 69 51-135 2-74 (202)
208 PF08534 Redoxin: Redoxin; In 94.8 0.051 1.1E-06 40.3 4.5 63 43-108 25-91 (146)
209 cd03012 TlpA_like_DipZ_like Tl 94.8 0.29 6.2E-06 35.8 8.4 61 45-108 22-91 (126)
210 COG0625 Gst Glutathione S-tran 94.8 0.16 3.5E-06 40.1 7.5 69 51-135 2-76 (211)
211 cd02960 AGR Anterior Gradient 94.8 0.08 1.7E-06 41.0 5.6 70 46-116 23-92 (130)
212 PLN02399 phospholipid hydroper 94.6 0.28 6E-06 41.3 8.9 42 47-91 100-141 (236)
213 KOG0406 Glutathione S-transfer 94.6 0.18 4E-06 42.7 7.8 60 48-120 8-72 (231)
214 KOG0191 Thioredoxin/protein di 94.4 0.23 5E-06 43.5 8.1 88 47-140 48-139 (383)
215 PF06953 ArsD: Arsenical resis 94.3 0.19 4E-06 38.8 6.5 77 47-133 1-100 (123)
216 cd03043 GST_N_1 GST_N family, 94.2 0.3 6.5E-06 32.8 6.8 60 55-131 7-72 (73)
217 PLN02817 glutathione dehydroge 94.1 0.18 3.9E-06 42.7 6.7 62 56-134 71-136 (265)
218 cd03023 DsbA_Com1_like DsbA fa 93.8 0.14 3.1E-06 37.3 5.0 42 44-90 3-44 (154)
219 PRK11657 dsbG disulfide isomer 93.8 0.12 2.6E-06 43.4 5.1 39 45-89 116-154 (251)
220 cd02970 PRX_like2 Peroxiredoxi 93.8 0.13 2.8E-06 37.7 4.7 58 48-108 25-86 (149)
221 PRK13972 GSH-dependent disulfi 93.8 0.53 1.2E-05 37.3 8.6 48 50-108 2-56 (215)
222 TIGR02540 gpx7 putative glutat 93.7 0.75 1.6E-05 34.8 8.8 41 47-90 23-63 (153)
223 PF03190 Thioredox_DsbH: Prote 93.6 0.51 1.1E-05 38.0 8.0 69 47-123 38-122 (163)
224 COG4232 Thiol:disulfide interc 93.6 0.2 4.4E-06 47.4 6.5 86 48-135 476-568 (569)
225 KOG0913 Thiol-disulfide isomer 93.5 0.056 1.2E-06 46.3 2.6 81 50-134 43-125 (248)
226 PHA03075 glutaredoxin-like pro 93.5 0.12 2.7E-06 40.0 4.2 36 48-91 3-38 (123)
227 KOG1422 Intracellular Cl- chan 93.4 0.32 6.9E-06 41.1 6.9 63 57-134 20-84 (221)
228 PRK09301 circadian clock prote 93.1 0.37 8.1E-06 36.3 6.2 88 45-137 4-92 (103)
229 cd03018 PRX_AhpE_like Peroxire 93.0 0.15 3.4E-06 37.6 4.0 55 51-108 34-91 (149)
230 COG5429 Uncharacterized secret 92.7 0.31 6.6E-06 42.0 5.8 79 47-135 42-141 (261)
231 PF00578 AhpC-TSA: AhpC/TSA fa 92.5 0.2 4.4E-06 35.5 4.0 61 45-108 24-88 (124)
232 KOG1695 Glutathione S-transfer 92.4 0.45 9.7E-06 39.5 6.4 69 47-132 1-73 (206)
233 cd03017 PRX_BCP Peroxiredoxin 92.0 0.25 5.5E-06 36.0 4.0 60 46-108 23-86 (140)
234 KOG0190 Protein disulfide isom 92.0 0.36 7.9E-06 45.0 5.8 85 49-136 387-474 (493)
235 cd00340 GSH_Peroxidase Glutath 91.6 0.71 1.5E-05 35.0 6.3 59 46-108 22-92 (152)
236 PF02114 Phosducin: Phosducin; 91.6 0.87 1.9E-05 39.0 7.4 82 48-136 148-239 (265)
237 KOG3425 Uncharacterized conser 91.3 0.21 4.5E-06 39.0 3.0 51 55-109 42-101 (128)
238 KOG2501 Thioredoxin, nucleored 91.1 0.42 9E-06 38.5 4.6 69 48-117 35-129 (157)
239 cd02978 KaiB_like KaiB-like fa 91.0 0.62 1.4E-05 32.9 5.0 58 49-109 3-61 (72)
240 PTZ00256 glutathione peroxidas 90.9 0.56 1.2E-05 37.0 5.2 55 51-108 46-112 (183)
241 cd03079 GST_N_Metaxin2 GST_N f 90.7 0.84 1.8E-05 32.0 5.4 59 56-133 15-73 (74)
242 cd02972 DsbA_family DsbA famil 90.5 0.43 9.3E-06 31.6 3.7 38 50-91 1-38 (98)
243 PLN02412 probable glutathione 90.4 0.5 1.1E-05 36.8 4.5 59 47-108 30-100 (167)
244 cd02974 AhpF_NTD_N Alkyl hydro 90.1 3.7 7.9E-05 29.9 8.6 72 45-133 18-92 (94)
245 COG2999 GrxB Glutaredoxin 2 [P 89.8 0.4 8.6E-06 40.1 3.6 53 51-115 2-57 (215)
246 PTZ00057 glutathione s-transfe 89.8 2.6 5.6E-05 33.3 8.2 69 49-134 4-82 (205)
247 PF13462 Thioredoxin_4: Thiore 89.6 0.57 1.2E-05 34.8 4.0 46 44-91 10-55 (162)
248 PF13848 Thioredoxin_6: Thiore 89.3 6.9 0.00015 29.4 9.9 80 49-132 98-183 (184)
249 TIGR02654 circ_KaiB circadian 88.6 1.6 3.4E-05 32.0 5.6 59 49-110 5-64 (87)
250 cd03019 DsbA_DsbA DsbA family, 88.3 1.3 2.8E-05 33.5 5.2 43 45-91 14-56 (178)
251 cd03014 PRX_Atyp2cys Peroxired 88.1 1.8 3.8E-05 31.9 5.8 57 47-108 27-88 (143)
252 KOG0867 Glutathione S-transfer 87.9 3.5 7.6E-05 33.8 8.0 69 48-133 1-76 (226)
253 cd03075 GST_N_Mu GST_N family, 87.8 4.4 9.6E-05 27.9 7.3 58 59-133 10-80 (82)
254 cd02971 PRX_family Peroxiredox 87.8 1.2 2.5E-05 32.4 4.6 61 45-108 21-86 (140)
255 PRK10542 glutathionine S-trans 87.6 2.4 5.1E-05 32.8 6.5 67 51-134 2-76 (201)
256 PRK11752 putative S-transferas 87.2 4.9 0.00011 33.5 8.6 75 49-134 44-128 (264)
257 cd02968 SCO SCO (an acronym fo 85.7 2.7 5.7E-05 30.6 5.6 60 46-108 22-92 (142)
258 KOG0191 Thioredoxin/protein di 84.9 3 6.5E-05 36.5 6.4 91 45-138 161-255 (383)
259 PRK10606 btuE putative glutath 84.6 2.3 5E-05 34.3 5.2 66 46-115 25-102 (183)
260 PRK09437 bcp thioredoxin-depen 83.6 1.7 3.6E-05 32.6 3.7 59 47-108 31-93 (154)
261 PRK15317 alkyl hydroperoxide r 81.8 9.6 0.00021 34.7 8.6 70 45-131 18-90 (517)
262 TIGR03140 AhpF alkyl hydropero 81.7 9.8 0.00021 34.7 8.6 70 46-131 19-91 (515)
263 TIGR03137 AhpC peroxiredoxin. 81.7 12 0.00025 29.6 8.1 24 48-71 33-57 (187)
264 PF04134 DUF393: Protein of un 81.6 9 0.00019 27.4 6.8 70 53-136 2-79 (114)
265 PF01323 DSBA: DSBA-like thior 81.2 1.5 3.3E-05 33.5 2.8 32 98-132 161-193 (193)
266 KOG4277 Uncharacterized conser 80.5 4.9 0.00011 36.4 6.0 84 46-133 43-130 (468)
267 PF09822 ABC_transp_aux: ABC-t 80.4 29 0.00062 28.7 10.4 90 43-137 22-144 (271)
268 COG3011 Predicted thiol-disulf 80.2 23 0.0005 27.9 9.1 80 46-137 6-89 (137)
269 cd03078 GST_N_Metaxin1_like GS 80.1 5.1 0.00011 27.3 4.9 59 57-135 15-73 (73)
270 PRK13190 putative peroxiredoxi 78.8 15 0.00033 29.5 8.0 82 52-136 34-155 (202)
271 cd03016 PRX_1cys Peroxiredoxin 78.7 13 0.00029 29.8 7.6 40 50-92 30-69 (203)
272 KOG2824 Glutaredoxin-related p 77.9 4.1 8.8E-05 35.7 4.6 78 45-135 128-225 (281)
273 COG3634 AhpF Alkyl hydroperoxi 76.7 6.1 0.00013 36.6 5.6 79 47-133 117-196 (520)
274 PF07689 KaiB: KaiB domain; I 76.6 1.3 2.8E-05 31.9 1.1 54 52-108 2-56 (82)
275 TIGR03759 conj_TIGR03759 integ 76.6 8.7 0.00019 32.2 6.1 57 44-108 106-164 (200)
276 PF13462 Thioredoxin_4: Thiore 75.6 2.4 5.3E-05 31.3 2.4 34 96-133 128-162 (162)
277 PRK10382 alkyl hydroperoxide r 75.2 29 0.00063 27.9 8.7 81 53-136 39-157 (187)
278 PRK05988 formate dehydrogenase 74.5 5.4 0.00012 31.6 4.2 81 41-135 69-155 (156)
279 cd03015 PRX_Typ2cys Peroxiredo 74.2 5 0.00011 31.0 3.9 42 48-92 31-73 (173)
280 cd02983 P5_C P5 family, C-term 74.0 15 0.00032 27.9 6.3 73 63-138 41-118 (130)
281 COG1905 NuoE NADH:ubiquinone o 73.9 4.3 9.4E-05 32.7 3.5 83 41-137 71-159 (160)
282 PRK00522 tpx lipid hydroperoxi 73.9 11 0.00024 29.2 5.8 58 46-108 44-106 (167)
283 PRK13599 putative peroxiredoxi 72.4 22 0.00048 29.1 7.5 83 51-136 34-157 (215)
284 KOG0912 Thiol-disulfide isomer 72.2 6.9 0.00015 35.3 4.7 91 47-138 14-109 (375)
285 cd03023 DsbA_Com1_like DsbA fa 71.8 3.9 8.6E-05 29.6 2.7 34 95-132 120-154 (154)
286 PF11287 DUF3088: Protein of u 71.6 12 0.00027 28.6 5.3 68 57-133 23-105 (112)
287 PF13848 Thioredoxin_6: Thiore 70.8 18 0.0004 27.1 6.3 62 82-146 22-86 (184)
288 PRK07571 bidirectional hydroge 69.5 5.8 0.00013 32.0 3.4 80 41-134 82-167 (169)
289 PF01216 Calsequestrin: Calseq 65.2 22 0.00047 32.5 6.4 89 47-139 52-148 (383)
290 cd03025 DsbA_FrnE_like DsbA fa 65.2 6 0.00013 30.3 2.6 25 48-72 1-25 (193)
291 PTZ00137 2-Cys peroxiredoxin; 65.1 51 0.0011 28.2 8.4 82 52-136 105-226 (261)
292 PF01323 DSBA: DSBA-like thior 62.6 7.2 0.00016 29.7 2.6 24 49-72 1-24 (193)
293 KOG2603 Oligosaccharyltransfer 61.4 32 0.00069 30.9 6.7 93 41-134 55-165 (331)
294 PRK10954 periplasmic protein d 60.2 17 0.00037 29.1 4.5 86 46-139 37-138 (207)
295 KOG0868 Glutathione S-transfer 58.8 14 0.00031 31.1 3.8 71 47-134 5-81 (217)
296 cd03024 DsbA_FrnE DsbA family, 58.4 11 0.00024 29.1 3.1 32 98-132 169-201 (201)
297 PF00837 T4_deiodinase: Iodoth 55.5 64 0.0014 27.6 7.3 59 61-134 170-236 (237)
298 COG2761 FrnE Predicted dithiol 55.1 11 0.00024 31.9 2.7 29 44-72 2-30 (225)
299 KOG4244 Failed axon connection 54.7 20 0.00043 31.5 4.2 66 48-129 44-116 (281)
300 TIGR02742 TrbC_Ftype type-F co 51.2 44 0.00096 25.8 5.3 48 88-135 55-115 (130)
301 TIGR01958 nuoE_fam NADH-quinon 49.9 29 0.00064 26.8 4.1 78 41-134 62-147 (148)
302 cd03022 DsbA_HCCA_Iso DsbA fam 49.1 11 0.00023 28.9 1.5 23 50-72 1-23 (192)
303 KOG4420 Uncharacterized conser 47.1 27 0.00058 31.0 3.8 68 49-133 26-100 (325)
304 PF11009 DUF2847: Protein of u 45.7 1.2E+02 0.0026 22.8 6.7 76 47-127 19-104 (105)
305 COG1651 DsbG Protein-disulfide 45.4 62 0.0014 26.0 5.6 47 43-92 81-127 (244)
306 PF14424 Toxin-deaminase: The 45.0 48 0.001 25.6 4.6 24 48-71 97-121 (133)
307 cd03021 DsbA_GSTK DsbA family, 45.0 29 0.00064 27.6 3.6 40 48-91 1-40 (209)
308 PRK12373 NADH dehydrogenase su 44.8 26 0.00055 32.2 3.5 85 42-138 84-173 (400)
309 cd03073 PDI_b'_ERp72_ERp57 PDI 44.2 68 0.0015 23.6 5.2 52 82-133 51-109 (111)
310 PF07912 ERp29_N: ERp29, N-ter 43.6 1.3E+02 0.0029 23.5 6.8 55 80-134 52-118 (126)
311 cd03081 TRX_Fd_NuoE_FDH_gamma 42.6 37 0.00081 23.4 3.4 27 102-133 53-79 (80)
312 PRK11657 dsbG disulfide isomer 42.3 33 0.00071 28.8 3.6 42 92-133 207-250 (251)
313 cd03024 DsbA_FrnE DsbA family, 41.9 30 0.00065 26.6 3.1 23 50-72 1-23 (201)
314 COG1628 Endonuclease V homolog 41.4 51 0.0011 27.3 4.5 60 81-145 40-106 (185)
315 PF10905 DUF2695: Protein of u 41.1 31 0.00068 23.0 2.6 22 121-142 29-52 (53)
316 PRK07539 NADH dehydrogenase su 40.3 44 0.00095 26.0 3.8 78 41-134 68-153 (154)
317 cd03082 TRX_Fd_NuoE_W_FDH_beta 38.9 43 0.00093 22.9 3.2 27 102-133 45-71 (72)
318 PRK13191 putative peroxiredoxi 38.5 44 0.00096 27.3 3.7 39 51-92 39-77 (215)
319 cd03072 PDI_b'_ERp44 PDIb' fam 38.3 1.2E+02 0.0026 22.1 5.7 80 49-134 20-107 (111)
320 TIGR03439 methyl_EasF probable 38.2 1E+02 0.0022 27.1 6.1 35 55-94 82-116 (319)
321 PF06053 DUF929: Domain of unk 35.5 61 0.0013 27.9 4.2 26 46-71 58-83 (249)
322 PF10926 DUF2800: Protein of u 35.5 51 0.0011 29.8 3.9 40 101-143 286-325 (372)
323 KOG4023 Uncharacterized conser 34.4 21 0.00045 27.2 1.0 14 82-95 32-45 (108)
324 cd03022 DsbA_HCCA_Iso DsbA fam 33.2 40 0.00086 25.6 2.5 29 99-131 162-191 (192)
325 COG2761 FrnE Predicted dithiol 33.1 43 0.00094 28.4 2.9 33 99-134 179-212 (225)
326 cd02980 TRX_Fd_family Thioredo 32.1 56 0.0012 21.5 2.8 30 102-134 48-77 (77)
327 COG0602 NrdG Organic radical a 31.9 26 0.00057 28.8 1.4 68 57-139 35-103 (212)
328 PRK00766 hypothetical protein; 31.0 79 0.0017 26.1 4.0 57 82-143 42-106 (194)
329 cd03032 ArsC_Spx Arsenate Redu 30.9 50 0.0011 24.1 2.6 24 103-131 91-114 (115)
330 cd03013 PRX5_like Peroxiredoxi 30.9 1E+02 0.0022 23.6 4.4 57 49-108 33-96 (155)
331 PRK10853 putative reductase; P 30.6 66 0.0014 24.0 3.3 27 103-133 91-117 (118)
332 PRK13730 conjugal transfer pil 30.2 1.2E+02 0.0026 25.7 5.0 46 90-135 148-194 (212)
333 PRK01655 spxA transcriptional 30.1 60 0.0013 24.5 3.0 27 103-134 91-117 (131)
334 PF01516 Orbi_VP6: Orbivirus h 30.1 42 0.0009 30.1 2.4 43 95-145 136-178 (322)
335 TIGR01626 ytfJ_HI0045 conserve 29.5 2.9E+02 0.0063 22.4 7.1 51 82-132 123-177 (184)
336 PF13743 Thioredoxin_5: Thiore 29.4 56 0.0012 25.7 2.8 36 52-91 2-37 (176)
337 cd03064 TRX_Fd_NuoE TRX-like [ 29.4 85 0.0018 21.2 3.4 27 102-133 53-79 (80)
338 PRK12559 transcriptional regul 28.7 65 0.0014 24.5 3.0 26 103-133 91-116 (131)
339 cd03012 TlpA_like_DipZ_like Tl 27.9 2.2E+02 0.0048 20.3 5.6 35 82-117 84-119 (126)
340 TIGR01617 arsC_related transcr 26.8 70 0.0015 23.3 2.8 25 103-131 92-116 (117)
341 PTZ00253 tryparedoxin peroxida 24.6 92 0.002 24.7 3.3 37 53-92 44-80 (199)
342 cd03083 TRX_Fd_NuoE_hoxF TRX-l 24.4 1.1E+02 0.0025 20.9 3.4 27 102-133 53-79 (80)
343 PRK03708 ppnK inorganic polyph 23.9 3.6E+02 0.0078 23.0 7.0 80 48-135 1-110 (277)
344 COG1651 DsbG Protein-disulfide 23.0 89 0.0019 25.1 3.0 27 46-72 118-144 (244)
345 PLN00118 isocitrate dehydrogen 23.0 2.4E+02 0.0051 25.7 5.9 37 47-91 41-79 (372)
346 PF01949 DUF99: Protein of unk 22.9 48 0.001 27.2 1.4 60 82-146 36-102 (187)
347 PLN02590 probable tyrosine dec 22.7 3.9E+02 0.0086 25.2 7.5 74 48-136 228-318 (539)
348 COG0042 tRNA-dihydrouridine sy 22.5 4.4E+02 0.0096 23.0 7.4 79 45-142 138-228 (323)
349 PF09673 TrbC_Ftype: Type-F co 22.3 1.6E+02 0.0035 21.7 4.0 23 88-110 55-78 (113)
350 PRK13189 peroxiredoxin; Provis 22.1 1.1E+02 0.0023 25.2 3.3 21 51-71 41-61 (222)
351 KOG3414 Component of the U4/U6 21.4 3.3E+02 0.0071 21.7 5.7 59 43-106 20-79 (142)
352 PHA00729 NTP-binding motif con 21.2 5E+02 0.011 21.8 7.2 24 48-71 18-41 (226)
353 cd02991 UAS_ETEA UAS family, E 20.9 3.5E+02 0.0076 19.9 8.5 53 82-134 52-112 (116)
354 PRK15000 peroxidase; Provision 20.8 1.1E+02 0.0025 24.5 3.2 40 50-92 39-78 (200)
355 KOG0914 Thioredoxin-like prote 20.7 91 0.002 27.1 2.6 65 48-116 146-217 (265)
356 PF10281 Ish1: Putative stress 20.5 98 0.0021 18.5 2.1 17 122-138 4-20 (38)
357 PF02571 CbiJ: Precorrin-6x re 20.3 1.4E+02 0.003 25.2 3.7 25 116-140 46-71 (249)
358 TIGR03521 GldG gliding-associa 20.2 2.8E+02 0.006 26.0 5.9 68 23-95 19-97 (552)
No 1
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=99.85 E-value=3.5e-21 Score=135.36 Aligned_cols=75 Identities=41% Similarity=0.714 Sum_probs=66.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceEEEeccCC------eEEEecCC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDG------TEVLMACI 122 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i~~idG------e~i~~grf 122 (158)
+|++|||||||+|+.|++.|++. ..+.+++++.|||++|++|.++|+++|||+. .+| .....|+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~------~~~~~~~l~~vDI~~d~~l~~~Y~~~IPVl~---~~~~~~~~~~~~~~~~~ 71 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEV------AAEFPFELEEVDIDEDPELFEKYGYRIPVLH---IDGIRQFKEQEELKWRF 71 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHC------CTTSTCEEEEEETTTTHHHHHHSCTSTSEEE---ETT-GGGCTSEEEESSB
T ss_pred CEEEEcCCCCChHHHHHHHHHHH------HhhcCceEEEEECCCCHHHHHHhcCCCCEEE---EcCcccccccceeCCCC
Confidence 58999999999999999999987 3456899999999999999999999999999 677 77888889
Q ss_pred CHHHHHHHHH
Q 031531 123 NRFRIEAWLS 132 (158)
Q Consensus 123 d~d~L~~~L~ 132 (158)
++++|+++|+
T Consensus 72 d~~~L~~~L~ 81 (81)
T PF05768_consen 72 DEEQLRAWLE 81 (81)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHhC
Confidence 9999999985
No 2
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.63 E-value=1.6e-15 Score=107.31 Aligned_cols=71 Identities=14% Similarity=0.351 Sum_probs=59.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh---cC-CccceEEEeccCCeEEEecCCC
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS---YQ-YEIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek---yg-~~VPVL~i~~idGe~i~~grfd 123 (158)
++|++||+++||+|+++|++|++. |++|+++||++|++..++ .| ..||+++ ++|+. +.+|+
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~----------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~---i~~~~--~~Gf~ 65 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESR----------GFDFEMINVDRVPEAAETLRAQGFRQLPVVI---AGDLS--WSGFR 65 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHcCCCCcCEEE---ECCEE--EecCC
Confidence 479999999999999999999987 999999999999875443 34 4799999 66753 44599
Q ss_pred HHHHHHHHHh
Q 031531 124 RFRIEAWLSQ 133 (158)
Q Consensus 124 ~d~L~~~L~~ 133 (158)
+++|.++...
T Consensus 66 ~~~l~~~~~~ 75 (81)
T PRK10329 66 PDMINRLHPA 75 (81)
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 3
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.63 E-value=1e-15 Score=104.33 Aligned_cols=67 Identities=22% Similarity=0.442 Sum_probs=57.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhc---CC-ccceEEEeccCCeEEEecCCCHH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY---QY-EIPVLARVLSDGTEVLMACINRF 125 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~eky---g~-~VPVL~i~~idGe~i~~grfd~d 125 (158)
|++|++++||+|++++++|++. +++|+++||++|++.++++ |. +||+++ +||+.. +++|+++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~----------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~---~~g~~~-~~G~~~~ 66 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH----------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIV---ADGDLS-WSGFRPD 66 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHcCCcccCEEE---ECCCcE-EeccCHH
Confidence 5899999999999999999987 8999999999998766655 64 799999 778655 6669999
Q ss_pred HHHHH
Q 031531 126 RIEAW 130 (158)
Q Consensus 126 ~L~~~ 130 (158)
+|.++
T Consensus 67 ~~~~~ 71 (72)
T TIGR02194 67 KLKAL 71 (72)
T ss_pred HHHhc
Confidence 99875
No 4
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.60 E-value=4.7e-15 Score=103.04 Aligned_cols=74 Identities=19% Similarity=0.390 Sum_probs=60.7
Q ss_pred CCCCCCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH---HHHhcC-CccceEEEeccCCeE
Q 031531 41 SSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQ-YEIPVLARVLSDGTE 116 (158)
Q Consensus 41 s~~~~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e---l~ekyg-~~VPVL~i~~idGe~ 116 (158)
.|+....++|+||+++|||+|.++|++|++. +++|+++||+++++ +.+.+| .+||+++ +||+.
T Consensus 1 ~~~~~~~~~V~ly~~~~Cp~C~~ak~~L~~~----------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~---i~g~~ 67 (79)
T TIGR02190 1 APQARKPESVVVFTKPGCPFCAKAKATLKEK----------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF---IGGKL 67 (79)
T ss_pred CCCcCCCCCEEEEECCCCHhHHHHHHHHHHc----------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE---ECCEE
Confidence 3677888999999999999999999999987 89999999998743 444456 4799999 79974
Q ss_pred EEecCCCHHHHHHHH
Q 031531 117 VLMACINRFRIEAWL 131 (158)
Q Consensus 117 i~~grfd~d~L~~~L 131 (158)
+ |++ ++|.++|
T Consensus 68 i--gG~--~~l~~~l 78 (79)
T TIGR02190 68 I--GGS--DELEAYL 78 (79)
T ss_pred E--cCH--HHHHHHh
Confidence 3 324 8888876
No 5
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.55 E-value=3.1e-14 Score=99.63 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=59.8
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH----HHHHhcC---CccceEEEeccCCeEEEec
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQ---YEIPVLARVLSDGTEVLMA 120 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~----el~ekyg---~~VPVL~i~~idGe~i~~g 120 (158)
|+|++|+++|||+|++|+++|+++. .+..+++|+++||++++ ++.+.++ ..||+++ +||+.+ |
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~-----~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if---i~g~~i--g 70 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLS-----EERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF---VDQKHI--G 70 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhc-----ccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE---ECCEEE--c
Confidence 6899999999999999999999973 12258999999999764 5666666 5799999 799865 3
Q ss_pred CCCHHHHHHHHHhc
Q 031531 121 CINRFRIEAWLSQM 134 (158)
Q Consensus 121 rfd~d~L~~~L~~~ 134 (158)
.-++|.+++++.
T Consensus 71 --g~~~~~~~~~~~ 82 (85)
T PRK11200 71 --GCTDFEAYVKEN 82 (85)
T ss_pred --CHHHHHHHHHHh
Confidence 238888887653
No 6
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.54 E-value=9.4e-15 Score=106.67 Aligned_cols=76 Identities=24% Similarity=0.474 Sum_probs=59.0
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH---HHHhc----C-CccceEEEeccCCeE
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSY----Q-YEIPVLARVLSDGTE 116 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e---l~eky----g-~~VPVL~i~~idGe~ 116 (158)
.+..+|++|++++||+|.++|++|++. +++|+++||+++++ +++.+ | .+||+++ +||+
T Consensus 5 i~~~~Vvvysk~~Cp~C~~ak~~L~~~----------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf---i~g~- 70 (99)
T TIGR02189 5 VSEKAVVIFSRSSCCMCHVVKRLLLTL----------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF---VGGK- 70 (99)
T ss_pred hccCCEEEEECCCCHHHHHHHHHHHHc----------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE---ECCE-
Confidence 345679999999999999999999997 89999999998764 32333 3 4799999 7997
Q ss_pred EEecCCCH-------HHHHHHHHhcC
Q 031531 117 VLMACINR-------FRIEAWLSQMS 135 (158)
Q Consensus 117 i~~grfd~-------d~L~~~L~~~~ 135 (158)
.+|+|+. .+|.++|+++|
T Consensus 71 -~iGG~ddl~~l~~~G~L~~~l~~~~ 95 (99)
T TIGR02189 71 -LVGGLENVMALHISGSLVPMLKQAG 95 (99)
T ss_pred -EEcCHHHHHHHHHcCCHHHHHHHhC
Confidence 4565765 46666666654
No 7
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.50 E-value=1.5e-13 Score=97.37 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=57.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH----HHHHhcC---CccceEEEeccCCeEEEecCC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQ---YEIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~----el~ekyg---~~VPVL~i~~idGe~i~~grf 122 (158)
|++|+++|||+|.++|++|+++. .+..+++|+++||+.+. ++.+.+| .+||+++ +||+.+ |+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~-----~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if---i~g~~i--gG- 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLA-----IERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF---VDEKHV--GG- 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhC-----cccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE---ECCEEe--cC-
Confidence 78999999999999999999973 12236899999998644 5777777 5899999 799855 32
Q ss_pred CHHHHHHHHHh
Q 031531 123 NRFRIEAWLSQ 133 (158)
Q Consensus 123 d~d~L~~~L~~ 133 (158)
-++|.+++.+
T Consensus 71 -~~dl~~~~~~ 80 (86)
T TIGR02183 71 -CTDFEQLVKE 80 (86)
T ss_pred -HHHHHHHHHh
Confidence 3889888765
No 8
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.49 E-value=1.3e-13 Score=93.44 Aligned_cols=67 Identities=19% Similarity=0.392 Sum_probs=54.7
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHH---HHhcC-CccceEEEeccCCeEEEecCCCH
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW---EKSYQ-YEIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el---~ekyg-~~VPVL~i~~idGe~i~~grfd~ 124 (158)
+|++||++|||+|.++|++|++. +++|+++||+++++. .+..| ..||+++ +||+.+ | ..
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~----------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if---i~g~~i--g--g~ 64 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN----------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF---IDGELI--G--GS 64 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc----------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE---ECCEEE--e--CH
Confidence 68999999999999999999987 899999999987742 23345 4799999 799854 3 35
Q ss_pred HHHHHHHH
Q 031531 125 FRIEAWLS 132 (158)
Q Consensus 125 d~L~~~L~ 132 (158)
++|.++|.
T Consensus 65 ~~l~~~l~ 72 (72)
T cd03029 65 DDLEKYFA 72 (72)
T ss_pred HHHHHHhC
Confidence 88888873
No 9
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.49 E-value=1.9e-13 Score=90.70 Aligned_cols=65 Identities=12% Similarity=0.325 Sum_probs=56.9
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEecC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMAC 121 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~gr 121 (158)
+|++|+++||++|..+++.|+++. ....+++|.++|+++++++.++||. ++|+++ +||+.++.|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~-----~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~---i~~~~~~~g~ 67 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIA-----ALNPNISAEMIDAAEFPDLADEYGVMSVPAIV---INGKVEFVGR 67 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHH-----HhCCceEEEEEEcccCHhHHHHcCCcccCEEE---ECCEEEEecC
Confidence 689999999999999999999984 2334799999999999999999997 699999 7998877763
No 10
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.5e-13 Score=97.06 Aligned_cols=69 Identities=28% Similarity=0.425 Sum_probs=55.2
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH--HH---HHhc-C-CccceEEEeccCCeEEEec
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--EW---EKSY-Q-YEIPVLARVLSDGTEVLMA 120 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~--el---~eky-g-~~VPVL~i~~idGe~i~~g 120 (158)
++|++||+++||+|.++|++|++. +++|+++|+++++ +. .++. | .+||+|+ +||+.+ +|
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~----------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~---i~~~~i-gg 66 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRK----------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF---IGGKHV-GG 66 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHc----------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE---ECCEEE-eC
Confidence 368999999999999999999987 9999999999877 32 2233 4 4799999 788755 55
Q ss_pred CCCHHHHHHH
Q 031531 121 CINRFRIEAW 130 (158)
Q Consensus 121 rfd~d~L~~~ 130 (158)
.++.+++.+.
T Consensus 67 ~~d~~~~~~~ 76 (80)
T COG0695 67 CDDLDALEAK 76 (80)
T ss_pred cccHHHHHhh
Confidence 5788777654
No 11
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.46 E-value=8.4e-13 Score=89.55 Aligned_cols=79 Identities=15% Similarity=0.350 Sum_probs=66.4
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEecCCCHHHH
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINRFRI 127 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~grfd~d~L 127 (158)
+|++|+++||++|..+++.|+++.. .....+++..||+++++++.++||. .+|+++ +||+....|..++++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~----~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~---~~g~~~~~G~~~~~~l 74 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAK----EMGDAVEVEYINVMENPQKAMEYGIMAVPAIV---INGDVEFIGAPTKEEL 74 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHH----HhcCceEEEEEeCccCHHHHHHcCCccCCEEE---ECCEEEEecCCCHHHH
Confidence 6899999999999999999998631 1123488999999999999999996 599999 6888666787799999
Q ss_pred HHHHHhc
Q 031531 128 EAWLSQM 134 (158)
Q Consensus 128 ~~~L~~~ 134 (158)
+++|+++
T Consensus 75 ~~~l~~~ 81 (82)
T TIGR00411 75 VEAIKKR 81 (82)
T ss_pred HHHHHhh
Confidence 9998764
No 12
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.46 E-value=4.5e-13 Score=87.72 Aligned_cols=69 Identities=19% Similarity=0.361 Sum_probs=57.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHH----HHhcCC-ccceEEEeccCCeEEEecCCC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW----EKSYQY-EIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el----~ekyg~-~VPVL~i~~idGe~i~~grfd 123 (158)
+|++|+.+||++|.+++..|++. +++|+++||+++++. .+.++. .+|+++ ++|+. ..| ++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~----------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~---~~~~~-~~g-~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSK----------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIV---IGHKI-IVG-FD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHC----------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEE---ECCEE-Eee-CC
Confidence 38999999999999999999886 899999999988764 445775 699999 67764 455 89
Q ss_pred HHHHHHHHH
Q 031531 124 RFRIEAWLS 132 (158)
Q Consensus 124 ~d~L~~~L~ 132 (158)
+++|+++|+
T Consensus 66 ~~~i~~~i~ 74 (74)
T TIGR02196 66 PEKLDQLLE 74 (74)
T ss_pred HHHHHHHhC
Confidence 999999874
No 13
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.45 E-value=3.9e-13 Score=92.15 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=58.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhc----C-CccceEEEeccCCeEEEecCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----Q-YEIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~eky----g-~~VPVL~i~~idGe~i~~grfd~ 124 (158)
|++|++++||+|.+++++|++. +++|+++||++|+++++++ | ..+|+++ +||+.+ |+|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~----------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~---i~g~~i--gg~-- 63 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK----------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF---IGDVHV--GGC-- 63 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc----------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE---ECCEEE--cCh--
Confidence 6899999999999999999987 8999999999998766654 4 4799999 799744 434
Q ss_pred HHHHHHHHhcCCC
Q 031531 125 FRIEAWLSQMSLD 137 (158)
Q Consensus 125 d~L~~~L~~~~l~ 137 (158)
+++.++.++..|+
T Consensus 64 ~~~~~~~~~g~l~ 76 (79)
T TIGR02181 64 DDLYALDREGKLD 76 (79)
T ss_pred HHHHHHHHcCChh
Confidence 7777777776664
No 14
>PRK10638 glutaredoxin 3; Provisional
Probab=99.44 E-value=7e-13 Score=92.56 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=59.4
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhc----CC-ccceEEEeccCCeEEEecC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----QY-EIPVLARVLSDGTEVLMAC 121 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~eky----g~-~VPVL~i~~idGe~i~~gr 121 (158)
|.+|++|++++||+|++++.+|++. +++|+++||+++++..+.+ |. +||+++ +||+.+ |+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~----------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~---~~g~~i--gG 65 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSK----------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF---IDAQHI--GG 65 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHc----------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE---ECCEEE--eC
Confidence 3479999999999999999999997 8999999999887654443 44 699999 788744 43
Q ss_pred CCHHHHHHHHHhcCCC
Q 031531 122 INRFRIEAWLSQMSLD 137 (158)
Q Consensus 122 fd~d~L~~~L~~~~l~ 137 (158)
| +++.++-.+..|.
T Consensus 66 ~--~~~~~~~~~g~l~ 79 (83)
T PRK10638 66 C--DDLYALDARGGLD 79 (83)
T ss_pred H--HHHHHHHHcCCHH
Confidence 4 8888877776664
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.42 E-value=1.3e-12 Score=88.07 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=52.7
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh----cCC--ccceEEEeccCCeEEEecCC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQY--EIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek----yg~--~VPVL~i~~idGe~i~~grf 122 (158)
+|++|++++||+|.+++++|++. +++|+++||+++++..++ ++. +||+++ +||+.+ |+|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~----------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~---i~g~~i--gg~ 65 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKK----------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF---IGDVHI--GGC 65 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC----------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE---ECCEEE--eCh
Confidence 48999999999999999999987 899999999998765443 453 799999 799754 434
Q ss_pred CHHHHHHHH
Q 031531 123 NRFRIEAWL 131 (158)
Q Consensus 123 d~d~L~~~L 131 (158)
+++.++-
T Consensus 66 --~~~~~~~ 72 (75)
T cd03418 66 --DDLYALE 72 (75)
T ss_pred --HHHHHHH
Confidence 5665543
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.41 E-value=1.4e-12 Score=88.72 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=52.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHH----hcC-CccceEEEeccCCeEEEecCCC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----SYQ-YEIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~e----kyg-~~VPVL~i~~idGe~i~~grfd 123 (158)
+|++|++++||+|.+++++|++. +++|+++||+++++..+ ..+ ..+|+++ +||+.+ | .
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~----------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~---i~~~~i--G--g 64 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREK----------GLPYVEINIDIFPERKAELEERTGSSVVPQIF---FNEKLV--G--G 64 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE---ECCEEE--e--C
Confidence 68999999999999999999997 89999999998886443 345 4799999 799744 4 3
Q ss_pred HHHHHHH
Q 031531 124 RFRIEAW 130 (158)
Q Consensus 124 ~d~L~~~ 130 (158)
.++|.++
T Consensus 65 ~~~~~~~ 71 (73)
T cd03027 65 LTDLKSL 71 (73)
T ss_pred HHHHHhh
Confidence 4676653
No 17
>PHA03050 glutaredoxin; Provisional
Probab=99.39 E-value=1.1e-12 Score=97.66 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=55.4
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCc---ceEEEEcCC---CHHHHH----hcC-CccceEEEeccCCe
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDV---DLQVRDITT---NPEWEK----SYQ-YEIPVLARVLSDGT 115 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I---~~eeIDId~---d~el~e----kyg-~~VPVL~i~~idGe 115 (158)
..+|++|+++|||+|.++|++|++. ++ +|+++||++ +.++++ ..| .+||+++ +||+
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~----------~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If---I~g~ 78 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKF----------SFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF---FGKT 78 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHc----------CCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE---ECCE
Confidence 4579999999999999999999997 56 899999996 444333 345 4799999 7997
Q ss_pred EEEecCCCH-------HHHHHHHHhcCC
Q 031531 116 EVLMACINR-------FRIEAWLSQMSL 136 (158)
Q Consensus 116 ~i~~grfd~-------d~L~~~L~~~~l 136 (158)
. .|+|+. .+|.+.|+++|.
T Consensus 79 ~--iGG~ddl~~l~~~g~L~~~l~~~~~ 104 (108)
T PHA03050 79 S--IGGYSDLLEIDNMDALGDILSSIGV 104 (108)
T ss_pred E--EeChHHHHHHHHcCCHHHHHHHccc
Confidence 4 344533 255555655554
No 18
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.38 E-value=1.5e-12 Score=85.56 Aligned_cols=55 Identities=27% Similarity=0.510 Sum_probs=47.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh----cC-CccceEEEeccCCeEE
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQ-YEIPVLARVLSDGTEV 117 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek----yg-~~VPVL~i~~idGe~i 117 (158)
|++|++++||+|.+++++|++. +++|+++||+++++.++. .| .++|+++ +||+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~----------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~---i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK----------GIPYEEVDVDEDEEAREELKELSGVRTVPQVF---IDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT----------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE---ETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc----------CCeeeEcccccchhHHHHHHHHcCCCccCEEE---ECCEEC
Confidence 7899999999999999999987 899999999999764443 36 4799999 799753
No 19
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.32 E-value=8e-12 Score=81.76 Aligned_cols=68 Identities=22% Similarity=0.432 Sum_probs=56.0
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhc----C-CccceEEEeccCCeEEEecCCC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----Q-YEIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~eky----g-~~VPVL~i~~idGe~i~~grfd 123 (158)
++++|+++||+.|.+++.+|++. +++|..+||+.+++..+.+ + ..+|+++ .+|+ ...| ++
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~----------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~---~~~~-~i~g-~~ 65 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDER----------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVV---IGDE-HLSG-FR 65 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHC----------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEE---ECCE-EEec-CC
Confidence 47999999999999999999886 8999999999887655544 3 4799999 6775 3344 89
Q ss_pred HHHHHHHH
Q 031531 124 RFRIEAWL 131 (158)
Q Consensus 124 ~d~L~~~L 131 (158)
+++|+++|
T Consensus 66 ~~~l~~~~ 73 (73)
T cd02976 66 PDKLRALL 73 (73)
T ss_pred HHHHHhhC
Confidence 99999875
No 20
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.32 E-value=1.1e-11 Score=82.82 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=56.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhc-----C-CccceEEEeccCCeEEEecCC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY-----Q-YEIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~eky-----g-~~VPVL~i~~idGe~i~~grf 122 (158)
+|++|+++||+.|.+++.+|+++ +++|+.+|++++++..+.+ + ..||+++. .||+.+ ...
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~----------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~--~~g~~l--~~~ 66 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKL----------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKF--ADGSFL--TNP 66 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHc----------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEE--CCCeEe--cCC
Confidence 48999999999999999999987 8999999999888765553 5 47999972 356543 346
Q ss_pred CHHHHHHHHHh
Q 031531 123 NRFRIEAWLSQ 133 (158)
Q Consensus 123 d~d~L~~~L~~ 133 (158)
+.++|.+.|++
T Consensus 67 ~~~~~~~~l~~ 77 (77)
T TIGR02200 67 SAAQVKAKLQE 77 (77)
T ss_pred CHHHHHHHhhC
Confidence 88899888864
No 21
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.31 E-value=1.4e-11 Score=89.63 Aligned_cols=75 Identities=24% Similarity=0.296 Sum_probs=60.0
Q ss_pred CCceEEEEeC-----CCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh----cC-CccceEEEeccCCe
Q 031531 46 STRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQ-YEIPVLARVLSDGT 115 (158)
Q Consensus 46 ~~~~VtLYTk-----pgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek----yg-~~VPVL~i~~idGe 115 (158)
+..+|++|++ |+||+|.++|++|++. +++|+++||++|++.++. .| ..||.++ +||+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf---i~g~ 76 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKAC----------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY---VKGE 76 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE---ECCE
Confidence 3467999988 9999999999999997 899999999988875543 34 3799999 7998
Q ss_pred EEEecCCCHHHHHHHHHhcCCC
Q 031531 116 EVLMACINRFRIEAWLSQMSLD 137 (158)
Q Consensus 116 ~i~~grfd~d~L~~~L~~~~l~ 137 (158)
.+ |++ ++|.++.++-.|.
T Consensus 77 ~i--GG~--ddl~~l~~~g~L~ 94 (97)
T TIGR00365 77 FV--GGC--DIIMEMYQSGELQ 94 (97)
T ss_pred EE--eCh--HHHHHHHHCcChH
Confidence 54 323 8888877766654
No 22
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.30 E-value=1.9e-11 Score=87.18 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=59.0
Q ss_pred CCceEEEEeC-----CCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh----cC-CccceEEEeccCCe
Q 031531 46 STRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQ-YEIPVLARVLSDGT 115 (158)
Q Consensus 46 ~~~~VtLYTk-----pgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek----yg-~~VPVL~i~~idGe 115 (158)
...+|++|++ |+|++|.++|++|++. +++|+++||++|++.++. .| .++|+|+ +||+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf---i~g~ 72 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY---VNGE 72 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE---ECCE
Confidence 4567999988 7999999999999997 899999999999875543 35 4799999 7997
Q ss_pred EEEecCCCHHHHHHHHHhcCC
Q 031531 116 EVLMACINRFRIEAWLSQMSL 136 (158)
Q Consensus 116 ~i~~grfd~d~L~~~L~~~~l 136 (158)
.+ |++ +++.++.++-.|
T Consensus 73 ~i--GG~--~~l~~l~~~g~L 89 (90)
T cd03028 73 LV--GGC--DIVKEMHESGEL 89 (90)
T ss_pred EE--eCH--HHHHHHHHcCCc
Confidence 44 433 788887665544
No 23
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.30 E-value=1.4e-11 Score=79.97 Aligned_cols=65 Identities=22% Similarity=0.398 Sum_probs=51.6
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh----cCC-ccceEEEeccCCeEEEecCCC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQY-EIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek----yg~-~VPVL~i~~idGe~i~~grfd 123 (158)
+|++|++++|++|.+++.+|++. +++|+++||+++++..+. .+. .+|+++ +||+.+ .| +
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~----------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~---~~~~~i-gg-~- 64 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESL----------GIEFEEIDILEDGELREELKELSGWPTVPQIF---INGEFI-GG-Y- 64 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc----------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE---ECCEEE-ec-H-
Confidence 48999999999999999999997 799999999998864443 354 799999 788754 22 3
Q ss_pred HHHHHHH
Q 031531 124 RFRIEAW 130 (158)
Q Consensus 124 ~d~L~~~ 130 (158)
++|.++
T Consensus 65 -~~~~~~ 70 (72)
T cd02066 65 -DDLKAL 70 (72)
T ss_pred -HHHHHh
Confidence 555554
No 24
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.29 E-value=1.7e-11 Score=84.96 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=57.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEecC-CCHH
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMAC-INRF 125 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~gr-fd~d 125 (158)
|+|.+|+ +|||+|+.+++.++++. ++.+..++.++|++.++ ..+||. .+|+++ +||+.++.|. .+.+
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~------~e~~~~~~~~~v~~~~~-a~~~~v~~vPti~---i~G~~~~~G~~~~~~ 69 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAV------EELGIDAEFEKVTDMNE-ILEAGVTATPGVA---VDGELVIMGKIPSKE 69 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHH------HHcCCCeEEEEeCCHHH-HHHcCCCcCCEEE---ECCEEEEEeccCCHH
Confidence 4688888 99999999999888873 34467788888884444 567885 799999 7999887775 4558
Q ss_pred HHHHHHH
Q 031531 126 RIEAWLS 132 (158)
Q Consensus 126 ~L~~~L~ 132 (158)
+|.++|+
T Consensus 70 ~l~~~l~ 76 (76)
T TIGR00412 70 EIKEILK 76 (76)
T ss_pred HHHHHhC
Confidence 8888763
No 25
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.27 E-value=2.9e-11 Score=86.80 Aligned_cols=75 Identities=11% Similarity=0.094 Sum_probs=64.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEecCCCH
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~grfd~ 124 (158)
...+|.+|+.+||++|..++++++++. ....+++++.+|+++.+++.++||. ++|.++ +||+..+.|+.+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~-----~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~v---idG~~~~~G~~~~ 83 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMA-----VLNPNIEHEMIDGALFQDEVEERGIMSVPAIF---LNGELFGFGRMTL 83 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHH-----HHCCCceEEEEEhHhCHHHHHHcCCccCCEEE---ECCEEEEeCCCCH
Confidence 445899999999999999999999984 2344799999999999999999997 699999 7999888887776
Q ss_pred HHHH
Q 031531 125 FRIE 128 (158)
Q Consensus 125 d~L~ 128 (158)
+++.
