BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031532
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y5C|A Chain A, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
pdb|2Y5C|B Chain B, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
Length = 109
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 40 VADRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIA 99
+A +V++ +D GQ+ P+ G G +L G+ E ACS C V ++
Sbjct: 1 MASDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGV--DLEGACEASLACST-CHVYVS 57
Query: 100 QEWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPE 151
++ LD LPP E+ +L A +L +SRLGCQ+VLT +LEG +P+
Sbjct: 58 EDHLDLLPPPEEREDDMLDM---APLLQENSRLGCQIVLTPELEGAEFTLPK 106
>pdb|1OQQ|A Chain A, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1OQQ|B Chain B, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1XLN|A Chain A, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLN|B Chain B, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLO|A Chain A, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|1XLO|B Chain B, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|3LB8|C Chain C, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|D Chain D, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 106
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 53 DGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYE 112
DG +R + G +L++A ++G+ D A A C V + + + D++P +
Sbjct: 9 DGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGS--ASCATCHVYVNEAFTDKVPAANER 66
Query: 113 EEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEPRPW 155
E +L+ S L +SRL CQ+++T +L+G+VV VP+ R W
Sbjct: 67 EIGMLE--SVTAELKPNSRLSCQIIMTPELDGIVVDVPD-RQW 106
>pdb|1OQR|A Chain A, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|B Chain B, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|C Chain C, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1XLP|A Chain A, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|B Chain B, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|C Chain C, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLQ|A Chain A, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|B Chain B, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|C Chain C, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
Length = 106
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 53 DGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYE 112
DG +R + G +L++A ++G+ D A A C V + + + D++P +
Sbjct: 9 DGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGS--ASCATCHVYVNEAFTDKVPAANER 66
Query: 113 EEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEPRPW 155
E +L+ S L +SRL CQ+++T +L+G+VV VP+ R W
Sbjct: 67 EIGMLE--SVTAELKPNSRLCCQIIMTPELDGIVVDVPD-RQW 106
>pdb|1GPX|A Chain A, C85s Gapdx, Nmr, 20 Structures
Length = 106
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 53 DGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYE 112
DG +R + G +L++A ++G+ D A A C V + + + D++P +
Sbjct: 9 DGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGS--ASCATCHVYVNEAFTDKVPAANER 66
Query: 113 EEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEPRPW 155
E +L+ + L +SRL CQ+++T +L+G+VV VP+ R W
Sbjct: 67 EIGMLECVTAE--LKPNSRLSCQIIMTPELDGIVVDVPD-RQW 106
>pdb|1R7S|A Chain A, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|B Chain B, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|C Chain C, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
Length = 106
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 53 DGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYE 112
DG +R + G +L++A ++G+ D A A C V + + + D++P +
Sbjct: 9 DGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGS--ASCATCHVYVNEAFTDKVPAANER 66
Query: 113 EEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEPRPW 155
E +L+ + L +SRL CQ+++T +L+G+VV VP+ R W
Sbjct: 67 EIGMLEGVTAE--LKPNSRLCCQIIMTPELDGIVVDVPD-RQW 106
>pdb|1PUT|A Chain A, An Nmr-Derived Model For The Solution Structure Of
Oxidized Putidaredoxin, A 2fe, 2-S Ferredoxin From
Pseudomonas
Length = 106
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 53 DGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYE 112
DG +R + G +L++A ++G+ D A A C V + + + D++P +
Sbjct: 9 DGTRRQLDVADGVSLMQAAVSNGIYDIVGDCGGS--ASCATCHVYVNEAFTDKVPAANER 66
Query: 113 EEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEPRPW 155
E +L+ + L +SRL CQ+++T +L+G+VV VP+ R W
Sbjct: 67 EIGMLECVTAE--LKPNSRLCCQIIMTPELDGIVVDVPD-RQW 106
>pdb|1PDX|A Chain A, Putidaredoxin
pdb|1YJI|A Chain A, Rdc-Refined Solution Nmr Structure Of Reduced
Putidaredoxin
pdb|1YJJ|A Chain A, Rdc-Refined Solution Nmr Structure Of Oxidized
Putidaredoxin
Length = 106
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 53 DGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYE 112
DG +R + G +L++A ++G+ D A A C V + + + D++P +
Sbjct: 9 DGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGS--ASCATCHVYVNEAFTDKVPAANER 66
Query: 113 EEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEPRPW 155
E +L+ + L +SRL CQ+++T +L+G+VV VP+ R W
Sbjct: 67 EIGMLECVTAE--LKPNSRLCCQIIMTPELDGIVVDVPD-RQW 106
>pdb|1L6V|A Chain A, Structure Of Reduced Bovine Adrenodoxin
Length = 128
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 42 DRI-VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100
D+I VH I+ DG+ G G +LL + + L E ACS C + Q
Sbjct: 5 DKITVHF--INRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACST-CHLIFEQ 61
Query: 101 EWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152
++L + EE +L A L SRLGCQ+ LT ++ M V VP+
Sbjct: 62 HIFEKLEAITDEENDML---DLAYGLTDRSRLGCQICLTKAMDNMTVRVPDA 110
>pdb|1CJE|A Chain A, Adrenodoxin From Bovine
pdb|1CJE|B Chain B, Adrenodoxin From Bovine
pdb|1CJE|C Chain C, Adrenodoxin From Bovine
pdb|1CJE|D Chain D, Adrenodoxin From Bovine
Length = 127
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 42 DRI-VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100
D+I VH I+ DG+ G G +LL + + L E ACS C + Q
Sbjct: 4 DKITVHF--INRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACST-CHLIFEQ 60