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 7654
No 26
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.25 E-value=1.8e-11 Score=83.30 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=53.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcc--eEEEEcCC--CHH-----HHHhcCC-ccceEEEeccCCeEEEe
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVD--LQVRDITT--NPE-----WEKSYQY-EIPVLARVLSDGTEVLM 119 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~--~eeIDId~--d~e-----l~ekyg~-~VPVL~i~~idGe~i~~ 119 (158)
|++|+++|||+|.+++++|+++ +++ |+.+||+. +++ +.+.+|. ++|+++ +||+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~----------~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~---i~g~~i-- 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKL----------NVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF---INGKFI-- 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHc----------CCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE---ECCEEE--
Confidence 5899999999999999999997 344 55555553 332 4445665 799999 799754
Q ss_pred cCCCHHHHHHHHHhcCCCc
Q 031531 120 ACINRFRIEAWLSQMSLDC 138 (158)
Q Consensus 120 grfd~d~L~~~L~~~~l~~ 138 (158)
| ..+++.++.++..|..
T Consensus 66 g--g~~~~~~~~~~g~l~~ 82 (84)
T TIGR02180 66 G--GCSDLLALYKSGKLAE 82 (84)
T ss_pred c--CHHHHHHHHHcCChhh
Confidence 3 2489999988877753
No 27
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.25 E-value=2.8e-11 Score=82.41 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=54.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC---HH----HHHhcCC-ccceEEEeccCCeEEEec
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN---PE----WEKSYQY-EIPVLARVLSDGTEVLMA 120 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d---~e----l~ekyg~-~VPVL~i~~idGe~i~~g 120 (158)
+|++|+++|||+|++++++|+++ +++|+.+||+.+ .+ +.+.+|. ++|+++ +||+.+ |
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~---~~g~~i--g 65 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKEL----------GVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF---IGGKFI--G 65 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHc----------CCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE---ECCEEE--c
Confidence 48999999999999999999998 566776666643 22 3333455 799999 799754 3
Q ss_pred CCCHHHHHHHHHhcCCC
Q 031531 121 CINRFRIEAWLSQMSLD 137 (158)
Q Consensus 121 rfd~d~L~~~L~~~~l~ 137 (158)
..+++.++.++-.|.
T Consensus 66 --g~~~~~~~~~~g~l~ 80 (82)
T cd03419 66 --GCDDLMALHKSGKLV 80 (82)
T ss_pred --CHHHHHHHHHcCCcc
Confidence 348888888877764
No 28
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.22 E-value=2.2e-11 Score=108.32 Aligned_cols=75 Identities=16% Similarity=0.289 Sum_probs=58.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH---HHHh---------cC-CccceEEEeccC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKS---------YQ-YEIPVLARVLSD 113 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e---l~ek---------yg-~~VPVL~i~~id 113 (158)
|++|++||++|||+|+++|++|++. |++|+++||++|++ +.++ .| .+||+++ +|
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~----------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~if---i~ 67 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGAN----------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIF---VG 67 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHC----------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEE---EC
Confidence 4579999999999999999999997 89999999998884 3223 24 4799999 78
Q ss_pred CeEEEecCCCHH-----HHHHHHHhcCC
Q 031531 114 GTEVLMACINRF-----RIEAWLSQMSL 136 (158)
Q Consensus 114 Ge~i~~grfd~d-----~L~~~L~~~~l 136 (158)
|+ .+|+|++. +|.++++..+|
T Consensus 68 ~~--~igGf~~l~~~~g~l~~~~~~~~~ 93 (410)
T PRK12759 68 DV--HIGGYDNLMARAGEVIARVKGSSL 93 (410)
T ss_pred CE--EEeCchHHHHHhCCHHHHhcCCcc
Confidence 86 45668663 56666666665
No 29
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.15 E-value=1.5e-10 Score=80.03 Aligned_cols=74 Identities=23% Similarity=0.425 Sum_probs=59.4
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEec-CCCHH
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMA-CINRF 125 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~g-rfd~d 125 (158)
|+|.+ .+++|+.|..+.+.+++.. ...+++++.+|+++.+++ .+||. ++|.++ +||+..+.| ..+.+
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~------~~~~i~~ei~~~~~~~~~-~~ygv~~vPalv---Ing~~~~~G~~p~~~ 69 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAA------EELGIEVEIIDIEDFEEI-EKYGVMSVPALV---INGKVVFVGRVPSKE 69 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHH------HHTTEEEEEEETTTHHHH-HHTT-SSSSEEE---ETTEEEEESS--HHH
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHH------HhcCCeEEEEEccCHHHH-HHcCCCCCCEEE---ECCEEEEEecCCCHH
Confidence 57888 5777999999999998873 334799999999555555 99996 699999 899998999 78889
Q ss_pred HHHHHHH
Q 031531 126 RIEAWLS 132 (158)
Q Consensus 126 ~L~~~L~ 132 (158)
+|+++|+
T Consensus 70 el~~~l~ 76 (76)
T PF13192_consen 70 ELKELLE 76 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999985
No 30
>PRK10824 glutaredoxin-4; Provisional
Probab=99.13 E-value=1.9e-10 Score=87.21 Aligned_cols=71 Identities=23% Similarity=0.314 Sum_probs=55.0
Q ss_pred CCceEEEEeC-----CCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhc----C-CccceEEEeccCCe
Q 031531 46 STRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----Q-YEIPVLARVLSDGT 115 (158)
Q Consensus 46 ~~~~VtLYTk-----pgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~eky----g-~~VPVL~i~~idGe 115 (158)
+..+|++|++ |+||+|.++|++|+.. +++|.++||++|++.++.. | .+||.|+ +||+
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~----------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF---I~G~ 79 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC----------GERFAYVDILQNPDIRAELPKYANWPTFPQLW---VDGE 79 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc----------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEE---ECCE
Confidence 3467999998 6999999999999997 8999999999998765543 4 4799999 8998
Q ss_pred EEEecCCCHHHHHHHHHh
Q 031531 116 EVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 116 ~i~~grfd~d~L~~~L~~ 133 (158)
.+ |+. ++|.++.+.
T Consensus 80 ~I--GG~--ddl~~l~~~ 93 (115)
T PRK10824 80 LV--GGC--DIVIEMYQR 93 (115)
T ss_pred EE--cCh--HHHHHHHHC
Confidence 55 434 445444433
No 31
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.05 E-value=1.7e-09 Score=79.93 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=62.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEecc---CCeEEEecCCCHH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLS---DGTEVLMACINRF 125 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~i---dGe~i~~grfd~d 125 (158)
+.+|+++||++|..++++|+++.. ....+++..+|+++++++.++|+. .+|.+++-.. +|+..+.|-.+..
T Consensus 26 vv~f~a~wC~~C~~~~~~l~~la~-----~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~ 100 (113)
T cd02975 26 VVFSSKEGCQYCEVTKQLLEELSE-----LSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGY 100 (113)
T ss_pred EEEeCCCCCCChHHHHHHHHHHHH-----hcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchH
Confidence 444589999999999999999842 234689999999999999999996 6999996311 2334566777788
Q ss_pred HHHHHHHh
Q 031531 126 RIEAWLSQ 133 (158)
Q Consensus 126 ~L~~~L~~ 133 (158)
++.++|..
T Consensus 101 el~~~i~~ 108 (113)
T cd02975 101 EFASLIED 108 (113)
T ss_pred HHHHHHHH
Confidence 99888865
No 32
>PHA02125 thioredoxin-like protein
Probab=99.02 E-value=2.2e-09 Score=73.77 Aligned_cols=68 Identities=16% Similarity=0.295 Sum_probs=54.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--EecCCCH--
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACINR-- 124 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~grfd~-- 124 (158)
|++|+.+||+.|..+++.|++. .+.+-.+|+++++++.++|+. .+|+++ +|+.+ ..| +++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~----------~~~~~~vd~~~~~~l~~~~~v~~~PT~~----~g~~~~~~~G-~~~~~ 66 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV----------EYTYVDVDTDEGVELTAKHHIRSLPTLV----NTSTLDRFTG-VPRNV 66 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH----------hheEEeeeCCCCHHHHHHcCCceeCeEE----CCEEEEEEeC-CCCcH
Confidence 8999999999999999999876 466777888889999999996 699987 67643 345 655
Q ss_pred HHHHHHHH
Q 031531 125 FRIEAWLS 132 (158)
Q Consensus 125 d~L~~~L~ 132 (158)
.+|++.|+
T Consensus 67 ~~l~~~~~ 74 (75)
T PHA02125 67 AELKEKLG 74 (75)
T ss_pred HHHHHHhC
Confidence 67776653
No 33
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.96 E-value=4.7e-09 Score=84.96 Aligned_cols=82 Identities=10% Similarity=0.173 Sum_probs=66.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEecCCCH
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~grfd~ 124 (158)
....|++|+.+||++|..++..++++. ..+..+.+..+|+++++++.++|+. ++|.+++. .+|+. ..|..+.
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~-----~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~-~~~~~-~~G~~~~ 205 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFA-----LANDKILGEMIEANENPDLAEKYGVMSVPKIVIN-KGVEE-FVGAYPE 205 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHH-----HhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEe-cCCEE-EECCCCH
Confidence 344788899999999999999999874 2345789999999999999999997 79999953 23433 6787788
Q ss_pred HHHHHHHHhc
Q 031531 125 FRIEAWLSQM 134 (158)
Q Consensus 125 d~L~~~L~~~ 134 (158)
++|.++|..+
T Consensus 206 ~~l~~~l~~~ 215 (215)
T TIGR02187 206 EQFLEYILSA 215 (215)
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 34
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.95 E-value=4e-09 Score=82.93 Aligned_cols=68 Identities=16% Similarity=0.321 Sum_probs=52.8
Q ss_pred eEEEEeCC------CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHH----hcC-----CccceEEEeccC
Q 031531 49 KLVLYSKP------GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----SYQ-----YEIPVLARVLSD 113 (158)
Q Consensus 49 ~VtLYTkp------gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~e----kyg-----~~VPVL~i~~id 113 (158)
+|+|||++ +|++|.++|++|+.+ +++|+++||+.|+++.+ ..+ ..+|.|+ ++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~----------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF---I~ 67 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESF----------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF---VD 67 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHC----------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE---EC
Confidence 48999999 999999999999997 89999999998876443 334 4799999 79
Q ss_pred CeEEEecCCCHHHHHHHHHh
Q 031531 114 GTEVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 114 Ge~i~~grfd~d~L~~~L~~ 133 (158)
|+.+ | ..+++.++-++
T Consensus 68 G~~I--G--G~del~~L~e~ 83 (147)
T cd03031 68 GRYL--G--GAEEVLRLNES 83 (147)
T ss_pred CEEE--e--cHHHHHHHHHc
Confidence 9755 3 23555554433
No 35
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.91 E-value=1.9e-08 Score=69.71 Aligned_cols=84 Identities=20% Similarity=0.270 Sum_probs=68.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--EecCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACI 122 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~grf 122 (158)
...-|+.|+++||+.|...++.++++.. .... ++.+-.+|+++++++.++|+. .+|.++.- .+|+.. ..|..
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~---~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~ 91 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAK---EYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFF-KNGKEVKRYNGPR 91 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHH---HTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEE-ETTEEEEEEESSS
T ss_pred CCCEEEEEeCCCCCccccccceeccccc---cccc-ccccchhhhhccchhhhccCCCCCCEEEEE-ECCcEEEEEECCC
Confidence 3667899999999999999999998752 1122 899999999999999999997 59999854 677753 46767
Q ss_pred CHHHHHHHHHhc
Q 031531 123 NRFRIEAWLSQM 134 (158)
Q Consensus 123 d~d~L~~~L~~~ 134 (158)
++++|.++|+++
T Consensus 92 ~~~~l~~~i~~~ 103 (103)
T PF00085_consen 92 NAESLIEFIEKH 103 (103)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC
Confidence 999999999863
No 36
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.91 E-value=1.9e-08 Score=71.21 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=65.1
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--EecCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACI 122 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~grf 122 (158)
..+-+.+|+.+||+.|..+++.|+++.. .-..++.+.++|+++++++.++++. .+|.+++- .||+.+ ..|..
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~----~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~-~~g~~v~~~~g~~ 87 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVID----EFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFF-KDKELVKEISGVK 87 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHH----HhCCceEEEEEECCCCHHHHHHCCCeeccEEEEE-ECCeEEEEEeCCc
Confidence 3456889999999999999999988631 1113589999999999999999996 69999865 578754 35667
Q ss_pred CHHHHHHHHH
Q 031531 123 NRFRIEAWLS 132 (158)
Q Consensus 123 d~d~L~~~L~ 132 (158)
++++|.++|+
T Consensus 88 ~~~~~~~~l~ 97 (97)
T cd02949 88 MKSEYREFIE 97 (97)
T ss_pred cHHHHHHhhC
Confidence 8889888873
No 37
>PTZ00062 glutaredoxin; Provisional
Probab=98.89 E-value=6.6e-09 Score=85.47 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=59.5
Q ss_pred CCceEEEEeC-----CCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh----cCC-ccceEEEeccCCe
Q 031531 46 STRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQY-EIPVLARVLSDGT 115 (158)
Q Consensus 46 ~~~~VtLYTk-----pgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek----yg~-~VPVL~i~~idGe 115 (158)
+..+|.+|++ |+|++|.++|++|++. +++|+++||++|++.++. .|. +||+|+ +||+
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~----------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf---I~G~ 177 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS----------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY---VNGE 177 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHc----------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE---ECCE
Confidence 3567999988 7999999999999997 899999999999875543 343 799999 8998
Q ss_pred EEEecCCCHHHHHHHHHhcCCCc
Q 031531 116 EVLMACINRFRIEAWLSQMSLDC 138 (158)
Q Consensus 116 ~i~~grfd~d~L~~~L~~~~l~~ 138 (158)
.+ |++ +.+.++.+.-.|+.
T Consensus 178 ~I--GG~--d~l~~l~~~G~L~~ 196 (204)
T PTZ00062 178 LI--GGH--DIIKELYESNSLRK 196 (204)
T ss_pred EE--cCh--HHHHHHHHcCChhh
Confidence 55 434 67777666655543
No 38
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=9.9e-09 Score=81.46 Aligned_cols=83 Identities=17% Similarity=0.353 Sum_probs=69.9
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCc-cceEEEeccCCeEE--EecCCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEV--LMACIN 123 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~-VPVL~i~~idGe~i--~~grfd 123 (158)
.+-++-|..+||+.|+.+.+.|+++. + .-...|.+-.+|+|+++++.++|+.. ||++++ ..||+.. +.|..+
T Consensus 62 ~PVlVdF~A~WCgPCk~l~P~l~~~~---~-~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlv-fknGe~~d~~vG~~~ 136 (150)
T KOG0910|consen 62 VPVLVDFHAEWCGPCKMLGPILEELV---S-EYAGKFKLYKVDTDEHPELAEDYEISAVPTVLV-FKNGEKVDRFVGAVP 136 (150)
T ss_pred CCEEEEEecCcCccHhHhhHHHHHHH---H-hhcCeEEEEEEccccccchHhhcceeeeeEEEE-EECCEEeeeecccCC
Confidence 46688999999999999999999984 1 22457899999999999999999974 999985 4688854 578899
Q ss_pred HHHHHHHHHhc
Q 031531 124 RFRIEAWLSQM 134 (158)
Q Consensus 124 ~d~L~~~L~~~ 134 (158)
++.|++++++.
T Consensus 137 ~~~l~~~i~k~ 147 (150)
T KOG0910|consen 137 KEQLRSLIKKF 147 (150)
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 39
>PHA02278 thioredoxin-like protein
Probab=98.78 E-value=7e-08 Score=71.05 Aligned_cols=80 Identities=15% Similarity=0.234 Sum_probs=62.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC----HHHHHhcCC-ccceEEEeccCCeEE--E
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN----PEWEKSYQY-EIPVLARVLSDGTEV--L 118 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d----~el~ekyg~-~VPVL~i~~idGe~i--~ 118 (158)
..+-+..|+++||+.|+..++.++++.. ......++..+||+++ +++.++|+. ++|+++. ..||+.+ .
T Consensus 14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~----~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~-fk~G~~v~~~ 88 (103)
T PHA02278 14 KKDVIVMITQDNCGKCEILKSVIPMFQE----SGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIG-YKDGQLVKKY 88 (103)
T ss_pred CCcEEEEEECCCCHHHHhHHHHHHHHHh----hhcCCceEEEEECCccccccHHHHHHCCCccccEEEE-EECCEEEEEE
Confidence 4567889999999999999999999731 1123468999999986 689999996 6999985 3688866 3
Q ss_pred ecCCCHHHHHHH
Q 031531 119 MACINRFRIEAW 130 (158)
Q Consensus 119 ~grfd~d~L~~~ 130 (158)
.|..++++|.++
T Consensus 89 ~G~~~~~~l~~~ 100 (103)
T PHA02278 89 EDQVTPMQLQEL 100 (103)
T ss_pred eCCCCHHHHHhh
Confidence 566788888765
No 40
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.78 E-value=3.4e-08 Score=90.24 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=69.5
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEecCCCHH
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINRF 125 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~grfd~d 125 (158)
..+|++|..++||+|.++.+.++++. .+..+|+.+.+|+++.+++.++|++ .||.++ +||+..+.|+.+.+
T Consensus 477 ~~~i~v~~~~~C~~Cp~~~~~~~~~~-----~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~---i~~~~~~~G~~~~~ 548 (555)
T TIGR03143 477 PVNIKIGVSLSCTLCPDVVLAAQRIA-----SLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIV---VDDQQVYFGKKTIE 548 (555)
T ss_pred CeEEEEEECCCCCCcHHHHHHHHHHH-----HhCCCceEEEEECcccHHHHHhCCceecCEEE---ECCEEEEeeCCCHH
Confidence 45799999999999999999999884 2334799999999999999999997 599999 89998889999999
Q ss_pred HHHHHHH
Q 031531 126 RIEAWLS 132 (158)
Q Consensus 126 ~L~~~L~ 132 (158)
+|.++|+
T Consensus 549 ~~~~~~~ 555 (555)
T TIGR03143 549 EMLELIG 555 (555)
T ss_pred HHHHhhC
Confidence 9999874
No 41
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.77 E-value=1.3e-07 Score=62.74 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=64.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--EecCCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACIN 123 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~grfd 123 (158)
.+-+.+|+++||+.|.++++.+++... ...++.+-.+|+++++++.++|+. .+|+++.- .+|+.+ ..|..+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~-~~g~~~~~~~g~~~ 84 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAE-----EYPKVKFVKVDVDENPELAEEYGVRSIPTFLFF-KNGKEVDRVVGADP 84 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHH-----HCCCceEEEEECCCChhHHHhcCcccccEEEEE-ECCEEEEEEecCCC
Confidence 556899999999999999999999742 246899999999999999999996 69998853 467633 346566
Q ss_pred HHHHHHHHH
Q 031531 124 RFRIEAWLS 132 (158)
Q Consensus 124 ~d~L~~~L~ 132 (158)
+++|.++|+
T Consensus 85 ~~~l~~~i~ 93 (93)
T cd02947 85 KEELEEFLE 93 (93)
T ss_pred HHHHHHHhC
Confidence 688888763
No 42
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.76 E-value=5.9e-08 Score=70.97 Aligned_cols=86 Identities=7% Similarity=0.163 Sum_probs=68.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEE--ecC
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL--MAC 121 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~--~gr 121 (158)
...+.++.|..|||+.|....+.++++.. .....++.+-.+|+++++++.++++. ++|.+++- .+|+... .|.
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~---~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~-~~g~~~~~~~G~ 98 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQ---ELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI-INGQVTFYHDSS 98 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHH---HHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE-ECCEEEEEecCC
Confidence 45678999999999999999999888731 11123688999999999999999996 69998854 5887653 466
Q ss_pred CCHHHHHHHHHhc
Q 031531 122 INRFRIEAWLSQM 134 (158)
Q Consensus 122 fd~d~L~~~L~~~ 134 (158)
.+.++|.++|++.
T Consensus 99 ~~~~~l~~~i~~~ 111 (111)
T cd02963 99 FTKQHVVDFVRKL 111 (111)
T ss_pred CCHHHHHHHHhcC
Confidence 7899999999863
No 43
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.76 E-value=5.9e-08 Score=66.57 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=52.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH----HHHhcC-CccceEEEeccCCeEEEecCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE----WEKSYQ-YEIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e----l~ekyg-~~VPVL~i~~idGe~i~~grfd~ 124 (158)
++||+.++|++|.+++..|+++ +++|+.+||+.++. +.+..+ ..||+|+.. .+|..+ ++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~----------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~~l----~es 66 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL----------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDP-NTGVQM----FES 66 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc----------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeC-CCCeEE----EcH
Confidence 7899999999999999999998 89999999986542 332223 369999821 124333 567
Q ss_pred HHHHHHHHhc
Q 031531 125 FRIEAWLSQM 134 (158)
Q Consensus 125 d~L~~~L~~~ 134 (158)
..|.++|++.
T Consensus 67 ~~I~~yL~~~ 76 (77)
T cd03041 67 ADIVKYLFKT 76 (77)
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 44
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.75 E-value=1.4e-07 Score=65.76 Aligned_cols=82 Identities=12% Similarity=0.132 Sum_probs=65.1
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--EecCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACI 122 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~grf 122 (158)
..+-+..|.++||+.|...+..++++.. .-...+.+-.+|+++++++.++|+. .+|++++- .+|+.. ..|..
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~----~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~ 86 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAE----EYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLF-AAGQPVDGFQGAQ 86 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHH----HhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEE-eCCEEeeeecCCC
Confidence 4567889999999999999999988741 1112577899999999999999996 69999864 478754 45667
Q ss_pred CHHHHHHHHH
Q 031531 123 NRFRIEAWLS 132 (158)
Q Consensus 123 d~d~L~~~L~ 132 (158)
+.++|+++|+
T Consensus 87 ~~~~l~~~l~ 96 (96)
T cd02956 87 PEEQLRQMLD 96 (96)
T ss_pred CHHHHHHHhC
Confidence 8899998874
No 45
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.75 E-value=9.9e-08 Score=70.57 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=64.5
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEe------
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM------ 119 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~------ 119 (158)
..-+..|+.|||+.|..++..|+++. .+..++.|-+||+++++++.++|+. .+|+++. ..+|+++..
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la-----~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~-fk~G~~v~~~~g~~~ 96 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILA-----KKHLETKFIKVNAEKAPFLVEKLNIKVLPTVIL-FKNGKTVDRIVGFEE 96 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHH-----HHcCCCEEEEEEcccCHHHHHHCCCccCCEEEE-EECCEEEEEEECccc
Confidence 56688999999999999999999974 2345789999999999999999996 6999985 358875532
Q ss_pred ----cCCCHHHHHHHHH
Q 031531 120 ----ACINRFRIEAWLS 132 (158)
Q Consensus 120 ----grfd~d~L~~~L~ 132 (158)
..|+.+.|+++|.
T Consensus 97 ~~~~~~~~~~~~e~~~~ 113 (113)
T cd02989 97 LGGKDDFSTETLEKRLA 113 (113)
T ss_pred cCCCCCCCHHHHHHHhC
Confidence 4577788887763
No 46
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.8e-08 Score=73.57 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=51.5
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH---HHHHh----cC-CccceEEEeccCCeE
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKS----YQ-YEIPVLARVLSDGTE 116 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~---el~ek----yg-~~VPVL~i~~idGe~ 116 (158)
.....|++|++++||+|+.+|++|.+. ++++..+.+|+++ ++.+. -| ..||.++ ++|+.
T Consensus 11 i~~~~VVifSKs~C~~c~~~k~ll~~~----------~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vF---I~Gk~ 77 (104)
T KOG1752|consen 11 ISENPVVIFSKSSCPYCHRAKELLSDL----------GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVF---IGGKF 77 (104)
T ss_pred hhcCCEEEEECCcCchHHHHHHHHHhC----------CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEE---ECCEE
Confidence 345679999999999999999999986 6777777777544 33222 23 4799999 89985
Q ss_pred EEecCCCHHHHHHHHHhc
Q 031531 117 VLMACINRFRIEAWLSQM 134 (158)
Q Consensus 117 i~~grfd~d~L~~~L~~~ 134 (158)
+ | ..++|.++-..-
T Consensus 78 i--G--G~~dl~~lh~~G 91 (104)
T KOG1752|consen 78 I--G--GASDLMALHKSG 91 (104)
T ss_pred E--c--CHHHHHHHHHcC
Confidence 5 4 235555554443
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.73 E-value=1e-07 Score=71.80 Aligned_cols=79 Identities=11% Similarity=0.264 Sum_probs=59.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH-----------HHHHhcCC-----ccceEEEe
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-----------EWEKSYQY-----EIPVLARV 110 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~-----------el~ekyg~-----~VPVL~i~ 110 (158)
..-+..|+++|||+|+++.+.|+++. +..+.++-.+|++.|+ +++++|+. .+|.++.-
T Consensus 24 ~~~iv~f~~~~Cp~C~~~~P~l~~~~------~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~ 97 (122)
T TIGR01295 24 ETATFFIGRKTCPYCRKFSGTLSGVV------AQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHI 97 (122)
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHH------HhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEE
Confidence 34588999999999999999999984 3357889999999653 45566653 39999853
Q ss_pred ccCCeEEE--ec-CCCHHHHHHHHH
Q 031531 111 LSDGTEVL--MA-CINRFRIEAWLS 132 (158)
Q Consensus 111 ~idGe~i~--~g-rfd~d~L~~~L~ 132 (158)
.||+++. .| .-+.++|.+++.
T Consensus 98 -k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 98 -TDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred -eCCeEEEEEeCCCCCHHHHHHHhh
Confidence 7898654 34 345888888774
No 48
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.72 E-value=1.5e-07 Score=67.60 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=64.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--EecCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACI 122 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~grf 122 (158)
..+-+..|+.+||+.|....+.++++.. ......+.+-.+|++ ++++.++|+. .+|.+++- .||+.. ..| .
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~---~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~G-~ 90 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKN---ELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY-KNGELVAVIRG-A 90 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHH---HcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE-ECCEEEEEEec-C
Confidence 4566889999999999999999988731 122235789999999 7888999996 69987754 688754 345 7
Q ss_pred CHHHHHHHHHhc
Q 031531 123 NRFRIEAWLSQM 134 (158)
Q Consensus 123 d~d~L~~~L~~~ 134 (158)
+++.|+++|++.
T Consensus 91 ~~~~~~~~i~~~ 102 (102)
T cd02948 91 NAPLLNKTITEL 102 (102)
T ss_pred ChHHHHHHHhhC
Confidence 999999999763
No 49
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.72 E-value=1.8e-07 Score=65.94 Aligned_cols=81 Identities=12% Similarity=0.231 Sum_probs=65.5
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeE-EEecCCCHHH
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE-VLMACINRFR 126 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~-i~~grfd~d~ 126 (158)
.+..|..+||+.|.+..+.++++.. .....++.+-.+|.++++++.++|+. .+|.++.- .+|+. ...|..+.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~---~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~G~~~~~~ 94 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFAD---WSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA-KDGVFRRYQGPRDKED 94 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHH---hhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe-CCCCEEEecCCCCHHH
Confidence 5899999999999999999998742 12234689999999999999999996 69999864 67864 2357678899
Q ss_pred HHHHHHh
Q 031531 127 IEAWLSQ 133 (158)
Q Consensus 127 L~~~L~~ 133 (158)
|.+++++
T Consensus 95 l~~~i~~ 101 (101)
T cd02994 95 LISFIEE 101 (101)
T ss_pred HHHHHhC
Confidence 9998864
No 50
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.65 E-value=1.1e-07 Score=72.04 Aligned_cols=77 Identities=14% Similarity=0.256 Sum_probs=59.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCC-cceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEE--ecC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL--MAC 121 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~-I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~--~gr 121 (158)
..+-|..|+.+||+.|...++.|+++. .+..+ +.|-.||+++++++.++|+. .+|.++.- .||+.+. .|.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la-----~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~f-k~G~~v~~~~G~ 87 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIA-----EDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFF-FRNKHMKIDLGT 87 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHH-----HHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEE-ECCEEEEEEcCC
Confidence 345688899999999999999999984 22233 68999999999999999996 69999853 6887543 355
Q ss_pred CCHHHHH
Q 031531 122 INRFRIE 128 (158)
Q Consensus 122 fd~d~L~ 128 (158)
.|.++|.
T Consensus 88 ~~~~~~~ 94 (114)
T cd02954 88 GNNNKIN 94 (114)
T ss_pred CCCceEE
Confidence 5555443
No 51
>PRK10996 thioredoxin 2; Provisional
Probab=98.65 E-value=3.4e-07 Score=69.87 Aligned_cols=84 Identities=14% Similarity=0.325 Sum_probs=67.6
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--EecCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACI 122 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~grf 122 (158)
...-+..|+++||+.|......|+++.. ....++.+-.+|+++++++.++|+. ++|.+++- .+|+.+ ..|..
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~----~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~-~~G~~v~~~~G~~ 126 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAA----ERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF-KNGQVVDMLNGAV 126 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHH----HhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE-ECCEEEEEEcCCC
Confidence 3556889999999999999999988742 1123688999999999999999996 69998853 588854 35668
Q ss_pred CHHHHHHHHHhc
Q 031531 123 NRFRIEAWLSQM 134 (158)
Q Consensus 123 d~d~L~~~L~~~ 134 (158)
++++|+++|+++
T Consensus 127 ~~e~l~~~l~~~ 138 (139)
T PRK10996 127 PKAPFDSWLNEA 138 (139)
T ss_pred CHHHHHHHHHHh
Confidence 889999999864
No 52
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.65 E-value=4.8e-07 Score=65.21 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=65.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH---HHHHhcCC-ccceEEEeccCCeEEE-ec
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQY-EIPVLARVLSDGTEVL-MA 120 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~---el~ekyg~-~VPVL~i~~idGe~i~-~g 120 (158)
..+-+..|+.+||+.|....+.|+++. .+..++.|-.+|+++++ ++.++|+. .+|+++.- .||+... +.
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la-----~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~-~~G~~v~~~~ 88 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLS-----RTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY-KDGEKIHEEE 88 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHH-----HHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE-eCCeEEEEEe
Confidence 566789999999999999999999874 22357899999999885 68889996 69987743 6887542 33
Q ss_pred CCCHHHHHHHHHhcC
Q 031531 121 CINRFRIEAWLSQMS 135 (158)
Q Consensus 121 rfd~d~L~~~L~~~~ 135 (158)
+.++++|++.+...|
T Consensus 89 G~~~~~l~~~~~~~~ 103 (103)
T cd02985 89 GIGPDELIGDVLYYG 103 (103)
T ss_pred CCCHHHHHHHHHhcC
Confidence 489999998876543
No 53
>PRK09381 trxA thioredoxin; Provisional
Probab=98.65 E-value=4.3e-07 Score=64.99 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=67.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--EecCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACI 122 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~grf 122 (158)
..+-+..|..+||+.|...+..++++.. .-..++.+-.+|++.++++..+|+. .+|.+++- .+|+.. ..|..
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~----~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~ 95 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIAD----EYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGAL 95 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHH----HhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE-eCCeEEEEecCCC
Confidence 4567889999999999999999988742 1123588999999999999999996 69988753 588755 34667
Q ss_pred CHHHHHHHHHhc
Q 031531 123 NRFRIEAWLSQM 134 (158)
Q Consensus 123 d~d~L~~~L~~~ 134 (158)
+.++|++++++.
T Consensus 96 ~~~~l~~~i~~~ 107 (109)
T PRK09381 96 SKGQLKEFLDAN 107 (109)
T ss_pred CHHHHHHHHHHh
Confidence 899999999875
No 54
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.63 E-value=2.9e-07 Score=63.73 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=65.6
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCe--EEEecC
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGT--EVLMAC 121 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe--~i~~gr 121 (158)
.....++.|+.+||+.|.+.++.+++... ......++.+-.+|+++++++.++|+. .+|.++.- .+|+ ..+.|.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~-~~~~~~~~~~g~ 88 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAK--ELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFF-PKGKKPVDYEGG 88 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHH--HhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEe-cCCCcceeecCC
Confidence 35567999999999999999998887632 111112589999999999999999996 69998643 3443 234566
Q ss_pred CCHHHHHHHHHhc
Q 031531 122 INRFRIEAWLSQM 134 (158)
Q Consensus 122 fd~d~L~~~L~~~ 134 (158)
.+.++|.+++++.
T Consensus 89 ~~~~~l~~~i~~~ 101 (102)
T TIGR01126 89 RDLEAIVEFVNEK 101 (102)
T ss_pred CCHHHHHHHHHhc
Confidence 7889999999864
No 55
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.62 E-value=3.8e-07 Score=63.39 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=64.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEE-ecCCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL-MACIN 123 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~-~grfd 123 (158)
...-+..|.++||+.|..+++.|+++.. .. ..++.+-.+|+++++++.++|+. .+|.+++- .+|+.+. ..+++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~---~~-~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~ 88 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAK---EA-FPSVLFLSIEAEELPEISEKFEITAVPTFVFF-RNGTIVDRVSGAD 88 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHH---Hh-CCceEEEEEccccCHHHHHhcCCccccEEEEE-ECCEEEEEEeCCC
Confidence 4566889999999999999999998741 11 34789999999999999999996 69988754 6888654 34489
Q ss_pred HHHHHHHH
Q 031531 124 RFRIEAWL 131 (158)
Q Consensus 124 ~d~L~~~L 131 (158)
+++|.+.+
T Consensus 89 ~~~l~~~~ 96 (97)
T cd02984 89 PKELAKKV 96 (97)
T ss_pred HHHHHHhh
Confidence 99998876
No 56
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.7e-07 Score=81.60 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=72.7
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--Eec
Q 031531 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMA 120 (158)
Q Consensus 44 ~~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~g 120 (158)
+...+-++.|+.|||+.|.++...|+++.. .-...|.+-++|+|+++.....||. .||+++. +.||+.+ |.|
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~----~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~a-f~dGqpVdgF~G 115 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAA----EYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYA-FKDGQPVDGFQG 115 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHH----HhCCceEEEEecCCcchhHHHHhCcCcCCeEEE-eeCCcCccccCC
Confidence 344577999999999999999999999852 2234789999999999999999996 6999984 4899865 567
Q ss_pred CCCHHHHHHHHHhcCC
Q 031531 121 CINRFRIEAWLSQMSL 136 (158)
Q Consensus 121 rfd~d~L~~~L~~~~l 136 (158)
-.++++|++||.+..-
T Consensus 116 ~qPesqlr~~ld~~~~ 131 (304)
T COG3118 116 AQPESQLRQFLDKVLP 131 (304)
T ss_pred CCcHHHHHHHHHHhcC
Confidence 6777899999987654
No 57
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.60 E-value=5.3e-07 Score=61.96 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=65.0
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--EecCCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACIN 123 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~grfd 123 (158)
..-+..|..+||+.|...++.|+++.. .-..++.+-.+|+++++++.++|+. .+|.++.- .+|+.. ..|..+
T Consensus 15 ~~vvi~f~~~~C~~C~~~~~~l~~~~~----~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~-~~g~~~~~~~g~~~ 89 (101)
T TIGR01068 15 KPVLVDFWAPWCGPCKMIAPILEELAK----EYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLF-KNGKEVDRSVGALP 89 (101)
T ss_pred CcEEEEEECCCCHHHHHhCHHHHHHHH----HhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEE-eCCcEeeeecCCCC
Confidence 456888899999999999999988731 1123599999999999999999996 69998853 477643 356677
Q ss_pred HHHHHHHHHhc
Q 031531 124 RFRIEAWLSQM 134 (158)
Q Consensus 124 ~d~L~~~L~~~ 134 (158)
.++|.++|++.
T Consensus 90 ~~~l~~~l~~~ 100 (101)
T TIGR01068 90 KAALKQLINKN 100 (101)
T ss_pred HHHHHHHHHhh
Confidence 79999999763
No 58
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.60 E-value=2.7e-07 Score=62.49 Aligned_cols=67 Identities=21% Similarity=0.382 Sum_probs=50.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH--HHHHhcC-CccceEEEeccC----CeEEEecC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSYQ-YEIPVLARVLSD----GTEVLMAC 121 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~--el~ekyg-~~VPVL~i~~id----Ge~i~~gr 121 (158)
+++||+.++|++|.+++.+|+.. +++|+.++++... ++ +.-+ ..||+++ .+ |+.+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~----------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~---~~~~~~~~~l---- 62 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYH----------GIPYEVVEVNPVSRKEI-KWSSYKKVPILR---VESGGDGQQL---- 62 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC----------CCceEEEECCchhHHHH-HHhCCCccCEEE---ECCCCCccEE----
Confidence 58999999999999999999997 8999999986422 33 2223 4699998 34 5444
Q ss_pred CCHHHHHHHHHh
Q 031531 122 INRFRIEAWLSQ 133 (158)
Q Consensus 122 fd~d~L~~~L~~ 133 (158)
++-..|.++|++
T Consensus 63 ~eS~~I~~yL~~ 74 (77)
T cd03040 63 VDSSVIISTLKT 74 (77)
T ss_pred EcHHHHHHHHHH
Confidence 355888888865
No 59
>PTZ00051 thioredoxin; Provisional
Probab=98.57 E-value=5e-07 Score=63.06 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEE-ecCCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL-MACIN 123 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~-~grfd 123 (158)
...-+..|+.+||+.|......|+++. .+..++.+-.+|+++++++.++|+. .+|++++- .+|+... ..+.+
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~-----~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~G~~ 91 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECS-----KEYTKMVFVKVDVDELSEVAEKENITSMPTFKVF-KNGSVVDTLLGAN 91 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHH-----HHcCCcEEEEEECcchHHHHHHCCCceeeEEEEE-eCCeEEEEEeCCC
Confidence 346688999999999999999999874 2334689999999999999999996 69998753 6887652 33378
Q ss_pred HHHHHH
Q 031531 124 RFRIEA 129 (158)
Q Consensus 124 ~d~L~~ 129 (158)
+++|++
T Consensus 92 ~~~~~~ 97 (98)
T PTZ00051 92 DEALKQ 97 (98)
T ss_pred HHHhhc
Confidence 888875
No 60
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.56 E-value=3.6e-07 Score=82.53 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=71.1
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEecCCCH
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~grfd~ 124 (158)
+..+|++|.+++||+|..+.+.+.++. ....+|+.+.||..+.|++.++|++ .||.++ +||+.++.|..+.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a-----~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~---i~~~~~~~g~~~~ 187 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMA-----VLNPNITHTMIDGALFQDEVEARNIMAVPTVF---LNGEEFGQGRMTL 187 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHH-----HhCCCceEEEEEchhCHhHHHhcCCcccCEEE---ECCcEEEecCCCH
Confidence 356799999999999999999999885 2345899999999999999999996 699999 7999888898999
Q ss_pred HHHHHHHHhc
Q 031531 125 FRIEAWLSQM 134 (158)
Q Consensus 125 d~L~~~L~~~ 134 (158)
+++.+.+.+.
T Consensus 188 ~~~~~~~~~~ 197 (517)
T PRK15317 188 EEILAKLDTG 197 (517)
T ss_pred HHHHHHHhcc
Confidence 9999998753
No 61
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.55 E-value=8.5e-07 Score=64.75 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=62.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEe-----
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM----- 119 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~----- 119 (158)
..+-+..|+.|||+.|...+..|+++. .+..++.|-.+|++++ ++.++|+. .+|.++. ..+|+....
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la-----~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~-f~~G~~v~~~~G~~ 96 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELA-----AKYPETKFVKINAEKA-FLVNYLDIKVLPTLLV-YKNGELIDNIVGFE 96 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHH-----HHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEE-EECCEEEEEEecHH
Confidence 356688899999999999999999874 2345688999999988 99999997 7999885 368875431
Q ss_pred ----cCCCHHHHHHHH
Q 031531 120 ----ACINRFRIEAWL 131 (158)
Q Consensus 120 ----grfd~d~L~~~L 131 (158)
-.|+.+.|+++|
T Consensus 97 ~~~~~~~~~~~l~~~l 112 (113)
T cd02957 97 ELGGDDFTTEDLEKFL 112 (113)
T ss_pred HhCCCCCCHHHHHHHh
Confidence 236777888776
No 62
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.54 E-value=2.7e-07 Score=65.62 Aligned_cols=82 Identities=16% Similarity=0.071 Sum_probs=59.1
Q ss_pred CceEEEEeCCCCCchHHHHHHH---HHhhccCCCCCCCCcceEEEEcCC----CHHHHHhcCC-ccceEEEecc-CCeEE
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKL---QAAFLLSGPDSLHDVDLQVRDITT----NPEWEKSYQY-EIPVLARVLS-DGTEV 117 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L---~~~~~~~~~~~~~~I~~eeIDId~----d~el~ekyg~-~VPVL~i~~i-dGe~i 117 (158)
.+-+..|+.+||+.|.+.+..+ ++... ... .++.+-.+|+++ ++++.++|+. .+|++++-.. +|+..
T Consensus 12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~---~~~-~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQA---ALK-KDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred CeEEEEEEcchhHHHHHHHHHhcCCHHHHH---HHh-CCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 4568899999999999998766 22210 011 268888999987 4578888986 6999986533 56643
Q ss_pred --EecCCCHHHHHHHHH
Q 031531 118 --LMACINRFRIEAWLS 132 (158)
Q Consensus 118 --~~grfd~d~L~~~L~ 132 (158)
..|..+.++|.++|+
T Consensus 88 ~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 88 LRLPGFLTADEFLEALE 104 (104)
T ss_pred cccccccCHHHHHHHhC
Confidence 357788999998874
No 63
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.54 E-value=8.6e-07 Score=71.77 Aligned_cols=83 Identities=14% Similarity=0.369 Sum_probs=62.4
Q ss_pred CCceEEEEeC---CCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CCHHHHHhcCC-ccceEEEeccCCeEE--
Q 031531 46 STRKLVLYSK---PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQY-EIPVLARVLSDGTEV-- 117 (158)
Q Consensus 46 ~~~~VtLYTk---pgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d~el~ekyg~-~VPVL~i~~idGe~i-- 117 (158)
+...+.+|+. +||+.|..++++|+++. ....++++..+|++ +++++.++|+. .+|++++- .||+..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la-----~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f-~~g~~~~~ 92 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELS-----EVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIIL-EEGKDGGI 92 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHH-----hhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEE-eCCeeeEE
Confidence 4566888988 99999999999999984 22335666666666 88999999996 69999852 466653
Q ss_pred -EecCCCHHHHHHHHHhc
Q 031531 118 -LMACINRFRIEAWLSQM 134 (158)
Q Consensus 118 -~~grfd~d~L~~~L~~~ 134 (158)
+.|..+.+++.++|++.
T Consensus 93 ~~~G~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 93 RYTGIPAGYEFAALIEDI 110 (215)
T ss_pred EEeecCCHHHHHHHHHHH
Confidence 34666778887777655
No 64
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.53 E-value=4.6e-07 Score=57.31 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=47.7
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH----HHHHhcCC-ccceEEEeccCCeEEEecCCCHH
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQY-EIPVLARVLSDGTEVLMACINRF 125 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~----el~ekyg~-~VPVL~i~~idGe~i~~grfd~d 125 (158)
+||+.++|++|.+++.+|+.. +++|+.++++.++ ++.+..+. .+|++. .+|..+ .+..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~---~~~~~~----~es~ 64 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK----------GLPYELVPVDLGEGEQEEFLALNPLGKVPVLE---DGGLVL----TESL 64 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc----------CCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEE---ECCEEE----EcHH
Confidence 799999999999999999987 7888888887433 13444443 699999 677655 3446
Q ss_pred HHHHHH
Q 031531 126 RIEAWL 131 (158)
Q Consensus 126 ~L~~~L 131 (158)
.|.++|
T Consensus 65 ~I~~yl 70 (71)
T cd00570 65 AILEYL 70 (71)
T ss_pred HHHHHh
Confidence 776665
No 65
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.52 E-value=5.3e-07 Score=68.16 Aligned_cols=97 Identities=10% Similarity=0.062 Sum_probs=70.4
Q ss_pred cccceeccccccCcCCCCCCCCceEEEEeCCC--CCchHHHHHHHHHhhccCCCCCCC-CcceEEEEcCCCHHHHHhcCC
Q 031531 26 RSRWGFSPLAYSSSSSSSSSSTRKLVLYSKPG--CCLCDGLKEKLQAAFLLSGPDSLH-DVDLQVRDITTNPEWEKSYQY 102 (158)
Q Consensus 26 ~~~~~~~~~~~~~~~s~~~~~~~~VtLYTkpg--C~lC~~aK~~L~~~~~~~~~~~~~-~I~~eeIDId~d~el~ekyg~ 102 (158)
..++++-.+...+--..-......|..|+++| ||.|...+..|+++. .++. .+.+-.+|+++++++.++|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela-----~e~~~~v~f~kVdid~~~~la~~f~V 81 (111)
T cd02965 7 QTRHGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELL-----KAFPGRFRAAVVGRADEQALAARFGV 81 (111)
T ss_pred HHhcCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHH-----HHCCCcEEEEEEECCCCHHHHHHcCC
Confidence 33455555555544222245577899999996 999999999999984 2222 368899999999999999997
Q ss_pred -ccceEEEeccCCeEEE--ecCCCHHHHH
Q 031531 103 -EIPVLARVLSDGTEVL--MACINRFRIE 128 (158)
Q Consensus 103 -~VPVL~i~~idGe~i~--~grfd~d~L~ 128 (158)
+||.++. ..||+.+. .|..+.+++.
T Consensus 82 ~sIPTli~-fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 82 LRTPALLF-FRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CcCCEEEE-EECCEEEEEEeCccCHHHHh
Confidence 5999984 46898653 4656666664
No 66
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.3e-06 Score=65.07 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=66.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEE--ecCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL--MACI 122 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~--~grf 122 (158)
...-|+.|+.+||+.|...+..++++. .++.++.|-.+|+|+++++.++++. .+|+++.- .+|+.+. .| -
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La-----~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~-k~g~~~~~~vG-a 93 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLA-----EKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFY-KGGEEVDEVVG-A 93 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHH-----HHCCCCEEEEEecccCHhHHHhcCceEeeEEEEE-ECCEEEEEEec-C
Confidence 345577899999999999999999985 4566799999999999999999997 58998853 6787543 45 6
Q ss_pred CHHHHHHHHHhc
Q 031531 123 NRFRIEAWLSQM 134 (158)
Q Consensus 123 d~d~L~~~L~~~ 134 (158)
++++|++.+...
T Consensus 94 ~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 94 NKAELEKKIAKH 105 (106)
T ss_pred CHHHHHHHHHhc
Confidence 778998888764
No 67
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.48 E-value=7.9e-07 Score=80.45 Aligned_cols=81 Identities=11% Similarity=0.100 Sum_probs=70.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEecCCCH
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~grfd~ 124 (158)
+..+|++|.++.||+|..+.+.+.++. ..+.+|+.+.+|..+.|++.++|++ .||.++ +||+..+.|..+.
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a-----~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~---i~~~~~~~g~~~~ 188 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMA-----LLNPNISHTMIDGALFQDEVEALGIQGVPAVF---LNGEEFHNGRMDL 188 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHH-----HhCCCceEEEEEchhCHHHHHhcCCcccCEEE---ECCcEEEecCCCH
Confidence 356899999999999999999998885 2345899999999999999999996 699999 7999888898999
Q ss_pred HHHHHHHHhc
Q 031531 125 FRIEAWLSQM 134 (158)
Q Consensus 125 d~L~~~L~~~ 134 (158)
+++.+.+.+.
T Consensus 189 ~~~~~~l~~~ 198 (515)
T TIGR03140 189 AELLEKLEET 198 (515)
T ss_pred HHHHHHHhhc
Confidence 9998887654
No 68
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.48 E-value=1.1e-06 Score=66.86 Aligned_cols=85 Identities=8% Similarity=-0.028 Sum_probs=65.2
Q ss_pred CceEEEEeCCCCCc--hH--HHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEE-ec
Q 031531 47 TRKLVLYSKPGCCL--CD--GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL-MA 120 (158)
Q Consensus 47 ~~~VtLYTkpgC~l--C~--~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~-~g 120 (158)
.+-|..|..+||+. |. ...+.|++... +.....++.+-.+|+++++++.++||. ++|+++. ..||+.+. .|
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa--~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~l-fk~G~~v~~~G 104 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAA--QVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYV-FKDDEVIEYDG 104 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHH--HHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEE-EECCEEEEeeC
Confidence 45688889999987 99 66766666531 111235799999999999999999997 6999984 46898554 47
Q ss_pred CCCHHHHHHHHHhc
Q 031531 121 CINRFRIEAWLSQM 134 (158)
Q Consensus 121 rfd~d~L~~~L~~~ 134 (158)
..++++|.++|++.
T Consensus 105 ~~~~~~l~~~l~~~ 118 (120)
T cd03065 105 EFAADTLVEFLLDL 118 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 67999999999863
No 69
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.47 E-value=1.5e-06 Score=61.58 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=60.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCC-eE--EEecCCC
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDG-TE--VLMACIN 123 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idG-e~--i~~grfd 123 (158)
+-+..|..+||+.|...++.++++.. .-...+.+-.+|.++++++.++|+. .+|.++.- .+| +. ...|..+
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~----~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~~G~~~ 95 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAAR----ALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLY-PGNASKYHSYNGWHR 95 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHH----HhcCCcEEEEEECCchHHHHHHcCCCcccEEEEE-cCCCCCceEccCCCC
Confidence 67889999999999999999998742 1123588999999999999999996 69998854 455 43 2345455
Q ss_pred -HHHHHHHH
Q 031531 124 -RFRIEAWL 131 (158)
Q Consensus 124 -~d~L~~~L 131 (158)
.++|.++|
T Consensus 96 ~~~~l~~~i 104 (104)
T cd03004 96 DADSILEFI 104 (104)
T ss_pred CHHHHHhhC
Confidence 88887764
No 70
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.47 E-value=7.9e-07 Score=60.25 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=60.0
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCC-CCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCC-eE--EEecCC
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDG-TE--VLMACI 122 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~-~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idG-e~--i~~grf 122 (158)
+.+.+|+++||+.|..+.+.+++... ... ..++.+-.+|.++++++.++|+. .+|.++.- .+| .. .+.|..
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~-~~~~~~~~~~~g~~ 92 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAK---ELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLF-PNGSKEPVKYEGPR 92 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHH---HhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEE-cCCCcccccCCCCc
Confidence 67999999999999999999988631 111 35789999999999999999996 68998853 233 22 224556
Q ss_pred CHHHHHHHH
Q 031531 123 NRFRIEAWL 131 (158)
Q Consensus 123 d~d~L~~~L 131 (158)
+.+++.+++
T Consensus 93 ~~~~i~~~~ 101 (101)
T cd02961 93 TLESLVEFI 101 (101)
T ss_pred CHHHHHhhC
Confidence 677777653
No 71
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.46 E-value=1.4e-06 Score=57.87 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=50.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC---CHHHHHhcC-CccceEEEeccCCeEEEecCCCHH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQ-YEIPVLARVLSDGTEVLMACINRF 125 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~---d~el~ekyg-~~VPVL~i~~idGe~i~~grfd~d 125 (158)
++||+.++|++|.+++..|+.. |++|+.++++. .+++.+... ..||++. .+|..+ ++..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~----------gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~---~~~~~l----~es~ 63 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEK----------GVSVEIIDVDPDNPPEDLAELNPYGTVPTLV---DRDLVL----YESR 63 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHc----------CCccEEEEcCCCCCCHHHHhhCCCCCCCEEE---ECCEEE----EcHH
Confidence 3799999999999999999987 78888877762 234444333 3699998 566544 4568
Q ss_pred HHHHHHHhc
Q 031531 126 RIEAWLSQM 134 (158)
Q Consensus 126 ~L~~~L~~~ 134 (158)
.|.++|++.
T Consensus 64 aI~~yL~~~ 72 (73)
T cd03059 64 IIMEYLDER 72 (73)
T ss_pred HHHHHHHhh
Confidence 888888753
No 72
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.42 E-value=2.1e-06 Score=62.01 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=61.9
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC-CCHHHHHhcCC-ccceEEEeccCCe-EEEecCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-TNPEWEKSYQY-EIPVLARVLSDGT-EVLMACI 122 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId-~d~el~ekyg~-~VPVL~i~~idGe-~i~~grf 122 (158)
.++-++.|+.+||+.|......++++. ....++.+-.+|.+ +++++.++|+. ++|++++- .+|. ....|..
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la-----~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf-~~g~~~~~~G~~ 91 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALS-----SMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLF-NSTPRVRYNGTR 91 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHH-----HHhccCceEEEECCCCCHHHHHhcCCeecCEEEEE-cCCceeEecCCC
Confidence 456789999999999999999999984 23346888899998 78999999996 69988853 3453 2345767
Q ss_pred CHHHHHHHH
Q 031531 123 NRFRIEAWL 131 (158)
Q Consensus 123 d~d~L~~~L 131 (158)
+.++|.+++
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 788887763
No 73
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.41 E-value=2.3e-07 Score=68.69 Aligned_cols=36 Identities=33% Similarity=0.588 Sum_probs=33.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE 95 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e 95 (158)
|++|+.++|+.|.+|+++|++. +++|+++|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~----------~i~~~~idi~~~~~ 36 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH----------GVDYTAIDIVEEPP 36 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc----------CCceEEecccCCcc
Confidence 5899999999999999999997 89999999997763
No 74
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.40 E-value=1.3e-06 Score=67.11 Aligned_cols=35 Identities=20% Similarity=0.508 Sum_probs=32.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
|++|+.|+|+.|.+|+++|++. +++|+++|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~----------~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH----------QLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc----------CCCeEEEECCCCC
Confidence 8999999999999999999997 8999999998654
No 75
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.40 E-value=2.8e-06 Score=60.68 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=64.2
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCC-CCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeE-EEecCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE-VLMACI 122 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~-~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~-i~~grf 122 (158)
..+-+..|.++||+.|.+....|+++.. .... ..++.+..+|+++++++.++|+. ++|.++.- .+|.. ...|..
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~--~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~-~~~~~~~~~G~~ 91 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGA--ELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLL-KGDLAYNYRGPR 91 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHH--HHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEE-cCCCceeecCCC
Confidence 4567899999999999999999988632 0011 12478888999999999999996 69999853 34433 234668
Q ss_pred CHHHHHHHHHhc
Q 031531 123 NRFRIEAWLSQM 134 (158)
Q Consensus 123 d~d~L~~~L~~~ 134 (158)
+.++|.+++++.
T Consensus 92 ~~~~l~~~~~~~ 103 (104)
T cd03000 92 TKDDIVEFANRV 103 (104)
T ss_pred CHHHHHHHHHhh
Confidence 889999998764
No 76
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.39 E-value=2.5e-06 Score=60.31 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=60.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--EecCCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACIN 123 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~grfd 123 (158)
..-+..|..+||+.|.+++..++++.. .. ...+.+-.+|+++++++.++++. .+|.++.- .+|+.. ..|..+
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~---~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~G~~~ 93 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAK---EM-DGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVF-PSGMNPEKYYGDRS 93 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHH---Hh-cCceEEEEEeCCccHHHHHHcCCCccCEEEEE-cCCCCcccCCCCCC
Confidence 456889999999999999999988742 11 22478999999999999999996 69998743 577633 345567
Q ss_pred HHHHHHH
Q 031531 124 RFRIEAW 130 (158)
Q Consensus 124 ~d~L~~~ 130 (158)
.++|.++
T Consensus 94 ~~~l~~f 100 (101)
T cd03003 94 KESLVKF 100 (101)
T ss_pred HHHHHhh
Confidence 7777654
No 77
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.39 E-value=3e-06 Score=59.75 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=50.4
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC---CHHHHHhcCC-ccceEEEeccC-CeEEEe
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQY-EIPVLARVLSD-GTEVLM 119 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~---d~el~ekyg~-~VPVL~i~~id-Ge~i~~ 119 (158)
....+++||+.+.|++|.+++..|+.. |++|+.++++. ++++.+.... .||++. .| |..+
T Consensus 14 ~~~~~~~Ly~~~~sp~~~kv~~~L~~~----------gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~---~~~g~~l-- 78 (89)
T cd03055 14 PVPGIIRLYSMRFCPYAQRARLVLAAK----------NIPHEVININLKDKPDWFLEKNPQGKVPALE---IDEGKVV-- 78 (89)
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHc----------CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEE---ECCCCEE--
Confidence 444558999999999999999999997 78888888763 2334444333 699999 55 6554
Q ss_pred cCCCHHHHHHHH
Q 031531 120 ACINRFRIEAWL 131 (158)
Q Consensus 120 grfd~d~L~~~L 131 (158)
.+-..|.++|
T Consensus 79 --~eS~aI~~yL 88 (89)
T cd03055 79 --YESLIICEYL 88 (89)
T ss_pred --ECHHHHHHhh
Confidence 2346776665
No 78
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.38 E-value=2.9e-06 Score=67.64 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=65.5
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEE-------
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL------- 118 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~------- 118 (158)
..-|..|+++||+.|....+.|+++. ..+..+.|-.||++++ ++..+|+. .+|++++ ..||+.+.
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA-----~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlll-yk~G~~v~~~vG~~~ 156 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLA-----AEYPAVKFCKIRASAT-GASDEFDTDALPALLV-YKGGELIGNFVRVTE 156 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHH-----HHCCCeEEEEEeccch-hhHHhCCCCCCCEEEE-EECCEEEEEEechHH
Confidence 36688899999999999999999984 2345789999999987 88899996 6999885 36887542
Q ss_pred --ecCCCHHHHHHHHHhcC
Q 031531 119 --MACINRFRIEAWLSQMS 135 (158)
Q Consensus 119 --~grfd~d~L~~~L~~~~ 135 (158)
-..|+.+.|+.+|.+.|
T Consensus 157 ~~g~~f~~~~le~~L~~~g 175 (175)
T cd02987 157 DLGEDFDAEDLESFLVEYG 175 (175)
T ss_pred hcCCCCCHHHHHHHHHhcC
Confidence 13588899999998754
No 79
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.37 E-value=2.3e-06 Score=59.67 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=60.8
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC--CHHHHHhcCC-ccceEEEeccCCeEE--EecCC
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQY-EIPVLARVLSDGTEV--LMACI 122 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~--d~el~ekyg~-~VPVL~i~~idGe~i--~~grf 122 (158)
.-+..|+.+||+.|....+.+.++.. .......+.+-.+|+++ ++++.++|+. .+|.++.- .+|+.. ..|..
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~--~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~ 95 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAAT--ELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYF-ENGKFVEKYEGER 95 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHH--HHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEE-eCCCeeEEeCCCC
Confidence 66899999999999999988877632 11112357888899998 8889999997 79988743 577633 35667
Q ss_pred CHHHHHHHH
Q 031531 123 NRFRIEAWL 131 (158)
Q Consensus 123 d~d~L~~~L 131 (158)
++++|.+||
T Consensus 96 ~~~~l~~~l 104 (104)
T cd02997 96 TAEDIIEFM 104 (104)
T ss_pred CHHHHHhhC
Confidence 888887764
No 80
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.37 E-value=5.1e-06 Score=61.02 Aligned_cols=85 Identities=24% Similarity=0.349 Sum_probs=60.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHH---HhhccCCCCCCCCcceEEEEcCCC-------------HHHHHhcCC-ccceEEE
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQ---AAFLLSGPDSLHDVDLQVRDITTN-------------PEWEKSYQY-EIPVLAR 109 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~---~~~~~~~~~~~~~I~~eeIDId~d-------------~el~ekyg~-~VPVL~i 109 (158)
.+-+..|+.+||++|...++.+. .+.. .-..++.+..+|++++ .++..+|+. .+|.++.
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~ 90 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQA----YIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIF 90 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHH----HHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEE
Confidence 56788999999999999987663 2110 0013678889999875 578888985 6999886
Q ss_pred eccC-CeEE--EecCCCHHHHHHHHHhcC
Q 031531 110 VLSD-GTEV--LMACINRFRIEAWLSQMS 135 (158)
Q Consensus 110 ~~id-Ge~i--~~grfd~d~L~~~L~~~~ 135 (158)
-..+ |+.+ ..|..+++++.++|+...
T Consensus 91 ~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 91 LDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred EcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 4344 5643 356678899999987653
No 81
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.37 E-value=2.9e-07 Score=66.80 Aligned_cols=74 Identities=14% Similarity=0.231 Sum_probs=50.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH----HHHHh---cCCccceEEEeccCCeE------
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKS---YQYEIPVLARVLSDGTE------ 116 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~----el~ek---yg~~VPVL~i~~idGe~------ 116 (158)
|++|+.|+|+.|.+++++|++. +++|+++||.+++ ++.+- .+.++--++. ..|..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~----------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~--~~~~~~~~l~~ 68 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH----------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFN--TRGTPYRKLGL 68 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc----------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHh--cCCchHHHcCC
Confidence 5799999999999999999997 8999999998754 23332 2322333331 12210
Q ss_pred EEecCCCHHHHHHHHHhcC
Q 031531 117 VLMACINRFRIEAWLSQMS 135 (158)
Q Consensus 117 i~~grfd~d~L~~~L~~~~ 135 (158)
.....++.+++.++|.+..
T Consensus 69 ~~~~~ls~~e~~~~l~~~p 87 (105)
T cd02977 69 ADKDELSDEEALELMAEHP 87 (105)
T ss_pred ccccCCCHHHHHHHHHhCc
Confidence 0023478889989887764
No 82
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.36 E-value=1.7e-06 Score=60.27 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=61.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCC-CCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE--EecCCCH
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV--LMACINR 124 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~-~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i--~~grfd~ 124 (158)
.+..|..+||+.|...++.++++.. +... ..++.+-.+|.++++++.++|+. .+|.++.- .+|+.. ..|..+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~--~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~G~~~~ 95 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAK--KFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF-KDGEKVDKYKGTRDL 95 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHH--HHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE-eCCCeeeEeeCCCCH
Confidence 6889999999999999999987631 1011 23688999999999999999996 59998854 577643 4577788
Q ss_pred HHHHHHH
Q 031531 125 FRIEAWL 131 (158)
Q Consensus 125 d~L~~~L 131 (158)
++|.++|
T Consensus 96 ~~l~~~i 102 (102)
T cd03005 96 DSLKEFV 102 (102)
T ss_pred HHHHhhC
Confidence 8887764
No 83
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.35 E-value=1e-06 Score=62.91 Aligned_cols=86 Identities=17% Similarity=0.275 Sum_probs=55.9
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH--------------------HHHHhcCC-c
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--------------------EWEKSYQY-E 103 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~--------------------el~ekyg~-~ 103 (158)
...+.+.+|+.|||++|.++.+.+.+..++.. .-..++.+..+|++++. ++..+||. .
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVAR-YLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHC-EEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH-HhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 34677999999999999999888875321100 01125778888887543 36667886 6
Q ss_pred cceEEEeccCCeEE--EecCCCHHHHHHHH
Q 031531 104 IPVLARVLSDGTEV--LMACINRFRIEAWL 131 (158)
Q Consensus 104 VPVL~i~~idGe~i--~~grfd~d~L~~~L 131 (158)
.|+++....||+.+ ..|..++++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 89999633347754 36888999999886
No 84
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.35 E-value=4.3e-06 Score=64.19 Aligned_cols=85 Identities=13% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC--HHHHHhcCC-ccceEEEeccCCeEE--Eec
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN--PEWEKSYQY-EIPVLARVLSDGTEV--LMA 120 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d--~el~ekyg~-~VPVL~i~~idGe~i--~~g 120 (158)
..+-|..|+.+||+.|......|+++.. .-..++.|..+|++.+ +++.++|+. .+|.+++-..+|+.+ ..|
T Consensus 20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~----~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G 95 (142)
T cd02950 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQ----KYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIG 95 (142)
T ss_pred CCEEEEEEECCcCHHHHHhHHHHHHHHH----HhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeC
Confidence 3467889999999999999999988731 1113578899999865 478889996 699988632368755 357
Q ss_pred CCCHHHHHHHHHhc
Q 031531 121 CINRFRIEAWLSQM 134 (158)
Q Consensus 121 rfd~d~L~~~L~~~ 134 (158)
..+.++|+++|++.
T Consensus 96 ~~~~~~l~~~l~~l 109 (142)
T cd02950 96 LQPKQVLAQNLDAL 109 (142)
T ss_pred CCCHHHHHHHHHHH
Confidence 66788888888764
No 85
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.34 E-value=3.9e-06 Score=55.96 Aligned_cols=66 Identities=23% Similarity=0.428 Sum_probs=48.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CC----HHHHHhcCC-ccceEEEeccCCeEEEecCC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQY-EIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d----~el~ekyg~-~VPVL~i~~idGe~i~~grf 122 (158)
++||+.++|+.|.+++..|+.. |++|+.++|+ ++ +++.+.... .||++. .+|..+ +
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~----------gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~---~~~~~l----~ 63 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKAL----------GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV---DNGFVL----W 63 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHc----------CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE---ECCEEE----E
Confidence 4799999999999999999997 7888887776 22 344444333 699998 567655 3
Q ss_pred CHHHHHHHHH
Q 031531 123 NRFRIEAWLS 132 (158)
Q Consensus 123 d~d~L~~~L~ 132 (158)
+-..|.++|.
T Consensus 64 es~aI~~yL~ 73 (74)
T cd03045 64 ESHAILIYLV 73 (74)
T ss_pred cHHHHHHHHh
Confidence 4477777765
No 86
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.34 E-value=6.6e-06 Score=57.41 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=60.3
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeE---EEecCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE---VLMACI 122 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~---i~~grf 122 (158)
.+-+.+|..+||+.|.+.+..++++.. .-...+.+-.+|+++++++.++|+. ++|.+++- .+|+. .+.|..
T Consensus 19 ~~vlv~f~a~~C~~C~~~~~~~~~~~~----~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~-~~~~~~~~~~~g~~ 93 (103)
T cd03001 19 DVWLVEFYAPWCGHCKNLAPEWKKAAK----ALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF-GAGKNSPQDYQGGR 93 (103)
T ss_pred CcEEEEEECCCCHHHHHHhHHHHHHHH----HhcCCceEEEEECcchHHHHHHCCCCccCEEEEE-CCCCcceeecCCCC
Confidence 346888889999999999999988631 1123588999999999999999996 69988753 45522 234667
Q ss_pred CHHHHHHHH
Q 031531 123 NRFRIEAWL 131 (158)
Q Consensus 123 d~d~L~~~L 131 (158)
+.++|.+|+
T Consensus 94 ~~~~l~~~~ 102 (103)
T cd03001 94 TAKAIVSAA 102 (103)
T ss_pred CHHHHHHHh
Confidence 788888775
No 87
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.32 E-value=3.6e-06 Score=56.21 Aligned_cols=66 Identities=17% Similarity=0.300 Sum_probs=49.4
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH--HHHhcC-CccceEEEeccC-CeEEEecCCCHHH
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE--WEKSYQ-YEIPVLARVLSD-GTEVLMACINRFR 126 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e--l~ekyg-~~VPVL~i~~id-Ge~i~~grfd~d~ 126 (158)
+||+.++|++|.+++-.|... |++|+.++++.++. ..+..+ ..||+|+ .+ |..+ .+...
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~----------gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~---~~~~~~l----~es~a 64 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLK----------NIPVEQIILQNDDEATPIRMIGAKQVPILE---KDDGSFM----AESLD 64 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHc----------CCCeEEEECCCCchHHHHHhcCCCccCEEE---eCCCeEe----ehHHH
Confidence 589999999999999999987 89999998885432 223333 3699998 45 6444 35688
Q ss_pred HHHHHHh
Q 031531 127 IEAWLSQ 133 (158)
Q Consensus 127 L~~~L~~ 133 (158)
|.++|++
T Consensus 65 I~~yL~~ 71 (71)
T cd03037 65 IVAFIDE 71 (71)
T ss_pred HHHHHhC
Confidence 8888763
No 88
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.31 E-value=9e-07 Score=67.69 Aligned_cols=35 Identities=29% Similarity=0.656 Sum_probs=33.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
|++|+.|+|+.|.+|+++|++. |++|+++||.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~----------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH----------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc----------CCCcEEeeccCCh
Confidence 8999999999999999999997 8999999998765
No 89
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.30 E-value=8.6e-06 Score=63.91 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=50.9
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCC-cceEEEEcCCCHHHHHhcCCc-cceEEEeccCCe
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGT 115 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~-I~~eeIDId~d~el~ekyg~~-VPVL~i~~idGe 115 (158)
..+-|.-|+++||+.|....+.|+++. .+..+ ..+-.||||+++++.++|+.. +|.++.-..+|+
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la-----~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVA-----ETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHH-----HHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 456788999999999999999999984 12234 677999999999999999976 654442235776
No 90
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.30 E-value=4.2e-06 Score=58.15 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=60.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC-CHHHHHhcCC-ccceEEEeccCC-e--EEEecC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-NPEWEKSYQY-EIPVLARVLSDG-T--EVLMAC 121 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~-d~el~ekyg~-~VPVL~i~~idG-e--~i~~gr 121 (158)
.+.+..|+.+||+.|.+.++.++++.. ......++.+-.+|.++ ++++.++|+. .+|.++.- .+| + ....|.
T Consensus 19 ~~~~v~f~a~~C~~C~~~~~~~~~~~~--~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~-~~~~~~~~~~~g~ 95 (105)
T cd02998 19 KDVLVEFYAPWCGHCKNLAPEYEKLAA--VFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF-PKGSTEPVKYEGG 95 (105)
T ss_pred CcEEEEEECCCCHHHHhhChHHHHHHH--HhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE-eCCCCCccccCCc
Confidence 456889999999999999999988642 10113468899999999 8999999986 69998853 233 2 233466
Q ss_pred CCHHHHHHHH
Q 031531 122 INRFRIEAWL 131 (158)
Q Consensus 122 fd~d~L~~~L 131 (158)
.+.++|.+++
T Consensus 96 ~~~~~l~~~i 105 (105)
T cd02998 96 RDLEDLVKFV 105 (105)
T ss_pred cCHHHHHhhC
Confidence 8888887764
No 91
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.29 E-value=3.9e-06 Score=60.15 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=60.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhc-cCCCCC-CCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeE---EEec
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFL-LSGPDS-LHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE---VLMA 120 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~-~~~~~~-~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~---i~~g 120 (158)
..-++.|..|||+.|.+.++.++++.. +++... ...+.+-.+|.++++++.++|+. ++|.++.- .+|+. ...|
T Consensus 19 ~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~-~~g~~~~~~~~g 97 (108)
T cd02996 19 ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLF-RNGMMMKREYRG 97 (108)
T ss_pred CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEE-eCCcCcceecCC
Confidence 345889999999999999999987631 000011 12588999999999999999996 69998753 57762 2235
Q ss_pred CCCHHHHHHHH
Q 031531 121 CINRFRIEAWL 131 (158)
Q Consensus 121 rfd~d~L~~~L 131 (158)
.-+.++|.++|
T Consensus 98 ~~~~~~l~~fi 108 (108)
T cd02996 98 QRSVEALAEFV 108 (108)
T ss_pred CCCHHHHHhhC
Confidence 45667777664
No 92
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.29 E-value=2.4e-06 Score=64.16 Aligned_cols=35 Identities=40% Similarity=0.750 Sum_probs=32.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
|++|+.|+|+-|.+|+++|++. +++|+++|+.+++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~----------gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA----------GHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------CCCcEEeehhcCC
Confidence 7899999999999999999997 8999999998654
No 93
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.28 E-value=7.1e-06 Score=61.37 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=62.7
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHH-HhcCC-ccceEEEeccCCeE--EEec
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWE-KSYQY-EIPVLARVLSDGTE--VLMA 120 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~-ekyg~-~VPVL~i~~idGe~--i~~g 120 (158)
....-+..|..|||+.|..++..++++.. ... ..+.+-.||+++++++. ++|+. ++|++..- .+|+. ...|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~---~~~-~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf-~~g~~~~~y~G 102 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQ---KLS-DQVLFVAINCWWPQGKCRKQKHFFYFPVIHLY-YRSRGPIEYKG 102 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH---Hhc-CCeEEEEEECCCChHHHHHhcCCcccCEEEEE-ECCccceEEeC
Confidence 34567889999999999999999999842 111 24789999999999887 58995 79998753 57763 4567
Q ss_pred CCCHHHHHHH
Q 031531 121 CINRFRIEAW 130 (158)
Q Consensus 121 rfd~d~L~~~ 130 (158)
..+.++|..|
T Consensus 103 ~~~~~~i~~~ 112 (113)
T cd03006 103 PMRAPYMEKF 112 (113)
T ss_pred CCCHHHHHhh
Confidence 7888888765
No 94
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.27 E-value=6.3e-06 Score=55.25 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=41.3
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC---CHHHHHhcCC-ccceEEEeccCCeEE
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQY-EIPVLARVLSDGTEV 117 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~---d~el~ekyg~-~VPVL~i~~idGe~i 117 (158)
++|+.++|++|.+++..|+++ |++|+.++++. .+++.+.... .||++.. .||..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~----------gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~--~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA----------GITVELREVELKNKPAEMLAASPKGTVPVLVL--GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc----------CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE--CCCcEE
Confidence 699999999999999999997 77777777762 3455554443 6999982 247655
No 95
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.26 E-value=6e-06 Score=64.99 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=54.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-c------cceEEEeccCCeEE
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-E------IPVLARVLSDGTEV 117 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~------VPVL~i~~idGe~i 117 (158)
...-+..|.++||+.|...++.++++.. .....++.+-.||+++++++.++|+. . +|+++. ..||+++
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~---~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~il-f~~Gk~v 121 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSL---KYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIIL-FQGGKEV 121 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHH---HcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEE-EECCEEE
Confidence 3456899999999999999999998842 12224699999999999999999986 3 898874 4688865
No 96
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.23 E-value=1.6e-06 Score=64.52 Aligned_cols=36 Identities=25% Similarity=0.555 Sum_probs=33.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE 95 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e 95 (158)
|++|+.++|+.|.+++++|++. +++|+.+|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~----------~i~~~~idi~~~~~ 36 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN----------GIEYQFIDIGEDGP 36 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc----------CCceEEEecCCChh
Confidence 5799999999999999999997 89999999998764
No 97
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.21 E-value=1.1e-05 Score=57.19 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=59.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC--CHHHHHhcCC-ccceEEEeccCCe-------E
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQY-EIPVLARVLSDGT-------E 116 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~--d~el~ekyg~-~VPVL~i~~idGe-------~ 116 (158)
.+.+..|..+||+.|.+....++++.. .-...+.+-.+|+++ ++++.++|+. ++|.+++- .+|+ .
T Consensus 19 ~~~lv~f~a~wC~~C~~~~~~~~~~a~----~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~-~~~~~~~~~~~~ 93 (109)
T cd03002 19 YTTLVEFYAPWCGHCKNLKPEYAKAAK----ELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF-RPPKKASKHAVE 93 (109)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHH----HhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE-eCCCcccccccc
Confidence 347889999999999999999988742 112357888899998 7789999996 69998854 3443 1
Q ss_pred EEecCCCHHHHHHHH
Q 031531 117 VLMACINRFRIEAWL 131 (158)
Q Consensus 117 i~~grfd~d~L~~~L 131 (158)
...|..+.++|.+|+
T Consensus 94 ~~~G~~~~~~l~~fi 108 (109)
T cd03002 94 DYNGERSAKAIVDFV 108 (109)
T ss_pred cccCccCHHHHHHHh
Confidence 234667778888776
No 98
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.21 E-value=1.5e-05 Score=66.38 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=66.1
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEe--cC
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM--AC 121 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~--gr 121 (158)
...+.+..|+.|||+.|...++.++++.. .. ...+.+-.+|+++++++.++|+. .+|.++.- .+|+...+ |.
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~---~~-~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f-~~G~~v~~~~G~ 125 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAK---AL-KGQVNVADLDATRALNLAKRFAIKGYPTLLLF-DKGKMYQYEGGD 125 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHH---Hc-CCCeEEEEecCcccHHHHHHcCCCcCCEEEEE-ECCEEEEeeCCC
Confidence 34567899999999999999999988742 11 12478889999999999999996 69998853 57876543 45
Q ss_pred CCHHHHHHHHHhc
Q 031531 122 INRFRIEAWLSQM 134 (158)
Q Consensus 122 fd~d~L~~~L~~~ 134 (158)
.+.++|.+++.+.
T Consensus 126 ~s~e~L~~fi~~~ 138 (224)
T PTZ00443 126 RSTEKLAAFALGD 138 (224)
T ss_pred CCHHHHHHHHHHH
Confidence 7889999887554
No 99
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.18 E-value=1.1e-05 Score=53.01 Aligned_cols=66 Identities=23% Similarity=0.370 Sum_probs=45.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--C----CHHHHHhcCC-ccceEEEeccCCeEEEecCC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T----NPEWEKSYQY-EIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~----d~el~ekyg~-~VPVL~i~~idGe~i~~grf 122 (158)
++||+.++|++|.+++..|+.. +++|+.++++ . .+++.+.... .||++.. .||..+ .
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~----------~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~~l----~ 64 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEK----------GIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL--DDGTVI----T 64 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHc----------CCCceEEEeecccCccCCHHHHhhCCCCCCCEEEe--CCCCEE----e
Confidence 3799999999999999999987 6777776665 2 2334443333 6999982 255444 3
Q ss_pred CHHHHHHHH
Q 031531 123 NRFRIEAWL 131 (158)
Q Consensus 123 d~d~L~~~L 131 (158)
+-..|.++|
T Consensus 65 es~aI~~yL 73 (74)
T cd03051 65 ESVAICRYL 73 (74)
T ss_pred cHHHHHHHh
Confidence 446666665
No 100
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.17 E-value=1.2e-05 Score=56.42 Aligned_cols=83 Identities=14% Similarity=0.189 Sum_probs=63.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC---ccceEEEeccC--CeEE-Ee
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSD--GTEV-LM 119 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~---~VPVL~i~~id--Ge~i-~~ 119 (158)
..+.+.+|..+||+.|+..++.++++.. .. ...+.|-.+|+++++++.+.||. .+|.+++- .+ |+.. ..
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~---~~-~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~-~~~~~~k~~~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAK---KF-KGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAII-NLSDGKKYLMP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHH---Hh-CCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEE-ecccccccCCC
Confidence 5677999999999999999999999741 11 13589999999999999999986 59999864 23 4322 22
Q ss_pred -cCCCHHHHHHHHHh
Q 031531 120 -ACINRFRIEAWLSQ 133 (158)
Q Consensus 120 -grfd~d~L~~~L~~ 133 (158)
+.++.+.|.+++++
T Consensus 87 ~~~~~~~~l~~fi~~ 101 (103)
T cd02982 87 EEELTAESLEEFVED 101 (103)
T ss_pred ccccCHHHHHHHHHh
Confidence 32488999999875
No 101
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.16 E-value=1.6e-05 Score=52.41 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=46.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC--C----HHHHHhcC-CccceEEEeccCCeEEEecCC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N----PEWEKSYQ-YEIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~--d----~el~ekyg-~~VPVL~i~~idGe~i~~grf 122 (158)
++||+.++|+.|.+++-.|+.. |++|+.++|+. + +++.+... ..+|++. .+|..+ .
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~---~~~~~i----~ 63 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALL----------GIPYEWVEVDILKGETRTPEFLALNPNGEVPVLE---LDGRVL----A 63 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHc----------CCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEE---ECCEEE----E
Confidence 4799999999999999999987 78888888762 2 23333322 3699998 567655 2
Q ss_pred CHHHHHHHH
Q 031531 123 NRFRIEAWL 131 (158)
Q Consensus 123 d~d~L~~~L 131 (158)
+-..|.++|
T Consensus 64 es~aI~~yl 72 (73)
T cd03056 64 ESNAILVYL 72 (73)
T ss_pred cHHHHHHHh
Confidence 346666655
No 102
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.15 E-value=1.1e-05 Score=61.37 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=58.0
Q ss_pred CceEEEEeC-------CCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC-------HHHHHhcCC--ccceEEEe
Q 031531 47 TRKLVLYSK-------PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-------PEWEKSYQY--EIPVLARV 110 (158)
Q Consensus 47 ~~~VtLYTk-------pgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d-------~el~ekyg~--~VPVL~i~ 110 (158)
.+-+..|.. +||+.|..++..|+++.. ....++.|-.||++++ .+++.+|+. .+|+++.-
T Consensus 22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~----~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~ 97 (119)
T cd02952 22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALK----AAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRW 97 (119)
T ss_pred CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHH----HCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEE
Confidence 456888888 999999999999999742 1112689999999864 478888885 59999964
Q ss_pred ccCCeEE-EecCCCHHHHHHHH
Q 031531 111 LSDGTEV-LMACINRFRIEAWL 131 (158)
Q Consensus 111 ~idGe~i-~~grfd~d~L~~~L 131 (158)
.+|+.+ ..--++.+.+..++
T Consensus 98 -~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 98 -KTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred -cCCceecchhhcCHHHHHHhh
Confidence 344433 33446777777665
No 103
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.15 E-value=2.3e-06 Score=65.50 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=54.5
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhc----CCccceEEEeccCCeEEEec
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----QYEIPVLARVLSDGTEVLMA 120 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~eky----g~~VPVL~i~~idGe~i~~g 120 (158)
....++.+++.+|||.|.....+|.+... ...+++++.+..++|+++.++| +..||++++-..+|++++.+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae-----~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAE-----ANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHH-----H-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHH-----hCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE
Confidence 35568999999999999999999999852 2348999999999999988887 35799999754467888655
Q ss_pred CCCHHHHHHHHHh
Q 031531 121 CINRFRIEAWLSQ 133 (158)
Q Consensus 121 rfd~d~L~~~L~~ 133 (158)
.-.|..+.+++.+
T Consensus 115 gerP~~~~~~~~~ 127 (129)
T PF14595_consen 115 GERPKEVQELVDE 127 (129)
T ss_dssp ESS-HHHH-----
T ss_pred cCCCHHHhhcccc
Confidence 5778888777654
No 104
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.14 E-value=8.3e-06 Score=60.82 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=31.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
|++|+.|+|.-|.+|+++|++. +++|+.+|+.+++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~----------~i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDK----------GIEPEVVKYLKNP 35 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHC----------CCCeEEEeccCCC
Confidence 5899999999999999999997 8999999998654
No 105
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.12 E-value=4.2e-06 Score=62.12 Aligned_cols=35 Identities=26% Similarity=0.650 Sum_probs=32.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
|++|+.++|+.|.+++++|++. |++|+.+||.+++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~----------gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH----------QIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------CCceEEEecCCCc
Confidence 8999999999999999999997 8999999998764
No 106
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.10 E-value=2.6e-05 Score=66.29 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=64.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC-----------CHHHHHhcCC-ccceEEEeccC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----------NPEWEKSYQY-EIPVLARVLSD 113 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~-----------d~el~ekyg~-~VPVL~i~~id 113 (158)
....+..|.++||++|......|+++. ...++++..|++|. |.++.+++|. .+|.+++...+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la------~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFE------DRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHH------HHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 456788999999999999999999983 44578888899886 3567888996 69999975443
Q ss_pred Ce---EEEecCCCHHHHHHHHHhc
Q 031531 114 GT---EVLMACINRFRIEAWLSQM 134 (158)
Q Consensus 114 Ge---~i~~grfd~d~L~~~L~~~ 134 (158)
|. .+..|..+.++|.+.+...
T Consensus 240 ~~~v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 240 PNQFTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHH
Confidence 43 2456878999988877543
No 107
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.07 E-value=2.1e-05 Score=53.49 Aligned_cols=66 Identities=23% Similarity=0.415 Sum_probs=52.4
Q ss_pred EEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC---CHHHHHhcCC-ccceEEEeccCCeEEEecCCCHHHH
Q 031531 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQY-EIPVLARVLSDGTEVLMACINRFRI 127 (158)
Q Consensus 52 LYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~---d~el~ekyg~-~VPVL~i~~idGe~i~~grfd~d~L 127 (158)
||+.++|++|.++.-.|+.. +++|+.++++. .+++.+.... .||++. .||+.+ .+-..|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~----------~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~---~~g~~l----~dS~~I 63 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK----------GIPYELVPVDPEEKRPEFLKLNPKGKVPVLV---DDGEVL----TDSAAI 63 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH----------TEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE---ETTEEE----ESHHHH
T ss_pred CCCcCCChHHHHHHHHHHHc----------CCeEEEeccCcccchhHHHhhcccccceEEE---ECCEEE----eCHHHH
Confidence 79999999999999999998 78888888873 3445555543 699999 688766 356889
Q ss_pred HHHHHhc
Q 031531 128 EAWLSQM 134 (158)
Q Consensus 128 ~~~L~~~ 134 (158)
.++|++.
T Consensus 64 ~~yL~~~ 70 (75)
T PF13417_consen 64 IEYLEER 70 (75)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 108
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.06 E-value=4.7e-06 Score=63.97 Aligned_cols=35 Identities=29% Similarity=0.616 Sum_probs=32.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
|++|+.|+|+.|.+|+++|++. +++|+++|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~----------gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN----------QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc----------CCCeEEEEeeCCc
Confidence 8999999999999999999997 8999999998754
No 109
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.02 E-value=3.2e-05 Score=58.74 Aligned_cols=37 Identities=19% Similarity=0.474 Sum_probs=33.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
+.|++|+.|.|.-|.+|+++|++. |++|+++|+.+++
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~----------gi~~~~~~y~~~~ 37 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEH----------GIEYTFIDYLKTP 37 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHc----------CCCcEEEEeecCC
Confidence 469999999999999999999997 9999999998653
No 110
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.00 E-value=5.8e-06 Score=61.11 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=32.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
|++|+.|+|+-|.+|+++|++. +++|+++|+.++|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~----------~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR----------GVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc----------CCCeEEEecccCC
Confidence 5899999999999999999997 9999999999765
No 111
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.97 E-value=5.6e-05 Score=52.47 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=56.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcC-CccceEEEeccCCe----EEEecC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ-YEIPVLARVLSDGT----EVLMAC 121 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg-~~VPVL~i~~idGe----~i~~gr 121 (158)
..-+.+|..+||+.|....+.++++.. .-.....+.+-.+|.++++ ....++ ..+|.++.- .+|+ ..+.|.
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~--~~~~~~~~~~~~id~~~~~-~~~~~~~~~~Pt~~~~-~~~~~~~~~~~~g~ 94 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAE--KLKGDDNVVIAKMDATAND-VPSEFVVDGFPTILFF-PAGDKSNPIKYEGD 94 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHH--HhcCCCCEEEEEEeCcchh-hhhhccCCCCCEEEEE-cCCCcCCceEccCC
Confidence 456888999999999999999988742 1112246889999998874 556666 689988853 3454 223565
Q ss_pred CCHHHHHHHH
Q 031531 122 INRFRIEAWL 131 (158)
Q Consensus 122 fd~d~L~~~L 131 (158)
.+.++|.+|+
T Consensus 95 ~~~~~l~~fi 104 (104)
T cd02995 95 RTLEDLIKFI 104 (104)
T ss_pred cCHHHHHhhC
Confidence 6667776653
No 112
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.96 E-value=4e-05 Score=58.37 Aligned_cols=67 Identities=13% Similarity=0.317 Sum_probs=54.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCC-cceEEEEcCCCHHHHHhcCCc-cceEEEeccCCeEE
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEV 117 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~-I~~eeIDId~d~el~ekyg~~-VPVL~i~~idGe~i 117 (158)
....-|.-|+++||+.|...-+.|+++. .+..+ +.|-.+|+++.+++.++|+.. .|..+ -..+|+.+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela-----~~~~~~~~f~kVDVDev~dva~~y~I~amPtfv-ffkngkh~ 81 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTS-----HDLSKMASIYLVDVDKVPVYTQYFDISYIPSTI-FFFNGQHM 81 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHH-----HHccCceEEEEEeccccHHHHHhcCceeCcEEE-EEECCcEE
Confidence 3456688899999999999999999984 22345 889999999999999999976 89877 33577643
No 113
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.89 E-value=5.2e-05 Score=58.12 Aligned_cols=35 Identities=34% Similarity=0.658 Sum_probs=32.2
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN 93 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d 93 (158)
.+++|+-|+|.-|.+|+++|++. |++|+.+|+.++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~----------gi~~~~~d~~~~ 36 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS----------GHDVEVQDILKE 36 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC----------CCCcEEEeccCC
Confidence 47899999999999999999997 999999999864
No 114
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.88 E-value=5.3e-05 Score=55.21 Aligned_cols=61 Identities=13% Similarity=0.018 Sum_probs=46.2
Q ss_pred chHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhc----C-----CccceEEEeccCCeEEEecCCCHHHHHHH
Q 031531 60 LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----Q-----YEIPVLARVLSDGTEVLMACINRFRIEAW 130 (158)
Q Consensus 60 lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~eky----g-----~~VPVL~i~~idGe~i~~grfd~d~L~~~ 130 (158)
-|..++.+|+.. +|+|+++||+.|++.++.+ + ..+|.++ ++|+.+ |++ |++.++
T Consensus 18 ~~~~v~~lL~~k----------~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIF---i~~~~i--Gg~--ddl~~l 80 (92)
T cd03030 18 RQQEVLGFLEAK----------KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIF---NGDEYC--GDY--EAFFEA 80 (92)
T ss_pred HHHHHHHHHHHC----------CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEE---ECCEEe--eCH--HHHHHH
Confidence 589999999997 8999999999988755542 3 4689999 678644 434 788777
Q ss_pred HHhcCCC
Q 031531 131 LSQMSLD 137 (158)
Q Consensus 131 L~~~~l~ 137 (158)
-++-.|+
T Consensus 81 ~e~g~L~ 87 (92)
T cd03030 81 KENNTLE 87 (92)
T ss_pred HhCCCHH
Confidence 6655554
No 115
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.88 E-value=7.8e-05 Score=53.91 Aligned_cols=81 Identities=12% Similarity=0.198 Sum_probs=55.5
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC-CHHHHH-hcCC-ccceEEEeccCCe--EEEe-c
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-NPEWEK-SYQY-EIPVLARVLSDGT--EVLM-A 120 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~-d~el~e-kyg~-~VPVL~i~~idGe--~i~~-g 120 (158)
.+.++.|..+||+.|.++++.++++.. .....++.+-.+|+++ +..+.. .++. .+|.++.- .+|. ...+ |
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~---~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f-~~~~~~~~~y~g 97 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAE---KLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF-PKNSRQPIKYPS 97 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHH---HhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEE-cCCCCCceeccC
Confidence 567899999999999999999988641 1223468899999997 456654 4776 79988743 3432 2223 3
Q ss_pred C-CCHHHHHHHH
Q 031531 121 C-INRFRIEAWL 131 (158)
Q Consensus 121 r-fd~d~L~~~L 131 (158)
. -+.+.|.+||
T Consensus 98 ~~~~~~~l~~f~ 109 (109)
T cd02993 98 EQRDVDSLLMFV 109 (109)
T ss_pred CCCCHHHHHhhC
Confidence 1 4666776653
No 116
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.87 E-value=6.7e-05 Score=69.68 Aligned_cols=84 Identities=19% Similarity=0.285 Sum_probs=61.3
Q ss_pred CceEEEEeCCCCCchHHHHHHH---HHhhccCCCCCCCCcceEEEEcCCC----HHHHHhcCC-ccceEEEeccCCeEE-
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKL---QAAFLLSGPDSLHDVDLQVRDITTN----PEWEKSYQY-EIPVLARVLSDGTEV- 117 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L---~~~~~~~~~~~~~~I~~eeIDId~d----~el~ekyg~-~VPVL~i~~idGe~i- 117 (158)
++-+..|+.+||+.|+..++.. ++.. ....++.+-.+|++++ .++.++|+. .+|.++.-..||+++
T Consensus 475 K~VlVdF~A~WC~~Ck~~e~~~~~~~~v~-----~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 475 KPVMLDLYADWCVACKEFEKYTFSDPQVQ-----QALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred CcEEEEEECCcCHhHHHHHHHhcCCHHHH-----HHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 4567789999999999987753 2221 1123688999999864 467888985 699998643468763
Q ss_pred ---EecCCCHHHHHHHHHhcC
Q 031531 118 ---LMACINRFRIEAWLSQMS 135 (158)
Q Consensus 118 ---~~grfd~d~L~~~L~~~~ 135 (158)
..|..+++++.++|++.+
T Consensus 550 ~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 550 DARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred cccccCCCCHHHHHHHHHHhc
Confidence 246689999999998754
No 117
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.86 E-value=0.00013 Score=57.35 Aligned_cols=82 Identities=13% Similarity=0.226 Sum_probs=59.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC------------HHHH-Hhc---CC-ccceEE
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN------------PEWE-KSY---QY-EIPVLA 108 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d------------~el~-eky---g~-~VPVL~ 108 (158)
.+..+..|..+||++|.+....|+++. +..++.+.-|+++++ ++.. ..| +. .+|..+
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~------~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~ 123 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFS------QQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATF 123 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHH------HHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEE
Confidence 345699999999999999999999883 334688888888753 2333 234 43 689999
Q ss_pred EeccCCeE---EEecCCCHHHHHHHHHh
Q 031531 109 RVLSDGTE---VLMACINRFRIEAWLSQ 133 (158)
Q Consensus 109 i~~idGe~---i~~grfd~d~L~~~L~~ 133 (158)
+...+|.. ...|..+++++++.+.+
T Consensus 124 LID~~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 124 LVNVNTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred EEeCCCCEEEEEeecccCHHHHHHHHHH
Confidence 74445553 34687899999888765
No 118
>PTZ00102 disulphide isomerase; Provisional
Probab=97.85 E-value=0.00012 Score=64.33 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=68.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCC-CCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE-EecCCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGP-DSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV-LMACIN 123 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~-~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i-~~grfd 123 (158)
..-++.|..+||+.|.+.+..+++... .. ....++.+-.+|.+++.++.++|+. ++|.+.+- .+|+.+ ..|..+
T Consensus 50 ~~~lv~f~a~wC~~Ck~~~p~~~~~a~--~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~-~~g~~~~y~g~~~ 126 (477)
T PTZ00102 50 EIVLVKFYAPWCGHCKRLAPEYKKAAK--MLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFF-NKGNPVNYSGGRT 126 (477)
T ss_pred CcEEEEEECCCCHHHHHhhHHHHHHHH--HHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEE-ECCceEEecCCCC
Confidence 457889999999999999987776421 00 1124689999999999999999996 69998753 455543 456688
Q ss_pred HHHHHHHHHhcCCCcee
Q 031531 124 RFRIEAWLSQMSLDCVM 140 (158)
Q Consensus 124 ~d~L~~~L~~~~l~~~~ 140 (158)
.++|.+++.+...+.+.
T Consensus 127 ~~~l~~~l~~~~~~~~~ 143 (477)
T PTZ00102 127 ADGIVSWIKKLTGPAVT 143 (477)
T ss_pred HHHHHHHHHHhhCCCce
Confidence 99999999987655443
No 119
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.85 E-value=9.6e-05 Score=59.97 Aligned_cols=80 Identities=21% Similarity=0.198 Sum_probs=61.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEE--ec---
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL--MA--- 120 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~--~g--- 120 (158)
..-|+.|+.+||+.|..+.+.|+++. ..+..+.|-.||+++. .++|+. .+|++++ +.||+.+. .|
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA-----~k~~~vkFvkI~ad~~---~~~~~i~~lPTlli-yk~G~~v~~ivG~~~ 173 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELA-----RKFPDTKFVKIISTQC---IPNYPDKNLPTILV-YRNGDIVKQFIGLLE 173 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHH-----HHCCCCEEEEEEhHHh---HhhCCCCCCCEEEE-EECCEEEEEEeCchh
Confidence 34577899999999999999999984 2344688999998753 478886 6999985 46887442 12
Q ss_pred ----CCCHHHHHHHHHhcC
Q 031531 121 ----CINRFRIEAWLSQMS 135 (158)
Q Consensus 121 ----rfd~d~L~~~L~~~~ 135 (158)
.|+.++|+.+|.+.|
T Consensus 174 ~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 174 FGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred hCCCCCCHHHHHHHHHhcC
Confidence 688999999998764
No 120
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.85 E-value=9.3e-05 Score=61.04 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=65.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC-----------CCHHHHHhcCC-ccceEEEeccC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-----------TNPEWEKSYQY-EIPVLARVLSD 113 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId-----------~d~el~ekyg~-~VPVL~i~~id 113 (158)
..-.+.+|.+++|++|+....+|..+. ...|+++..|++| .|.++.+++|. .+|.++.+..+
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~------~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFA------DKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHH------HHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 345688999999999999999999983 5679999999998 36788899997 58999987665
Q ss_pred C-e--EEEecCCCHHHHHHHH
Q 031531 114 G-T--EVLMACINRFRIEAWL 131 (158)
Q Consensus 114 G-e--~i~~grfd~d~L~~~L 131 (158)
+ + .+..|..+.++|.+-+
T Consensus 194 ~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 194 TKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCeEEEEeeecCCHHHHHHhh
Confidence 6 3 4568989999987643
No 121
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=5e-05 Score=54.88 Aligned_cols=57 Identities=32% Similarity=0.450 Sum_probs=43.7
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH-------HH---------HhcCC-ccceEEEeccC
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE-------WE---------KSYQY-EIPVLARVLSD 113 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e-------l~---------ekyg~-~VPVL~i~~id 113 (158)
++|....||.|..+++.|+++ ++.|+.|||++... ++ +..|+ +||-|.. .|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl----------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~--~d 72 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL----------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT--DD 72 (85)
T ss_pred eeeccccCcchHHHHHHHHHc----------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe--CC
Confidence 799999999999999999998 89999999997442 11 12354 7999993 45
Q ss_pred CeEEEec
Q 031531 114 GTEVLMA 120 (158)
Q Consensus 114 Ge~i~~g 120 (158)
|+.+ .|
T Consensus 73 ~~vV-l~ 78 (85)
T COG4545 73 GKVV-LG 78 (85)
T ss_pred CcEE-Ee
Confidence 6544 44
No 122
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.81 E-value=0.00018 Score=48.24 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=50.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC---CHHHHHhcC--CccceEEEeccCCeEEEecCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQ--YEIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~---d~el~ekyg--~~VPVL~i~~idGe~i~~grfd~ 124 (158)
++||+.+.|+.|.++.-.|+.. |++|+.++++. .+++.+... ..||++. .+|..+ .+-
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~----------gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~---~~~~~l----~eS 63 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALK----------GVPYEYVEEDLGNKSELLLASNPVHKKIPVLL---HNGKPI----CES 63 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHc----------CCCCEEEEeCcccCCHHHHHhCCCCCCCCEEE---ECCEEe----ehH
Confidence 3699999999999999999987 78888877663 234444332 4699998 567554 355
Q ss_pred HHHHHHHHhc
Q 031531 125 FRIEAWLSQM 134 (158)
Q Consensus 125 d~L~~~L~~~ 134 (158)
..|.++|++.
T Consensus 64 ~aI~~yL~~~ 73 (74)
T cd03058 64 LIIVEYIDEA 73 (74)
T ss_pred HHHHHHHHhh
Confidence 8888888753
No 123
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.81 E-value=0.00017 Score=58.77 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=60.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC-----------H--HHHHhcC---CccceEEEeccC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----------P--EWEKSYQ---YEIPVLARVLSD 113 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d-----------~--el~ekyg---~~VPVL~i~~id 113 (158)
+.+|..+||++|.+....|.++. +..++++.-|+++++ . ...+.|| ..+|..++...+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~------~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~ 146 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLA------QQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN 146 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHH------HHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC
Confidence 88999999999999999999873 334788888888743 1 2455788 379999987678
Q ss_pred CeE---EEecCCCHHHHHHHHHh
Q 031531 114 GTE---VLMACINRFRIEAWLSQ 133 (158)
Q Consensus 114 Ge~---i~~grfd~d~L~~~L~~ 133 (158)
|+. ...|..+.++|++.+.+
T Consensus 147 G~i~~~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 147 TLEALPLLQGATDAAGFMARMDT 169 (181)
T ss_pred CcEEEEEEECCCCHHHHHHHHHH
Confidence 874 46788999988887754
No 124
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.79 E-value=8.4e-05 Score=44.28 Aligned_cols=55 Identities=29% Similarity=0.494 Sum_probs=43.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHH---hcC-CccceEEE
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK---SYQ-YEIPVLAR 109 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~e---kyg-~~VPVL~i 109 (158)
+++|..++|+.|.+.++.+++.. ....++++..+|++++.+..+ .++ ..+|.+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELA-----LLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHH-----hhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 46899999999999999999751 223489999999998776544 455 46999984
No 125
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.77 E-value=0.00029 Score=47.12 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=49.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC------HHHHHhcCC-ccceEEEeccCCeEEEecCC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN------PEWEKSYQY-EIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d------~el~ekyg~-~VPVL~i~~idGe~i~~grf 122 (158)
++||+.+.|+.|.++.-.|+.. +++|+.++++.. +++.+.... .+|++. .+|..+ +
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~---~~g~~l----~ 64 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK----------GVDYELVPVDLTKGEHKSPEHLARNPFGQIPALE---DGDLKL----F 64 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc----------CCCcEEEEeCccccccCCHHHHhhCCCCCCCEEE---ECCEEE----E
Confidence 6899999999999999999987 787877776631 233333333 599998 567655 3
Q ss_pred CHHHHHHHHHh
Q 031531 123 NRFRIEAWLSQ 133 (158)
Q Consensus 123 d~d~L~~~L~~ 133 (158)
+...|.++|.+
T Consensus 65 es~aI~~yL~~ 75 (76)
T cd03053 65 ESRAITRYLAE 75 (76)
T ss_pred cHHHHHHHHhh
Confidence 45888888864
No 126
>PTZ00102 disulphide isomerase; Provisional
Probab=97.74 E-value=0.00017 Score=63.31 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=65.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCe-E--EEecCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGT-E--VLMACI 122 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe-~--i~~grf 122 (158)
..-+..|..|||+.|...+..++++... ......+.+-.+|.++|+...++++. .+|.++.- .+|+ . ...|..
T Consensus 376 k~vlv~f~a~wC~~C~~~~p~~~~~a~~--~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~-~~~~~~~~~~~G~~ 452 (477)
T PTZ00102 376 KDVLLEIYAPWCGHCKNLEPVYNELGEK--YKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFV-KAGERTPIPYEGER 452 (477)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHH--hccCCcEEEEEEECCCCccchhcCCCcccCeEEEE-ECCCcceeEecCcC
Confidence 4568889999999999999999887321 01123578899999999888888886 69998753 3443 2 346778
Q ss_pred CHHHHHHHHHhcCC
Q 031531 123 NRFRIEAWLSQMSL 136 (158)
Q Consensus 123 d~d~L~~~L~~~~l 136 (158)
+.++|.++|++..-
T Consensus 453 ~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 453 TVEGFKEFVNKHAT 466 (477)
T ss_pred CHHHHHHHHHHcCC
Confidence 99999999988764
No 127
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.74 E-value=0.00017 Score=62.30 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=67.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeE---EEecCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE---VLMACI 122 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~---i~~grf 122 (158)
..-+..|+.+||+.|......+++..... .....++.+-.+|.++++++.++|+. ++|.++.- .+|+. ...|..
T Consensus 19 ~~~~v~f~a~wC~~c~~~~~~~~~~a~~~-~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~-~~g~~~~~~~~g~~ 96 (462)
T TIGR01130 19 EFVLVEFYAPWCGHCKSLAPEYEKAADEL-KKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIF-RNGEDSVSDYNGPR 96 (462)
T ss_pred CCEEEEEECCCCHHHHhhhHHHHHHHHHH-hhcCCceEEEEEECCCcHHHHHhCCCccccEEEEE-eCCccceeEecCCC
Confidence 34688999999999999998887653100 01123589999999999999999996 69988743 46663 345768
Q ss_pred CHHHHHHHHHhcCCCce
Q 031531 123 NRFRIEAWLSQMSLDCV 139 (158)
Q Consensus 123 d~d~L~~~L~~~~l~~~ 139 (158)
+.+.|.+++.+.--+.+
T Consensus 97 ~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 97 DADGIVKYMKKQSGPAV 113 (462)
T ss_pred CHHHHHHHHHHhcCCCc
Confidence 88999999987754443
No 128
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.71 E-value=9.2e-05 Score=55.17 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=48.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH-HHHhcCC---ccceEEEeccCCeEE
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE-WEKSYQY---EIPVLARVLSDGTEV 117 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e-l~ekyg~---~VPVL~i~~idGe~i 117 (158)
..+-+..|+++||+.|+..++.+.+... ....+..|..+|++++++ ..++|+. .+|.++.-..+|+.+
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~----~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKE----ISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHH----HHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCc
Confidence 4566888999999999999999888521 111245788899987653 4456765 399998654477753
No 129
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.61 E-value=0.00037 Score=46.47 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=46.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC---CHHHHHhcCC-ccceEEEeccCCeEEEecCCCHH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQY-EIPVLARVLSDGTEVLMACINRF 125 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~---d~el~ekyg~-~VPVL~i~~idGe~i~~grfd~d 125 (158)
++||+.+.|++|.+++-.|+... .+++|+.+.++. .+++.+.... .||++.. .||..+ .+-.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~--------~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~g~~l----~es~ 66 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETG--------LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL--DDGEAL----FDSR 66 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhC--------CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE--CCCCEE----ECHH
Confidence 37999999999999999998831 178888888863 3444444333 6999972 356554 2346
Q ss_pred HHHHHH
Q 031531 126 RIEAWL 131 (158)
Q Consensus 126 ~L~~~L 131 (158)
.|.++|
T Consensus 67 aI~~yL 72 (73)
T cd03049 67 VICEYL 72 (73)
T ss_pred HHHhhh
Confidence 666665
No 130
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.61 E-value=0.00041 Score=52.84 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=46.5
Q ss_pred CceEEEEeCCCCCchHHHHH-HHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh--------cCC-ccceEEEeccCCeE
Q 031531 47 TRKLVLYSKPGCCLCDGLKE-KLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS--------YQY-EIPVLARVLSDGTE 116 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~-~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek--------yg~-~VPVL~i~~idGe~ 116 (158)
++-+..|+.+||+.|+..++ .+..-. +.. .-+.++.+.++|+++++++.++ |+. +.|.++....+|++
T Consensus 16 KpVll~f~a~WC~~Ck~me~~~f~~~~-V~~-~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~ 93 (124)
T cd02955 16 KPIFLSIGYSTCHWCHVMEHESFEDEE-VAA-ILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKP 93 (124)
T ss_pred CeEEEEEccCCCHhHHHHHHHccCCHH-HHH-HHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCE
Confidence 44566789999999999975 232200 000 0023788999999988876553 343 69999976678887
Q ss_pred EE
Q 031531 117 VL 118 (158)
Q Consensus 117 i~ 118 (158)
+.
T Consensus 94 ~~ 95 (124)
T cd02955 94 FF 95 (124)
T ss_pred Ee
Confidence 64
No 131
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.53 E-value=0.00065 Score=46.36 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=45.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC------CHHHHHhcC-CccceEEEeccCCeEEEecCC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQ-YEIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~------d~el~ekyg-~~VPVL~i~~idGe~i~~grf 122 (158)
+++|..++|+.|.++.-.|+++ |++|+.++++- .+++.+.-. ..||+|. .||..+.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~---~~g~~l~---- 63 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEK----------GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI---HGDNIIC---- 63 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHc----------CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE---ECCEEEE----
Confidence 4799999999999999999887 67777766652 223433332 3699998 5776553
Q ss_pred CHHHHHHHH
Q 031531 123 NRFRIEAWL 131 (158)
Q Consensus 123 d~d~L~~~L 131 (158)
+-..|.++|
T Consensus 64 Es~aI~~yL 72 (73)
T cd03052 64 DPTQIIDYL 72 (73)
T ss_pred cHHHHHHHh
Confidence 346777665
No 132
>PRK10026 arsenate reductase; Provisional
Probab=97.50 E-value=0.00013 Score=57.30 Aligned_cols=38 Identities=13% Similarity=0.370 Sum_probs=34.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
|.+|++|+.|+|.-|.+|+++|++. +++|+++|+.+++
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~----------gi~~~~~d~~~~p 38 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNS----------GTEPTIIHYLETP 38 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHC----------CCCcEEEeeeCCC
Confidence 3579999999999999999999997 8999999998654
No 133
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.46 E-value=0.0006 Score=56.65 Aligned_cols=82 Identities=16% Similarity=0.295 Sum_probs=56.6
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEE-----------------------------------
Q 031531 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVR----------------------------------- 88 (158)
Q Consensus 44 ~~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeI----------------------------------- 88 (158)
+.....|++||-|.||+|+++.+.|+++.+ .++++..+
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~ 177 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA-------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGK 177 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc-------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 345677999999999999999999988742 12333222
Q ss_pred ---------EcCCCHHHHHhcCC-ccceEEEeccCCeEEEecCCCHHHHHHHHHhcC
Q 031531 89 ---------DITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLSQMS 135 (158)
Q Consensus 89 ---------DId~d~el~ekyg~-~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~~ 135 (158)
+|+++.++.+++|. ..|.++. .||+.+ -|..++++|+++|++.+
T Consensus 178 ~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~-~G~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 178 DVSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV-PGYQGPKEMKAFLDEHQ 231 (232)
T ss_pred CCCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe-eCCCCHHHHHHHHHHcc
Confidence 22223334455665 5899983 488754 66678999999998754
No 134
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.44 E-value=0.00068 Score=45.28 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=43.1
Q ss_pred CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceEEEeccCCeEEEecCCCHHHHHHHHHh
Q 031531 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 57 gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~ 133 (158)
.|++|.+++.+|+.. +++|+.++++... . .-.-.||++. .+|+.+ .+-..|.++|++
T Consensus 15 ~sp~~~~v~~~L~~~----------~i~~~~~~~~~~~--~-~p~g~vP~l~---~~g~~l----~es~~I~~yL~~ 71 (72)
T cd03054 15 LSPECLKVETYLRMA----------GIPYEVVFSSNPW--R-SPTGKLPFLE---LNGEKI----ADSEKIIEYLKK 71 (72)
T ss_pred CCHHHHHHHHHHHhC----------CCceEEEecCCcc--c-CCCcccCEEE---ECCEEE----cCHHHHHHHHhh
Confidence 899999999999987 8999999987532 1 1123699998 677654 234888888865
No 135
>PTZ00062 glutaredoxin; Provisional
Probab=97.44 E-value=0.001 Score=54.87 Aligned_cols=75 Identities=8% Similarity=0.077 Sum_probs=56.9
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEe-cCCCH
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM-ACINR 124 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~-grfd~ 124 (158)
...|..|+.+||+.|....++|.++. .++.++.|-.||.+ |+. .||.++. ..||+++.. -+.++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~-----~~~~~~~F~~V~~d--------~~V~~vPtfv~-~~~g~~i~r~~G~~~ 83 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALV-----EDFPSLEFYVVNLA--------DANNEYGVFEF-YQNSQLINSLEGCNT 83 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHH-----HHCCCcEEEEEccc--------cCcccceEEEE-EECCEEEeeeeCCCH
Confidence 45688888999999999999999984 34456888888865 886 5997763 368886542 23788
Q ss_pred HHHHHHHHhcC
Q 031531 125 FRIEAWLSQMS 135 (158)
Q Consensus 125 d~L~~~L~~~~ 135 (158)
.+|.+++.+..
T Consensus 84 ~~~~~~~~~~~ 94 (204)
T PTZ00062 84 STLVSFIRGWA 94 (204)
T ss_pred HHHHHHHHHHc
Confidence 88888887654
No 136
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.42 E-value=0.0013 Score=52.29 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=51.0
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC---CHHHHHhcC-CccceEEEeccCCeEEEecCCCH
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQ-YEIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~---d~el~ekyg-~~VPVL~i~~idGe~i~~grfd~ 124 (158)
.++||+.++|+.|..+.-.|++. |++|+.+.|+- .+++.+..- -.||+|+ .||..+. .-
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~---~~g~~l~----ES 72 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEK----------GVSVEIEQVEKDNLPQDLIDLNPYQSVPTLV---DRELTLY----ES 72 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHC----------CCCCEEEeCCcccCCHHHHHhCCCCCCCEEE---ECCEEee----CH
Confidence 47999999999999999999887 78888888763 234444322 3699998 5776553 34
Q ss_pred HHHHHHHHhc
Q 031531 125 FRIEAWLSQM 134 (158)
Q Consensus 125 d~L~~~L~~~ 134 (158)
..|.++|.+.
T Consensus 73 ~AIl~YL~~~ 82 (211)
T PRK09481 73 RIIMEYLDER 82 (211)
T ss_pred HHHHHHHHHh
Confidence 7788887655
No 137
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.42 E-value=0.00077 Score=61.83 Aligned_cols=85 Identities=11% Similarity=0.152 Sum_probs=61.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH-HHH-HhcCC-ccceEEEeccCCe--EEEe-
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-EWE-KSYQY-EIPVLARVLSDGT--EVLM- 119 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~-el~-ekyg~-~VPVL~i~~idGe--~i~~- 119 (158)
..+-++.|..|||+.|...+..++++.. .....++.+-.+|++.++ ++. ++|+. .+|+++.- .+|. .+.+
T Consensus 371 ~k~VLV~FyApWC~~Ck~m~P~~eelA~---~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~F-k~g~~~~~~Y~ 446 (463)
T TIGR00424 371 KEAWLVVLYAPWCPFCQAMEASYLELAE---KLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFF-PKHSSRPIKYP 446 (463)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHH---HhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEE-ECCCCCceeCC
Confidence 3456889999999999999999988742 112235889999999764 444 57886 69998853 4554 2334
Q ss_pred -cCCCHHHHHHHHHhc
Q 031531 120 -ACINRFRIEAWLSQM 134 (158)
Q Consensus 120 -grfd~d~L~~~L~~~ 134 (158)
|..+.+.|.++++..
T Consensus 447 ~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 447 SEKRDVDSLMSFVNLL 462 (463)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 357889998888754
No 138
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.41 E-value=0.0019 Score=51.07 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=55.2
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHH----HH-------------------hcCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW----EK-------------------SYQY 102 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el----~e-------------------kyg~ 102 (158)
..+-|..|+.+||+.|.+....|.++. ..++++--|+++++++. .+ .||.
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~-------~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLS-------AQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHH-------HcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 445688899999999999999998873 23788888887765531 11 2342
Q ss_pred -ccceEEEeccCCeEE--EecCCCHHHHHHHHHh
Q 031531 103 -EIPVLARVLSDGTEV--LMACINRFRIEAWLSQ 133 (158)
Q Consensus 103 -~VPVL~i~~idGe~i--~~grfd~d~L~~~L~~ 133 (158)
.+|..++...+|+.. ..|..+++++++.++.
T Consensus 141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 478655433467643 3466888888777654
No 139
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.38 E-value=0.00098 Score=48.63 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=48.8
Q ss_pred CCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CCHHHHHhcC--CccceEEEeccCCeEEEecCCCHHHHHHHH
Q 031531 56 PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQ--YEIPVLARVLSDGTEVLMACINRFRIEAWL 131 (158)
Q Consensus 56 pgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d~el~ekyg--~~VPVL~i~~idGe~i~~grfd~d~L~~~L 131 (158)
..|++|+++.-.|.++ +++|+.++|+ ..|+++.+.. -.||+|. .+|..+ ++.+.|.++|
T Consensus 20 g~cpf~~rvrl~L~eK----------gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~---~~~~~i----~eS~~I~eYL 82 (91)
T cd03061 20 GNCPFCQRLFMVLWLK----------GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL---YNGEVK----TDNNKIEEFL 82 (91)
T ss_pred CCChhHHHHHHHHHHC----------CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE---ECCEEe----cCHHHHHHHH
Confidence 5799999999999997 7888877776 4566666654 2599998 566555 5779999999
Q ss_pred HhcC
Q 031531 132 SQMS 135 (158)
Q Consensus 132 ~~~~ 135 (158)
++..
T Consensus 83 de~~ 86 (91)
T cd03061 83 EETL 86 (91)
T ss_pred HHHc
Confidence 8753
No 140
>PLN02309 5'-adenylylsulfate reductase
Probab=97.35 E-value=0.0013 Score=60.27 Aligned_cols=86 Identities=12% Similarity=0.179 Sum_probs=63.1
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC-CCHHHHH-hcCC-ccceEEEeccCCe--EEEe
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-TNPEWEK-SYQY-EIPVLARVLSDGT--EVLM 119 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId-~d~el~e-kyg~-~VPVL~i~~idGe--~i~~ 119 (158)
.....++.|..|||+.|...+..++++.. .....++.+-.+|++ ++.++.. +|+. ++|+++.- .+|. .+.+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~---~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f-~~g~~~~v~Y 439 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAE---KLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLF-PKNSSRPIKY 439 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHH---HhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEE-eCCCCCeeec
Confidence 34557899999999999999999988741 122346899999999 6677765 5886 69999853 4443 2333
Q ss_pred --cCCCHHHHHHHHHhc
Q 031531 120 --ACINRFRIEAWLSQM 134 (158)
Q Consensus 120 --grfd~d~L~~~L~~~ 134 (158)
+.-+.+.|.+|+.+.
T Consensus 440 ~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 440 PSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCCcCHHHHHHHHHHh
Confidence 247889999998764
No 141
>PRK10387 glutaredoxin 2; Provisional
Probab=97.33 E-value=0.0012 Score=51.74 Aligned_cols=69 Identities=14% Similarity=0.357 Sum_probs=50.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHH--HHhcC-CccceEEEeccCCeEEEecCCCHHH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW--EKSYQ-YEIPVLARVLSDGTEVLMACINRFR 126 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el--~ekyg-~~VPVL~i~~idGe~i~~grfd~d~ 126 (158)
++||+.+.||+|.+++-.|+.. |++|+.++++..+.. .+..+ ..||||+. .||..+ .+-..
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~----------gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~--~~g~~l----~eS~a 64 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLK----------NIPVELIVLANDDEATPIRMIGQKQVPILQK--DDGSYM----PESLD 64 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHc----------CCCeEEEEcCCCchhhHHHhcCCcccceEEe--cCCeEe----cCHHH
Confidence 4799999999999999999887 899999988643321 22222 36999951 356544 35578
Q ss_pred HHHHHHhc
Q 031531 127 IEAWLSQM 134 (158)
Q Consensus 127 L~~~L~~~ 134 (158)
|.++|++.
T Consensus 65 I~~yL~~~ 72 (210)
T PRK10387 65 IVHYIDEL 72 (210)
T ss_pred HHHHHHHh
Confidence 88888665
No 142
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.33 E-value=0.00022 Score=52.94 Aligned_cols=35 Identities=17% Similarity=0.461 Sum_probs=32.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
|++|+.|+|.-|.+|+++|++. +++|+++|+.+++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~----------~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA----------GIEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC----------CCCeEEEecccCC
Confidence 5799999999999999999997 8999999998654
No 143
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.31 E-value=0.0013 Score=48.00 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=29.6
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId 91 (158)
...+-+..|..+||+.|......|+++.. ..++.+..|+++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~------~~~~~vv~v~~~ 64 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALAR------QGRVPIYGINYK 64 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHH------hcCcEEEEEECC
Confidence 34567888899999999999999988742 224555555543
No 144
>PRK15113 glutathione S-transferase; Provisional
Probab=97.31 E-value=0.0018 Score=51.69 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=48.8
Q ss_pred CCceEEEEeCC--CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CC----HHHHHhcC-CccceEEEeccCCeE
Q 031531 46 STRKLVLYSKP--GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQ-YEIPVLARVLSDGTE 116 (158)
Q Consensus 46 ~~~~VtLYTkp--gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d----~el~ekyg-~~VPVL~i~~idGe~ 116 (158)
+.+.++||+.+ .|++|.++.-+|++. |++|+.+.++ +. +++.+..- -.||+|. .||..
T Consensus 2 ~~~~~~Ly~~~~~~s~~~~rv~~~l~e~----------gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~---~~~~~ 68 (214)
T PRK15113 2 SKPAITLYSDAHFFSPYVMSAFVALQEK----------GLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQ---HDDFE 68 (214)
T ss_pred CCCeEEEEeCCCCCCchHHHHHHHHHHc----------CCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEE---ECCEE
Confidence 45668999976 699999999999987 7777777766 22 33433222 2699998 57765
Q ss_pred EEecCCCHHHHHHHHHhc
Q 031531 117 VLMACINRFRIEAWLSQM 134 (158)
Q Consensus 117 i~~grfd~d~L~~~L~~~ 134 (158)
+. +-..|.++|.+.
T Consensus 69 l~----ES~aI~~YL~~~ 82 (214)
T PRK15113 69 LS----ESSAIAEYLEER 82 (214)
T ss_pred Ee----cHHHHHHHHHHH
Confidence 53 335566655543
No 145
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.30 E-value=0.0018 Score=42.53 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=44.6
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC------CHHHHHhcC-CccceEEEeccCCeEEEecCCC
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQ-YEIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~------d~el~ekyg-~~VPVL~i~~idGe~i~~grfd 123 (158)
+||+.+.|+.|..++.+|+.. |++|+.++++- .+++.+... ..+|++. .+|..+. +
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~----------gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~---~~~~~l~----e 64 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLK----------GLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV---IDGLVLT----Q 64 (73)
T ss_pred EEecCCCCcchHHHHHHHHHc----------CCCCeEEEecCccCCcCChHHHHhCCCCCCCEEE---ECCEEEE----c
Confidence 799999999999999999887 77777766652 233444333 3699998 5665442 3
Q ss_pred HHHHHHHH
Q 031531 124 RFRIEAWL 131 (158)
Q Consensus 124 ~d~L~~~L 131 (158)
-..|.++|
T Consensus 65 s~aI~~yL 72 (73)
T cd03042 65 SLAIIEYL 72 (73)
T ss_pred HHHHHHHh
Confidence 46666665
No 146
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00077 Score=50.87 Aligned_cols=75 Identities=23% Similarity=0.335 Sum_probs=55.2
Q ss_pred CCceEEEEe-----CCCCCchHHHHHHHHHhhccCCCCCCCC-cceEEEEcCCCHHHHHh---cC--CccceEEEeccCC
Q 031531 46 STRKLVLYS-----KPGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKS---YQ--YEIPVLARVLSDG 114 (158)
Q Consensus 46 ~~~~VtLYT-----kpgC~lC~~aK~~L~~~~~~~~~~~~~~-I~~eeIDId~d~el~ek---yg--~~VPVL~i~~idG 114 (158)
+..+|.||- .|.|++-.++-++|... + ++|..+||-+|+++++. |. -++|.|. +||
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~----------g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLy---i~G 79 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSAC----------GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLY---VNG 79 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHHc----------CCcceeEEeeccCHHHHhccHhhcCCCCCceee---ECC
Confidence 345677885 47899999999999987 6 89999999999999875 43 3799999 899
Q ss_pred eEEEec-----CCCHHHHHHHHHh
Q 031531 115 TEVLMA-----CINRFRIEAWLSQ 133 (158)
Q Consensus 115 e~i~~g-----rfd~d~L~~~L~~ 133 (158)
+.+.-. -|...+|.+.|.+
T Consensus 80 EfvGG~DIv~Em~q~GELq~~l~~ 103 (105)
T COG0278 80 EFVGGCDIVREMYQSGELQTLLKE 103 (105)
T ss_pred EEeccHHHHHHHHHcchHHHHHHh
Confidence 855322 1233455555544
No 147
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.26 E-value=0.0021 Score=48.94 Aligned_cols=87 Identities=11% Similarity=0.222 Sum_probs=58.9
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH----------------------HHHHhcCC
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----------------------EWEKSYQY 102 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~----------------------el~ekyg~ 102 (158)
...+.+..|..+||+.|......|.++.. .....++.+-.++.++++ ++.++|+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~---~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 136 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYP---KYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHH---HhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence 34557788889999999998888877631 112235777777776443 44566775
Q ss_pred -ccceEEEeccCCeEE--EecCCCHHHHHHHHHhc
Q 031531 103 -EIPVLARVLSDGTEV--LMACINRFRIEAWLSQM 134 (158)
Q Consensus 103 -~VPVL~i~~idGe~i--~~grfd~d~L~~~L~~~ 134 (158)
.+|.+++...+|+.+ ..|..+++++.++|++.
T Consensus 137 ~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 137 GPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 578766543467754 25668889999998864
No 148
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.26 E-value=0.0028 Score=49.46 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=54.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC-----------------------CHHHHHhcCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----------------------NPEWEKSYQY 102 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~-----------------------d~el~ekyg~ 102 (158)
...-+..|+.+||+.|.+....|+++.. .++.+-.|+.++ +.++.+.|+.
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~-------~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAK-------DGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHH-------cCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 4567888899999999999999988731 245555555543 2233444553
Q ss_pred -ccceEEEeccCCeEEE--ecCCCHHHHHHHHHhc
Q 031531 103 -EIPVLARVLSDGTEVL--MACINRFRIEAWLSQM 134 (158)
Q Consensus 103 -~VPVL~i~~idGe~i~--~grfd~d~L~~~L~~~ 134 (158)
.+|..++...||+... .|..+++++.++|++.
T Consensus 136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 5895554334687543 4668899998888764
No 149
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.22 E-value=0.0019 Score=55.79 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=63.6
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCC--CCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeE----EE
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL--HDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE----VL 118 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~--~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~----i~ 118 (158)
...-+..|..+||+.|......++++.. .... .++.+-.+|++.|+-.. ++. .+|.++.- .+|.. ..
T Consensus 364 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~---~~~~~~~~i~~~~id~~~n~~~~--~~i~~~Pt~~~~-~~~~~~~~~~~ 437 (462)
T TIGR01130 364 TKDVLVEFYAPWCGHCKNLAPIYEELAE---KYKDAESDVVIAKMDATANDVPP--FEVEGFPTIKFV-PAGKKSEPVPY 437 (462)
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHH---HhhcCCCcEEEEEEECCCCccCC--CCccccCEEEEE-eCCCCcCceEe
Confidence 3456888999999999999999988742 1222 26889999998876332 664 68998853 34432 34
Q ss_pred ecCCCHHHHHHHHHhcCCCc
Q 031531 119 MACINRFRIEAWLSQMSLDC 138 (158)
Q Consensus 119 ~grfd~d~L~~~L~~~~l~~ 138 (158)
.|..+.+.|.++|.+.+...
T Consensus 438 ~g~~~~~~l~~~l~~~~~~~ 457 (462)
T TIGR01130 438 DGDRTLEDFSKFIAKHATFP 457 (462)
T ss_pred cCcCCHHHHHHHHHhcCCCC
Confidence 56789999999999988654
No 150
>PRK10853 putative reductase; Provisional
Probab=97.21 E-value=0.00035 Score=52.79 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=32.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
+++|+.|+|.-|.+|+++|++. +++|+.+|+.+++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~----------~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ----------GIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc----------CCCcEEeehccCC
Confidence 8999999999999999999987 8999999998654
No 151
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.21 E-value=0.0021 Score=54.91 Aligned_cols=80 Identities=9% Similarity=0.078 Sum_probs=64.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC-----------HHHHHhcCC-ccceEEEeccCC-
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----------PEWEKSYQY-EIPVLARVLSDG- 114 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d-----------~el~ekyg~-~VPVL~i~~idG- 114 (158)
-.+.+|.+..|++|++.-.+|+.+ .+.+||++..|++|.. ....+++|. .+|.++.+..++
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~f------a~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAF------AKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHH------HHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCC
Confidence 458889999999999999999998 3567999999999953 457788886 589999765553
Q ss_pred e--EEEecCCCHHHHHHHHHh
Q 031531 115 T--EVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 115 e--~i~~grfd~d~L~~~L~~ 133 (158)
+ .+.+|..+.++|.+-+..
T Consensus 226 ~~~pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 226 KMSPLAYGFISQDELKERILN 246 (256)
T ss_pred cEEEEeeccCCHHHHHHHHHH
Confidence 3 466899999999876644
No 152
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.21 E-value=0.002 Score=42.92 Aligned_cols=66 Identities=21% Similarity=0.094 Sum_probs=46.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHH---HHhcC--CccceEEEeccCCeEEEecCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW---EKSYQ--YEIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el---~ekyg--~~VPVL~i~~idGe~i~~grfd~ 124 (158)
++||..+.|+.|..++-.|+.. |++|+.++++..+.. ..+.+ ..+|++. .+|..+. +.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~----------gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~---~~~~~l~----es 63 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADA----------GVEYEDVRITYEEWPELDLKPTLPFGQLPVLE---IDGKKLT----QS 63 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHC----------CCCcEEEEeCHHHhhhhhhccCCcCCCCCEEE---ECCEEEE----ec
Confidence 3789999999999999999997 888988888742211 12222 3699998 5675553 33
Q ss_pred HHHHHHHH
Q 031531 125 FRIEAWLS 132 (158)
Q Consensus 125 d~L~~~L~ 132 (158)
..|.++|.
T Consensus 64 ~aI~~yL~ 71 (72)
T cd03039 64 NAILRYLA 71 (72)
T ss_pred HHHHHHhh
Confidence 67777765
No 153
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.19 E-value=0.0043 Score=41.84 Aligned_cols=66 Identities=20% Similarity=0.379 Sum_probs=46.7
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC-----HHHHHhcC-CccceEEEecc-CCeEEEecCCC
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----PEWEKSYQ-YEIPVLARVLS-DGTEVLMACIN 123 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d-----~el~ekyg-~~VPVL~i~~i-dGe~i~~grfd 123 (158)
+||+.++|+.|..++-.|+.. +++|+.++++-. +++.+..- ..+|++. . ||..+ .+
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~----------gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~---~~~g~~l----~e 64 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYN----------GLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFE---GADGFCL----FE 64 (75)
T ss_pred eEecCCCCccHHHHHHHHHHc----------CCceEEEecccccccCCHHHHHhCCCCCCCEEE---cCCCCEE----ee
Confidence 589999999999999999887 677777766632 33333322 3699998 4 46555 34
Q ss_pred HHHHHHHHHh
Q 031531 124 RFRIEAWLSQ 133 (158)
Q Consensus 124 ~d~L~~~L~~ 133 (158)
...|.++|.+
T Consensus 65 s~aI~~yL~~ 74 (75)
T cd03044 65 SNAIAYYVAN 74 (75)
T ss_pred HHHHHHHHhh
Confidence 4778777754
No 154
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.16 E-value=0.0039 Score=41.89 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=47.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CC----HHHHHhcC-CccceEEEeccCCeEEEecCC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQ-YEIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d----~el~ekyg-~~VPVL~i~~idGe~i~~grf 122 (158)
++||+.++++.|.++.-.|+.. |++|+.+.++ +. +++.+... ..||++. .+|..+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~----------g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~---~~~~~l~---- 63 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLN----------KIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIV---DGDFTLA---- 63 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHc----------CCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEE---ECCEEEE----
Confidence 4799999999999999999887 7777776665 22 23333333 3699998 5675542
Q ss_pred CHHHHHHHHHh
Q 031531 123 NRFRIEAWLSQ 133 (158)
Q Consensus 123 d~d~L~~~L~~ 133 (158)
+-..|.++|.+
T Consensus 64 eS~aI~~Yl~~ 74 (76)
T cd03050 64 ESVAILRYLAR 74 (76)
T ss_pred cHHHHHHHHHh
Confidence 34778787765
No 155
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.14 E-value=0.0032 Score=58.57 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=62.5
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEE----------------------------EEcCCCHHH
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQV----------------------------RDITTNPEW 96 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~ee----------------------------IDId~d~el 96 (158)
...+-++.|..+||+.|.+....|+++.. .....++.+.. +++|.+.++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~---e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQ---DAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHH---HhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 44567889999999999999999988742 11122344332 344556667
Q ss_pred HHhcCC-ccceEEEeccCCeEE--EecCCCHHHHHHHHHhcCC
Q 031531 97 EKSYQY-EIPVLARVLSDGTEV--LMACINRFRIEAWLSQMSL 136 (158)
Q Consensus 97 ~ekyg~-~VPVL~i~~idGe~i--~~grfd~d~L~~~L~~~~l 136 (158)
.+.|+. .+|.+++...+|+.. ..|..+.++|+++|+....
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~~ 174 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPNA 174 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhhh
Confidence 778885 699996544578754 4688999999999985554
No 156
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.13 E-value=0.0016 Score=47.92 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=45.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCC-CCcceEEEEcC--CCHHHHHhcCC-ccceEEE
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL-HDVDLQVRDIT--TNPEWEKSYQY-EIPVLAR 109 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~-~~I~~eeIDId--~d~el~ekyg~-~VPVL~i 109 (158)
..-+..|+.+||+.|...+..++++.. ..... ..+.+-.+|.+ +++++.++|+. .+|.+++
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~--~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLAR--DLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHH--HHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE
Confidence 467889999999999999999988631 00111 23778888865 46678889986 5999885
No 157
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.13 E-value=0.0024 Score=49.68 Aligned_cols=101 Identities=9% Similarity=0.033 Sum_probs=73.9
Q ss_pred ceeccccccCcCCCCCCCCceEEEEeCCC--CCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccc
Q 031531 29 WGFSPLAYSSSSSSSSSSTRKLVLYSKPG--CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIP 105 (158)
Q Consensus 29 ~~~~~~~~~~~~s~~~~~~~~VtLYTkpg--C~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VP 105 (158)
+|+.++.+.+...=-....-.+.+++.+. ++=+...--+|+++.. ......+.+-++|+++++++..+||. .+|
T Consensus 17 ~g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~---e~~~~~v~~akVDiD~~~~LA~~fgV~siP 93 (132)
T PRK11509 17 RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLR---EFPDYTWQVAIADLEQSEAIGDRFGVFRFP 93 (132)
T ss_pred cCCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHH---HhcCCceEEEEEECCCCHHHHHHcCCccCC
Confidence 47888888666422233334677777554 7888888889988741 11112388999999999999999996 699
Q ss_pred eEEEeccCCeEEE--ecCCCHHHHHHHHHh
Q 031531 106 VLARVLSDGTEVL--MACINRFRIEAWLSQ 133 (158)
Q Consensus 106 VL~i~~idGe~i~--~grfd~d~L~~~L~~ 133 (158)
.++. +.||+.+. .|..+.+++.++|++
T Consensus 94 TLl~-FkdGk~v~~i~G~~~k~~l~~~I~~ 122 (132)
T PRK11509 94 ATLV-FTGGNYRGVLNGIHPWAELINLMRG 122 (132)
T ss_pred EEEE-EECCEEEEEEeCcCCHHHHHHHHHH
Confidence 9984 47998653 476788999998875
No 158
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.12 E-value=0.0024 Score=43.48 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=35.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN 93 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d 93 (158)
.+..+.+|..+||+.|......|.++.. .....++.+..|+++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~---~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAK---EYKDDGVEVVGVNVDDD 63 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHH---HhCCCCeEEEEEECCCC
Confidence 4567889999999999999888888742 12235789999999985
No 159
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=97.11 E-value=0.002 Score=53.24 Aligned_cols=75 Identities=20% Similarity=0.358 Sum_probs=47.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC-------C----CHHHH-------HhcCC-c--cceEE
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------T----NPEWE-------KSYQY-E--IPVLA 108 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId-------~----d~el~-------ekyg~-~--VPVL~ 108 (158)
|.|||..||.-|--|-++|.++.. ..++----..|| + ++++- +.++. . .|.++
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~------~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v 75 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAA------RPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV 75 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHH------HTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhc------CCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence 789999999999999999999852 123322233344 2 33322 22343 2 69999
Q ss_pred EeccCCeEEEecCCCHHHHHHHHHhc
Q 031531 109 RVLSDGTEVLMACINRFRIEAWLSQM 134 (158)
Q Consensus 109 i~~idGe~i~~grfd~d~L~~~L~~~ 134 (158)
+||++...| ++++++..++++.
T Consensus 76 ---VnG~~~~~g-~~~~~~~~ai~~~ 97 (202)
T PF06764_consen 76 ---VNGREHRVG-SDRAAVEAAIQAA 97 (202)
T ss_dssp ---ETTTEEEET-T-HHHHHHHHHHH
T ss_pred ---ECCeeeeec-cCHHHHHHHHHHh
Confidence 899988777 8999888888665
No 160
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.09 E-value=0.0031 Score=53.70 Aligned_cols=81 Identities=7% Similarity=0.046 Sum_probs=63.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC-----------CHHHHHhcCC-ccceEEEeccCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----------NPEWEKSYQY-EIPVLARVLSDG 114 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~-----------d~el~ekyg~-~VPVL~i~~idG 114 (158)
.-.+.+|.+..|++|++.-.+|+.+ .+.+||++..|.+|. |....+++|. .+|.++.+..++
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~f------a~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDF------RDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKS 217 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHH------HHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCC
Confidence 3568899999999999999999998 356799999999985 3345667775 589999765554
Q ss_pred -e--EEEecCCCHHHHHHHHHh
Q 031531 115 -T--EVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 115 -e--~i~~grfd~d~L~~~L~~ 133 (158)
+ .+.+|..+.++|.+-+..
T Consensus 218 ~~~~pv~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 218 GSVRPLSYGFITQDDLAKRFLN 239 (248)
T ss_pred CcEEEEeeccCCHHHHHHHHHH
Confidence 3 467898999999877654
No 161
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.08 E-value=0.0035 Score=47.61 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=58.9
Q ss_pred eEEEEeC--CCCC---chHHHHHHHHHhhccCCCCCCCCcceEEEEc-----CCCHHHHHhcCC---ccceEEEeccCCe
Q 031531 49 KLVLYSK--PGCC---LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI-----TTNPEWEKSYQY---EIPVLARVLSDGT 115 (158)
Q Consensus 49 ~VtLYTk--pgC~---lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDI-----d~d~el~ekyg~---~VPVL~i~~idGe 115 (158)
-++-|.. |||+ .|+++.....+.. ..+.+-+||+ +++.+|.++|+. +.|+|.. ..+|+
T Consensus 21 vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa--------~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~l-F~~g~ 91 (116)
T cd03007 21 SLVKFDTAYPYGEKHEAFTRLAESSASAT--------DDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYL-FHGGD 91 (116)
T ss_pred EEEEEeCCCCCCCChHHHHHHHHHHHhhc--------CceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEE-EeCCC
Confidence 4677888 9999 8988887776642 1488999999 457789999997 5999874 35674
Q ss_pred ----EEEecC-CCHHHHHHHHHhc
Q 031531 116 ----EVLMAC-INRFRIEAWLSQM 134 (158)
Q Consensus 116 ----~i~~gr-fd~d~L~~~L~~~ 134 (158)
..+.|. .+.+.|.+|+.+.
T Consensus 92 ~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 92 FENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCccCCCCcccHHHHHHHHHhc
Confidence 234564 8889999999875
No 162
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.07 E-value=0.006 Score=43.87 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=50.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEc-----------------------CCCHHHHHhcCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI-----------------------TTNPEWEKSYQY 102 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDI-----------------------d~d~el~ekyg~ 102 (158)
.+..+..|..+||+.|....+.|.++.. .+++..|.. +.+.++.++|+.
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~--------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 91 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAA--------DYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGV 91 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHh--------hCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCC
Confidence 3567888999999999999999987631 133333332 234456677775
Q ss_pred -ccceEEEeccCCe-EEEecCCCHHHHHHH
Q 031531 103 -EIPVLARVLSDGT-EVLMACINRFRIEAW 130 (158)
Q Consensus 103 -~VPVL~i~~idGe-~i~~grfd~d~L~~~ 130 (158)
.+|.+++...+|. ....|..++++|++.
T Consensus 92 ~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 92 SVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 5898876433441 124567888888765
No 163
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.07 E-value=0.0039 Score=42.19 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=46.7
Q ss_pred EEEEeCCC-------CCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcC-CccceEEEeccCCeEEEecC
Q 031531 50 LVLYSKPG-------CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ-YEIPVLARVLSDGTEVLMAC 121 (158)
Q Consensus 50 VtLYTkpg-------C~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg-~~VPVL~i~~idGe~i~~gr 121 (158)
++||..++ |++|.+++..|+.. +++|+.++++.. +.-. ..||++. .+|+.+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~----------gi~~~~~~~~~~----~~~p~g~vPvl~---~~g~~l---- 60 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMA----------GIPYENKFGGLA----KRSPKGKLPFIE---LNGEKI---- 60 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHC----------CCCcEEeecCcc----cCCCCCCCCEEE---ECCEEE----
Confidence 68888884 69999999999987 788888877531 1112 3599998 577654
Q ss_pred CCHHHHHHHHHh
Q 031531 122 INRFRIEAWLSQ 133 (158)
Q Consensus 122 fd~d~L~~~L~~ 133 (158)
.+...|.++|++
T Consensus 61 ~eS~~I~~yL~~ 72 (75)
T cd03080 61 ADSELIIDHLEE 72 (75)
T ss_pred cCHHHHHHHHHH
Confidence 355888888875
No 164
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.99 E-value=0.0083 Score=40.74 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=46.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--C----CHHHHHhcC-CccceEEEeccC---CeEEEe
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T----NPEWEKSYQ-YEIPVLARVLSD---GTEVLM 119 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~----d~el~ekyg-~~VPVL~i~~id---Ge~i~~ 119 (158)
++||+.++ +.|.++.-.|+.. +++|+.+.++ . .+++.+... ..||++. .+ |..+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~----------gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~---~~~~~g~~l-- 65 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEEL----------GLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIV---DHNGTPLTV-- 65 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHc----------CCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEE---eCCCCceEE--
Confidence 68999997 9999999999997 6766665554 2 233443332 3699998 44 5544
Q ss_pred cCCCHHHHHHHHHhc
Q 031531 120 ACINRFRIEAWLSQM 134 (158)
Q Consensus 120 grfd~d~L~~~L~~~ 134 (158)
.+-..|.++|.+.
T Consensus 66 --~eS~aI~~yL~~~ 78 (81)
T cd03048 66 --FESGAILLYLAEK 78 (81)
T ss_pred --EcHHHHHHHHHHH
Confidence 3457888888753
No 165
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.98 E-value=0.0058 Score=41.04 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=43.6
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--C----CHHHHHhcC-CccceEEEeccC-CeEEEecCC
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T----NPEWEKSYQ-YEIPVLARVLSD-GTEVLMACI 122 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~----d~el~ekyg-~~VPVL~i~~id-Ge~i~~grf 122 (158)
+||+.++|+ |.+++-.|+.. +++|+.++++ + .+++.+... ..||++. .+ |..+ +
T Consensus 2 ~Ly~~~~~~-~~~v~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~---~~~g~~l----~ 63 (77)
T cd03057 2 KLYYSPGAC-SLAPHIALEEL----------GLPFELVRVDLRTKTQKGADYLAINPKGQVPALV---LDDGEVL----T 63 (77)
T ss_pred EEEeCCCCc-hHHHHHHHHHc----------CCCceEEEEecccCccCCHhHHHhCCCCCCCEEE---ECCCcEE----E
Confidence 689989874 87888888776 6666665554 2 344554433 3699998 45 6545 3
Q ss_pred CHHHHHHHHHh
Q 031531 123 NRFRIEAWLSQ 133 (158)
Q Consensus 123 d~d~L~~~L~~ 133 (158)
+-..|.++|.+
T Consensus 64 eS~aI~~yL~~ 74 (77)
T cd03057 64 ESAAILQYLAD 74 (77)
T ss_pred cHHHHHHHHHH
Confidence 45788888865
No 166
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.98 E-value=0.0038 Score=50.05 Aligned_cols=68 Identities=15% Similarity=0.332 Sum_probs=48.9
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH--HHHHhc-CCccceEEEeccCCeEEEecCCCHHHH
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSY-QYEIPVLARVLSDGTEVLMACINRFRI 127 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~--el~eky-g~~VPVL~i~~idGe~i~~grfd~d~L 127 (158)
+||+.+.||+|.+++-.|+.+ |++|+.+++..++ ...+.. ...||++.. .||..+ .+...|
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~----------gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~--~~g~~l----~es~~I 64 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLK----------NIPVEKHVLLNDDEETPIRMIGAKQVPILQK--DDGRAM----PESLDI 64 (209)
T ss_pred CeecCCCCChHHHHHHHHHHc----------CCCeEEEECCCCcchhHHHhcCCCCcceEEe--eCCeEe----ccHHHH
Confidence 589999999999999999997 8999999886543 222222 246999962 356544 345778
Q ss_pred HHHHHhc
Q 031531 128 EAWLSQM 134 (158)
Q Consensus 128 ~~~L~~~ 134 (158)
.++|.+.
T Consensus 65 ~~yL~~~ 71 (209)
T TIGR02182 65 VAYFDKL 71 (209)
T ss_pred HHHHHHh
Confidence 8888764
No 167
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.88 E-value=0.007 Score=40.79 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=47.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC--HHHHHhcC--CccceEEEeccCCeEEEecCCCHH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN--PEWEKSYQ--YEIPVLARVLSDGTEVLMACINRF 125 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d--~el~ekyg--~~VPVL~i~~idGe~i~~grfd~d 125 (158)
++||..+.|+.|..+.-.|+.. +++|+.+.++-+ .+...+.+ ..||++. .||..+ .+..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~----------~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~---~~~~~l----~es~ 64 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQ----------GISWEEERVTYEEWQESLKPKMLFGQLPCFK---DGDLTL----VQSN 64 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHc----------CCCCEEEEecHHHhhhhhhccCCCCCCCEEE---ECCEEE----EcHH
Confidence 5799999999999999999987 788888877632 11122233 2599998 566544 3457
Q ss_pred HHHHHHHh
Q 031531 126 RIEAWLSQ 133 (158)
Q Consensus 126 ~L~~~L~~ 133 (158)
.|.++|.+
T Consensus 65 aI~~yL~~ 72 (73)
T cd03076 65 AILRHLGR 72 (73)
T ss_pred HHHHHHhc
Confidence 88887754
No 168
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.87 E-value=0.0099 Score=47.33 Aligned_cols=76 Identities=16% Similarity=0.299 Sum_probs=60.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-----ccceEEEeccCCeEEEec
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-----EIPVLARVLSDGTEVLMA 120 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-----~VPVL~i~~idGe~i~~g 120 (158)
...++++|-.|+|+-|++=-+.|+.. +|+...+..++-..+.+++|. +==+.+ +||..+ .|
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~----------Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V---I~Gy~v-EG 89 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKAN----------GFEVKVVETDDFLALKRRLGIPYEMQSCHTAV---INGYYV-EG 89 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhC----------CcEEEEeecCcHHHHHHhcCCChhhccccEEE---EcCEEE-ec
Confidence 45568999999999999999999876 899998888777778888763 234555 799866 55
Q ss_pred CCCHHHHHHHHHhcC
Q 031531 121 CINRFRIEAWLSQMS 135 (158)
Q Consensus 121 rfd~d~L~~~L~~~~ 135 (158)
....++|+++|++.-
T Consensus 90 HVPa~aI~~ll~~~p 104 (149)
T COG3019 90 HVPAEAIARLLAEKP 104 (149)
T ss_pred cCCHHHHHHHHhCCC
Confidence 599999999998765
No 169
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.81 E-value=0.0045 Score=42.52 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=42.5
Q ss_pred CCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CCHHHHH--hcC--CccceEEEeccC-CeEEEecCCCHHHHH
Q 031531 56 PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEK--SYQ--YEIPVLARVLSD-GTEVLMACINRFRIE 128 (158)
Q Consensus 56 pgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d~el~e--kyg--~~VPVL~i~~id-Ge~i~~grfd~d~L~ 128 (158)
++|++|.++.-.|... +++|+.+.++ +.+.... +.+ ..||++. .+ |..+ ++...|.
T Consensus 14 ~~Sp~~~kv~~~L~~~----------~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~---~~~~~~l----~eS~aI~ 76 (84)
T cd03038 14 AFSPNVWKTRLALNHK----------GLEYKTVPVEFPDIPPILGELTSGGFYTVPVIV---DGSGEVI----GDSFAIA 76 (84)
T ss_pred CcCChhHHHHHHHHhC----------CCCCeEEEecCCCcccccccccCCCCceeCeEE---ECCCCEE----eCHHHHH
Confidence 6799999999999887 7777776665 2222222 222 3699998 45 6554 4668888
Q ss_pred HHHHhc
Q 031531 129 AWLSQM 134 (158)
Q Consensus 129 ~~L~~~ 134 (158)
++|++.
T Consensus 77 ~yL~~~ 82 (84)
T cd03038 77 EYLEEA 82 (84)
T ss_pred HHHHHh
Confidence 888753
No 170
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0065 Score=52.65 Aligned_cols=83 Identities=8% Similarity=0.148 Sum_probs=67.2
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCc-cceEEEeccCCeEEE-ecCCCHH
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEVL-MACINRF 125 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~-VPVL~i~~idGe~i~-~grfd~d 125 (158)
.-++-||..||++|...-.+++.+. ..+.+.-|-+||+++-.+..+.+|.. .|+.+ ...||..+. +-+=|+.
T Consensus 23 ~v~Vdfta~wCGPCk~IaP~Fs~la-----nkYp~aVFlkVdVd~c~~taa~~gV~amPTFi-ff~ng~kid~~qGAd~~ 96 (288)
T KOG0908|consen 23 LVVVDFTASWCGPCKRIAPIFSDLA-----NKYPGAVFLKVDVDECRGTAATNGVNAMPTFI-FFRNGVKIDQIQGADAS 96 (288)
T ss_pred EEEEEEEecccchHHhhhhHHHHhh-----hhCcccEEEEEeHHHhhchhhhcCcccCceEE-EEecCeEeeeecCCCHH
Confidence 4578899999999999999999984 57889999999999988888899975 68765 457887654 2337888
Q ss_pred HHHHHHHhcCC
Q 031531 126 RIEAWLSQMSL 136 (158)
Q Consensus 126 ~L~~~L~~~~l 136 (158)
.|++.+++..-
T Consensus 97 gLe~kv~~~~s 107 (288)
T KOG0908|consen 97 GLEEKVAKYAS 107 (288)
T ss_pred HHHHHHHHHhc
Confidence 88888876544
No 171
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.74 E-value=0.018 Score=41.78 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=56.9
Q ss_pred CceEEEEeCCCCCchHHHHH-HHHHhhccCCCCCCCCcceEEEEcCC--CHHHHHhcCC-ccceEEEecc-CCeEEE--e
Q 031531 47 TRKLVLYSKPGCCLCDGLKE-KLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQY-EIPVLARVLS-DGTEVL--M 119 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~-~L~~~~~~~~~~~~~~I~~eeIDId~--d~el~ekyg~-~VPVL~i~~i-dGe~i~--~ 119 (158)
.+-++.++.+||+.|+..++ +|..-. +.+ .-..++-+-.+|+++ ..++.+.|+. ..|.+..... +|+.+. .
T Consensus 18 K~llv~~~~~~c~~c~~~~~~vl~~~~-v~~-~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~ 95 (114)
T cd02958 18 KWLLVYLQSEDEFDSQVLNRDLWSNES-VKE-FIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWS 95 (114)
T ss_pred ceEEEEEecCCcchHHHHHHHHcCCHH-HHH-HHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEc
Confidence 44567788999999999865 342210 000 001256667778874 3357778875 6999987544 677543 5
Q ss_pred cCCCHHHHHHHHHhc
Q 031531 120 ACINRFRIEAWLSQM 134 (158)
Q Consensus 120 grfd~d~L~~~L~~~ 134 (158)
|..+++++.+.|+++
T Consensus 96 G~~~~~~f~~~L~~~ 110 (114)
T cd02958 96 GNITPEDLLSQLIEF 110 (114)
T ss_pred CCCCHHHHHHHHHHH
Confidence 888999999998774
No 172
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.71 E-value=0.02 Score=45.64 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=53.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC--------------------CHHHHHhcCC-c
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--------------------NPEWEKSYQY-E 103 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~--------------------d~el~ekyg~-~ 103 (158)
..++-+..|+.+||+.|.+....+.+.. +..++.+.-+..++ +.++.+.|+. .
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~------~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~ 146 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIA------RAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGK 146 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHH------HhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCc
Confidence 3455688899999999999988887763 22345555555222 2233445564 4
Q ss_pred cceEEEeccCCeEEEecCC-CHHHHHHHHHhc
Q 031531 104 IPVLARVLSDGTEVLMACI-NRFRIEAWLSQM 134 (158)
Q Consensus 104 VPVL~i~~idGe~i~~grf-d~d~L~~~L~~~ 134 (158)
+|..++...+|+....|.. ..+.++++|++.
T Consensus 147 ~P~~~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 147 IPYGVLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred cceEEEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 8876653456876655533 457888888754
No 173
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=96.65 E-value=0.0066 Score=45.07 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=39.0
Q ss_pred eEEEEeCCCCC------chHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHH----hcC---------Ccc-ceEE
Q 031531 49 KLVLYSKPGCC------LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----SYQ---------YEI-PVLA 108 (158)
Q Consensus 49 ~VtLYTkpgC~------lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~e----kyg---------~~V-PVL~ 108 (158)
.|.+|++.-=+ -|+++..+|+.. +|+|++|||..|++.++ +.| ... |.|+
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~----------kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF 71 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAK----------KIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIF 71 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHT----------T--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHc----------CCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEE
Confidence 35566644333 377888888887 89999999999987443 332 224 7888
Q ss_pred EeccCCeEEEecCCCHHHHHHHHHh
Q 031531 109 RVLSDGTEVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 109 i~~idGe~i~~grfd~d~L~~~L~~ 133 (158)
.||+ +.| |.+++.++-+.
T Consensus 72 ---~~~~--Y~G--dye~f~ea~E~ 89 (99)
T PF04908_consen 72 ---NGDE--YCG--DYEDFEEANEN 89 (99)
T ss_dssp ---ETTE--EEE--EHHHHHHHHCT
T ss_pred ---eCCE--EEe--eHHHHHHHHhh
Confidence 6776 345 33665555443
No 174
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.62 E-value=0.015 Score=53.43 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=59.1
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCe---EEEecCCC
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGT---EVLMACIN 123 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe---~i~~grfd 123 (158)
..+.+|+.++|..|.+++++|+++..+ .+.|+++++|..++.++.++|+. .+|.+.+...+|+ ..|.|-..
T Consensus 368 v~l~~~~~~~~~~~~e~~~~l~e~~~~-----s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~ 442 (555)
T TIGR03143 368 VTLLLFLDGSNEKSAELQSFLGEFASL-----SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPS 442 (555)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHHhc-----CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCc
Confidence 368889999999999999999998532 34799999999999999999996 6899885322443 45555444
Q ss_pred HHHHHHHH
Q 031531 124 RFRIEAWL 131 (158)
Q Consensus 124 ~d~L~~~L 131 (158)
-.++..++
T Consensus 443 G~Ef~s~i 450 (555)
T TIGR03143 443 GHELNSFI 450 (555)
T ss_pred cHhHHHHH
Confidence 45554444
No 175
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.62 E-value=0.0052 Score=40.55 Aligned_cols=60 Identities=25% Similarity=0.404 Sum_probs=44.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCC-CcceEEEEcC-CCHHHHHhcC---CccceEEEeccCCe
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLH-DVDLQVRDIT-TNPEWEKSYQ---YEIPVLARVLSDGT 115 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~-~I~~eeIDId-~d~el~ekyg---~~VPVL~i~~idGe 115 (158)
+.-|.++||+.|......|.+... +.. .+.+..+|+. .+++..+.|+ ..+|.+..- .+|+
T Consensus 36 ~v~f~~~~C~~C~~~~~~l~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~ 100 (127)
T COG0526 36 LVDFWAPWCPPCRAEAPLLEELAE-----EYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLF-KDGK 100 (127)
T ss_pred EEEEEcCcCHHHHhhchhHHHHHH-----HhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEE-eCcc
Confidence 433359999999999999998742 222 5899999997 7888888887 568877632 4554
No 176
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.61 E-value=0.0059 Score=48.49 Aligned_cols=25 Identities=24% Similarity=0.703 Sum_probs=22.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHH
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQA 70 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~ 70 (158)
....|.+|+.+.||+|.++.+.|.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 5678999999999999999999975
No 177
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.61 E-value=0.0051 Score=42.34 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=40.1
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceEEE
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLAR 109 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i 109 (158)
..+-+..|+++||+.|+..++.+.....+. ..-..++-+..+|++++....+..+..+|.+++
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~-~~~~~~fv~v~vd~~~~~~~~~~~~~~~P~~~~ 79 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQ-EALNKNFVLVKVDVDDEDPNAQFDRQGYPTFFF 79 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHH-HHHHHCSEEEEEETTTHHHHHHHHHCSSSEEEE
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHH-HHHHCCEEEEEEEcCCCChhHHhCCccCCEEEE
Confidence 345678889999999999998872210000 000237889999998655433333345999874
No 178
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.56 E-value=0.0081 Score=44.05 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=45.4
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCC-CCCcceEEEEcCCCH------------------------HHHHh
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDITTNP------------------------EWEKS 99 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~-~~~I~~eeIDId~d~------------------------el~ek 99 (158)
..+.-+..|..+||+.|.+....|.++.. +-.+ ..++++--++++.+. ++.++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~--~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYE--KLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRT 94 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHH--HHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHH
Confidence 34556888889999999998888876521 0011 136777778887553 24445
Q ss_pred cCC-ccceEEEeccCCeE
Q 031531 100 YQY-EIPVLARVLSDGTE 116 (158)
Q Consensus 100 yg~-~VPVL~i~~idGe~ 116 (158)
|+. .+|.+++...+|+.
T Consensus 95 ~~v~~~P~~~lid~~G~i 112 (131)
T cd03009 95 FKIEGIPTLIILDADGEV 112 (131)
T ss_pred cCCCCCCEEEEECCCCCE
Confidence 774 58888864446653
No 179
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.56 E-value=0.021 Score=37.78 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=44.6
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC------CHHHHHhcC-CccceEEEeccCCeEEEecCCC
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQ-YEIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~------d~el~ekyg-~~VPVL~i~~idGe~i~~grfd 123 (158)
+||+.+. +.|.++.-.|+.. +++|+.+.++- .+++.+... ..||++. .+|..+ ++
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~---~~g~~l----~e 63 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEEL----------GLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLV---DGDLVL----TE 63 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHc----------CCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEE---ECCEEE----Ec
Confidence 6788776 6788888888876 67777666652 233444333 3699998 577655 34
Q ss_pred HHHHHHHHHh
Q 031531 124 RFRIEAWLSQ 133 (158)
Q Consensus 124 ~d~L~~~L~~ 133 (158)
-..|.++|++
T Consensus 64 s~aI~~yL~~ 73 (76)
T cd03046 64 SAAIILYLAE 73 (76)
T ss_pred HHHHHHHHHH
Confidence 5888888875
No 180
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=96.50 E-value=0.023 Score=37.84 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=44.7
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC------CHHHHHhcCC-ccceEEEeccCCeEEEecCCC
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQY-EIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~------d~el~ekyg~-~VPVL~i~~idGe~i~~grfd 123 (158)
+||..++.+.|.++.-.|+.. +++|+.++++. .+++.+.... .||++. .+|..+. +
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~----------~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~---~~~~~l~----e 64 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDEL----------GLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLE---DGDFVLW----E 64 (73)
T ss_pred EEEecCCCcchHHHHHHHHHc----------CCCCEEEEeccccccccCHHHHhhCCCCCCCEEE---ECCEEEE----C
Confidence 689999999999999999987 67777666642 2344443333 699998 5665552 3
Q ss_pred HHHHHHHH
Q 031531 124 RFRIEAWL 131 (158)
Q Consensus 124 ~d~L~~~L 131 (158)
...|.++|
T Consensus 65 S~aI~~YL 72 (73)
T cd03047 65 SNAILRYL 72 (73)
T ss_pred HHHHHHHh
Confidence 46666665
No 181
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.45 E-value=0.0077 Score=42.71 Aligned_cols=58 Identities=14% Similarity=0.281 Sum_probs=37.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH----HHHHhcCC-ccceEE
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQY-EIPVLA 108 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~----el~ekyg~-~VPVL~ 108 (158)
..+-+..|..+||+.|.+....|+++.. ....++.+..+- +.+. ++.++++. ..|++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~----~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIAR----AEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHH----HhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEe
Confidence 4566888899999999999999988631 112245555442 3332 35666776 478765
No 182
>PLN02473 glutathione S-transferase
Probab=96.44 E-value=0.024 Score=44.69 Aligned_cols=69 Identities=9% Similarity=0.149 Sum_probs=48.5
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC------CCHHHHHhcC-CccceEEEeccCCeEEEecC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT------TNPEWEKSYQ-YEIPVLARVLSDGTEVLMAC 121 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId------~d~el~ekyg-~~VPVL~i~~idGe~i~~gr 121 (158)
.++||+.+.|+.|.++.-.|+++ +++|+.+.++ ..+++.+..- -.||+|+ .||..+..
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~----------gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~---~~g~~l~E-- 66 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEK----------GIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIE---DGDLKLFE-- 66 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHc----------CCCceEEEecCcccccCCHHHHhhCCCCCCCeEE---ECCEEEEe--
Confidence 46899999999999999999887 7777766554 2345554432 3699998 57765533
Q ss_pred CCHHHHHHHHHhc
Q 031531 122 INRFRIEAWLSQM 134 (158)
Q Consensus 122 fd~d~L~~~L~~~ 134 (158)
-..|.++|.+.
T Consensus 67 --S~aI~~YL~~~ 77 (214)
T PLN02473 67 --SRAIARYYATK 77 (214)
T ss_pred --hHHHHHHHHHH
Confidence 36677776544
No 183
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.44 E-value=0.027 Score=38.72 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=47.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh----c--CCccceEEEeccCCeEEEecCCC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----Y--QYEIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek----y--g~~VPVL~i~~idGe~i~~grfd 123 (158)
.++|..+..+.|..+.-+|+.. +++|+.+.++..+++.+. + .-.||+|. .||..+..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~----------gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~---~~g~~l~E---- 64 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAA----------GVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVE---IDGMKLVQ---- 64 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHc----------CCCcEEEEeccHHHHHhhccccCCCCCCCCEEE---ECCEEEee----
Confidence 4789999999999999999887 788887777654443221 1 12699998 57765533
Q ss_pred HHHHHHHHHh
Q 031531 124 RFRIEAWLSQ 133 (158)
Q Consensus 124 ~d~L~~~L~~ 133 (158)
...|..+|.+
T Consensus 65 S~AI~~YL~~ 74 (79)
T cd03077 65 TRAILNYIAG 74 (79)
T ss_pred HHHHHHHHHH
Confidence 3778888764
No 184
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.43 E-value=0.02 Score=44.91 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=33.5
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhc-cCCCC---CCCCcceEEEEcCCCHH
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFL-LSGPD---SLHDVDLQVRDITTNPE 95 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~-~~~~~---~~~~I~~eeIDId~d~e 95 (158)
.+-+..|+.+||+.|.+....|.++.. +.... ...++++..|+.+++++
T Consensus 26 k~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~ 78 (146)
T cd03008 26 RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ 78 (146)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH
Confidence 456788899999999999999987421 00000 12368888888886553
No 185
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.42 E-value=0.0035 Score=45.94 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=43.0
Q ss_pred EeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH-------HHHHhcCCccceEEEeccCCeE---E---Ee
Q 031531 53 YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-------EWEKSYQYEIPVLARVLSDGTE---V---LM 119 (158)
Q Consensus 53 YTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~-------el~ekyg~~VPVL~i~~idGe~---i---~~ 119 (158)
|+.|.|.-|.+|+++|++. |++|+.+|+.+++ ++.+..|.++--++. ..|+. + -.
T Consensus 1 Y~~~~C~t~rka~~~L~~~----------gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin--~~~~~~k~l~~~~~ 68 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN----------GIEYEFIDYKKEPLSREELRELLSKLGNGPDDLIN--TRSKTYKELGKLKK 68 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT----------T--EEEEETTTS---HHHHHHHHHHHTSSGGGGB---TTSHHHHHTTHHHC
T ss_pred CcCCCCHHHHHHHHHHHHc----------CCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhc--CccchHhhhhhhhh
Confidence 8899999999999999997 9999999999754 244455654444431 22320 1 12
Q ss_pred cCCCHHHHHHHHHhcC
Q 031531 120 ACINRFRIEAWLSQMS 135 (158)
Q Consensus 120 grfd~d~L~~~L~~~~ 135 (158)
..++.+++.++|.+..
T Consensus 69 ~~~s~~e~i~~l~~~p 84 (110)
T PF03960_consen 69 DDLSDEELIELLLENP 84 (110)
T ss_dssp TTSBHHHHHHHHHHSG
T ss_pred hhhhhHHHHHHHHhCh
Confidence 2356677777765543
No 186
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.34 E-value=0.019 Score=42.49 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=44.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCC-CCcceEEEEcCCCH-------------------------HHHHh
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL-HDVDLQVRDITTNP-------------------------EWEKS 99 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~-~~I~~eeIDId~d~-------------------------el~ek 99 (158)
.+.-+..|..+||+.|.+....|.++.. .-... .++++.-|+++.++ ++.+.
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~--~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYE--KLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHH--HHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 3456788889999999998888876521 00111 36777778887653 23344
Q ss_pred cCC-ccceEEEeccCCeEE
Q 031531 100 YQY-EIPVLARVLSDGTEV 117 (158)
Q Consensus 100 yg~-~VPVL~i~~idGe~i 117 (158)
|+. .+|.+++...+|+.+
T Consensus 95 ~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred cCCCCCCEEEEECCCCCEE
Confidence 664 589888643456533
No 187
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0085 Score=55.61 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=74.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCC--CCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeE--EEecCCCH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL--HDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE--VLMACINR 124 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~--~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~--i~~grfd~ 124 (158)
++-|-.|||+.|..+..-.++... ...+ -++.+-+||-+++.++..+|+. +.|+|.+= .||+. -..|..+.
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~---~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiF-rnG~~~~~Y~G~r~a 121 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAAT---ELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIF-RNGRSAQDYNGPREA 121 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHH---HhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEE-ecCCcceeccCcccH
Confidence 467889999999988877766521 1122 3789999999999999999996 69999863 68873 34566788
Q ss_pred HHHHHHHHhcCCCceeeeeecceeeee
Q 031531 125 FRIEAWLSQMSLDCVMAYQQLSFLNIV 151 (158)
Q Consensus 125 d~L~~~L~~~~l~~~~~~~~~~~~~~~ 151 (158)
+.|-.||.+...+.+.--+-.-..-.+
T Consensus 122 dgIv~wl~kq~gPa~~~l~~~~~a~~~ 148 (493)
T KOG0190|consen 122 DGIVKWLKKQSGPASKTLKTVDEAEEF 148 (493)
T ss_pred HHHHHHHHhccCCCceecccHHHHHhh
Confidence 999999999999888776654444333
No 188
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=96.22 E-value=0.012 Score=52.01 Aligned_cols=73 Identities=19% Similarity=0.417 Sum_probs=50.1
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcC---C-ccceEEEeccCCeEEEecCCC
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ---Y-EIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg---~-~VPVL~i~~idGe~i~~grfd 123 (158)
.+++||.-..||+|-+.+++|+=. +|+|+.|.++ |-++.+-+ + .||.|. ++|+...-...=
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyh----------gisY~VVEVn--pV~r~eIk~SsykKVPil~---~~Geqm~dSsvI 153 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYH----------GISYAVVEVN--PVLRQEIKWSSYKKVPILL---IRGEQMVDSSVI 153 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhc----------CCceEEEEec--chhhhhccccccccccEEE---eccceechhHHH
Confidence 589999999999999999999775 8999998874 43444333 2 499999 678864322122
Q ss_pred HHHHHHHHHhcC
Q 031531 124 RFRIEAWLSQMS 135 (158)
Q Consensus 124 ~d~L~~~L~~~~ 135 (158)
...|...|+..+
T Consensus 154 Is~laTyLq~~~ 165 (370)
T KOG3029|consen 154 ISLLATYLQDKR 165 (370)
T ss_pred HHHHHHHhccCC
Confidence 234444444333
No 189
>PLN02395 glutathione S-transferase
Probab=96.03 E-value=0.051 Score=42.76 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=46.9
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC------CHHHHHhcCC-ccceEEEeccCCeEEEecC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQY-EIPVLARVLSDGTEVLMAC 121 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~------d~el~ekyg~-~VPVL~i~~idGe~i~~gr 121 (158)
.++||+.++|+ +.+++-.|++. |++|+.+.++- .+++.+..-. .||+|. .+|..+
T Consensus 2 ~~~ly~~~~~~-~~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~---~~~~~l---- 63 (215)
T PLN02395 2 VLKVYGPAFAS-PKRALVTLIEK----------GVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIV---DGDYKI---- 63 (215)
T ss_pred eEEEEcCCcCc-HHHHHHHHHHc----------CCCceEEEeccccCCcCCHHHHhhCCCCCCCEEE---ECCEEE----
Confidence 57999988865 78888888876 77777776652 3455443323 699998 567555
Q ss_pred CCHHHHHHHHHhc
Q 031531 122 INRFRIEAWLSQM 134 (158)
Q Consensus 122 fd~d~L~~~L~~~ 134 (158)
++-..|.++|.+.
T Consensus 64 ~ES~aI~~YL~~~ 76 (215)
T PLN02395 64 FESRAIMRYYAEK 76 (215)
T ss_pred EcHHHHHHHHHHH
Confidence 3447788888754
No 190
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.072 Score=40.06 Aligned_cols=85 Identities=21% Similarity=0.267 Sum_probs=57.3
Q ss_pred CCceEEEEeCCC-CCchH------HHHHHHHHhhccCCCCCCCCcceEEEEcCCCH------HHHHhcC---CccceEEE
Q 031531 46 STRKLVLYSKPG-CCLCD------GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP------EWEKSYQ---YEIPVLAR 109 (158)
Q Consensus 46 ~~~~VtLYTkpg-C~lC~------~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~------el~ekyg---~~VPVL~i 109 (158)
...++++|+.+. |.-|. +..+||+... .---.+.+|.|+.|||..++ ++.++-. +.-|+++
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaal--kRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPliv- 79 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAAL--KRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIV- 79 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHH--hccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEE-
Confidence 345788898765 88884 4566776652 12245678999999997432 3444432 4579999
Q ss_pred eccCCeEEEecCCCHHHHHHHHHhcC
Q 031531 110 VLSDGTEVLMACINRFRIEAWLSQMS 135 (158)
Q Consensus 110 ~~idGe~i~~grfd~d~L~~~L~~~~ 135 (158)
++|+.+..|...-.++-+...+++
T Consensus 80 --vedeiVaeGnprlKdiy~~m~d~~ 103 (106)
T COG4837 80 --VEDEIVAEGNPRLKDIYRVMDDKG 103 (106)
T ss_pred --EcceEeecCCchHHHHHHHHHHhc
Confidence 789888888666677777666554
No 191
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.88 E-value=0.01 Score=45.44 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=32.3
Q ss_pred CCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHH-------HH--hcCC-ccceEEE
Q 031531 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW-------EK--SYQY-EIPVLAR 109 (158)
Q Consensus 55 kpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el-------~e--kyg~-~VPVL~i 109 (158)
++|||.|..++..+++... ....+..+.++.+-+.++| +. +++. .||+|+.
T Consensus 35 ~sWCPDC~~aep~v~~~f~----~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFK----KAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHH----H-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CcccHHHHHHHHHHHHHHH----hCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 5799999999999988742 1233678888888654443 33 3554 6999995
No 192
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.041 Score=44.95 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=58.3
Q ss_pred CCCCCCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC---------C-------HHHHHhcCC-c
Q 031531 41 SSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---------N-------PEWEKSYQY-E 103 (158)
Q Consensus 41 s~~~~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~---------d-------~el~ekyg~-~ 103 (158)
|-++...-.+.+|.+++|++|++.|+.+.....+.+ .=-.++.+.++||+. + +||+++|+. +
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrE-ylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLRE-YLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHH-HHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence 445556667999999999999999988854311100 001257888888873 1 268888886 5
Q ss_pred cceEEEeccCCeEEE--ecCCCHHHHHHHH
Q 031531 104 IPVLARVLSDGTEVL--MACINRFRIEAWL 131 (158)
Q Consensus 104 VPVL~i~~idGe~i~--~grfd~d~L~~~L 131 (158)
.|.++--..+|+-+. -|-.++++....|
T Consensus 116 tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vl 145 (182)
T COG2143 116 TPTFVFFDKTGKTILELPGYMPPEQFLAVL 145 (182)
T ss_pred CceEEEEcCCCCEEEecCCCCCHHHHHHHH
Confidence 898874333455443 2557788776655
No 193
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.027 Score=47.72 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=53.3
Q ss_pred ceEEEEe-----CCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhc---C--CccceEEEeccCCeEE
Q 031531 48 RKLVLYS-----KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY---Q--YEIPVLARVLSDGTEV 117 (158)
Q Consensus 48 ~~VtLYT-----kpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~eky---g--~~VPVL~i~~idGe~i 117 (158)
..|.+|- .|.|++=+++..+|... +++|...||-+|+++++-. . -+.|.|+ ++|+.
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~----------nV~~~~fdIL~DeelRqglK~fSdWPTfPQly---I~GEF- 204 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSH----------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLY---VKGEF- 204 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHc----------CCCeeEEeccCCHHHHHHhhhhcCCCCcccee---ECCEe-
Confidence 4578885 47899999999999987 7899999999999988753 2 3799999 89984
Q ss_pred EecCCCHHHHHHHHHhc
Q 031531 118 LMACINRFRIEAWLSQM 134 (158)
Q Consensus 118 ~~grfd~d~L~~~L~~~ 134 (158)
.|+. |=|.+.++..
T Consensus 205 -iGGl--DIl~~m~~~g 218 (227)
T KOG0911|consen 205 -IGGL--DILKEMHEKG 218 (227)
T ss_pred -ccCc--HHHHHHhhcc
Confidence 4434 4444444443
No 194
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.74 E-value=0.066 Score=53.43 Aligned_cols=87 Identities=9% Similarity=0.017 Sum_probs=55.6
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEE---cC------------------------CCHHHH
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRD---IT------------------------TNPEWE 97 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeID---Id------------------------~d~el~ 97 (158)
..++-|.-|+.+||+.|.+....|+++.. .....++.+--|. ++ .+.++.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~---~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~ 495 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEK---KYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLW 495 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHH---HcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHH
Confidence 34567888999999999999999988741 1222344444332 11 122344
Q ss_pred HhcCC-ccceEEEeccCCeEEE--ecCCCHHHHHHHHHhc
Q 031531 98 KSYQY-EIPVLARVLSDGTEVL--MACINRFRIEAWLSQM 134 (158)
Q Consensus 98 ekyg~-~VPVL~i~~idGe~i~--~grfd~d~L~~~L~~~ 134 (158)
++|+. .+|..++...+|+.+. .|...+++|.++|+++
T Consensus 496 ~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 496 RELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred HhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 56664 5898886444787543 4656778888877655
No 195
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.60 E-value=0.11 Score=39.98 Aligned_cols=45 Identities=9% Similarity=0.153 Sum_probs=31.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~ 92 (158)
.....|..|..+||+.|....+.|.++.. .....++.+.-|.++.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~---~~~~~~v~~v~is~d~ 68 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAK---EYGAKGVAVVAINSND 68 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHH---HHhhCCeEEEEEecCc
Confidence 34566888889999999987777776631 1223467888887763
No 196
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=95.54 E-value=0.054 Score=36.32 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=39.9
Q ss_pred CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEc--C----CCHHHHHhcC--CccceEEEeccCCeEEEecCCCHHHHH
Q 031531 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI--T----TNPEWEKSYQ--YEIPVLARVLSDGTEVLMACINRFRIE 128 (158)
Q Consensus 57 gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDI--d----~d~el~ekyg--~~VPVL~i~~idGe~i~~grfd~d~L~ 128 (158)
.||+|.++.-+|+.+ |++++..-+ . ...+.+.+++ ..||+|.. .+|+.+ .+-..|.
T Consensus 1 ~sP~a~Rv~i~l~~~----------gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~--~~g~vi----~eS~~I~ 64 (70)
T PF13409_consen 1 FSPFAHRVRIALEEK----------GLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVD--PDGTVI----NESLAIL 64 (70)
T ss_dssp T-HHHHHHHHHHHHH----------TGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEE--TTTEEE----ESHHHHH
T ss_pred CchHhHHHHHHHHHh----------CCCCEEEEEeeecCccccChhhhccCcCeEEEEEEE--CCCCEe----eCHHHHH
Confidence 499999999999998 666655444 2 1213334443 47999994 378744 3568888
Q ss_pred HHHHh
Q 031531 129 AWLSQ 133 (158)
Q Consensus 129 ~~L~~ 133 (158)
++|++
T Consensus 65 ~yL~~ 69 (70)
T PF13409_consen 65 EYLEE 69 (70)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88875
No 197
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=95.53 E-value=0.029 Score=45.69 Aligned_cols=55 Identities=7% Similarity=-0.026 Sum_probs=44.5
Q ss_pred ccccccCcCCCCCCCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcce------EEEEcCCC
Q 031531 32 SPLAYSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDL------QVRDITTN 93 (158)
Q Consensus 32 ~~~~~~~~~s~~~~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~------eeIDId~d 93 (158)
--++|.+.+|..-..+..++-|...||+.|+.-...|+++. ..++++ .-||.+++
T Consensus 45 ~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~-------~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 45 KDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIK-------AAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHH-------HcCCCcccccceEEEECccc
Confidence 34566666777777888999999999999999999999983 237888 88887764
No 198
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=95.43 E-value=0.17 Score=37.56 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=42.5
Q ss_pred EEEeCCC-CCchH------HHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH------HHHhcC---CccceEEEeccCC
Q 031531 51 VLYSKPG-CCLCD------GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE------WEKSYQ---YEIPVLARVLSDG 114 (158)
Q Consensus 51 tLYTkpg-C~lC~------~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e------l~ekyg---~~VPVL~i~~idG 114 (158)
++|+.+- |.-|. ++.+||+... .---.+.+|+|+.|||.+.++ +.++-. +--|+++ +||
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal--~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~---i~~ 75 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAAL--KRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVV---IND 75 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHH--HHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEE---ETT
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHH--hCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEE---ECC
Confidence 4677554 88884 4455554431 000345689999999996443 334432 2369999 899
Q ss_pred eEEEecCCCHHHHHHHH
Q 031531 115 TEVLMACINRFRIEAWL 131 (158)
Q Consensus 115 e~i~~grfd~d~L~~~L 131 (158)
+.+.-|...-.+|-+.+
T Consensus 76 eiV~EGnp~LK~I~~~~ 92 (93)
T PF07315_consen 76 EIVAEGNPQLKDIYEEM 92 (93)
T ss_dssp EEEEESS--HHHHHHHH
T ss_pred EEEecCCccHHHHHHhh
Confidence 98888866556665554
No 199
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=95.34 E-value=0.063 Score=41.97 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=46.4
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--C-----CHHHHHhcC-CccceEEEeccCCeEEEecCC
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T-----NPEWEKSYQ-YEIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~-----d~el~ekyg-~~VPVL~i~~idGe~i~~grf 122 (158)
+||+.+.|+.|.++.-+|.+. +++|+.+.++ . .+++.+..- ..||+|+ .||..+.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~----------gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~---~~g~~l~---- 63 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALK----------GIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLD---IDGEVLT---- 63 (210)
T ss_pred CcccCCCCCchHHHHHHHHHC----------CCCceEEecccccccccCChhhhhcCCCCcCCEEE---ECCEEee----
Confidence 478889999999999999887 7877776666 2 233433322 3699998 5786553
Q ss_pred CHHHHHHHHHhc
Q 031531 123 NRFRIEAWLSQM 134 (158)
Q Consensus 123 d~d~L~~~L~~~ 134 (158)
.-..|.++|.+.
T Consensus 64 ES~aI~~yl~~~ 75 (210)
T TIGR01262 64 QSLAIIEYLEET 75 (210)
T ss_pred cHHHHHHHHHHh
Confidence 336666666554
No 200
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.32 E-value=0.12 Score=41.71 Aligned_cols=60 Identities=7% Similarity=0.105 Sum_probs=38.6
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC-------CCHH----HHHhcCCccceE
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------TNPE----WEKSYQYEIPVL 107 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId-------~d~e----l~ekyg~~VPVL 107 (158)
...+-+..|..+||+.|..-...|.++.. .....++.+--|+++ ++++ +.++++...|++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~---~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl 108 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHS---VFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFF 108 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHH---HHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceee
Confidence 44566888999999999987777766531 123457888777763 2332 445566655654
No 201
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.23 E-value=0.031 Score=38.50 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=35.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHH
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK 98 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~e 98 (158)
++-+..|..+||+.|.+..+.|.++.. +-.+..++++.-|.++++.+-.+
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~--~~~~~~~v~~v~Vs~d~~~~~~~ 51 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYK--KYKKKDDVEFVFVSLDEDEEEWK 51 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHH--HHTTTTTEEEEEEE-SSSHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHH--HhCCCCCEEEEEEEeCCCHHHHH
Confidence 345788999999999999999988642 10114589999999998754333
No 202
>PLN02378 glutathione S-transferase DHAR1
Probab=95.21 E-value=0.089 Score=42.13 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=41.3
Q ss_pred CCCCchHHHHHHHHHhhccCCCCCCCCcceE--EEEcCCCHHHHHhcC--CccceEEEeccCCeEEEecCCCHHHHHHHH
Q 031531 56 PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQ--VRDITTNPEWEKSYQ--YEIPVLARVLSDGTEVLMACINRFRIEAWL 131 (158)
Q Consensus 56 pgC~lC~~aK~~L~~~~~~~~~~~~~~I~~e--eIDId~d~el~ekyg--~~VPVL~i~~idGe~i~~grfd~d~L~~~L 131 (158)
..|++|.++.-.|+.. +++|+ .+|+...++.+.+.+ -.||+|. .||..+ +.-..|.++|
T Consensus 18 ~~~p~~~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~---~~~~~l----~ES~aI~~YL 80 (213)
T PLN02378 18 GDCPFSQRALLTLEEK----------SLTYKIHLINLSDKPQWFLDISPQGKVPVLK---IDDKWV----TDSDVIVGIL 80 (213)
T ss_pred CCCcchHHHHHHHHHc----------CCCCeEEEeCcccCCHHHHHhCCCCCCCEEE---ECCEEe----cCHHHHHHHH
Confidence 4599999999999887 56555 455543333333333 3699998 577655 3447888888
Q ss_pred Hhc
Q 031531 132 SQM 134 (158)
Q Consensus 132 ~~~ 134 (158)
.+.
T Consensus 81 ~~~ 83 (213)
T PLN02378 81 EEK 83 (213)
T ss_pred HHh
Confidence 764
No 203
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.11 Score=44.46 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=61.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCc--ceEEEEcCCCHHH-HHhcCCccceEEEeccCCeEEEecCCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDV--DLQVRDITTNPEW-EKSYQYEIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I--~~eeIDId~d~el-~ekyg~~VPVL~i~~idGe~i~~grfd 123 (158)
.+.|.+|+...|--|-.+-+.|+.. |+ ..+.+|-...+.+ .+++-.+||-++ +||+...-+-.|
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nk----------gll~~Vkii~a~~p~f~~~~~~V~SvP~Vf---~DGel~~~dpVd 76 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENK----------GLLGKVKIIDAELPPFLAFEKGVISVPSVF---IDGELVYADPVD 76 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhc----------CCCCCceEEEcCCChHHHhhcceeecceEE---EcCeEEEcCCCC
Confidence 4789999999999999999999886 33 3455565555543 344557999999 899977666699
Q ss_pred HHHHHHHHHh---cCCCc
Q 031531 124 RFRIEAWLSQ---MSLDC 138 (158)
Q Consensus 124 ~d~L~~~L~~---~~l~~ 138 (158)
+++|+..+.. .++|+
T Consensus 77 p~~ies~~~G~~~~~iDv 94 (265)
T COG5494 77 PEEIESILSGQVTKQIDV 94 (265)
T ss_pred HHHHHHHHcCccccccch
Confidence 9999999987 55554
No 204
>smart00594 UAS UAS domain.
Probab=95.13 E-value=0.21 Score=37.05 Aligned_cols=84 Identities=11% Similarity=0.030 Sum_probs=53.6
Q ss_pred CceEEEEeCCCCCchHHHHHHH-HHhhccCCCCCCCCcceEEEEcCCCH--HHHHhcCC-ccceEEEeccCC-e----E-
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKL-QAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSYQY-EIPVLARVLSDG-T----E- 116 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L-~~~~~~~~~~~~~~I~~eeIDId~d~--el~ekyg~-~VPVL~i~~idG-e----~- 116 (158)
+..++.+..+||+.|+...+-+ ..-. +.+-- ..++-+-.+|+++++ ++.++|+. +.|.+.+...+| + .
T Consensus 28 K~~lv~~~~~~c~~c~~~~r~vl~~~~-V~~~i-~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~ 105 (122)
T smart00594 28 RLLWLYLHSQDSPDSQVFNRDVLCNEA-VKSLI-RENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWV 105 (122)
T ss_pred CCEEEEEeCCCCchHHHHHHHHccCHH-HHHHH-HcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEe
Confidence 4567788899999999977643 2210 00000 125666678888655 47778885 689998754454 2 1
Q ss_pred -EEecCCCHHHHHHHHH
Q 031531 117 -VLMACINRFRIEAWLS 132 (158)
Q Consensus 117 -i~~grfd~d~L~~~L~ 132 (158)
...|..++++|.+.|.
T Consensus 106 ~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 106 GVVEGEISPEELMTFLE 122 (122)
T ss_pred ccccCCCCHHHHHHhhC
Confidence 2357788899888763
No 205
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=95.04 E-value=0.28 Score=33.35 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=43.9
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CC----HHHHHhcCC--ccceEEEeccC-CeEEE
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQY--EIPVLARVLSD-GTEVL 118 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d----~el~ekyg~--~VPVL~i~~id-Ge~i~ 118 (158)
|.+++|.-++ .|..++-+|+.. +++|+.+.++ .. +++.+..-. .+|++. .+ |..+.
T Consensus 1 ~~l~l~~~~~--~~~~~r~~l~~~----------gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~---~~~~~~l~ 65 (76)
T PF02798_consen 1 MTLTLYNGRG--RSERIRLLLAEK----------GVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALE---DGDGFVLT 65 (76)
T ss_dssp EEEEEESSST--TTHHHHHHHHHT----------T--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEE---ETTTEEEE
T ss_pred CEEEEECCCC--chHHHHHHHHHh----------cccCceEEEecccccccchhhhhcccccceeeEEE---ECCCCEEE
Confidence 4688999888 888888888876 6666665444 33 556665544 699999 45 76663
Q ss_pred ecCCCHHHHHHHHH
Q 031531 119 MACINRFRIEAWLS 132 (158)
Q Consensus 119 ~grfd~d~L~~~L~ 132 (158)
. ...|...|.
T Consensus 66 e----s~AI~~YLa 75 (76)
T PF02798_consen 66 E----SNAILRYLA 75 (76)
T ss_dssp S----HHHHHHHHH
T ss_pred c----HHHHHHHhC
Confidence 3 366666664
No 206
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=95.01 E-value=0.11 Score=43.52 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=44.6
Q ss_pred CCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CC-HHHHHhcCC-ccceEEEeccCCeEEEecCCCHHHHHHH
Q 031531 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN-PEWEKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAW 130 (158)
Q Consensus 55 kpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d-~el~ekyg~-~VPVL~i~~idGe~i~~grfd~d~L~~~ 130 (158)
.+.|++|.++.-.|... |++|+.++|+ .. +++.+..-. .||||. .+|..+ ++-..|.++
T Consensus 16 ~~~cp~~~rv~i~L~ek----------gi~~e~~~vd~~~~~~~fl~inP~g~vPvL~---~~g~~l----~ES~aI~eY 78 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLK----------GVVFNVTTVDLKRKPEDLQNLAPGTHPPFLT---YNTEVK----TDVNKIEEF 78 (236)
T ss_pred CCCCHhHHHHHHHHHHc----------CCCcEEEEECCCCCCHHHHHHCcCCCCCEEE---ECCEEe----ecHHHHHHH
Confidence 47899999999999887 6766666665 43 444443333 699998 567655 456888888
Q ss_pred HHhc
Q 031531 131 LSQM 134 (158)
Q Consensus 131 L~~~ 134 (158)
|.+.
T Consensus 79 L~e~ 82 (236)
T TIGR00862 79 LEET 82 (236)
T ss_pred HHHH
Confidence 8864
No 207
>PRK10357 putative glutathione S-transferase; Provisional
Probab=95.01 E-value=0.13 Score=40.22 Aligned_cols=69 Identities=10% Similarity=0.137 Sum_probs=48.4
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC--CHHHHHhcC--CccceEEEeccCCeEEEecCCCHHH
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQ--YEIPVLARVLSDGTEVLMACINRFR 126 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~--d~el~ekyg--~~VPVL~i~~idGe~i~~grfd~d~ 126 (158)
+||+.+.|+.+.++.-+|+.. +++|+.++++. .+....+++ -.||+|+. .||..+. +-..
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~----------gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~--~~g~~l~----eS~a 65 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEK----------GITFEFVNELPYNADNGVAQYNPLGKVPALVT--EEGECWF----DSPI 65 (202)
T ss_pred eeecCCCCchHHHHHHHHHHc----------CCCCeEEecCCCCCchhhhhcCCccCCCeEEe--CCCCeee----cHHH
Confidence 699999999999998888887 78888877763 333333444 36999972 3565553 3467
Q ss_pred HHHHHHhcC
Q 031531 127 IEAWLSQMS 135 (158)
Q Consensus 127 L~~~L~~~~ 135 (158)
|..+|.+..
T Consensus 66 I~~yL~~~~ 74 (202)
T PRK10357 66 IAEYIELLN 74 (202)
T ss_pred HHHHHHHhC
Confidence 777776553
No 208
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=94.84 E-value=0.051 Score=40.31 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=41.6
Q ss_pred CCCCCceEEEEeCC-CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH---HHHhcCCccceEE
Q 031531 43 SSSSTRKLVLYSKP-GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQYEIPVLA 108 (158)
Q Consensus 43 ~~~~~~~VtLYTkp-gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e---l~ekyg~~VPVL~ 108 (158)
+-..++.|..|... ||+.|......|+++.. .....++.+.-+..+.++. +.++++...|++.
T Consensus 25 ~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~---~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 91 (146)
T PF08534_consen 25 DFKGKPVVVNFWASAWCPPCRKELPYLNELQE---KYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLS 91 (146)
T ss_dssp GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHH---HHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEE
T ss_pred HhCCCeEEEEEEccCCCCcchhhhhhHHhhhh---hhccCceEEEEecccCCHHHHHHHHhhCCCceEEe
Confidence 33445556777777 99999999988888732 1134578999999888764 3334444455544
No 209
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=94.83 E-value=0.29 Score=35.79 Aligned_cols=61 Identities=11% Similarity=-0.042 Sum_probs=40.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC-----CCHH----HHHhcCCccceEE
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-----TNPE----WEKSYQYEIPVLA 108 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId-----~d~e----l~ekyg~~VPVL~ 108 (158)
..+.-|..|...||+.|......|.++.. .....++.+--|+.+ ++++ +.++++...|++.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~---~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQ---KYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAN 91 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHH---HcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEE
Confidence 34567888889999999999888888742 122345666555442 2332 4566777888776
No 210
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.16 Score=40.07 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=47.6
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC-----HHHHHhcC-CccceEEEeccCCeEEEecCCCH
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----PEWEKSYQ-YEIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d-----~el~ekyg-~~VPVL~i~~idGe~i~~grfd~ 124 (158)
++|..+.+++|.++.-.|.++ +++|+.+.++-. +++.+..- -.||+|+. .||..+ ++-
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~----------g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~--~~~~~l----~ES 65 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEK----------GLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVD--DDGEVL----TES 65 (211)
T ss_pred eeecCCCCcchHHHHHHHHHc----------CCCceEEEeCcccccCCHHHHhcCCCCCCCEEee--CCCCee----ecH
Confidence 689999999999999999887 666666666533 33433333 36999983 233334 345
Q ss_pred HHHHHHHHhcC
Q 031531 125 FRIEAWLSQMS 135 (158)
Q Consensus 125 d~L~~~L~~~~ 135 (158)
..|.++|.+..
T Consensus 66 ~AI~~YL~~~~ 76 (211)
T COG0625 66 GAILEYLAERY 76 (211)
T ss_pred HHHHHHHHhhC
Confidence 78888887765
No 211
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=94.78 E-value=0.08 Score=41.04 Aligned_cols=70 Identities=13% Similarity=-0.011 Sum_probs=37.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceEEEeccCCeE
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTE 116 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i~~idGe~ 116 (158)
..+-+..|+++||+.|.+.++..-.-..+.+.. ..++-...+|.+..+.-....+..+|.++....+|+.
T Consensus 23 ~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l-~~~Fv~V~l~~d~td~~~~~~g~~vPtivFld~~g~v 92 (130)
T cd02960 23 NKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLA-QEDFIMLNLVHETTDKNLSPDGQYVPRIMFVDPSLTV 92 (130)
T ss_pred CCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHH-HhCeEEEEEEeccCCCCcCccCcccCeEEEECCCCCC
Confidence 344566788999999999998753211000000 1133333455442111111355679999865456653
No 212
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=94.62 E-value=0.28 Score=41.34 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=29.9
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId 91 (158)
..-|..|..+||+.|..-...|.++. +.....|+++.-|+++
T Consensus 100 K~vvl~FwAswCp~c~~e~p~L~~L~---~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 100 KVLLIVNVASKCGLTSSNYSELSHLY---EKYKTQGFEILAFPCN 141 (236)
T ss_pred CeEEEEEEcCCCcchHHHHHHHHHHH---HHHhcCCcEEEEEecc
Confidence 45688899999999998777776653 1123457788778764
No 213
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.18 Score=42.72 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=47.8
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CCHHHHHhcC---CccceEEEeccCCeEEEec
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQ---YEIPVLARVLSDGTEVLMA 120 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d~el~ekyg---~~VPVL~i~~idGe~i~~g 120 (158)
-.|.||+.--||+=.+++=.|+.. +|+|+.++++ .-++|.-+.+ -.||||. .||+.++..
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~K----------gI~yE~veedl~~Ks~~ll~~np~hkKVPvL~---Hn~k~i~ES 72 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLK----------GIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLE---HNGKPICES 72 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhc----------CCceEEEecCCCCCCHHHHHhccccccCCEEE---ECCceehhh
Confidence 569999999999999999999887 7877777776 3567766665 3699999 899876533
No 214
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.23 Score=43.51 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=64.3
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCC-CcceEEEEcCCCHHHHHhcCC-ccceEEEeccCC-eEEEe-cCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLH-DVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDG-TEVLM-ACI 122 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~-~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idG-e~i~~-grf 122 (158)
...+..|-.|||+.|++.....++.. ...+ .+.+-.||.+++.++.++|+. ..|.+..- ..| +.+.+ +.-
T Consensus 48 ~~~~v~fyapwc~~c~~l~~~~~~~~-----~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f-~~~~~~~~~~~~~ 121 (383)
T KOG0191|consen 48 SPWLVEFYAPWCGHCKKLAPTYKKLA-----KALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVF-RPGKKPIDYSGPR 121 (383)
T ss_pred CceEEEEECCCCcchhhhchHHHHHH-----HHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEE-cCCCceeeccCcc
Confidence 46799999999999999999998763 1222 367888888899999999996 68999854 344 23333 335
Q ss_pred CHHHHHHHHHhcCCCcee
Q 031531 123 NRFRIEAWLSQMSLDCVM 140 (158)
Q Consensus 123 d~d~L~~~L~~~~l~~~~ 140 (158)
+.+.+.+++....-+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~ 139 (383)
T KOG0191|consen 122 NAESLAEFLIKELEPSVK 139 (383)
T ss_pred cHHHHHHHHHHhhccccc
Confidence 667888888666555443
No 215
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=94.28 E-value=0.19 Score=38.77 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=45.0
Q ss_pred CceEEEEeCCCC---CchH--------HHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHH----------hcCC-cc
Q 031531 47 TRKLVLYSKPGC---CLCD--------GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----------SYQY-EI 104 (158)
Q Consensus 47 ~~~VtLYTkpgC---~lC~--------~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~e----------kyg~-~V 104 (158)
|.+|.+|--.-| +.|. +....++.+. ..+++++..|+.+||+.+. +-|. ..
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk-------~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~L 73 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLK-------EQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEAL 73 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHH-------HTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHH-------hCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccC
Confidence 567888888776 3452 2223333331 2499999999999886433 3455 47
Q ss_pred ceEEEeccCCeEEEecCC-CHHHHHHHHHh
Q 031531 105 PVLARVLSDGTEVLMACI-NRFRIEAWLSQ 133 (158)
Q Consensus 105 PVL~i~~idGe~i~~grf-d~d~L~~~L~~ 133 (158)
|+++ +||+....|+| +.++|.+|++-
T Consensus 74 Pitl---VdGeiv~~G~YPt~eEl~~~~~i 100 (123)
T PF06953_consen 74 PITL---VDGEIVKTGRYPTNEELAEWLGI 100 (123)
T ss_dssp SEEE---ETTEEEEESS---HHHHHHHHT-
T ss_pred CEEE---ECCEEEEecCCCCHHHHHHHhCC
Confidence 9999 89998887775 45899888853
No 216
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.23 E-value=0.3 Score=32.83 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=40.4
Q ss_pred CCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC-----HHHHHhcC-CccceEEEeccCCeEEEecCCCHHHHH
Q 031531 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----PEWEKSYQ-YEIPVLARVLSDGTEVLMACINRFRIE 128 (158)
Q Consensus 55 kpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d-----~el~ekyg-~~VPVL~i~~idGe~i~~grfd~d~L~ 128 (158)
...|+.|.++.-.|+.. +++|+.++++-. +++.+... ..+|++. .+|..+. +-..|.
T Consensus 7 ~~~s~~s~~v~~~L~~~----------gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~---~~g~~l~----eS~aI~ 69 (73)
T cd03043 7 KNYSSWSLRPWLLLKAA----------GIPFEEILVPLYTPDTRARILEFSPTGKVPVLV---DGGIVVW----DSLAIC 69 (73)
T ss_pred CCCCHHHHHHHHHHHHc----------CCCCEEEEeCCCCccccHHHHhhCCCCcCCEEE---ECCEEEE----cHHHHH
Confidence 56788999999999887 788888777632 33333322 3699998 5776553 336666
Q ss_pred HHH
Q 031531 129 AWL 131 (158)
Q Consensus 129 ~~L 131 (158)
++|
T Consensus 70 ~YL 72 (73)
T cd03043 70 EYL 72 (73)
T ss_pred HHh
Confidence 655
No 217
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=94.08 E-value=0.18 Score=42.66 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=41.9
Q ss_pred CCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CCHHHHHhcC--CccceEEEeccCCeEEEecCCCHHHHHHHH
Q 031531 56 PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQ--YEIPVLARVLSDGTEVLMACINRFRIEAWL 131 (158)
Q Consensus 56 pgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d~el~ekyg--~~VPVL~i~~idGe~i~~grfd~d~L~~~L 131 (158)
-.|++|.++.-.|+++ +++|+.+.|+ +.++.+.+.+ -.||+|. .||..+ .+-..|.++|
T Consensus 71 g~cp~s~rV~i~L~ek----------gi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~---~d~~~L----~ES~aI~~YL 133 (265)
T PLN02817 71 GDCPFCQRVLLTLEEK----------HLPYDMKLVDLTNKPEWFLKISPEGKVPVVK---LDEKWV----ADSDVITQAL 133 (265)
T ss_pred CCCcHHHHHHHHHHHc----------CCCCEEEEeCcCcCCHHHHhhCCCCCCCEEE---ECCEEE----ecHHHHHHHH
Confidence 3499999999999987 6766665554 4344344444 3699998 566544 2347777777
Q ss_pred Hhc
Q 031531 132 SQM 134 (158)
Q Consensus 132 ~~~ 134 (158)
.+.
T Consensus 134 ~e~ 136 (265)
T PLN02817 134 EEK 136 (265)
T ss_pred HHH
Confidence 654
No 218
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.84 E-value=0.14 Score=37.29 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=30.4
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEc
Q 031531 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI 90 (158)
Q Consensus 44 ~~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDI 90 (158)
+.....|++|+.++||+|.+..+.|++... ...++.+..++.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~-----~~~~~~~~~~~~ 44 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLK-----EDPDVRVVFKEF 44 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHH-----HCCCceEEEEeC
Confidence 345678999999999999999999988531 122355555554
No 219
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.83 E-value=0.12 Score=43.45 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=28.6
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEE
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRD 89 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeID 89 (158)
.....|++||-+.||+|+++.+.+.+.++ ..+++++.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~------~g~V~v~~ip 154 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD------SGKVQLRHIL 154 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh------cCceEEEEEe
Confidence 44567999999999999999988877531 1235555554
No 220
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.82 E-value=0.13 Score=37.68 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=39.3
Q ss_pred ceEEE-EeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH---HHHhcCCccceEE
Q 031531 48 RKLVL-YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQYEIPVLA 108 (158)
Q Consensus 48 ~~VtL-YTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e---l~ekyg~~VPVL~ 108 (158)
+.+.+ |...||+.|......|.++.. .....++.+.-|..+..++ +.++++...|++.
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~ 86 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLP---ELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYA 86 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHH---HHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEE
Confidence 34444 458999999998888877631 1123478888888775543 3455677789887
No 221
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=93.81 E-value=0.53 Score=37.28 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=33.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CC----HHHHHhcCC-ccceEE
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQY-EIPVLA 108 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d----~el~ekyg~-~VPVL~ 108 (158)
++||..+ ++.|.++.-+|+++ +++|+.++|+ .+ +++.+..-. .||+|.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~ 56 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEA----------ELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIV 56 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHc----------CCCcEEEEecCcccccCCHHHHhhCcCCCCCEEE
Confidence 5789887 58899998888887 6777766665 32 344433223 699998
No 222
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=93.66 E-value=0.75 Score=34.83 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=27.3
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEc
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI 90 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDI 90 (158)
++-|..|..+||++|...-..|.++.. .....++.+--|+.
T Consensus 23 k~vvv~~~as~C~~c~~~~~~l~~l~~---~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 23 KVSLVVNVASECGFTDQNYRALQELHR---ELGPSHFNVLAFPC 63 (153)
T ss_pred CEEEEEEeCCCCCchhhhHHHHHHHHH---HHhhCCeEEEEEec
Confidence 344788999999999887776665521 12234677766664
No 223
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=93.56 E-value=0.51 Score=38.02 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=38.7
Q ss_pred CceEEEEeCCCCCchHHHHH-HH------HHhhccCCCCCCCCcceEEEEcCCCHHHHHhc--------CC-ccceEEEe
Q 031531 47 TRKLVLYSKPGCCLCDGLKE-KL------QAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY--------QY-EIPVLARV 110 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~-~L------~~~~~~~~~~~~~~I~~eeIDId~d~el~eky--------g~-~VPVL~i~ 110 (158)
++-+.-.+.++||+|+.+.+ .+ +-++ .+|--..+|-++.|++-..| |. +-|..+.-
T Consensus 38 KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN--------~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfl 109 (163)
T PF03190_consen 38 KPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN--------RNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFL 109 (163)
T ss_dssp --EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH--------HH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE
T ss_pred CcEEEEEEecCCcchhhhcccCcCCHHHHHHHh--------CCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEE
Confidence 34455667999999997764 22 1121 14556678888889887776 33 57877765
Q ss_pred ccCCeEEEecCCC
Q 031531 111 LSDGTEVLMACIN 123 (158)
Q Consensus 111 ~idGe~i~~grfd 123 (158)
..+|+.++-+.+-
T Consensus 110 tPdg~p~~~~tY~ 122 (163)
T PF03190_consen 110 TPDGKPFFGGTYF 122 (163)
T ss_dssp -TTS-EEEEESS-
T ss_pred CCCCCeeeeeeec
Confidence 6789887755443
No 224
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.55 E-value=0.2 Score=47.42 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=62.1
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC-CH---HHHHhcCC-ccceEEEeccCCeE--EEec
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-NP---EWEKSYQY-EIPVLARVLSDGTE--VLMA 120 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~-d~---el~ekyg~-~VPVL~i~~idGe~--i~~g 120 (158)
+-..-||.+||--|++.|+..-... ....+-.++.+=+.|+++ |+ ++.++||. ++|.++.-..+|++ ..-|
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~--~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~g 553 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDP--QVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTG 553 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcH--HHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcc
Confidence 5577899999999999998773210 011234588999999995 44 46677875 89998853235654 4568
Q ss_pred CCCHHHHHHHHHhcC
Q 031531 121 CINRFRIEAWLSQMS 135 (158)
Q Consensus 121 rfd~d~L~~~L~~~~ 135 (158)
+.+.+.+.++|+++.
T Consensus 554 f~~a~~~~~~l~~~~ 568 (569)
T COG4232 554 FLTADAFLEHLERAA 568 (569)
T ss_pred eecHHHHHHHHHHhc
Confidence 899999999998764
No 225
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.52 E-value=0.056 Score=46.31 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=62.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE-EecCCCHHHH
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV-LMACINRFRI 127 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i-~~grfd~d~L 127 (158)
.+.|..||||-|...+..|+... ....+.++..-+||++.|+.+.-+|-. ..|+|.-+ .||+.- ..|.-|++++
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a---~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv-kDGeFrrysgaRdk~df 118 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFA---TVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV-KDGEFRRYSGARDKNDF 118 (248)
T ss_pred HHHhcCCCCccccchHHHHhccC---CccCCCceeEEEEEEEeccccceeeEEEecceEEEe-eccccccccCcccchhH
Confidence 56899999999999999999973 234457889999999999999888764 57998744 688742 2455677788
Q ss_pred HHHHHhc
Q 031531 128 EAWLSQM 134 (158)
Q Consensus 128 ~~~L~~~ 134 (158)
..++...
T Consensus 119 isf~~~r 125 (248)
T KOG0913|consen 119 ISFEEHR 125 (248)
T ss_pred HHHHHhh
Confidence 7777543
No 226
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.46 E-value=0.12 Score=39.98 Aligned_cols=36 Identities=28% Similarity=0.640 Sum_probs=29.8
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId 91 (158)
..++||++|.|+.|+-+-++|+++. ...++--|||-
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~le--------deY~ilrVNIl 38 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELE--------DEYDILRVNIL 38 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhh--------ccccEEEEEee
Confidence 4589999999999999999998872 25677777775
No 227
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=93.44 E-value=0.32 Score=41.12 Aligned_cols=63 Identities=25% Similarity=0.371 Sum_probs=48.7
Q ss_pred CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhc--CCccceEEEeccCCeEEEecCCCHHHHHHHHHhc
Q 031531 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY--QYEIPVLARVLSDGTEVLMACINRFRIEAWLSQM 134 (158)
Q Consensus 57 gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~eky--g~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~ 134 (158)
.|++|++.-..|.... ..+..+.||+..-|+++... +-.+|+|. .||+.. -|-++|+++|++.
T Consensus 20 dcpf~qr~~m~L~~k~--------~~f~vttVd~~~kp~~f~~~sp~~~~P~l~---~d~~~~----tDs~~Ie~~Lee~ 84 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKG--------VPFKVTTVDLSRKPEWFLDISPGGKPPVLK---FDEKWV----TDSDKIEEFLEEK 84 (221)
T ss_pred CChhHHHHHHHHHHcC--------CCceEEEeecCCCcHHHHhhCCCCCCCeEE---eCCcee----ccHHHHHHHHHHh
Confidence 5999999999998652 26788899999888877665 35699999 688644 5668888888653
No 228
>PRK09301 circadian clock protein KaiB; Provisional
Probab=93.15 E-value=0.37 Score=36.33 Aligned_cols=88 Identities=19% Similarity=0.151 Sum_probs=59.4
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEecCCC
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACIN 123 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~grfd 123 (158)
...-.++||-...=|.=.++.+-|.+... .... ..++++.|||.++|++.+.++. -+|.|+.+...-.....|.+
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE--~~l~-g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDl- 79 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILE--TEFK-GVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDL- 79 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHH--HhcC-CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeeccc-
Confidence 34556888888888888888777777641 1122 2489999999999999999996 58999853222223446644
Q ss_pred HHHHHHHHHhcCCC
Q 031531 124 RFRIEAWLSQMSLD 137 (158)
Q Consensus 124 ~d~L~~~L~~~~l~ 137 (158)
.+..+.|...++.
T Consensus 80 -sd~~kVL~~L~l~ 92 (103)
T PRK09301 80 -SDREKVLIGLDLL 92 (103)
T ss_pred -ccHHHHHHhcCCC
Confidence 4455566666553
No 229
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=92.99 E-value=0.15 Score=37.62 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=33.8
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH---HHHHhcCCccceEE
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQYEIPVLA 108 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~---el~ekyg~~VPVL~ 108 (158)
.+|...||+.|......|.+... .....++.+--|..+..+ ++.++++...|++.
T Consensus 34 ~f~~~~~c~~C~~~~~~l~~~~~---~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~ 91 (149)
T cd03018 34 VFFPLAFTPVCTKELCALRDSLE---LFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLS 91 (149)
T ss_pred EEeCCCCCccHHHHHHHHHHHHH---HHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEec
Confidence 34448999999988777766521 112346777777665432 24455666677654
No 230
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=92.70 E-value=0.31 Score=42.02 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=52.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--C-----C----HH-------HHHhcCC-c--cc
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T-----N----PE-------WEKSYQY-E--IP 105 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~-----d----~e-------l~ekyg~-~--VP 105 (158)
.--|.|||..||.-|--+-+.|.++. ...++-=--..+| + | ++ +.+.++. + .|
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a------~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTP 115 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLA------DDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTP 115 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhc------cCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCc
Confidence 34599999999999999999999983 3333311112222 1 2 12 2222332 3 58
Q ss_pred eEEEeccCCeEEEecCCCHHHHHHHHHhcC
Q 031531 106 VLARVLSDGTEVLMACINRFRIEAWLSQMS 135 (158)
Q Consensus 106 VL~i~~idGe~i~~grfd~d~L~~~L~~~~ 135 (158)
..+ +||.....| =|+.+|+.+|....
T Consensus 116 Qav---vnGr~~~~G-ad~~~i~~~i~a~~ 141 (261)
T COG5429 116 QAV---VNGRVHANG-ADPGAIEDAIAAMA 141 (261)
T ss_pred hhe---eechhhhcC-CCHHHHHHHHHHhh
Confidence 888 799988777 78888888887655
No 231
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=92.50 E-value=0.2 Score=35.55 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=41.8
Q ss_pred CCCceEEEEeCC-CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH---HHHHhcCCccceEE
Q 031531 45 SSTRKLVLYSKP-GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQYEIPVLA 108 (158)
Q Consensus 45 ~~~~~VtLYTkp-gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~---el~ekyg~~VPVL~ 108 (158)
..++.|..|... ||+.|......|.++.. ..+..++.+--|..+..+ ++.++++...|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~---~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~ 88 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYK---KYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLS 88 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHH---HHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhh---hhccceEEeeecccccccchhhhhhhhcccccccc
Confidence 445566666666 99999888777776531 113457888888886544 35566788888887
No 232
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.45 Score=39.53 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=53.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH---HHHHhcCC-ccceEEEeccCCeEEEecCC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQY-EIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~---el~ekyg~-~VPVL~i~~idGe~i~~grf 122 (158)
|+..+|+--+..++|+-+..++.-. +++|++..++..+ ++..+..+ ++|++. +||..+...
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a----------~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~---vDg~~i~QS-- 65 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYA----------GVSFEDKRITMEDAWEELKDKMPFGQLPVLE---VDGKKLVQS-- 65 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhc----------CCCcceeeeccccchhhhcccCCCCCCCEEe---ECCEeeccH--
Confidence 4567888899999999999999776 8999999998654 33444444 599999 899888654
Q ss_pred CHHHHHHHHH
Q 031531 123 NRFRIEAWLS 132 (158)
Q Consensus 123 d~d~L~~~L~ 132 (158)
..|.+.|+
T Consensus 66 --~AI~RyLA 73 (206)
T KOG1695|consen 66 --RAILRYLA 73 (206)
T ss_pred --HHHHHHHH
Confidence 66666664
No 233
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=92.02 E-value=0.25 Score=36.00 Aligned_cols=60 Identities=8% Similarity=0.090 Sum_probs=36.0
Q ss_pred CCceEEEEe-CCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH---HHHhcCCccceEE
Q 031531 46 STRKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQYEIPVLA 108 (158)
Q Consensus 46 ~~~~VtLYT-kpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e---l~ekyg~~VPVL~ 108 (158)
.+.-+..|. +.||+.|......|.++.+ .....++++.-|.++..++ +.++++...|++.
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~---~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~ 86 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYE---EFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLS 86 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHH---HHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 344455555 6899999987666665421 1123467777777765443 3345666777665
No 234
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.36 Score=45.01 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=56.2
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceEEEeccCCe--EE-EecCCCHH
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGT--EV-LMACINRF 125 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i~~idGe--~i-~~grfd~d 125 (158)
-++-|.+|||+.|.+++..++++..-. ....++-+-++|.+.|+--..++.. .|+|.--..+++ .+ ..|.=+-+
T Consensus 387 VLvEfyAPWCgHCk~laP~~eeLAe~~--~~~~~vviAKmDaTaNd~~~~~~~~-fPTI~~~pag~k~~pv~y~g~R~le 463 (493)
T KOG0190|consen 387 VLVEFYAPWCGHCKALAPIYEELAEKY--KDDENVVIAKMDATANDVPSLKVDG-FPTILFFPAGHKSNPVIYNGDRTLE 463 (493)
T ss_pred eEEEEcCcccchhhhhhhHHHHHHHHh--cCCCCcEEEEeccccccCccccccc-cceEEEecCCCCCCCcccCCCcchH
Confidence 366788999999999999998875322 2345889999999988753223322 788874222221 22 23434557
Q ss_pred HHHHHHHhcCC
Q 031531 126 RIEAWLSQMSL 136 (158)
Q Consensus 126 ~L~~~L~~~~l 136 (158)
++..++.+.+-
T Consensus 464 ~~~~fi~~~a~ 474 (493)
T KOG0190|consen 464 DLKKFIKKSAT 474 (493)
T ss_pred HHHhhhccCCC
Confidence 88888877664
No 235
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=91.62 E-value=0.71 Score=34.99 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=39.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC-------CH----HHHHh-cCCccceEE
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-------NP----EWEKS-YQYEIPVLA 108 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~-------d~----el~ek-yg~~VPVL~ 108 (158)
.+.-+..|..+||+ |......|.++. +.....++.+--|++++ ++ ++.++ ++...|++.
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~---~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~ 92 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALY---EKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFA 92 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHH---HHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeee
Confidence 34567778999999 998888887763 11233567777776642 22 24444 677788875
No 236
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=91.57 E-value=0.87 Score=38.99 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=59.1
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEEe-------
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVLM------- 119 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~~------- 119 (158)
.-|+.+..++++-|..+-..|..+. ..+..+.|..|.-..-+ +..+|.. .+|.|++ +.+|+.+..
T Consensus 148 ~VVVHiY~~~~~~C~~mn~~L~~LA-----~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtllv-Yk~G~l~~~~V~l~~~ 220 (265)
T PF02114_consen 148 WVVVHIYEPGFPRCEIMNSCLECLA-----RKYPEVKFVKIRASKCP-ASENFPDKNLPTLLV-YKNGDLIGNFVGLTDL 220 (265)
T ss_dssp EEEEEEE-TTSCCHHHHHHHHHHHH-----HH-TTSEEEEEEECGCC-TTTTS-TTC-SEEEE-EETTEEEEEECTGGGC
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHH-----HhCCceEEEEEehhccC-cccCCcccCCCEEEE-EECCEEEEeEEehHHh
Confidence 3477888999999999999999885 35667889998876544 6677875 6899984 568875431
Q ss_pred --cCCCHHHHHHHHHhcCC
Q 031531 120 --ACINRFRIEAWLSQMSL 136 (158)
Q Consensus 120 --grfd~d~L~~~L~~~~l 136 (158)
..|+.++|+.+|.+.|+
T Consensus 221 ~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 221 LGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp T-TT--HHHHHHHHHTTTS
T ss_pred cCCCCCHHHHHHHHHHcCC
Confidence 24778899999999997
No 237
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.31 E-value=0.21 Score=39.01 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=37.0
Q ss_pred CCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh-------cCC--ccceEEE
Q 031531 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS-------YQY--EIPVLAR 109 (158)
Q Consensus 55 kpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek-------yg~--~VPVL~i 109 (158)
++|||.|..|+.++.+... +...+.-|..+++-+-|.|+.. .+. .||+|..
T Consensus 42 qSWCPdCV~AEPvi~~alk----~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALK----HAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred CcCCchHHHhhHHHHHHHH----hCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence 5799999999999988641 3345778899999876665543 333 4898883
No 238
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=91.09 E-value=0.42 Score=38.49 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=38.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH-------------------------HHHhcCC
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE-------------------------WEKSYQY 102 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e-------------------------l~ekyg~ 102 (158)
.-...|+.-||+.|...-..|.++..--+ ....++++.-|+=|.+.+ +.++|+.
T Consensus 35 vV~lyFsA~wC~pCR~FTP~Lk~fYe~l~-~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v 113 (157)
T KOG2501|consen 35 VVGLYFSAHWCPPCRDFTPILKDFYEELK-DNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEV 113 (157)
T ss_pred EEEEEEEEEECCchhhCCchHHHHHHHHH-hcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhccc
Confidence 33445668899999987666655421000 111234444444443332 2224554
Q ss_pred -ccceEEEeccCCeEE
Q 031531 103 -EIPVLARVLSDGTEV 117 (158)
Q Consensus 103 -~VPVL~i~~idGe~i 117 (158)
+||.+.+...||+.+
T Consensus 114 ~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 114 KGIPALVILKPDGTVV 129 (157)
T ss_pred CcCceeEEecCCCCEe
Confidence 589999877888765
No 239
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=91.04 E-value=0.62 Score=32.92 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=42.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEE
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLAR 109 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i 109 (158)
.+.||-...=+.=.++.+-|.+... +.. ...++++.|||.++|++.+.++. -+|.|+.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e--~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILE--ELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHH--Hhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 4567777666777777777766641 112 45789999999999999999996 5899873
No 240
>PTZ00256 glutathione peroxidase; Provisional
Probab=90.91 E-value=0.56 Score=37.03 Aligned_cols=55 Identities=11% Similarity=0.256 Sum_probs=35.0
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC-------CHH----H-HHhcCCccceEE
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-------NPE----W-EKSYQYEIPVLA 108 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~-------d~e----l-~ekyg~~VPVL~ 108 (158)
.++..+||+.|.+-...|.++. +.....++.+--|++++ +++ + .++++...|++.
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~---~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~ 112 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELY---KQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQ 112 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHH---HHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCce
Confidence 4678999999998777777652 11223467777776541 212 2 235677788874
No 241
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=90.71 E-value=0.84 Score=31.99 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=39.6
Q ss_pred CCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceEEEeccCCeEEEecCCCHHHHHHHHHh
Q 031531 56 PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 56 pgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~ 133 (158)
+..+.|-++.-+|+.. |++|+.++....+.. .- .-.||+|. .||+.+. +-..|..+|.+
T Consensus 15 ~~~~~~~kv~~~L~el----------glpye~~~~~~~~~~-~P-~GkVP~L~---~dg~vI~----eS~aIl~yL~~ 73 (74)
T cd03079 15 PDNASCLAVQTFLKMC----------NLPFNVRCRANAEFM-SP-SGKVPFIR---VGNQIVS----EFGPIVQFVEA 73 (74)
T ss_pred CCCCCHHHHHHHHHHc----------CCCcEEEecCCcccc-CC-CCcccEEE---ECCEEEe----CHHHHHHHHhc
Confidence 3455677999999887 899998876432111 11 13599998 6887653 44788887764
No 242
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.55 E-value=0.43 Score=31.56 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=27.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId 91 (158)
|.+|..+.||+|..+.+.|++... ....++.++.+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~----~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLY----ADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHh----hcCCcEEEEEeccc
Confidence 578999999999999999998721 12335666555543
No 243
>PLN02412 probable glutathione peroxidase
Probab=90.37 E-value=0.5 Score=36.85 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=35.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC-------CC-HHH----HHhcCCccceEE
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------TN-PEW----EKSYQYEIPVLA 108 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId-------~d-~el----~ekyg~~VPVL~ 108 (158)
..-|..|..+||+.|......|.++. +.....++.+--|+.+ ++ ++. .++++...|++.
T Consensus 30 k~vlv~f~a~~C~~c~~e~~~l~~l~---~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~ 100 (167)
T PLN02412 30 KVLLIVNVASKCGLTDSNYKELNVLY---EKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFD 100 (167)
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHH---HHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEe
Confidence 45566688999999997555555542 1122346777777653 12 222 355677777764
No 244
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=90.14 E-value=3.7 Score=29.88 Aligned_cols=72 Identities=13% Similarity=0.042 Sum_probs=49.4
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceEEEeccCCe---EEEecC
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGT---EVLMAC 121 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i~~idGe---~i~~gr 121 (158)
.....+.+|+.++ ..|++++++|+++..+ ...|++++.|..+ ..|.+.+. .+|+ ..+.|-
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~l-----SdkI~~~~~~~~~----------~~P~~~i~-~~~~~~gIrF~Gi 80 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASL-----SDKITLEEDNDDE----------RKPSFSIN-RPGEDTGIRFAGI 80 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHh-----CCceEEEEecCCC----------CCCEEEEe-cCCCcccEEEEec
Confidence 3445688899888 9999999999998633 2468887766532 47888753 2332 456665
Q ss_pred CCHHHHHHHHHh
Q 031531 122 INRFRIEAWLSQ 133 (158)
Q Consensus 122 fd~d~L~~~L~~ 133 (158)
..-.++..++..
T Consensus 81 P~GhEf~Slila 92 (94)
T cd02974 81 PMGHEFTSLVLA 92 (94)
T ss_pred CCchhHHHHHHH
Confidence 666777776653
No 245
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=89.85 E-value=0.4 Score=40.07 Aligned_cols=53 Identities=17% Similarity=0.351 Sum_probs=35.9
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH-HHHH-hcC-CccceEEEeccCCe
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-EWEK-SYQ-YEIPVLARVLSDGT 115 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~-el~e-kyg-~~VPVL~i~~idGe 115 (158)
.+|-=++||+|.++.-+.--+ ++++++.-...|+ +--- .-| ..||+|.. .||+
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~----------nipve~~vL~nDDe~Tp~rmiG~KqVPiL~K--edg~ 57 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLK----------NIPVELHVLLNDDEETPIRMIGQKQVPILQK--EDGR 57 (215)
T ss_pred ceeEeccChHHHHHHHHhhcc----------CCChhhheeccCcccChhhhhcccccceEEc--cccc
Confidence 367778999999998877544 6777777666443 3222 234 47999995 4665
No 246
>PTZ00057 glutathione s-transferase; Provisional
Probab=89.79 E-value=2.6 Score=33.32 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=48.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH-HHHH--h-----cC--CccceEEEeccCCeEEE
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-EWEK--S-----YQ--YEIPVLARVLSDGTEVL 118 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~-el~e--k-----yg--~~VPVL~i~~idGe~i~ 118 (158)
+++||+-+.-+.|+.+.-+|+.. |++|+.+.+++.. ++.+ + -. -.||+|. .||..+.
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~----------gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~---~~~~~l~ 70 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYL----------GIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILE---MDNIIFA 70 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHc----------CCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEE---ECCEEEe
Confidence 38899988999999999999887 8999999886432 3221 1 11 2599999 6776553
Q ss_pred ecCCCHHHHHHHHHhc
Q 031531 119 MACINRFRIEAWLSQM 134 (158)
Q Consensus 119 ~grfd~d~L~~~L~~~ 134 (158)
. -..|..+|.+.
T Consensus 71 e----S~AI~~YLa~~ 82 (205)
T PTZ00057 71 Q----SQAIVRYLSKK 82 (205)
T ss_pred c----HHHHHHHHHHH
Confidence 3 36777777554
No 247
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=89.55 E-value=0.57 Score=34.76 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=32.3
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC
Q 031531 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (158)
Q Consensus 44 ~~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId 91 (158)
+-....|++|....||+|.+..+.+.+.. ++-.+...+.|..+++-
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~--~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLL--KKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHH--HHHTTTTTEEEEEEESS
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhh--hhccCCCceEEEEEEcc
Confidence 34466899999999999999988876542 11122457888888875
No 248
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=89.31 E-value=6.9 Score=29.43 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=58.9
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC---ccceEEEeccCCeEEE---ecCC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSDGTEVL---MACI 122 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~---~VPVL~i~~idGe~i~---~grf 122 (158)
.+.++........+..++.|.+... .....+.|..+|.+..+++...+|. .+|++++...++.... .+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~----~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~ 173 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAK----KFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEI 173 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHH----CTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCG
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHH----hcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCC
Confidence 5777777777778888888877642 1234589999999988888889885 6999997432333333 3668
Q ss_pred CHHHHHHHHH
Q 031531 123 NRFRIEAWLS 132 (158)
Q Consensus 123 d~d~L~~~L~ 132 (158)
+++.|.++|+
T Consensus 174 ~~~~i~~Fl~ 183 (184)
T PF13848_consen 174 TPESIEKFLN 183 (184)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHhc
Confidence 8899999986
No 249
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=88.63 E-value=1.6 Score=32.02 Aligned_cols=59 Identities=19% Similarity=0.167 Sum_probs=44.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEe
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARV 110 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~ 110 (158)
.+++|-...=|.-.++-+-|.+... ..... ..+++.|||.++|++.+.++. -.|.|+.+
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e--~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLIK~ 64 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILE--TEFQG-VYALKVIDVLKNPQLAEEDKILATPTLSKI 64 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHH--HhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHhhc
Confidence 4677877777777777777776641 11222 489999999999999999996 58998843
No 250
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=88.26 E-value=1.3 Score=33.48 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=32.6
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId 91 (158)
.....|+.|+.+.||+|..+.+.+.+... + ...++.++.+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~--~--~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVK--K--LPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHH--h--CCCCceEEEcCCc
Confidence 56778999999999999999999987631 1 1236677766655
No 251
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=88.11 E-value=1.8 Score=31.93 Aligned_cols=57 Identities=9% Similarity=0.097 Sum_probs=36.3
Q ss_pred CceEEEEeCCC-CCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH---HHHHhcCC-ccceEE
Q 031531 47 TRKLVLYSKPG-CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQY-EIPVLA 108 (158)
Q Consensus 47 ~~~VtLYTkpg-C~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~---el~ekyg~-~VPVL~ 108 (158)
++-|..|...| |+.|......|.++.. +..++.+--|+++..+ ++.++++. .+|++.
T Consensus 27 k~vvl~f~~~~~c~~C~~e~~~l~~~~~-----~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~ 88 (143)
T cd03014 27 KVKVISVFPSIDTPVCATQTKRFNKEAA-----KLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLS 88 (143)
T ss_pred CeEEEEEEcCCCCCcCHHHHHHHHHHHH-----hcCCCEEEEEECCCHHHHHHHHHhcCCCCceEee
Confidence 34455555655 7999999999988742 2347888888886533 24444553 456554
No 252
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=3.5 Score=33.78 Aligned_cols=69 Identities=19% Similarity=0.353 Sum_probs=48.0
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--C----CHHHHHhcCC-ccceEEEeccCCeEEEec
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T----NPEWEKSYQY-EIPVLARVLSDGTEVLMA 120 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~----d~el~ekyg~-~VPVL~i~~idGe~i~~g 120 (158)
+++++|+.++=+.|..+.-.++.+ |++|+.+.|+ . .|++.+..-. .||+++ .+|-.+
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~----------~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~---d~~~~l--- 64 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKEL----------GLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALE---DGGLTL--- 64 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHc----------CCceeEEEeeccccccCCHHHHhcCcCCCCCeEe---cCCeEE---
Confidence 357899999999999999999987 7777777555 3 3455545443 799998 344333
Q ss_pred CCCHHHHHHHHHh
Q 031531 121 CINRFRIEAWLSQ 133 (158)
Q Consensus 121 rfd~d~L~~~L~~ 133 (158)
++..+|...|.+
T Consensus 65 -~eS~AI~~Yl~~ 76 (226)
T KOG0867|consen 65 -WESHAILRYLAE 76 (226)
T ss_pred -eeHHHHHHHHHH
Confidence 244666666654
No 253
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=87.82 E-value=4.4 Score=27.85 Aligned_cols=58 Identities=9% Similarity=0.232 Sum_probs=34.9
Q ss_pred CchHHHHHHHHHhhccCCCCCCCCcceEEEEcC--CC-----HHHHH-hc--C---CccceEEEeccCCeEEEecCCCHH
Q 031531 59 CLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN-----PEWEK-SY--Q---YEIPVLARVLSDGTEVLMACINRF 125 (158)
Q Consensus 59 ~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId--~d-----~el~e-ky--g---~~VPVL~i~~idGe~i~~grfd~d 125 (158)
+.|....-+|+.. +++|+.+.++ +. +++.+ .+ + -.||+|. .||..+... .
T Consensus 10 ~~~~~~~~~l~~~----------gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~---~~g~~l~ES----~ 72 (82)
T cd03075 10 GLAQPIRLLLEYT----------GEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYI---DGDVKLTQS----N 72 (82)
T ss_pred cccHHHHHHHHHc----------CCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEE---ECCEEEeeh----H
Confidence 4666777777776 6666655554 31 23322 11 1 2699998 577655444 7
Q ss_pred HHHHHHHh
Q 031531 126 RIEAWLSQ 133 (158)
Q Consensus 126 ~L~~~L~~ 133 (158)
.|..+|.+
T Consensus 73 AIl~YLa~ 80 (82)
T cd03075 73 AILRYIAR 80 (82)
T ss_pred HHHHHHhh
Confidence 88888764
No 254
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=87.80 E-value=1.2 Score=32.36 Aligned_cols=61 Identities=8% Similarity=0.110 Sum_probs=37.5
Q ss_pred CCCceEEEEe-CCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH---HHHhc-CCccceEE
Q 031531 45 SSTRKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSY-QYEIPVLA 108 (158)
Q Consensus 45 ~~~~~VtLYT-kpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e---l~eky-g~~VPVL~ 108 (158)
...+.+..|. ..||+.|......|.++.. .....++.+.-|..+..++ +.+++ +...|++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~---~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~ 86 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAE---EFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLS 86 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHH---HHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEE
Confidence 3444555555 7899999998777776531 0113477888888764332 34455 55677665
No 255
>PRK10542 glutathionine S-transferase; Provisional
Probab=87.59 E-value=2.4 Score=32.80 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=36.1
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC--C----HHHHHhcC--CccceEEEeccCCeEEEecCC
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N----PEWEKSYQ--YEIPVLARVLSDGTEVLMACI 122 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~--d----~el~ekyg--~~VPVL~i~~idGe~i~~grf 122 (158)
+||+.++ +.+....-+|+++ |++|+.+.|+- . .+.+.+.+ -.||||.+ .||..+ +
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~----------gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~--~~g~~l----~ 64 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRES----------GLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLL--DDGTLL----T 64 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHc----------CCCceEEEeecccccccCChHHHHhCcCCCCCeEEe--CCCcEe----e
Confidence 4666543 2244455566665 67777665542 1 12233443 36999972 255555 3
Q ss_pred CHHHHHHHHHhc
Q 031531 123 NRFRIEAWLSQM 134 (158)
Q Consensus 123 d~d~L~~~L~~~ 134 (158)
+-..|.++|.+.
T Consensus 65 eS~aI~~YL~~~ 76 (201)
T PRK10542 65 EGVAIMQYLADS 76 (201)
T ss_pred cHHHHHHHHHHh
Confidence 446677776543
No 256
>PRK11752 putative S-transferase; Provisional
Probab=87.24 E-value=4.9 Score=33.50 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=43.0
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEE--EcCC----CHHHHHhcC-CccceEEEeccCC---eEEE
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVR--DITT----NPEWEKSYQ-YEIPVLARVLSDG---TEVL 118 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeI--DId~----d~el~ekyg-~~VPVL~i~~idG---e~i~ 118 (158)
.++||+.+ |+.|.++.-+|+++.. ..-.+++|+.+ |+.. .+++.+..- -.||+|+. .+| ..+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~----~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~--~dg~~~~~L- 115 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLA----LGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD--RSGNPPIRV- 115 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHh----ccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe--CCCCCCeEE-
Confidence 58999965 9999999999987410 01114555554 4433 234444322 36999983 223 234
Q ss_pred ecCCCHHHHHHHHHhc
Q 031531 119 MACINRFRIEAWLSQM 134 (158)
Q Consensus 119 ~grfd~d~L~~~L~~~ 134 (158)
++-..|.++|.+.
T Consensus 116 ---~ES~AIl~YL~~~ 128 (264)
T PRK11752 116 ---FESGAILLYLAEK 128 (264)
T ss_pred ---EcHHHHHHHHHHh
Confidence 2335666666543
No 257
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=85.69 E-value=2.7 Score=30.60 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=38.4
Q ss_pred CCceEEEEeCCCCCc-hHHHHHHHHHhhccCCCCCCC---CcceEEEEcCC---CHH----HHHhcCCccceEE
Q 031531 46 STRKLVLYSKPGCCL-CDGLKEKLQAAFLLSGPDSLH---DVDLQVRDITT---NPE----WEKSYQYEIPVLA 108 (158)
Q Consensus 46 ~~~~VtLYTkpgC~l-C~~aK~~L~~~~~~~~~~~~~---~I~~eeIDId~---d~e----l~ekyg~~VPVL~ 108 (158)
....|..|..+||+. |......|.++.. ..... ++.+--|.++. +++ +.++++...|.+.
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~---~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~~~~~l~ 92 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALK---QLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGPGWIGLT 92 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHH---HhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEE
Confidence 456788889999997 9988887877531 11222 48888888763 233 3344555566665
No 258
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.88 E-value=3 Score=36.55 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeE---EEec
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE---VLMA 120 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~---i~~g 120 (158)
.+...++.|..|||+.|..++...+++... -....++.+-.+|.+.+..+..+++. .-|.+.. ..+|.. -.-+
T Consensus 161 ~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~--~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~-f~~~~~~~~~~~~ 237 (383)
T KOG0191|consen 161 SDADWLVEFYAPWCGHCKKLAPEWEKLAKL--LKSKENVELGKIDATVHKSLASRLEVRGYPTLKL-FPPGEEDIYYYSG 237 (383)
T ss_pred cCcceEEEEeccccHHhhhcChHHHHHHHH--hccCcceEEEeeccchHHHHhhhhcccCCceEEE-ecCCCcccccccc
Confidence 345568888999999999998888886320 01134667777777767777788886 4677753 244443 1234
Q ss_pred CCCHHHHHHHHHhcCCCc
Q 031531 121 CINRFRIEAWLSQMSLDC 138 (158)
Q Consensus 121 rfd~d~L~~~L~~~~l~~ 138 (158)
.-+.+.|.+++....-+.
T Consensus 238 ~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 238 LRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cccHHHHHHHHHhhcCCC
Confidence 456789999987776653
No 259
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=84.56 E-value=2.3 Score=34.31 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=41.1
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC-------C-HH---HHH-hcCCccceEEEeccC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-------N-PE---WEK-SYQYEIPVLARVLSD 113 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~-------d-~e---l~e-kyg~~VPVL~i~~id 113 (158)
..+-++.++..||++|.+ -..|+++. ......++++--+..++ + ++ +.+ +|+...|++-...++
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~---~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvn 100 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQ---KAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVN 100 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHH---HHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccC
Confidence 356688899999999975 44555542 11233477777776642 2 22 333 578889999533356
Q ss_pred Ce
Q 031531 114 GT 115 (158)
Q Consensus 114 Ge 115 (158)
|+
T Consensus 101 G~ 102 (183)
T PRK10606 101 GE 102 (183)
T ss_pred CC
Confidence 65
No 260
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=83.58 E-value=1.7 Score=32.65 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=31.1
Q ss_pred CceEEEEe-CCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH---HHHhcCCccceEE
Q 031531 47 TRKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQYEIPVLA 108 (158)
Q Consensus 47 ~~~VtLYT-kpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e---l~ekyg~~VPVL~ 108 (158)
+.-|..|. +.+|+.|......|.+... .....++.+--|.++..++ +.++++...|++.
T Consensus 31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~---~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~ 93 (154)
T PRK09437 31 QRVLVYFYPKAMTPGCTVQACGLRDNMD---ELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLS 93 (154)
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHH---HHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEE
Confidence 34455555 4578889876655554321 1123467777777664433 2334444455443
No 261
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.84 E-value=9.6 Score=34.71 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=45.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceEEEeccCCe---EEEecC
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGT---EVLMAC 121 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i~~idGe---~i~~gr 121 (158)
.....+.+|+. .|..|++++++|+++..+ ...|++++.|.. ...|.+.+. .+|+ ..+.|-
T Consensus 18 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~-----s~~i~~~~~~~~----------~~~p~~~~~-~~~~~~~i~f~g~ 80 (517)
T PRK15317 18 ERPIELVASLD-DSEKSAELKELLEEIASL-----SDKITVEEDSLD----------VRKPSFSIT-RPGEDTGVRFAGI 80 (517)
T ss_pred CCCEEEEEEeC-CCchHHHHHHHHHHHHHh-----CCceEEEEccCC----------CCCCEEEEE-cCCccceEEEEec
Confidence 34456888888 799999999999998632 246777775532 237887753 2442 445554
Q ss_pred CCHHHHHHHH
Q 031531 122 INRFRIEAWL 131 (158)
Q Consensus 122 fd~d~L~~~L 131 (158)
..-.++..++
T Consensus 81 P~g~Ef~s~i 90 (517)
T PRK15317 81 PMGHEFTSLV 90 (517)
T ss_pred CccHHHHHHH
Confidence 4445555554
No 262
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.72 E-value=9.8 Score=34.70 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=44.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceEEEeccCCe---EEEecCC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGT---EVLMACI 122 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i~~idGe---~i~~grf 122 (158)
....+.+|+. .|..|++++++|+++..+ .+.|++++.|.+++ ..|.+.+. .+|+ ..|.|-.
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~-----s~ki~~~~~~~~~~---------~~p~~~~~-~~~~~~~i~f~g~P 82 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASL-----SDKISLTQNTADTL---------RKPSFTIL-RDGADTGIRFAGIP 82 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHh-----CCCeEEEEecCCcC---------CCCeEEEe-cCCcccceEEEecC
Confidence 3456777887 699999999999998632 34788887775432 35777642 3443 3445544
Q ss_pred CHHHHHHHH
Q 031531 123 NRFRIEAWL 131 (158)
Q Consensus 123 d~d~L~~~L 131 (158)
.-.++..++
T Consensus 83 ~g~Ef~s~i 91 (515)
T TIGR03140 83 GGHEFTSLV 91 (515)
T ss_pred CcHHHHHHH
Confidence 444444444
No 263
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=81.72 E-value=12 Score=29.63 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=16.9
Q ss_pred ceEEEEe-CCCCCchHHHHHHHHHh
Q 031531 48 RKLVLYS-KPGCCLCDGLKEKLQAA 71 (158)
Q Consensus 48 ~~VtLYT-kpgC~lC~~aK~~L~~~ 71 (158)
..|..|. ..||+.|......|.+.
T Consensus 33 ~vvl~F~p~~~cp~C~~el~~l~~~ 57 (187)
T TIGR03137 33 WSVFFFYPADFTFVCPTELEDLADK 57 (187)
T ss_pred EEEEEEECCCcCCcCHHHHHHHHHH
Confidence 3444555 89999999877666544
No 264
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=81.56 E-value=9 Score=27.41 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=44.4
Q ss_pred EeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH--HHHHhcCC------ccceEEEeccCCeEEEecCCCH
Q 031531 53 YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSYQY------EIPVLARVLSDGTEVLMACINR 124 (158)
Q Consensus 53 YTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~--el~ekyg~------~VPVL~i~~idGe~i~~grfd~ 124 (158)
|--..|++|....+.+.+.. ..-.++-+|+..++ ++.+.++. +.-.+. .+|+....| .
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~g~~~~~G---~ 67 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD--------RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLI---DDGERVYRG---S 67 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC--------CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEe---cCCCEEEEc---H
Confidence 44568999999999999872 23478888885433 34455553 233333 577644444 4
Q ss_pred HHHHHHHHhcCC
Q 031531 125 FRIEAWLSQMSL 136 (158)
Q Consensus 125 d~L~~~L~~~~l 136 (158)
+.+.+.+.....
T Consensus 68 ~A~~~l~~~~~~ 79 (114)
T PF04134_consen 68 DAVLRLLRRLPG 79 (114)
T ss_pred HHHHHHHHHcCc
Confidence 777777766554
No 265
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=81.19 E-value=1.5 Score=33.50 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=25.6
Q ss_pred HhcC-CccceEEEeccCCeEEEecCCCHHHHHHHHH
Q 031531 98 KSYQ-YEIPVLARVLSDGTEVLMACINRFRIEAWLS 132 (158)
Q Consensus 98 ekyg-~~VPVL~i~~idGe~i~~grfd~d~L~~~L~ 132 (158)
.++| .++|.++ +||+..++|.-+.+.|+++|+
T Consensus 161 ~~~gv~GvP~~v---v~g~~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 161 RQLGVFGVPTFV---VNGKYRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHTTCSSSSEEE---ETTTEEEESCSSHHHHHHHH-
T ss_pred HHcCCcccCEEE---ECCEEEEECCCCHHHHHHHhC
Confidence 3456 4799999 799878899888899998875
No 266
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=80.52 E-value=4.9 Score=36.42 Aligned_cols=84 Identities=12% Similarity=0.099 Sum_probs=56.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCC--CCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEE-ecC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL--HDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL-MAC 121 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~--~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~-~gr 121 (158)
.++..+-|..|||..|.++..+.++... +... -++..-+.|-+.-+....++|. +-|++..- .+|..+- .|.
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~---elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~-kgd~a~dYRG~ 118 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGH---ELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFF-KGDHAIDYRGG 118 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCc---chhhcCCceeecccccccchhhHhhhccCCCceEEEe-cCCeeeecCCC
Confidence 4577889999999999999999988731 1122 2445556677778889999996 68988742 3443333 344
Q ss_pred CCHHHHHHHHHh
Q 031531 122 INRFRIEAWLSQ 133 (158)
Q Consensus 122 fd~d~L~~~L~~ 133 (158)
=.++.|-++-.+
T Consensus 119 R~Kd~iieFAhR 130 (468)
T KOG4277|consen 119 REKDAIIEFAHR 130 (468)
T ss_pred ccHHHHHHHHHh
Confidence 556666666544
No 267
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=80.35 E-value=29 Score=28.73 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCCCCceEEEEeCC-----CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh----cCCc-c--------
Q 031531 43 SSSSTRKLVLYSKP-----GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQYE-I-------- 104 (158)
Q Consensus 43 ~~~~~~~VtLYTkp-----gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek----yg~~-V-------- 104 (158)
+-....+|++|..+ .=.+=..++++|++... ....+|.++.||-+.+++..++ +|.. +
T Consensus 22 ~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~----~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~~~~~~~ 97 (271)
T PF09822_consen 22 SLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYAR----YSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQIEIVDNG 97 (271)
T ss_pred hCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHH----hCCCceEEEEECCCCChHHHHHHHHhcCCCccceeecccc
Confidence 34456789999887 56677788888988742 2223799999999888876555 5532 2
Q ss_pred --------ceEEEeccCCeEEEecCCC-------HHHHHHHHHhcCCC
Q 031531 105 --------PVLARVLSDGTEVLMACIN-------RFRIEAWLSQMSLD 137 (158)
Q Consensus 105 --------PVL~i~~idGe~i~~grfd-------~d~L~~~L~~~~l~ 137 (158)
+.++++ -+++....+.++ +.+|-++|.....+
T Consensus 98 ~~~~~~~~~~~~v~-~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~~ 144 (271)
T PF09822_consen 98 KASIVTVYGGIVVE-YGDREEVIPFLDSMSEFNLEYELTSAIRRVTSD 144 (271)
T ss_pred cccceeecCeEEEE-ECCeEEEeecccccccccHHHHHHHHHHHHhcc
Confidence 333322 223333344455 56888888777664
No 268
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=80.22 E-value=23 Score=27.92 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=46.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCc----cceEEEeccCCeEEEecC
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE----IPVLARVLSDGTEVLMAC 121 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~----VPVL~i~~idGe~i~~gr 121 (158)
+.+..+++---.|++|.....+|.+. .....+.|..+.=+....+.+.++.+ .=++++ .+|+..
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~------D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~--~~g~~~---- 73 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRR------DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLV--EAGQLL---- 73 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHh------ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEe--cCCceE----
Confidence 34455566677899999999999886 12234444443333444577777642 233332 345433
Q ss_pred CCHHHHHHHHHhcCCC
Q 031531 122 INRFRIEAWLSQMSLD 137 (158)
Q Consensus 122 fd~d~L~~~L~~~~l~ 137 (158)
+..+.+.+.+.....+
T Consensus 74 ~~sdA~~~i~~~L~~~ 89 (137)
T COG3011 74 VGSDAAIRILRLLPGP 89 (137)
T ss_pred eccHHHHHHHHHCCcc
Confidence 2346676777666543
No 269
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=80.08 E-value=5.1 Score=27.34 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=40.0
Q ss_pred CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceEEEeccCCeEEEecCCCHHHHHHHHHhcC
Q 031531 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQMS 135 (158)
Q Consensus 57 gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~~ 135 (158)
..++|-+++.+|+-. +++|+.+ ...|+.. . =.-.+|++. .+|+.+ + +.+.|.++|.+.+
T Consensus 15 ~sp~clk~~~~Lr~~----------~~~~~v~-~~~n~~~-s-p~gkLP~l~---~~~~~i--~--d~~~Ii~~L~~~~ 73 (73)
T cd03078 15 VDPECLAVLAYLKFA----------GAPLKVV-PSNNPWR-S-PTGKLPALL---TSGTKI--S--GPEKIIEYLRKQG 73 (73)
T ss_pred CCHHHHHHHHHHHcC----------CCCEEEE-ecCCCCC-C-CCCccCEEE---ECCEEe--c--ChHHHHHHHHHcC
Confidence 468999999999775 8899665 3344321 1 123599998 577644 2 4588999987653
No 270
>PRK13190 putative peroxiredoxin; Provisional
Probab=78.82 E-value=15 Score=29.49 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=45.9
Q ss_pred EEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC---------------------------CHHHHHhcCC--
Q 031531 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---------------------------NPEWEKSYQY-- 102 (158)
Q Consensus 52 LYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~---------------------------d~el~ekyg~-- 102 (158)
.|...||+.|..-...|.+... .....++++--+.++. +.++.+.||.
T Consensus 34 ~~p~~~cp~C~~El~~l~~~~~---~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~ 110 (202)
T PRK13190 34 SHPADFTPVCTTEFIAFSRRYE---DFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLID 110 (202)
T ss_pred EEcCCCCCCCHHHHHHHHHHHH---HHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCcc
Confidence 4789999999987666665320 0112244444444442 2234444553
Q ss_pred -----ccceEEEeccCCeEEEe------cCCCHHHHHHHHHhcCC
Q 031531 103 -----EIPVLARVLSDGTEVLM------ACINRFRIEAWLSQMSL 136 (158)
Q Consensus 103 -----~VPVL~i~~idGe~i~~------grfd~d~L~~~L~~~~l 136 (158)
.+|.+++...+|+.... .+-+.+++.+.|+..+.
T Consensus 111 ~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 111 ENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred ccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 26777764446654321 12477888888877654
No 271
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=78.75 E-value=13 Score=29.78 Aligned_cols=40 Identities=10% Similarity=-0.052 Sum_probs=25.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~ 92 (158)
+..|...||+.|......|.++.. .....++++--+.++.
T Consensus 30 lf~~pa~~cp~C~~el~~l~~~~~---~f~~~gv~vigvS~D~ 69 (203)
T cd03016 30 LFSHPADFTPVCTTELGAFAKLAP---EFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEecCCCCCcCHHHHHHHHHHHH---HHHHcCCEEEEEECCC
Confidence 345779999999998777766521 1122356666665553
No 272
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.88 E-value=4.1 Score=35.72 Aligned_cols=78 Identities=14% Similarity=0.257 Sum_probs=52.8
Q ss_pred CCCceEEEEeCC------CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH----HHHhcCC-----ccceEEE
Q 031531 45 SSTRKLVLYSKP------GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE----WEKSYQY-----EIPVLAR 109 (158)
Q Consensus 45 ~~~~~VtLYTkp------gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e----l~ekyg~-----~VPVL~i 109 (158)
-..-.|++|++. .=-.|..+..+|+.+ ++.|+|.||.=|.+ |.+..|. ..|.++
T Consensus 128 gge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf----------~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVF- 196 (281)
T KOG2824|consen 128 GGEDRVVVYTTSLRGVRKTFEDCNAVRAILESF----------RVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVF- 196 (281)
T ss_pred CCCceEEEEEcccchhhhhHHHHHHHHHHHHhC----------ceEEEEecccccHHHHHHHHHHHhcccccCccCeEE-
Confidence 334489999864 234699999999887 89999999997765 4444543 479999
Q ss_pred eccCCeEEEe-----cCCCHHHHHHHHHhcC
Q 031531 110 VLSDGTEVLM-----ACINRFRIEAWLSQMS 135 (158)
Q Consensus 110 ~~idGe~i~~-----grfd~d~L~~~L~~~~ 135 (158)
++|..++- .-.+..+|.++|+...
T Consensus 197 --V~GryIGgaeeV~~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 197 --VKGRYIGGAEEVVRLNEEGKLGKLLKGIP 225 (281)
T ss_pred --EccEEeccHHHhhhhhhcchHHHHHhcCC
Confidence 78875532 1122245666665544
No 273
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.66 E-value=6.1 Score=36.60 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=55.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC-CHHHHHhcCCccceEEEeccCCeEEEecCCCHH
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-NPEWEKSYQYEIPVLARVLSDGTEVLMACINRF 125 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~-d~el~ekyg~~VPVL~i~~idGe~i~~grfd~d 125 (158)
.-+..-|-.-.||-|....+.|.-... -+.+|.-.-||=-- .+|..++--..||.++ .||++...||-.-+
T Consensus 117 ~~~FETy~SltC~nCPDVVQALN~msv-----lNp~I~H~~IdGa~Fq~Evear~IMaVPtvf---lnGe~fg~GRmtle 188 (520)
T COG3634 117 DFHFETYFSLTCHNCPDVVQALNLMSV-----LNPRIKHTAIDGALFQDEVEARNIMAVPTVF---LNGEEFGQGRMTLE 188 (520)
T ss_pred ceeEEEEEEeeccCChHHHHHHHHHHh-----cCCCceeEEecchhhHhHHHhccceecceEE---EcchhhcccceeHH
Confidence 346778888899999999998877532 13355555555321 2233333334699999 89999999999999
Q ss_pred HHHHHHHh
Q 031531 126 RIEAWLSQ 133 (158)
Q Consensus 126 ~L~~~L~~ 133 (158)
+|.+.+..
T Consensus 189 eilaki~~ 196 (520)
T COG3634 189 EILAKIDT 196 (520)
T ss_pred HHHHHhcC
Confidence 98888754
No 274
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=76.60 E-value=1.3 Score=31.86 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=38.4
Q ss_pred EEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEE
Q 031531 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLA 108 (158)
Q Consensus 52 LYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~ 108 (158)
||-...=+--..+.+.++.+.. ..-..+++++.|||.++|++.+.++. -.|.|+
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~---~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCE---EYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHH---CHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred eEECCCChHHHHHHHHHHHHHH---hhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 3444444445667777777642 12345789999999999999999986 579887
No 275
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=76.59 E-value=8.7 Score=32.16 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=39.2
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcC--CccceEE
Q 031531 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ--YEIPVLA 108 (158)
Q Consensus 44 ~~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg--~~VPVL~ 108 (158)
....-++-+|.++.|+.|+.....|.. ...++.+--++=..|++....+- ..||+-.
T Consensus 106 ~~~~~rlalFvkd~C~~C~~~~~~l~a--------~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~ 164 (200)
T TIGR03759 106 LQGGGRLALFVKDDCVACDARVQRLLA--------DNAPLDLYLVGSQGDDERIRQWANRHQIDPAK 164 (200)
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHHhc--------CCCceeEEEecCCCCHHHHHHHHHHcCCCHHH
Confidence 345667999999999999998877733 33477777777556666555542 4566554
No 276
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=75.61 E-value=2.4 Score=31.34 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=26.3
Q ss_pred HHHhcCC-ccceEEEeccCCeEEEecCCCHHHHHHHHHh
Q 031531 96 WEKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 96 l~ekyg~-~VPVL~i~~idGe~i~~grfd~d~L~~~L~~ 133 (158)
+..++|. .+|.++ +||+.+ .+.++.++|.++|++
T Consensus 128 ~~~~~~i~~tPt~~---inG~~~-~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 128 LARQLGITGTPTFF---INGKYV-VGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHT-SSSSEEE---ETTCEE-ETTTSHHHHHHHHHH
T ss_pred HHHHcCCccccEEE---ECCEEe-CCCCCHHHHHHHHcC
Confidence 4455675 699999 899876 555999999999874
No 277
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=75.20 E-value=29 Score=27.90 Aligned_cols=81 Identities=7% Similarity=0.018 Sum_probs=45.9
Q ss_pred EeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC-------------------------CCHHHHHhcCC-----
Q 031531 53 YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------------------------TNPEWEKSYQY----- 102 (158)
Q Consensus 53 YTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId-------------------------~d~el~ekyg~----- 102 (158)
|-..||+.|..--..|.+... .....++++--|..| .+.++.+.||.
T Consensus 39 ~P~~~~p~C~~el~~l~~~~~---~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~ 115 (187)
T PRK10382 39 YPADFTFVCPTELGDVADHYE---ELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDE 115 (187)
T ss_pred ECCCCCCcCHHHHHHHHHHHH---HHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccC
Confidence 349999999986666655421 011123333333332 34455566664
Q ss_pred cc--ceEEEeccCCeEEEe------cCCCHHHHHHHHHhcCC
Q 031531 103 EI--PVLARVLSDGTEVLM------ACINRFRIEAWLSQMSL 136 (158)
Q Consensus 103 ~V--PVL~i~~idGe~i~~------grfd~d~L~~~L~~~~l 136 (158)
.+ |.+++...+|+.... ..-+.+++.+.|++++.
T Consensus 116 g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~ 157 (187)
T PRK10382 116 GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY 157 (187)
T ss_pred CceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhh
Confidence 34 777764456764321 22477899999987775
No 278
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=74.52 E-value=5.4 Score=31.56 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=51.7
Q ss_pred CCCCCCCceEEEEeCCCCCch--HHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh--cC--CccceEEEeccCC
Q 031531 41 SSSSSSTRKLVLYSKPGCCLC--DGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS--YQ--YEIPVLARVLSDG 114 (158)
Q Consensus 41 s~~~~~~~~VtLYTkpgC~lC--~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek--yg--~~VPVL~i~~idG 114 (158)
+..|..+..|.+=+...|+.+ ++..+.|++.. +++.-+.+-|..-.+... .| ..-|++. +||
T Consensus 69 ~~~p~Gk~~I~VC~~~~C~~~G~~~ll~~l~~~L---------gi~~gett~Dg~ftL~~~~ClG~C~~aP~~~---in~ 136 (156)
T PRK05988 69 RTHPPGRHVLKLCRAEACQAMGGDALAAHAKARL---------GIDFHQTTADGAVTLEPVYCLGLCACSPAAM---LDG 136 (156)
T ss_pred CCCCCCCEEEEEeCCchhhcCCHHHHHHHHHHHh---------CCCCCCcCCCCeEEEEeeeecCccCCCCeEE---ECC
Confidence 446677778889999999988 55556665542 333322222111111111 23 4689999 788
Q ss_pred eEEEecCCCHHHHHHHHHhcC
Q 031531 115 TEVLMACINRFRIEAWLSQMS 135 (158)
Q Consensus 115 e~i~~grfd~d~L~~~L~~~~ 135 (158)
+ .+++.+++++.+.|.+..
T Consensus 137 ~--~~~~lt~~~~~~il~~~~ 155 (156)
T PRK05988 137 E--VHGRLDPQRLDALLAEAR 155 (156)
T ss_pred E--EeCCCCHHHHHHHHHHhh
Confidence 7 577899999999998753
No 279
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=74.16 E-value=5 Score=30.96 Aligned_cols=42 Identities=2% Similarity=-0.032 Sum_probs=25.7
Q ss_pred ceEEEEe-CCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC
Q 031531 48 RKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (158)
Q Consensus 48 ~~VtLYT-kpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~ 92 (158)
.-|..|. ..||+.|......|.++.. .....++.+.-|.++.
T Consensus 31 ~vvl~F~~~~~c~~C~~~l~~l~~~~~---~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 31 WVVLFFYPLDFTFVCPTEIIAFSDRYE---EFKKLNAEVLGVSTDS 73 (173)
T ss_pred EEEEEEECCCCCCcCHHHHHHHHHHHH---HHHHCCCEEEEEecCC
Confidence 3444554 7999999998887766521 1123456666665543
No 280
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=73.96 E-value=15 Score=27.86 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=49.0
Q ss_pred HHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC---ccceEEEeccCC-eEE-EecCCCHHHHHHHHHhcCCC
Q 031531 63 GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSDG-TEV-LMACINRFRIEAWLSQMSLD 137 (158)
Q Consensus 63 ~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~---~VPVL~i~~idG-e~i-~~grfd~d~L~~~L~~~~l~ 137 (158)
..++.|++.. +.....++.|..+|.++.+.+.+.+|. ..|.+.+...++ +.. ..+.|+.+.|.+++++.--+
T Consensus 41 ~~~~~l~~vA---k~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 41 KYLEILKSVA---EKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred HHHHHHHHHH---HHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcC
Confidence 4455555542 122334589999999998888888884 489888643333 322 34778999999999876544
Q ss_pred c
Q 031531 138 C 138 (158)
Q Consensus 138 ~ 138 (158)
.
T Consensus 118 k 118 (130)
T cd02983 118 R 118 (130)
T ss_pred C
Confidence 3
No 281
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=73.87 E-value=4.3 Score=32.74 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=56.1
Q ss_pred CCCCCCCceEEEEeCCCCCchH--HHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhc--C--CccceEEEeccCC
Q 031531 41 SSSSSSTRKLVLYSKPGCCLCD--GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY--Q--YEIPVLARVLSDG 114 (158)
Q Consensus 41 s~~~~~~~~VtLYTkpgC~lC~--~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~eky--g--~~VPVL~i~~idG 114 (158)
...|....+|.+=+..-|++.- +..+.|++.. ++.+-+.+=|.--.+..-. | ..-|++. +||
T Consensus 71 ~~~P~Gr~~i~VC~~t~C~l~Gs~~l~~~l~~~l---------gi~~gett~DG~ftl~~v~ClGaC~~AP~vm---ind 138 (160)
T COG1905 71 FLKPVGRHHIRVCTGTACHLKGSEALLKALEKKL---------GIKPGETTADGKFTLEPVECLGACGQAPVVM---IND 138 (160)
T ss_pred ccCcCCCeEEEEeCCcHHhhcChHHHHHHHHHHh---------CCCCCCcCCCCeEEEeeeeeecccccCCEEE---ECC
Confidence 5667778889999999999973 4444454442 5555554444333333333 2 3589999 799
Q ss_pred eEEEecCCCHHHHHHHHHhcCCC
Q 031531 115 TEVLMACINRFRIEAWLSQMSLD 137 (158)
Q Consensus 115 e~i~~grfd~d~L~~~L~~~~l~ 137 (158)
+ .+++.++++|.+.|++...+
T Consensus 139 ~--~~~~lt~e~l~eil~~~~~~ 159 (160)
T COG1905 139 D--VYGRLTPEKLEEILEKLKAK 159 (160)
T ss_pred c--hhccCCHHHHHHHHHHHhcC
Confidence 7 56779999999999887543
No 282
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=73.87 E-value=11 Score=29.18 Aligned_cols=58 Identities=12% Similarity=0.065 Sum_probs=34.2
Q ss_pred CCceEEEEeCCC-CCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH---HHHHhcCCc-cceEE
Q 031531 46 STRKLVLYSKPG-CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQYE-IPVLA 108 (158)
Q Consensus 46 ~~~~VtLYTkpg-C~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~---el~ekyg~~-VPVL~ 108 (158)
....|..|...| |+.|......|.+... +..++.+--|..|... ++.++++.. +|++.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~-----~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~ls 106 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAA-----ELDNTVVLCISADLPFAQKRFCGAEGLENVITLS 106 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHH-----HcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEee
Confidence 344566666666 9999998888877631 1136667777665422 244455543 44443
No 283
>PRK13599 putative peroxiredoxin; Provisional
Probab=72.37 E-value=22 Score=29.14 Aligned_cols=83 Identities=11% Similarity=-0.068 Sum_probs=47.1
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC---------------------------CHHHHHhcCC-
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---------------------------NPEWEKSYQY- 102 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~---------------------------d~el~ekyg~- 102 (158)
..|-+.||+.|..--..|.++.. .....++.+--+.++. +.++.+.||.
T Consensus 34 ~~~pa~~tpvCt~El~~l~~~~~---~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 34 FSHPADFTPVCTTEFVEFARKAN---DFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHH---HHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 46679999999986666655421 1112244444444443 2234445653
Q ss_pred -------ccceEEEeccCCeEEEec------CCCHHHHHHHHHhcCC
Q 031531 103 -------EIPVLARVLSDGTEVLMA------CINRFRIEAWLSQMSL 136 (158)
Q Consensus 103 -------~VPVL~i~~idGe~i~~g------rfd~d~L~~~L~~~~l 136 (158)
.+|.+++...+|+..... +-+.++|.++|+++++
T Consensus 111 ~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~ 157 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQT 157 (215)
T ss_pred ccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 368777654567643221 1356888888887655
No 284
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=72.19 E-value=6.9 Score=35.28 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=62.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccC-CCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEE---ecC
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLS-GPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL---MAC 121 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~-~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~---~gr 121 (158)
..-..=|+.+||++-..++...++..+.- +...+..+-|-.||.+++..+..+|.. .-|++.+. .||...- .|.
T Consensus 14 elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf-rnG~~~~rEYRg~ 92 (375)
T KOG0912|consen 14 ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF-RNGEMMKREYRGQ 92 (375)
T ss_pred eEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee-eccchhhhhhccc
Confidence 34456688999999999999997753210 112235678999999999999999986 47988854 6886432 243
Q ss_pred CCHHHHHHHHHhcCCCc
Q 031531 122 INRFRIEAWLSQMSLDC 138 (158)
Q Consensus 122 fd~d~L~~~L~~~~l~~ 138 (158)
=+-+.|.+++++.-.+.
T Consensus 93 RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 93 RSVEALIEFIEKQLSDP 109 (375)
T ss_pred hhHHHHHHHHHHHhccH
Confidence 34466666665544433
No 285
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=71.80 E-value=3.9 Score=29.59 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=25.7
Q ss_pred HHHHhcCC-ccceEEEeccCCeEEEecCCCHHHHHHHHH
Q 031531 95 EWEKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLS 132 (158)
Q Consensus 95 el~ekyg~-~VPVL~i~~idGe~i~~grfd~d~L~~~L~ 132 (158)
++..++|. ++|.++ +||+ .++|..+.+.|+++|+
T Consensus 120 ~~~~~~gi~gtPt~~---v~g~-~~~G~~~~~~l~~~i~ 154 (154)
T cd03023 120 QLARALGITGTPAFI---IGDT-VIPGAVPADTLKEAID 154 (154)
T ss_pred HHHHHcCCCcCCeEE---ECCE-EecCCCCHHHHHHHhC
Confidence 34455675 699999 7896 6688888899988763
No 286
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=71.57 E-value=12 Score=28.63 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=45.3
Q ss_pred CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC-HHHHHhcC---CccceEEEeccCCeE-----------EEecC
Q 031531 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-PEWEKSYQ---YEIPVLARVLSDGTE-----------VLMAC 121 (158)
Q Consensus 57 gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d-~el~ekyg---~~VPVL~i~~idGe~-----------i~~gr 121 (158)
.|+.|...+-+|...- .-...++++.||--.. .++.+..| ++.|||+. -+|.. .+..
T Consensus 23 ~Cp~c~~iEGlLa~~P-----~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL--~~~~~~~~~~~~~~~~rfi~- 94 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFP-----DLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVL--ADGAPSPDDAGSHGGRRFID- 94 (112)
T ss_pred ECCchHHHHhHHhhCh-----hhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEe--CCCCCCcccccccCCeEEeC-
Confidence 4999999999997752 1224678888888653 34556555 57999994 23321 1222
Q ss_pred CCHHHHHHHHHh
Q 031531 122 INRFRIEAWLSQ 133 (158)
Q Consensus 122 fd~d~L~~~L~~ 133 (158)
|+++|.++|.+
T Consensus 95 -d~~~I~~~La~ 105 (112)
T PF11287_consen 95 -DPRRILRYLAE 105 (112)
T ss_pred -CHHHHHHHHHH
Confidence 56889888864
No 287
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=70.78 E-value=18 Score=27.06 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=44.7
Q ss_pred CcceEEEEcCCCHHHHHhcCCccceEEEecc-CCeEEEe-cC-CCHHHHHHHHHhcCCCceeeeeecc
Q 031531 82 DVDLQVRDITTNPEWEKSYQYEIPVLARVLS-DGTEVLM-AC-INRFRIEAWLSQMSLDCVMAYQQLS 146 (158)
Q Consensus 82 ~I~~eeIDId~d~el~ekyg~~VPVL~i~~i-dGe~i~~-gr-fd~d~L~~~L~~~~l~~~~~~~~~~ 146 (158)
.+.|-.++ ++++.++++...|.|++-.. +++...+ |. ++.++|.+|+...+++.+..+-+-.
T Consensus 22 ~~~F~~~~---~~~~~~~~~~~~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n 86 (184)
T PF13848_consen 22 DYQFGVTF---NEELAKKYGIKEPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTPEN 86 (184)
T ss_dssp TSEEEEEE----HHHHHHCTCSSSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTH
T ss_pred CcEEEEEc---HHHHHHHhCCCCCcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccchhh
Confidence 35666555 78899999987799985432 2434444 43 7999999999999999988776533
No 288
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=69.49 E-value=5.8 Score=31.96 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=51.5
Q ss_pred CCCCCCCceEEEEeCCCCCch--HHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHh--cC--CccceEEEeccCC
Q 031531 41 SSSSSSTRKLVLYSKPGCCLC--DGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS--YQ--YEIPVLARVLSDG 114 (158)
Q Consensus 41 s~~~~~~~~VtLYTkpgC~lC--~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ek--yg--~~VPVL~i~~idG 114 (158)
+..|..+..|.+=+...|+.+ ++..+.|++.. +++.-+..-|..-.+... .| ..-|++. +||
T Consensus 82 ~~~P~Gk~~I~VC~g~aC~~~G~~~ll~~l~~~L---------gi~~gett~DG~ftL~~~~ClG~C~~AP~~~---Vn~ 149 (169)
T PRK07571 82 SLKPSGEHTCVVCTGTACYVKGSAAILEDLENEL---------GIKAGETTADGKLSLLTARCLGACGIAPAVV---FDG 149 (169)
T ss_pred CcCCCCCEEEEEcCChHHHHCCcHHHHHHHHHHh---------CCCCCCcCCCCeEEEEEecccCccCCCCeEE---ECC
Confidence 445666777888889999997 66666666652 444333222111112222 23 3589999 799
Q ss_pred eEEEecCCCHHHHHHHHHhc
Q 031531 115 TEVLMACINRFRIEAWLSQM 134 (158)
Q Consensus 115 e~i~~grfd~d~L~~~L~~~ 134 (158)
+ .+++.+++++.+.|++.
T Consensus 150 ~--~~~~lt~e~v~~il~~~ 167 (169)
T PRK07571 150 K--VAGKQTPESVLEKVQGW 167 (169)
T ss_pred E--EeCCCCHHHHHHHHHHH
Confidence 7 57889999999999864
No 289
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=65.20 E-value=22 Score=32.47 Aligned_cols=89 Identities=15% Similarity=0.061 Sum_probs=57.2
Q ss_pred CceEEEEeCCCCCchHHHHHH------HHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEEE-
Q 031531 47 TRKLVLYSKPGCCLCDGLKEK------LQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEVL- 118 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~------L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i~- 118 (158)
.+.+.+|..|.=..=...|++ |+-..++ .+..++-|-.||+.+|.++++++|. ..+-+.+ ..+|+.+.
T Consensus 52 d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQV---lE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyV-fkd~~~IEy 127 (383)
T PF01216_consen 52 DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQV---LEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYV-FKDGEVIEY 127 (383)
T ss_dssp SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHH---CGGCTEEEEEEETTTTHHHHHHHT--STTEEEE-EETTEEEEE
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHh---ccccCcceEEeccHHHHHHHHhcCccccCcEEE-EECCcEEEe
Confidence 355677777765544443333 2222111 3567999999999999999999996 5777764 36888664
Q ss_pred ecCCCHHHHHHHHHhcCCCce
Q 031531 119 MACINRFRIEAWLSQMSLDCV 139 (158)
Q Consensus 119 ~grfd~d~L~~~L~~~~l~~~ 139 (158)
.|-++++-|.+||...-=+-|
T Consensus 128 dG~~saDtLVeFl~dl~edPV 148 (383)
T PF01216_consen 128 DGERSADTLVEFLLDLLEDPV 148 (383)
T ss_dssp -S--SHHHHHHHHHHHHSSSE
T ss_pred cCccCHHHHHHHHHHhcccch
Confidence 577999999999976544444
No 290
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=65.18 E-value=6 Score=30.33 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhh
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAF 72 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~ 72 (158)
.+|.+|.-+.||+|-.+++.|+++.
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~ 25 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLK 25 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHH
Confidence 3689999999999999999999874
No 291
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=65.06 E-value=51 Score=28.25 Aligned_cols=82 Identities=10% Similarity=0.002 Sum_probs=43.6
Q ss_pred EEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC----------------------------CHHHHHhcCC-
Q 031531 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT----------------------------NPEWEKSYQY- 102 (158)
Q Consensus 52 LYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~----------------------------d~el~ekyg~- 102 (158)
+|-..||+.|..-...|.+... .....++++--|.+|. +.++.+.||.
T Consensus 105 FyPa~ftpvCt~El~~l~~~~~---ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~ 181 (261)
T PTZ00137 105 FYPLDFTFVCPSELLGFSERLK---EFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLL 181 (261)
T ss_pred EECCCCCCCCHHHHHHHHHHHH---HHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCC
Confidence 3358999999986555554310 0112244444444432 2334455663
Q ss_pred -----ccceEEEeccCCeEEEe------cCCCHHHHHHHHHhcCC
Q 031531 103 -----EIPVLARVLSDGTEVLM------ACINRFRIEAWLSQMSL 136 (158)
Q Consensus 103 -----~VPVL~i~~idGe~i~~------grfd~d~L~~~L~~~~l 136 (158)
.+|.+++...+|+.... ..-+.+++.+.|+..+.
T Consensus 182 ~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~ 226 (261)
T PTZ00137 182 RDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQF 226 (261)
T ss_pred CcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhch
Confidence 25777764345653321 11366888888876654
No 292
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=62.60 E-value=7.2 Score=29.72 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=22.1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhh
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAF 72 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~ 72 (158)
+|++|....||+|-.+...|.++.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~ 24 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLR 24 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999874
No 293
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.43 E-value=32 Score=30.90 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=61.2
Q ss_pred CCCCCCCceEEEEeC----CCCCchHHHHHHHHHhhccCCC--CCC--CCcceEEEEcCCCHHHHHhcCC-ccceEEEec
Q 031531 41 SSSSSSTRKLVLYSK----PGCCLCDGLKEKLQAAFLLSGP--DSL--HDVDLQVRDITTNPEWEKSYQY-EIPVLARVL 111 (158)
Q Consensus 41 s~~~~~~~~VtLYTk----pgC~lC~~aK~~L~~~~~~~~~--~~~--~~I~~eeIDId~d~el~ekyg~-~VPVL~i~~ 111 (158)
-+.|..---|++||. -+|.+|.++.+...-..+.--. ... .++=|-+||.++-|+.++.++. .+|-+....
T Consensus 55 ~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~ 134 (331)
T KOG2603|consen 55 RPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFS 134 (331)
T ss_pred cCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEeC
Confidence 366666667999995 3599999999776544211000 111 2566999999999999999996 699998531
Q ss_pred c-CC-----eE---EEecCCCHHHHHHHHHhc
Q 031531 112 S-DG-----TE---VLMACINRFRIEAWLSQM 134 (158)
Q Consensus 112 i-dG-----e~---i~~grfd~d~L~~~L~~~ 134 (158)
. .| +. -..| +..|++.++.++.
T Consensus 135 P~~~n~~~s~~~d~~~~g-~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 135 PAKGNKKRSDQMDQQDLG-FEAEQIAQFVADR 165 (331)
T ss_pred CCccccccCccchhhhcc-hhHHHHHHHHHHh
Confidence 1 01 11 1134 6678888888654
No 294
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=60.24 E-value=17 Score=29.10 Aligned_cols=86 Identities=8% Similarity=0.040 Sum_probs=46.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHH---HHhhccCCCCCCCCcceEEEEcCC--C--HHH------HHhcCC--c-cceEEE
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKL---QAAFLLSGPDSLHDVDLQVRDITT--N--PEW------EKSYQY--E-IPVLAR 109 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L---~~~~~~~~~~~~~~I~~eeIDId~--d--~el------~ekyg~--~-VPVL~i 109 (158)
..+.|+-|...+||.|....+.| +.... .-..++.++.+.+.- . +.. ....+. . .+-++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~----~~~~~v~~~~~~~~f~~~~~~~~~~a~~~a~~~~~~~k~~~~lf~ 112 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKK----KLPEGTKMTKYHVEFLGPLGKELTQAWAVAMALGVEDKVTPPLFE 112 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHH----hCCCCCeEEEecccccchhhHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45779999999999999988754 33310 112355666655532 1 111 111121 0 112221
Q ss_pred eccCCeEEEecCCCHHHHHHHHHhcCCCce
Q 031531 110 VLSDGTEVLMACINRFRIEAWLSQMSLDCV 139 (158)
Q Consensus 110 ~~idGe~i~~grfd~d~L~~~L~~~~l~~~ 139 (158)
...++ .+..+++.|.+++.+.|+|..
T Consensus 113 ~i~~~----~~~~~~~~L~~~a~~~Gld~~ 138 (207)
T PRK10954 113 GVQKT----QTIQSAADIRDVFIKAGVKGE 138 (207)
T ss_pred HHHcc----CCCCCHHHHHHHHHHcCCCHH
Confidence 10111 123678889888888888754
No 295
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=58.82 E-value=14 Score=31.06 Aligned_cols=71 Identities=15% Similarity=0.299 Sum_probs=41.0
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCC-HHHHHhc---C--CccceEEEeccCCeEEEec
Q 031531 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-PEWEKSY---Q--YEIPVLARVLSDGTEVLMA 120 (158)
Q Consensus 47 ~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d-~el~eky---g--~~VPVL~i~~idGe~i~~g 120 (158)
++.+.=|.+.+|..=.+..-.|+.. +.+|.-||+-+. .+.-.+| + ..||.++ +||..+...
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~i----------DYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~---i~g~tl~eS 71 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGI----------DYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLV---IDGLTLTES 71 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCC----------CcceeehhhhcchhhhhhHHhhcCchhhCCeEE---ECCEEeehH
Confidence 3444456699999877666666443 344444444333 2222233 3 3699999 799766433
Q ss_pred CCCHHHHHHHHHhc
Q 031531 121 CINRFRIEAWLSQM 134 (158)
Q Consensus 121 rfd~d~L~~~L~~~ 134 (158)
-.|.++|++.
T Consensus 72 ----~AII~YLeEt 81 (217)
T KOG0868|consen 72 ----LAIIEYLEET 81 (217)
T ss_pred ----HHHHHHHHhc
Confidence 5666666654
No 296
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=58.39 E-value=11 Score=29.05 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=25.1
Q ss_pred HhcCC-ccceEEEeccCCeEEEecCCCHHHHHHHHH
Q 031531 98 KSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLS 132 (158)
Q Consensus 98 ekyg~-~VPVL~i~~idGe~i~~grfd~d~L~~~L~ 132 (158)
.+.|. ++|.++ +||+....|..+.+.+.+.|+
T Consensus 169 ~~~gv~G~Pt~v---v~g~~~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 169 RQLGISGVPFFV---FNGKYAVSGAQPPEVFLQALR 201 (201)
T ss_pred HHCCCCcCCEEE---ECCeEeecCCCCHHHHHHHhC
Confidence 34564 799999 798877788888899988763
No 297
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=55.54 E-value=64 Score=27.65 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC---ccceEEEeccCCeEEEecC-----CCHHHHHHHHH
Q 031531 61 CDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSDGTEVLMAC-----INRFRIEAWLS 132 (158)
Q Consensus 61 C~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~---~VPVL~i~~idGe~i~~gr-----fd~d~L~~~L~ 132 (158)
|..|+.++++. .+.++ .+|-.+|. .-+.||. ++=+| .||+....|+ |+++++++||+
T Consensus 170 ~~aA~~l~~~~---------~~~pi-~vD~mdN~-~~~~YgA~PeRlyIi----~~gkv~Y~Gg~GP~~y~~~e~r~~L~ 234 (237)
T PF00837_consen 170 LRAAKLLKEEF---------PQCPI-VVDTMDNN-FNKAYGALPERLYII----QDGKVVYKGGPGPFGYSPEELREWLE 234 (237)
T ss_pred HHHHHHHHhhC---------CCCCE-EEEccCCH-HHHHhCCCcceEEEE----ECCEEEEeCCCCCCcCCHHHHHHHHH
Confidence 55566555443 24553 66766554 3355663 34333 3888766543 88899999998
Q ss_pred hc
Q 031531 133 QM 134 (158)
Q Consensus 133 ~~ 134 (158)
+.
T Consensus 235 ~~ 236 (237)
T PF00837_consen 235 KY 236 (237)
T ss_pred hc
Confidence 74
No 298
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.08 E-value=11 Score=31.90 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=25.5
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHhh
Q 031531 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAF 72 (158)
Q Consensus 44 ~~~~~~VtLYTkpgC~lC~~aK~~L~~~~ 72 (158)
.+.+++|.+|+-+-||+|=..|+-|++..
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig~~rL~ka~ 30 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIGKRRLEKAL 30 (225)
T ss_pred CCceEEEEEEeCCcCchhhcCHHHHHHHH
Confidence 45667899999999999999999999974
No 299
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=54.65 E-value=20 Score=31.48 Aligned_cols=66 Identities=17% Similarity=0.321 Sum_probs=43.6
Q ss_pred ceEEEEe---CCCC----CchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccceEEEeccCCeEEEec
Q 031531 48 RKLVLYS---KPGC----CLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLMA 120 (158)
Q Consensus 48 ~~VtLYT---kpgC----~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i~~idGe~i~~g 120 (158)
-.|.||. ...| |+|-+.+-+|+.. +|+||.+|-... .+.+ +-.+|-+. .||+++.-.
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~----------~IpYE~~~~~~~--~rSr-~G~lPFIE---LNGe~iaDS 107 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAY----------DIPYEIVDCSLK--RRSR-NGTLPFIE---LNGEHIADS 107 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHh----------CCCceeccccce--eecc-CCCcceEE---eCCeecccc
Confidence 3577887 3445 5899999999987 899999876432 1111 23599998 899977444
Q ss_pred CCCHHHHHH
Q 031531 121 CINRFRIEA 129 (158)
Q Consensus 121 rfd~d~L~~ 129 (158)
.+=.++|++
T Consensus 108 ~~I~~~L~~ 116 (281)
T KOG4244|consen 108 DLIEDRLRK 116 (281)
T ss_pred HHHHHHHHH
Confidence 233344443
No 300
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=51.23 E-value=44 Score=25.84 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=32.3
Q ss_pred EEcCCCHHHHHhcCC-ccceEEEeccCC------------eEEEecCCCHHHHHHHHHhcC
Q 031531 88 RDITTNPEWEKSYQY-EIPVLARVLSDG------------TEVLMACINRFRIEAWLSQMS 135 (158)
Q Consensus 88 IDId~d~el~ekyg~-~VPVL~i~~idG------------e~i~~grfd~d~L~~~L~~~~ 135 (158)
..+.=||.|+++|+. .||.++....++ -...+|..+-+.-.+.+.+.|
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g 115 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDG 115 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhC
Confidence 445569999999997 599999642221 124577777766666666554
No 301
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=49.95 E-value=29 Score=26.78 Aligned_cols=78 Identities=12% Similarity=0.201 Sum_probs=45.4
Q ss_pred CCCCCCCceEEEEeCCCCCch--HHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH--HHHh--cC--CccceEEEecc
Q 031531 41 SSSSSSTRKLVLYSKPGCCLC--DGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE--WEKS--YQ--YEIPVLARVLS 112 (158)
Q Consensus 41 s~~~~~~~~VtLYTkpgC~lC--~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e--l~ek--yg--~~VPVL~i~~i 112 (158)
+..|..+.+|.+=....|+.+ ++..+.|++.. ++..-+ .+.|-. +... .| ..-|++. +
T Consensus 62 ~~~p~gk~~I~VC~g~~C~~~Ga~~v~~~l~~~L---------~i~~g~--~t~dg~~~l~~~~ClG~C~~aP~v~---V 127 (148)
T TIGR01958 62 DTEPVGRYHLQVCTNVPCALRGSEALLKYLENKL---------GIKPGE--TTPDGRFTLVEVECLGACGNAPVMM---I 127 (148)
T ss_pred CcCCCCCEEEEEcCCchhhhcCHHHHHHHHHHHh---------CCCCCC--CCCCCeEEEEEcCccCccCCCCEEE---E
Confidence 345555666777777888765 44445554432 222111 122211 1111 22 4689999 7
Q ss_pred CCeEEEecCCCHHHHHHHHHhc
Q 031531 113 DGTEVLMACINRFRIEAWLSQM 134 (158)
Q Consensus 113 dGe~i~~grfd~d~L~~~L~~~ 134 (158)
||+ .+++.+++++.+.|++.
T Consensus 128 ~~~--~y~~vt~e~v~~il~~~ 147 (148)
T TIGR01958 128 NDD--YYEFLTPEKLDELLERY 147 (148)
T ss_pred CCE--EeCCCCHHHHHHHHHhc
Confidence 874 57889999999998764
No 302
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=49.15 E-value=11 Score=28.85 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHhh
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAF 72 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~ 72 (158)
|.+|.-+-||+|--+++.|+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~ 23 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALA 23 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHH
Confidence 56899999999999999999873
No 303
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=47.12 E-value=27 Score=31.00 Aligned_cols=68 Identities=21% Similarity=0.413 Sum_probs=50.9
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC-----CHHHHHhcC--CccceEEEeccCCeEEEecC
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----NPEWEKSYQ--YEIPVLARVLSDGTEVLMAC 121 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~-----d~el~ekyg--~~VPVL~i~~idGe~i~~gr 121 (158)
..++|--|.--.-.++.-++.+. +|.++..||+- .+-|+-+.+ -+|||+. +|+.+ ..
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK----------~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~----~g~~I-I~- 89 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEK----------GIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLI----HGDNI-IS- 89 (325)
T ss_pred cceeeecCcccccceeeeehhhc----------ccccceeeccCccccccCchheecCCCCCCceEe----cCCee-cc-
Confidence 47899988888888888888776 89999999982 223555554 4799997 78754 33
Q ss_pred CCHHHHHHHHHh
Q 031531 122 INRFRIEAWLSQ 133 (158)
Q Consensus 122 fd~d~L~~~L~~ 133 (158)
+..+|-+++++
T Consensus 90 -d~tqIIdYvEr 100 (325)
T KOG4420|consen 90 -DYTQIIDYVER 100 (325)
T ss_pred -cHHHHHHHHHH
Confidence 56788888766
No 304
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=45.66 E-value=1.2e+02 Score=22.76 Aligned_cols=76 Identities=11% Similarity=0.207 Sum_probs=47.0
Q ss_pred CceEEEEe-CCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH----HHHHhcCC--ccceEEEeccCCeEEE-
Q 031531 47 TRKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQY--EIPVLARVLSDGTEVL- 118 (158)
Q Consensus 47 ~~~VtLYT-kpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~----el~ekyg~--~VPVL~i~~idGe~i~- 118 (158)
...+.+|- .+.||-=.+|.+.+++... ....++++-.+|+-++. +..++||. .=|.++.. .||+.+.
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~----~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili-~~g~~v~~ 93 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWE----ESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI-KNGKVVWH 93 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHH----HHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE-ETTEEEEE
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhh----cCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE-ECCEEEEE
Confidence 34466776 6669999999999988742 12223999999998765 46778886 57888753 6888543
Q ss_pred --ecCCCHHHH
Q 031531 119 --MACINRFRI 127 (158)
Q Consensus 119 --~grfd~d~L 127 (158)
.+..+.++|
T Consensus 94 aSH~~It~~~l 104 (105)
T PF11009_consen 94 ASHWDITAEAL 104 (105)
T ss_dssp EEGGG-SHHHH
T ss_pred CccccCCHHhc
Confidence 244666665
No 305
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=45.35 E-value=62 Score=25.99 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=30.8
Q ss_pred CCCCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC
Q 031531 43 SSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (158)
Q Consensus 43 ~~~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~ 92 (158)
++.....+..|.-..||+|.+.-..|++.. .......+.+.+..+..
T Consensus 81 ~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~---i~~~~~~~~~~~~~f~~ 127 (244)
T COG1651 81 NPYAPVTVVEFFDYTCPYCKEAFPELKKKY---IDDGKVRLVLREFPFLD 127 (244)
T ss_pred CCCCCceEEEEecCcCccHHHHHHHHHHHh---hhcCCCceEEEEeecCC
Confidence 333477899999999999977777777642 11222345666666654
No 306
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=45.05 E-value=48 Score=25.60 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=19.4
Q ss_pred ceEEEEe-CCCCCchHHHHHHHHHh
Q 031531 48 RKLVLYS-KPGCCLCDGLKEKLQAA 71 (158)
Q Consensus 48 ~~VtLYT-kpgC~lC~~aK~~L~~~ 71 (158)
-+|+||| .+-|+-|..+-+.+.+.
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~~ 121 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKKD 121 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHHH
Confidence 6799999 88899999876666553
No 307
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=45.04 E-value=29 Score=27.59 Aligned_cols=40 Identities=15% Similarity=-0.149 Sum_probs=28.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId 91 (158)
++|.+|+-.-||+|=-+++.|++... .....+.|.-+.+.
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~----~~~v~i~~~P~~L~ 40 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQT----AWNVDITYVPVFLG 40 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHH----HhCCeEEEEeeehh
Confidence 46889999999999999999988631 11234455566553
No 308
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=44.81 E-value=26 Score=32.19 Aligned_cols=85 Identities=8% Similarity=0.083 Sum_probs=51.3
Q ss_pred CCCCCC-ceEEEEeCCCCCch--HHHHHHHHHhhccC--CCCCCCCcceEEEEcCCCHHHHHhcCCccceEEEeccCCeE
Q 031531 42 SSSSST-RKLVLYSKPGCCLC--DGLKEKLQAAFLLS--GPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTE 116 (158)
Q Consensus 42 ~~~~~~-~~VtLYTkpgC~lC--~~aK~~L~~~~~~~--~~~~~~~I~~eeIDId~d~el~ekyg~~VPVL~i~~idGe~ 116 (158)
..|... .+|.+=+..-|++| +++.+.|++...+. ++..+-.|.++++..- -....-|++. +|++
T Consensus 84 ~~P~Gk~~~I~VC~~t~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veCL-------GaC~~APv~~---Ind~- 152 (400)
T PRK12373 84 LQPVGTRAHIQVCGTTPCMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVECL-------GACVNAPMVQ---IGKD- 152 (400)
T ss_pred ccCCCCceEEEEcCChHHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeec-------CccCCCCeEE---ECCE-
Confidence 345554 57888889999997 45555555542100 0011112333333321 0124689999 7887
Q ss_pred EEecCCCHHHHHHHHHhcCCCc
Q 031531 117 VLMACINRFRIEAWLSQMSLDC 138 (158)
Q Consensus 117 i~~grfd~d~L~~~L~~~~l~~ 138 (158)
.+++++++++.+.|.+..-+.
T Consensus 153 -~y~~LTpe~v~~IL~~l~ag~ 173 (400)
T PRK12373 153 -YYEDLTPERLEEIIDAFAAGK 173 (400)
T ss_pred -EeCCCCHHHHHHHHHHHhCCC
Confidence 688899999999998776533
No 309
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=44.16 E-value=68 Score=23.56 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=35.9
Q ss_pred CcceEEEEcCCCHHHHHhcCC---c--cceEEEeccCC-eEEEecCC-CHHHHHHHHHh
Q 031531 82 DVDLQVRDITTNPEWEKSYQY---E--IPVLARVLSDG-TEVLMACI-NRFRIEAWLSQ 133 (158)
Q Consensus 82 ~I~~eeIDId~d~el~ekyg~---~--VPVL~i~~idG-e~i~~grf-d~d~L~~~L~~ 133 (158)
.+.|..+|.++.....+.+|. . .|++.+...++ +...-+.+ +.+.|++++++
T Consensus 51 ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 51 KLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred eEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHH
Confidence 588999999876666677774 4 99999643334 21123446 88999999875
No 310
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=43.59 E-value=1.3e+02 Score=23.51 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=36.7
Q ss_pred CCCcceEEEEcC-----CCHHHHHhcCC---ccceEEEeccCCe-EEE---ecCCCHHHHHHHHHhc
Q 031531 80 LHDVDLQVRDIT-----TNPEWEKSYQY---EIPVLARVLSDGT-EVL---MACINRFRIEAWLSQM 134 (158)
Q Consensus 80 ~~~I~~eeIDId-----~d~el~ekyg~---~VPVL~i~~idGe-~i~---~grfd~d~L~~~L~~~ 134 (158)
..++=+-+|-|. +|.+|.++|+. ..|++..=..+.+ .+. .+.++.+.|++|+.+.
T Consensus 52 ~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 52 SDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp -SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 346778888887 48899999985 4899884321222 333 3558889999999987
No 311
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=42.57 E-value=37 Score=23.40 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=22.1
Q ss_pred CccceEEEeccCCeEEEecCCCHHHHHHHHHh
Q 031531 102 YEIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 102 ~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~ 133 (158)
..-|++. +||+ .+++.+++++.+.+++
T Consensus 53 ~~gP~~~---v~~~--~~~~~~~e~i~~il~~ 79 (80)
T cd03081 53 ACSPAAM---IDGE--VHGRVDPEKFDALLAE 79 (80)
T ss_pred CCCCEEE---ECCE--EECCCCHHHHHHHHHc
Confidence 4689999 7886 5666999999999875
No 312
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=42.33 E-value=33 Score=28.75 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=29.1
Q ss_pred CCHHHHHhcCC-ccceEEEeccCCeE-EEecCCCHHHHHHHHHh
Q 031531 92 TNPEWEKSYQY-EIPVLARVLSDGTE-VLMACINRFRIEAWLSQ 133 (158)
Q Consensus 92 ~d~el~ekyg~-~VPVL~i~~idGe~-i~~grfd~d~L~~~L~~ 133 (158)
+|.++.+++|. +.|.++....+|+. ..-|-.++++|.+.|+.
T Consensus 207 ~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 207 DNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence 34557777886 69999963223654 44565678999999875
No 313
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=41.86 E-value=30 Score=26.64 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhh
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAF 72 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~ 72 (158)
|.+|+-+-||+|--+...|+++.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~ 23 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKAL 23 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHH
Confidence 57899999999999999998864
No 314
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=41.44 E-value=51 Score=27.28 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=44.0
Q ss_pred CCcceEEEEcCCCH------HHHHhcCCc-cceEEEeccCCeEEEecCCCHHHHHHHHHhcCCCceeeeeec
Q 031531 81 HDVDLQVRDITTNP------EWEKSYQYE-IPVLARVLSDGTEVLMACINRFRIEAWLSQMSLDCVMAYQQL 145 (158)
Q Consensus 81 ~~I~~eeIDId~d~------el~ekyg~~-VPVL~i~~idGe~i~~grfd~d~L~~~L~~~~l~~~~~~~~~ 145 (158)
+++.++.++||..+ ++.++.+.. +=+++ .+| +..++||--++.+.-++-++++.++|.+-
T Consensus 40 ~gv~~~~i~vDG~D~T~~i~~~v~~~~~~~~rvVl---LdG--It~aGFNivDi~~l~~~tg~PVi~V~~k~ 106 (185)
T COG1628 40 DGVAFSLITVDGLDVTDAISDMVNRSKRRDLRVVL---LDG--ITFAGFNIVDIEALYKETGLPVIVVYRKK 106 (185)
T ss_pred EeeEEEEEEecCchHHHHHHHHHHHhhcccccEEE---ECC--eeeccceEecHHHHHHhhCCcEEEEEecC
Confidence 37788999998543 244455543 65666 688 45666999999999999999999888764
No 315
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=41.09 E-value=31 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHhcCC--Cceeee
Q 031531 121 CINRFRIEAWLSQMSL--DCVMAY 142 (158)
Q Consensus 121 rfd~d~L~~~L~~~~l--~~~~~~ 142 (158)
.++.+++.+||++.|- ||+|.|
T Consensus 29 ~~~~~~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 29 QLDWEDVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred CCCHHHHHHHHHHcCCCcceeeec
Confidence 3677999999999998 889887
No 316
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=40.33 E-value=44 Score=26.02 Aligned_cols=78 Identities=10% Similarity=0.175 Sum_probs=43.9
Q ss_pred CCCCCCCceEEEEeCCCCCch--HHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHH--HHHh--cC--CccceEEEecc
Q 031531 41 SSSSSSTRKLVLYSKPGCCLC--DGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE--WEKS--YQ--YEIPVLARVLS 112 (158)
Q Consensus 41 s~~~~~~~~VtLYTkpgC~lC--~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~e--l~ek--yg--~~VPVL~i~~i 112 (158)
+..|..+.+|.+=....|+.+ ++..+.|++.. +++.-+. +.|.. +... .| ..-|++. +
T Consensus 68 ~~~p~gk~~I~VC~g~~C~~~Ga~~l~~~l~~~L---------~i~~g~t--t~dg~~~l~~~~ClG~C~~gPvv~---V 133 (154)
T PRK07539 68 FRQPVGRHVIQVCTSTPCWLRGGEAILAALKKKL---------GIKPGET--TADGRFTLLEVECLGACDNAPVVM---I 133 (154)
T ss_pred CcCCCCCEEEEEcCCchHHHCCHHHHHHHHHHHh---------CCCCCCc--CCCCeEEEEEccccCccCCCCEEE---E
Confidence 345555666767777778766 34444444431 2211110 11111 1111 22 3579999 7
Q ss_pred CCeEEEecCCCHHHHHHHHHhc
Q 031531 113 DGTEVLMACINRFRIEAWLSQM 134 (158)
Q Consensus 113 dGe~i~~grfd~d~L~~~L~~~ 134 (158)
||+ .+++.+++++.+.|++.
T Consensus 134 ~~~--~y~~vt~e~v~~il~~~ 153 (154)
T PRK07539 134 NDD--TYEDLTPEKIDELLDEL 153 (154)
T ss_pred CCE--EeCCCCHHHHHHHHHhc
Confidence 885 57789999999999764
No 317
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=38.91 E-value=43 Score=22.91 Aligned_cols=27 Identities=7% Similarity=-0.038 Sum_probs=21.9
Q ss_pred CccceEEEeccCCeEEEecCCCHHHHHHHHHh
Q 031531 102 YEIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 102 ~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~ 133 (158)
..-|++. +||+ .+++.+++++.++++.
T Consensus 45 ~~gP~v~---V~~~--~~~~~t~~~i~~~~~~ 71 (72)
T cd03082 45 ERAPAAL---VGQR--PVDGATPAAVAAAVEA 71 (72)
T ss_pred CCCCeEE---ECCE--EeCCcCHHHHHHHHhc
Confidence 3689999 7887 4667999999998864
No 318
>PRK13191 putative peroxiredoxin; Provisional
Probab=38.54 E-value=44 Score=27.33 Aligned_cols=39 Identities=5% Similarity=-0.065 Sum_probs=25.6
Q ss_pred EEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC
Q 031531 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~ 92 (158)
..|-.+||+.|..-...|.+.. .+....++++--+.+|.
T Consensus 39 ff~pa~ftpvC~tEl~~l~~~~---~ef~~~g~~VigvS~Ds 77 (215)
T PRK13191 39 FSHPGDFTPVCTTEFYSFAKKY---EEFKKLNTELIGLSVDS 77 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHHHH---HHHHHCCCEEEEEECCC
Confidence 3678999999999877776652 11122356666666664
No 319
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=38.33 E-value=1.2e+02 Score=22.06 Aligned_cols=80 Identities=13% Similarity=0.007 Sum_probs=48.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhhccCCC-C-CCCCcceEEEEcCCCHHHHHhcCC---ccceEEEeccCC--eEE-Eec
Q 031531 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGP-D-SLHDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSDG--TEV-LMA 120 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~aK~~L~~~~~~~~~-~-~~~~I~~eeIDId~d~el~ekyg~---~VPVL~i~~idG--e~i-~~g 120 (158)
.+.+|+..+ =+..++.+.+... . . -...+.|..+|.++.....+.+|. +.|.+.+...++ +.. .-+
T Consensus 20 ~~l~f~~~~---~~~~~~~~~~vAk---~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~ 93 (111)
T cd03072 20 LILFHDKDD---LESLKEFKQAVAR---QLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFED 93 (111)
T ss_pred EEEEecchH---HHHHHHHHHHHHH---HHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCcc
Confidence 456663222 1556666666531 1 0 123589999999876667777885 489999643222 111 224
Q ss_pred CCCHHHHHHHHHhc
Q 031531 121 CINRFRIEAWLSQM 134 (158)
Q Consensus 121 rfd~d~L~~~L~~~ 134 (158)
.++++.|.+++++.
T Consensus 94 ~~t~~~i~~Fv~~~ 107 (111)
T cd03072 94 VYVPGKLKQFVLDL 107 (111)
T ss_pred ccCHHHHHHHHHHH
Confidence 57889999998764
No 320
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=38.24 E-value=1e+02 Score=27.09 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=27.2
Q ss_pred CCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCH
Q 031531 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (158)
Q Consensus 55 kpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~ 94 (158)
--||+-|.+++-+|+.+. ....++.|.-+||..+.
T Consensus 82 ELGsG~~~Kt~~LL~aL~-----~~~~~~~Y~plDIS~~~ 116 (319)
T TIGR03439 82 ELGSGNLRKVGILLEALE-----RQKKSVDYYALDVSRSE 116 (319)
T ss_pred EECCCchHHHHHHHHHHH-----hcCCCceEEEEECCHHH
Confidence 459999999999999983 12236789999998654
No 321
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=35.51 E-value=61 Score=27.86 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=21.6
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHh
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAA 71 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~ 71 (158)
.++.|.+-+-.|||+|....-.|-..
T Consensus 58 Gk~~v~~igw~gCP~~A~~sW~L~~A 83 (249)
T PF06053_consen 58 GKPEVIFIGWEGCPYCAAESWALYIA 83 (249)
T ss_pred CeeEEEEEecccCccchhhHHHHHHH
Confidence 46778888999999999988877664
No 322
>PF10926 DUF2800: Protein of unknown function (DUF2800); InterPro: IPR021229 This entry is represented by Bacteriophage APSE-1, protein 51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.
Probab=35.48 E-value=51 Score=29.81 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=29.9
Q ss_pred CCccceEEEeccCCeEEEecCCCHHHHHHHHHhcCCCceeeee
Q 031531 101 QYEIPVLARVLSDGTEVLMACINRFRIEAWLSQMSLDCVMAYQ 143 (158)
Q Consensus 101 g~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~~l~~~~~~~ 143 (158)
|..+|=... +.|+-.-.+ =|+++..+.|.+.|++-+..|.
T Consensus 286 G~~~pG~Kl--VeGRs~R~~-~De~~a~~~L~~~g~~~~~iy~ 325 (372)
T PF10926_consen 286 GEEVPGWKL--VEGRSNRKW-TDEDAAAEILKAAGYKEEEIYK 325 (372)
T ss_pred CCccCCeeE--EeccCcccc-CCHHHHHHHHHHCCCCHHHccc
Confidence 667888774 567633234 2899999999999998877776
No 323
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.36 E-value=21 Score=27.24 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=12.0
Q ss_pred CcceEEEEcCCCHH
Q 031531 82 DVDLQVRDITTNPE 95 (158)
Q Consensus 82 ~I~~eeIDId~d~e 95 (158)
.+.|+++||+.+++
T Consensus 32 ki~fk~~di~~~e~ 45 (108)
T KOG4023|consen 32 KIGFKEIDITAYEE 45 (108)
T ss_pred cCCcceeeccchhh
Confidence 79999999997665
No 324
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=33.21 E-value=40 Score=25.61 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=18.9
Q ss_pred hcC-CccceEEEeccCCeEEEecCCCHHHHHHHH
Q 031531 99 SYQ-YEIPVLARVLSDGTEVLMACINRFRIEAWL 131 (158)
Q Consensus 99 kyg-~~VPVL~i~~idGe~i~~grfd~d~L~~~L 131 (158)
+.| .++|.++ +||+ .++|.-.-+.+++.|
T Consensus 162 ~~gi~gvPtfv---v~g~-~~~G~~~l~~~~~~l 191 (192)
T cd03022 162 ARGVFGVPTFV---VDGE-MFWGQDRLDMLEEAL 191 (192)
T ss_pred HcCCCcCCeEE---ECCe-eecccccHHHHHHHh
Confidence 456 4799999 7897 446744445555554
No 325
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.10 E-value=43 Score=28.41 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=27.0
Q ss_pred hcCC-ccceEEEeccCCeEEEecCCCHHHHHHHHHhc
Q 031531 99 SYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLSQM 134 (158)
Q Consensus 99 kyg~-~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~ 134 (158)
++|. .||.++ .||+....|..+++.+..+|.+.
T Consensus 179 e~gI~gVP~fv---~d~~~~V~Gaq~~~v~~~al~~~ 212 (225)
T COG2761 179 EMGIRGVPTFV---FDGKYAVSGAQPYDVLEDALRQL 212 (225)
T ss_pred HCCCccCceEE---EcCcEeecCCCCHHHHHHHHHHH
Confidence 4565 599999 68888889999999888888764
No 326
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=32.12 E-value=56 Score=21.47 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=21.7
Q ss_pred CccceEEEeccCCeEEEecCCCHHHHHHHHHhc
Q 031531 102 YEIPVLARVLSDGTEVLMACINRFRIEAWLSQM 134 (158)
Q Consensus 102 ~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~ 134 (158)
..-|++. ++.+...+++.+++++.+.+++.
T Consensus 48 ~~~P~v~---i~~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 48 GLAPVVV---VYPDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred cCCCEEE---EeCCCeEEccCCHHHHHHHHHhC
Confidence 4579888 45222467889999999998763
No 327
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=31.87 E-value=26 Score=28.79 Aligned_cols=68 Identities=16% Similarity=0.061 Sum_probs=34.8
Q ss_pred CCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCCccc-eEEEeccCCeEEEecCCCHHHHHHHHHhcC
Q 031531 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIP-VLARVLSDGTEVLMACINRFRIEAWLSQMS 135 (158)
Q Consensus 57 gC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~~VP-VL~i~~idGe~i~~grfd~d~L~~~L~~~~ 135 (158)
+|+.|+....+=.. .+..+..+.+++=-+..+..+.... |.+ .+|+.... -+-..|.+.|.+.|
T Consensus 35 ~C~~Cdt~~t~~~~----------~~~~~~~~~~~~I~~~i~~~~~~~~~V~l---TGGEP~~~--~~l~~Ll~~l~~~g 99 (212)
T COG0602 35 RCPGCDTKYTWDFN----------YGKPGTPMSADEILADIKSLGYKARGVSL---TGGEPLLQ--PNLLELLELLKRLG 99 (212)
T ss_pred CCCCCCChhhhccc----------ccCCCCccCHHHHHHHHHhcCCCcceEEE---eCCcCCCc--ccHHHHHHHHHhCC
Confidence 48889976552111 1334444444332333344444444 333 67876322 24577777777766
Q ss_pred CCce
Q 031531 136 LDCV 139 (158)
Q Consensus 136 l~~~ 139 (158)
.+..
T Consensus 100 ~~~~ 103 (212)
T COG0602 100 FRIA 103 (212)
T ss_pred ceEE
Confidence 5443
No 328
>PRK00766 hypothetical protein; Provisional
Probab=30.97 E-value=79 Score=26.12 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=34.6
Q ss_pred CcceEEEEcCCCHH------HHH--hcCCccceEEEeccCCeEEEecCCCHHHHHHHHHhcCCCceeeee
Q 031531 82 DVDLQVRDITTNPE------WEK--SYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQMSLDCVMAYQ 143 (158)
Q Consensus 82 ~I~~eeIDId~d~e------l~e--kyg~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~~l~~~~~~~ 143 (158)
++-+..+.+|.++. +.. ++..++=+++ .|| +..++||--++.++-++.++++.+++.
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~---L~G--it~agFNvvD~~~l~~~tg~PVI~V~r 106 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIM---LDG--ITYGGFNVVDIEELYRETGLPVIVVMR 106 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEE---ECC--EeeeeeEEecHHHHHHHHCCCEEEEEe
Confidence 56677777775432 222 2223555555 677 345557777777777777777777654
No 329
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=30.95 E-value=50 Score=24.09 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=18.2
Q ss_pred ccceEEEeccCCeEEEecCCCHHHHHHHH
Q 031531 103 EIPVLARVLSDGTEVLMACINRFRIEAWL 131 (158)
Q Consensus 103 ~VPVL~i~~idGe~i~~grfd~d~L~~~L 131 (158)
.=|+++ . |..+..| |++++++++|
T Consensus 91 kRPii~---~-~~~~~vG-~~~e~~~~~l 114 (115)
T cd03032 91 RRPIII---D-EKRLQIG-YNEDEIRQFL 114 (115)
T ss_pred eCCEEE---e-CCEEEeC-CCHHHHHHhc
Confidence 459987 3 4456678 9999999876
No 330
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=30.88 E-value=1e+02 Score=23.62 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=30.1
Q ss_pred eEEEEeCCCCCchHHH-HHHHHHhhccCCCCCCCCc-ceEEEEcCCC---HHHHHhcCC--ccceEE
Q 031531 49 KLVLYSKPGCCLCDGL-KEKLQAAFLLSGPDSLHDV-DLQVRDITTN---PEWEKSYQY--EIPVLA 108 (158)
Q Consensus 49 ~VtLYTkpgC~lC~~a-K~~L~~~~~~~~~~~~~~I-~~eeIDId~d---~el~ekyg~--~VPVL~ 108 (158)
-+.+|-+.+|+.|..- ..-+.+... .....|. .+--+-.+.. .++.++++. .+|.|-
T Consensus 33 vl~fyP~~~tp~Ct~e~~~~~~~~~~---~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLs 96 (155)
T cd03013 33 VIFGVPGAFTPTCSAQHLPGYVENAD---ELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLA 96 (155)
T ss_pred EEEEeCCCCCCCCchhHHHHHHHhHH---HHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEE
Confidence 3556668889999975 444433310 0112245 3555555432 235566665 466554
No 331
>PRK10853 putative reductase; Provisional
Probab=30.65 E-value=66 Score=24.03 Aligned_cols=27 Identities=15% Similarity=0.438 Sum_probs=20.1
Q ss_pred ccceEEEeccCCeEEEecCCCHHHHHHHHHh
Q 031531 103 EIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 103 ~VPVL~i~~idGe~i~~grfd~d~L~~~L~~ 133 (158)
.=|+++ .+|..+..| |++++.+++|.+
T Consensus 91 kRPIv~---~~~~~~~vG-f~~e~~~~~l~~ 117 (118)
T PRK10853 91 KRPLLC---APGKPMLLG-FSESSYQQFFHE 117 (118)
T ss_pred eccEEE---eCCCeEEEc-CCHHHHHHHHcc
Confidence 349988 445456678 999999998854
No 332
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=30.17 E-value=1.2e+02 Score=25.71 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=29.0
Q ss_pred cCCCHHHHHhcCC-ccceEEEeccCCeEEEecCCCHHHHHHHHHhcC
Q 031531 90 ITTNPEWEKSYQY-EIPVLARVLSDGTEVLMACINRFRIEAWLSQMS 135 (158)
Q Consensus 90 Id~d~el~ekyg~-~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~~ 135 (158)
+.=||.++++|+. .||.+++.-..+--..+|..+-.+-.+.+.+.|
T Consensus 148 v~IDP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~~ALe~iA~~G 194 (212)
T PRK13730 148 VQIDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQALEKVAATG 194 (212)
T ss_pred eeECHHHHHhcCCccccEEEEEcCCCCCEEEecccHHHHHHHHHhcC
Confidence 3348999999997 599999531111124567666655555555544
No 333
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=30.13 E-value=60 Score=24.50 Aligned_cols=27 Identities=22% Similarity=0.392 Sum_probs=20.5
Q ss_pred ccceEEEeccCCeEEEecCCCHHHHHHHHHhc
Q 031531 103 EIPVLARVLSDGTEVLMACINRFRIEAWLSQM 134 (158)
Q Consensus 103 ~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~ 134 (158)
.=|+++ +|+.+..| |++++++++|...
T Consensus 91 kRPIi~----~~~~~~vG-~~~e~~~~~l~~~ 117 (131)
T PRK01655 91 RRPIII----DEKRLQVG-YNEDEIRAFLPRK 117 (131)
T ss_pred eCCEEE----ECCEEEec-CCHHHHHHHhhHH
Confidence 459987 34457678 9999999999553
No 334
>PF01516 Orbi_VP6: Orbivirus helicase VP6; InterPro: IPR001399 Bluetongue virus VP6 protein binds ATP and exhibits an RNA-dependent ATPase function and a helicase activity that catalyses the unwinding of double-stranded RNA substrates []. VP6 from five United States prototype bluetongue virus (BTV) serotypes contain unusually high concentrations of glycine, few aromatic amino acids, but a high concentration of charged amino acids, a characteristic of hydrophilic proteins []. VP6 is an inner capsid protein that surrounds the genomic DS-RNA. Its hydrophilic nature coupled with a capability to bind ss- and ds-RNA, suggests that it interacts directly with the BTV genomic RNA.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=30.11 E-value=42 Score=30.07 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=31.3
Q ss_pred HHHHhcCCccceEEEeccCCeEEEecCCCHHHHHHHHHhcCCCceeeeeec
Q 031531 95 EWEKSYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQMSLDCVMAYQQL 145 (158)
Q Consensus 95 el~ekyg~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~~l~~~~~~~~~ 145 (158)
.+..+|+..|||-..+ .+++.++.. +.++.++|+.-+|.-+|-
T Consensus 136 ai~~ryg~~I~VY~~e-~~~~iI~le-------~slqKELGltrE~~AeQt 178 (322)
T PF01516_consen 136 AIRSRYGTDIPVYKDE-ANGRIIELE-------SSLQKELGLTREMGAEQT 178 (322)
T ss_pred HHHHhcCCcceeecCC-CCceEEEeh-------hhHHHhhCcChhhhHHHH
Confidence 3667899999998744 566666655 466778888888777663
No 335
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=29.48 E-value=2.9e+02 Score=22.40 Aligned_cols=51 Identities=8% Similarity=0.008 Sum_probs=33.5
Q ss_pred CcceEEEEcCCCHHHHHhcCC-ccceE-EEeccCCeEE--EecCCCHHHHHHHHH
Q 031531 82 DVDLQVRDITTNPEWEKSYQY-EIPVL-ARVLSDGTEV--LMACINRFRIEAWLS 132 (158)
Q Consensus 82 ~I~~eeIDId~d~el~ekyg~-~VPVL-~i~~idGe~i--~~grfd~d~L~~~L~ 132 (158)
+++|..+=+|++-.....||. .+|.. ++...+|+.. ..|..+++++++.+.
T Consensus 123 ~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 123 ENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred cCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 556655555566667778986 68776 5544577743 368788888877543
No 336
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=29.43 E-value=56 Score=25.75 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=23.3
Q ss_pred EEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcC
Q 031531 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (158)
Q Consensus 52 LYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId 91 (158)
+|+.|-|+.|=..++.|.++.. .-...++++.|=.-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~----~~~~~i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKE----EYGNKIEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHH----HS-TTEEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHH----HcCCcEEEEEEEcc
Confidence 7999999999999999999842 11234666666443
No 337
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=29.39 E-value=85 Score=21.21 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=21.4
Q ss_pred CccceEEEeccCCeEEEecCCCHHHHHHHHHh
Q 031531 102 YEIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 102 ~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~ 133 (158)
..=|++. ++|. .+++.+++++.+.+++
T Consensus 53 ~~gP~v~---v~g~--~y~~vt~~~i~~i~~~ 79 (80)
T cd03064 53 DLAPVMM---INDD--VYGRLTPEKVDAILEA 79 (80)
T ss_pred CCCCEEE---ECCE--EECCCCHHHHHHHHHh
Confidence 4679998 6774 5677999999999875
No 338
>PRK12559 transcriptional regulator Spx; Provisional
Probab=28.72 E-value=65 Score=24.47 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=19.8
Q ss_pred ccceEEEeccCCeEEEecCCCHHHHHHHHHh
Q 031531 103 EIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 103 ~VPVL~i~~idGe~i~~grfd~d~L~~~L~~ 133 (158)
.=|++. +|+.+..| |++++++++|..
T Consensus 91 kRPIi~----~~~~~~iG-f~~e~~~~~l~~ 116 (131)
T PRK12559 91 RRPIML----DEKRLQIG-FNDEEIRKFLPR 116 (131)
T ss_pred eCCEEE----eCCEEEEc-CCHHHHHHHhhH
Confidence 359887 34457788 999999999844
No 339
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=27.91 E-value=2.2e+02 Score=20.28 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=23.9
Q ss_pred CcceEEEEcCCCHHHHHhcCC-ccceEEEeccCCeEE
Q 031531 82 DVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEV 117 (158)
Q Consensus 82 ~I~~eeIDId~d~el~ekyg~-~VPVL~i~~idGe~i 117 (158)
+++|... .|.+.++.+.|+. .+|..++...+|+..
T Consensus 84 ~~~~p~~-~D~~~~~~~~~~v~~~P~~~vid~~G~v~ 119 (126)
T cd03012 84 GITYPVA-NDNDYATWRAYGNQYWPALYLIDPTGNVR 119 (126)
T ss_pred CCCCCEE-ECCchHHHHHhCCCcCCeEEEECCCCcEE
Confidence 6666543 3666778888985 689998744457644
No 340
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=26.83 E-value=70 Score=23.32 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=18.3
Q ss_pred ccceEEEeccCCeEEEecCCCHHHHHHHH
Q 031531 103 EIPVLARVLSDGTEVLMACINRFRIEAWL 131 (158)
Q Consensus 103 ~VPVL~i~~idGe~i~~grfd~d~L~~~L 131 (158)
.=|+++ .++..+..| |++++++++|
T Consensus 92 kRPIi~---~~~~~~~vG-~~~e~~~~~l 116 (117)
T TIGR01617 92 RRPLIV---DTKNRLLIG-FKSESIEEFK 116 (117)
T ss_pred ecCEEE---eCCceEEec-CCHHHHHHhc
Confidence 359998 344256678 9999998875
No 341
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=24.62 E-value=92 Score=24.69 Aligned_cols=37 Identities=5% Similarity=0.044 Sum_probs=22.7
Q ss_pred EeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC
Q 031531 53 YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (158)
Q Consensus 53 YTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~ 92 (158)
|-+.+|+.|.....-|.++. +.....++++--|.++.
T Consensus 44 ~p~~~~~~C~~e~~~l~~~~---~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 44 YPLDFTFVCPTEIIQFSDSV---KRFNELNCEVLACSMDS 80 (199)
T ss_pred EcCCCCCcCHHHHHHHHHHH---HHHHHcCCEEEEEeCCC
Confidence 33678999987666665542 11223467777777764
No 342
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=24.44 E-value=1.1e+02 Score=20.93 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=21.8
Q ss_pred CccceEEEeccCCeEEEecCCCHHHHHHHHHh
Q 031531 102 YEIPVLARVLSDGTEVLMACINRFRIEAWLSQ 133 (158)
Q Consensus 102 ~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~ 133 (158)
..-|++. +||. .+++.+++++.+.++.
T Consensus 53 ~~~P~v~---V~~~--~y~~v~~~~v~~iv~~ 79 (80)
T cd03083 53 DQGPALL---INNR--VFTRLTPGRIDQIAEL 79 (80)
T ss_pred CCCCeEE---ECCE--EECCCCHHHHHHHHhc
Confidence 4679998 6774 6788999999998865
No 343
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.89 E-value=3.6e+02 Score=23.03 Aligned_cols=80 Identities=13% Similarity=0.102 Sum_probs=44.8
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEE----------------EcCC-----------CHH---HH
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVR----------------DITT-----------NPE---WE 97 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeI----------------DId~-----------d~e---l~ 97 (158)
|+|-++.+++...+.+..+.+.+.. ...++++... ++.+ |=- ..
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L------~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~ 74 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFL------KVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIE 74 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH------HHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHH
Confidence 5789999999988886665555421 1123433321 1111 110 11
Q ss_pred HhcCCccceEEEeccCCeEEEecCCCHHHHHHHHHhcC
Q 031531 98 KSYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQMS 135 (158)
Q Consensus 98 ekyg~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~~ 135 (158)
..++.++|++-+ .-|..=|...++++++.++|++.-
T Consensus 75 ~~~~~~~pi~gI--n~G~lGFl~~~~~~~~~~~l~~i~ 110 (277)
T PRK03708 75 HKTKKDIPILGI--NMGTLGFLTEVEPEETFFALSRLL 110 (277)
T ss_pred HhcCCCCeEEEE--eCCCCCccccCCHHHHHHHHHHHH
Confidence 234567898874 235533444577888888886643
No 344
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.03 E-value=89 Score=25.08 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHhh
Q 031531 46 STRKLVLYSKPGCCLCDGLKEKLQAAF 72 (158)
Q Consensus 46 ~~~~VtLYTkpgC~lC~~aK~~L~~~~ 72 (158)
-..+...|+.+.|++|..+-+.++...
T Consensus 118 ~~~~~~~f~~~~~~~~~~a~~~~~~~~ 144 (244)
T COG1651 118 LVLREFPFLDPACPYCRRAAQAARCAA 144 (244)
T ss_pred eEEEEeecCCCCcHHHHHHHHHHHHhc
Confidence 345788999999999999988887764
No 345
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=23.01 E-value=2.4e+02 Score=25.67 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=28.2
Q ss_pred CceEEEEeCCCCC--chHHHHHHHHHhhccCCCCCCCCcceEEEEcC
Q 031531 47 TRKLVLYSKPGCC--LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (158)
Q Consensus 47 ~~~VtLYTkpgC~--lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId 91 (158)
.++|++...+|=+ .++.+.++|+... .+++|+++|+-
T Consensus 41 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~--------~~ie~~~~~~G 79 (372)
T PLN00118 41 PITATLFPGDGIGPEIAESVKQVFTAAG--------VPIEWEEHYVG 79 (372)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHhcC--------CCeEEEEEeCc
Confidence 3679999988744 6889999998651 36888888764
No 346
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=22.89 E-value=48 Score=27.20 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=36.4
Q ss_pred CcceEEEEcCCCHH---H---HH-hcCCccceEEEeccCCeEEEecCCCHHHHHHHHHhcCCCceeeeeecc
Q 031531 82 DVDLQVRDITTNPE---W---EK-SYQYEIPVLARVLSDGTEVLMACINRFRIEAWLSQMSLDCVMAYQQLS 146 (158)
Q Consensus 82 ~I~~eeIDId~d~e---l---~e-kyg~~VPVL~i~~idGe~i~~grfd~d~L~~~L~~~~l~~~~~~~~~~ 146 (158)
++-+..+-++.++. + .. ++..++=+++ .||- ..+.||--++.+.-++.++++..++..-+
T Consensus 36 Gv~~~~itvdG~DaT~~i~~m~~~~~r~~i~~v~---LdGi--t~agFNiiD~~~l~~~tg~PVI~V~~~~p 102 (187)
T PF01949_consen 36 GVAFGRITVDGMDATEAIIEMVKRLFRPDIRVVM---LDGI--TFAGFNIIDIERLYEETGLPVIVVMRKEP 102 (187)
T ss_dssp EEEEEEE-TT-S-HHHHHHHHHCCTTTTTEEEEE---ESSS--EETTTEE--HHHHHHHH---EEEEESS--
T ss_pred EEEEEEEEECCchHHHHHHHHHHhcccCcceEEE---ECCE--eEEeeEEecHHHHHHHHCCCEEEEEEeCC
Confidence 67888999986542 2 22 2334566666 7993 56669999999999999999999887654
No 347
>PLN02590 probable tyrosine decarboxylase
Probab=22.67 E-value=3.9e+02 Score=25.19 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=46.3
Q ss_pred ceEEEEeCCCCCchHH-HHHHHHHhhccCCCCCCCCc---ceEEEEcCC------CHH-HHHhcC-----CccceEEEec
Q 031531 48 RKLVLYSKPGCCLCDG-LKEKLQAAFLLSGPDSLHDV---DLQVRDITT------NPE-WEKSYQ-----YEIPVLARVL 111 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~-aK~~L~~~~~~~~~~~~~~I---~~eeIDId~------d~e-l~ekyg-----~~VPVL~i~~ 111 (158)
+++++|+.+.+|+|-+ +-.+| |+ .+..|.++. |++ |.++.. -.+|.+++.
T Consensus 228 ~~~vvy~S~~aH~Sv~KAa~il-------------Glg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~Vva- 293 (539)
T PLN02590 228 PQLVVYGSDQTHSSFRKACLIG-------------GIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICA- 293 (539)
T ss_pred CCEEEEecCCchHHHHHHHHHc-------------CCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEE-
Confidence 4689999999999963 33333 44 466777663 333 333331 247888754
Q ss_pred cCCeEEEecCCCH-HHHHHHHHhcCC
Q 031531 112 SDGTEVLMACINR-FRIEAWLSQMSL 136 (158)
Q Consensus 112 idGe~i~~grfd~-d~L~~~L~~~~l 136 (158)
.-|.- ..|.||+ ++|.+..++.++
T Consensus 294 TaGTT-~tGaiDpl~~Ia~i~~~~g~ 318 (539)
T PLN02590 294 TVGTT-SSAAVDPLVPLGNIAKKYGI 318 (539)
T ss_pred EeCCC-CCcccCCHHHHHHHHHHhCC
Confidence 33442 3566777 788888888776
No 348
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=22.48 E-value=4.4e+02 Score=22.99 Aligned_cols=79 Identities=23% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC---------CHHHHHhcC--Cc-cceEEEecc
Q 031531 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---------NPEWEKSYQ--YE-IPVLARVLS 112 (158)
Q Consensus 45 ~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~---------d~el~ekyg--~~-VPVL~i~~i 112 (158)
+...|+.+-..+.-..|.+..+.+++. |...-.|.-++ |=+...+.. .. +||+.
T Consensus 138 PVTVKiRlG~d~~~~~~~~ia~~~~~~----------g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~---- 203 (323)
T COG0042 138 PVTVKIRLGWDDDDILALEIARILEDA----------GADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIA---- 203 (323)
T ss_pred CeEEEEecccCcccccHHHHHHHHHhc----------CCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEe----
Confidence 344455555544446777788888775 67777777664 223333332 23 77775
Q ss_pred CCeEEEecCCCHHHHHHHHHhcCCCceeee
Q 031531 113 DGTEVLMACINRFRIEAWLSQMSLDCVMAY 142 (158)
Q Consensus 113 dGe~i~~grfd~d~L~~~L~~~~l~~~~~~ 142 (158)
||+ + ++.++.++.|+.-|.|-||+-
T Consensus 204 NGd-I----~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 204 NGD-I----KSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred CCC-c----CCHHHHHHHHHhhCCCEEEEc
Confidence 885 3 578999999999999999974
No 349
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=22.28 E-value=1.6e+02 Score=21.74 Aligned_cols=23 Identities=17% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEcCCCHHHHHhcCC-ccceEEEe
Q 031531 88 RDITTNPEWEKSYQY-EIPVLARV 110 (158)
Q Consensus 88 IDId~d~el~ekyg~-~VPVL~i~ 110 (158)
.+|.-||.++++|+. .||.++..
T Consensus 55 ~~v~IdP~~F~~y~I~~VPa~V~~ 78 (113)
T PF09673_consen 55 PGVQIDPRLFRQYNITAVPAFVVV 78 (113)
T ss_pred cceeEChhHHhhCCceEcCEEEEE
Confidence 566679999999997 59999964
No 350
>PRK13189 peroxiredoxin; Provisional
Probab=22.06 E-value=1.1e+02 Score=25.16 Aligned_cols=21 Identities=10% Similarity=-0.096 Sum_probs=15.5
Q ss_pred EEEeCCCCCchHHHHHHHHHh
Q 031531 51 VLYSKPGCCLCDGLKEKLQAA 71 (158)
Q Consensus 51 tLYTkpgC~lC~~aK~~L~~~ 71 (158)
..|-..||+.|..-...|.+.
T Consensus 41 ~f~pa~fcpvC~tEl~~l~~~ 61 (222)
T PRK13189 41 FSHPADFTPVCTTEFVAFQKR 61 (222)
T ss_pred EEeCCCCCCCCHHHHHHHHHH
Confidence 457799999999766555544
No 351
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=21.44 E-value=3.3e+02 Score=21.72 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=43.3
Q ss_pred CCCCCceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCc-ceEEEEcCCCHHHHHhcCCccce
Q 031531 43 SSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDV-DLQVRDITTNPEWEKSYQYEIPV 106 (158)
Q Consensus 43 ~~~~~~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I-~~eeIDId~d~el~ekyg~~VPV 106 (158)
++....-|.=|++.|=|.|-+.-++|.+... .-.++ ..-.+||++-+++.+-|+..-|+
T Consensus 20 ~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~-----~vsnfa~IylvdideV~~~~~~~~l~~p~ 79 (142)
T KOG3414|consen 20 STEERLVVIRFGRDWDPTCMKMDELLSSIAE-----DVSNFAVIYLVDIDEVPDFVKMYELYDPP 79 (142)
T ss_pred cccceEEEEEecCCCCchHhhHHHHHHHHHH-----HHhhceEEEEEecchhhhhhhhhcccCCc
Confidence 3444556778999999999999999988631 11233 57778999999998888865433
No 352
>PHA00729 NTP-binding motif containing protein
Probab=21.22 E-value=5e+02 Score=21.83 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.2
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHh
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAA 71 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~ 71 (158)
.+|.++++||++-=.-++.+.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999888888877765
No 353
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=20.88 E-value=3.5e+02 Score=19.92 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=36.0
Q ss_pred CcceEEEEcCCCHH--HHHhcCC-ccceEEEec-cCCeE----EEecCCCHHHHHHHHHhc
Q 031531 82 DVDLQVRDITTNPE--WEKSYQY-EIPVLARVL-SDGTE----VLMACINRFRIEAWLSQM 134 (158)
Q Consensus 82 ~I~~eeIDId~d~e--l~ekyg~-~VPVL~i~~-idGe~----i~~grfd~d~L~~~L~~~ 134 (158)
++-+-..|+++.+. +...++. ..|.+.+.. .+++. ...|-.++++|.+.|...
T Consensus 52 ~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 52 RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 57788889987654 5556764 689988520 14432 236778999999988754
No 354
>PRK15000 peroxidase; Provisional
Probab=20.83 E-value=1.1e+02 Score=24.51 Aligned_cols=40 Identities=8% Similarity=0.095 Sum_probs=23.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCC
Q 031531 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (158)
Q Consensus 50 VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~ 92 (158)
+.+|-+.+|+.|..-...|.+.. ......++++--+.+|.
T Consensus 39 L~F~p~~~t~vC~~El~~l~~~~---~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 39 LFFWPMDFTFVCPSELIAFDKRY---EEFQKRGVEVVGVSFDS 78 (200)
T ss_pred EEEECCCCCCCCHHHHHHHHHHH---HHHHHCCCEEEEEECCC
Confidence 33344568999999777776552 11122355655555553
No 355
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.66 E-value=91 Score=27.07 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=47.0
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHhhccCCCCCCCCcceEEEEcCCCHHHHHhcCC-------ccceEEEeccCCeE
Q 031531 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-------EIPVLARVLSDGTE 116 (158)
Q Consensus 48 ~~VtLYTkpgC~lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId~d~el~ekyg~-------~VPVL~i~~idGe~ 116 (158)
-.++=|-+.|-+-|...-.+..++ |..-...++.|-++||-.=++..++|+. +.|++.. ..+|++
T Consensus 146 ~WlIeFfa~ws~~Cv~~spvfaeL---S~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~il-Fq~gkE 217 (265)
T KOG0914|consen 146 YWLIEFFACWSPKCVRFSPVFAEL---SIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYIL-FQKGKE 217 (265)
T ss_pred EEEEEEEeecChhhcccccccHHH---HHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEE-Eccchh
Confidence 345666677889999999888886 3334556889999999987777788863 4888763 345543
No 356
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.53 E-value=98 Score=18.51 Aligned_cols=17 Identities=12% Similarity=0.403 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHhcCCCc
Q 031531 122 INRFRIEAWLSQMSLDC 138 (158)
Q Consensus 122 fd~d~L~~~L~~~~l~~ 138 (158)
-+.++|++||.+.|+..
T Consensus 4 Ws~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCHHHHHHHHHHcCCCC
Confidence 46799999999999854
No 357
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.28 E-value=1.4e+02 Score=25.20 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.5
Q ss_pred EEEecCC-CHHHHHHHHHhcCCCcee
Q 031531 116 EVLMACI-NRFRIEAWLSQMSLDCVM 140 (158)
Q Consensus 116 ~i~~grf-d~d~L~~~L~~~~l~~~~ 140 (158)
.+..|+| +.+++.++|++.+.+.++
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vI 71 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVI 71 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 3456779 999999999999999886
No 358
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=20.21 E-value=2.8e+02 Score=25.96 Aligned_cols=68 Identities=7% Similarity=-0.004 Sum_probs=44.8
Q ss_pred ecccccceeccccccCcC------CCCCCCCceEEEEeCCCCC-----chHHHHHHHHHhhccCCCCCCCCcceEEEEcC
Q 031531 23 SRRRSRWGFSPLAYSSSS------SSSSSSTRKLVLYSKPGCC-----LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (158)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~------s~~~~~~~~VtLYTkpgC~-----lC~~aK~~L~~~~~~~~~~~~~~I~~eeIDId 91 (158)
+|..-||.+|.=-.-+.| -.+-....+|++|..+.=+ +=...+++|++... ...+|.++.+|-.
T Consensus 19 ~~~~~R~DlT~~k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~-----~s~~i~~~~iDP~ 93 (552)
T TIGR03521 19 SEFFFRFDLTEDKRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAA-----YNPNIKFRFVNPL 93 (552)
T ss_pred hhheeeEecCCCCceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHH-----hCCCeEEEEeCCC
Confidence 355668888754433333 2334467789888877633 34668889988753 2346999999988
Q ss_pred CCHH
Q 031531 92 TNPE 95 (158)
Q Consensus 92 ~d~e 95 (158)
.+++
T Consensus 94 ~~~~ 97 (552)
T TIGR03521 94 EEED 97 (552)
T ss_pred Ccch
Confidence 7654
Done!