Query: 101 EWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152
++L + EE +L A L SRLGCQ+ LT ++ M V VP+
Sbjct: 61 HIFEKLEAITDEENDML---DLAYGLTDRSRLGCQICLTKAMDNMTVRVPDA 109
>pdb|1L6U|A Chain A, Nmr Structure Of Oxidized Adrenodoxin
Length = 128
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 42 DRI-VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100
D+I VH I+ DG+ G G +LL + + L E ACS C + Q
Sbjct: 5 DKITVHF--INRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACST-CHLIFEQ 61
Query: 101 EWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152
++L + EE +L A L SRLGCQ+ LT ++ M V VP+
Sbjct: 62 HIFEKLEAITDEENDML---DLAYGLTDRSRLGCQICLTKAMDNMTVRVPDA 110
>pdb|1E6E|B Chain B, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|D Chain D, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 128
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 42 DRI-VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100
D+I VH I+ DG+ G G +LL + + L E ACS C + Q
Sbjct: 5 DKITVHF--INRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACST-CHLIFEQ 61
Query: 101 EWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152
++L + EE +L A L SRLGCQ+ LT ++ M V VP+
Sbjct: 62 HIFEKLEAITDEENDML---DLAYGLTDRSRLGCQICLTKAMDNMTVRVPDA 110
>pdb|3P1M|A Chain A, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|B Chain B, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|C Chain C, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|D Chain D, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|E Chain E, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|F Chain F, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|G Chain G, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|H Chain H, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
Length = 132
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 42 DRI-VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100
D+I VH I+ DG+ G G +LL + + L E ACS C +
Sbjct: 6 DKITVHF--INRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACST-CHLIFED 62
Query: 101 EWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152
++L + EE +L A L SRLGCQ+ LT ++ M V VPE
Sbjct: 63 HIYEKLDAITDEENDML---DLAYGLTDRSRLGCQICLTKSMDNMTVRVPET 111
>pdb|2BT6|A Chain A, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
pdb|2BT6|B Chain B, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
Length = 108
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 41 ADRI-VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIA 99
D+I VH I+ DG+ G G +LL + + L E ACS C +
Sbjct: 4 GDKITVHF--INRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACST-CHLIFE 60
Query: 100 QEWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVP 150
Q ++L + EE +L A L SRLGCQ+ LT ++ M V VP
Sbjct: 61 QHIFEKLEAITDEENDML---DLAYGLTDRSRLGCQICLTKAMDNMTVRVP 108
>pdb|3N9Z|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 123
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 42 DRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQE 101
D+I F I+ DG+ G G +LL + + L E ACS C +
Sbjct: 4 DKITVHF-INRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACST-CHLIFEDH 61
Query: 102 WLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152
++L + EE +L A L SRLGCQ+ LT ++ M V VPE
Sbjct: 62 IYEKLDAITDEENDML---DLAYGLTDRSRLGCQICLTKSMDNMTVRVPET 109
>pdb|3N9Y|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
Length = 114
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 42 DRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQE 101
D+I F I+ DG+ G G +LL + + L E ACS C +
Sbjct: 4 DKITVHF-INRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACST-CHLIFEDH 61
Query: 102 WLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152
++L + EE +L A L SRLGCQ+ LT ++ M V VPE
Sbjct: 62 IYEKLDAITDEENDML---DLAYGLTDRSRLGCQICLTKSMDNMTVRVPET 109
>pdb|1AYF|A Chain A, Bovine Adrenodoxin (oxidized)
pdb|1AYF|B Chain B, Bovine Adrenodoxin (oxidized)
Length = 105
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 42 DRI-VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100
D+I VH I+ DG+ G G +LL + + L E ACS C + Q
Sbjct: 2 DKITVHF--INRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACST-CHLIFEQ 58
Query: 101 EWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVP 150
++L + EE +L A L SRLGCQ+ LT ++ M V VP
Sbjct: 59 HIFEKLEAITDEENDML---DLAYGLTDRSRLGCQICLTKAMDNMTVRVP 105
>pdb|2WLB|A Chain A, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
pdb|2WLB|B Chain B, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
Length = 103
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLD 104
+ +F + P+G++ I G G ++L L ++ ID E ACS C V + E +
Sbjct: 4 IKVFFVTPEGREIMIEGNEGDSILD-LAHANNID-LEGACEGSVACST-CHVIVDPEHYE 60
Query: 105 RLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVP 150
L P +EE +L A L SRLGCQV+L DL+G+ V +P
Sbjct: 61 LLDPPEEDEEDML---DLAFGLEETSRLGCQVLLRKDLDGIRVRIP 103
>pdb|3LXF|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|C Chain C, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|D Chain D, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|E Chain E, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
Length = 104
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 53 DGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYE 112
DG + I G +L++AL ++G ID +C A C V +A + DRLP S +
Sbjct: 9 DGTRTEIQAEPGLSLMEALRDAG-IDELLALCGGCCSC-ATCHVLVAPAFADRLPALSGD 66
Query: 113 EEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAV 149
E +L + HSRL CQ+ + LEG+ V +
Sbjct: 67 ENDLLDSSDHR---TPHSRLSCQITINDKLEGLEVEI 100
>pdb|2JQR|B Chain B, Solution Model Of Crosslinked Complex Of Cytochrome C And
Adrenodoxin
Length = 105
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 42 DRI-VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100
D+I VH I+ DG+ G G +LL + + L E ACS C + Q
Sbjct: 2 DKITVHF--INRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACST-CHLIFEQ 58
Query: 101 EWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVP 150
++L + EE +L A L SRLGCQ+ LT ++ M V VP
Sbjct: 59 HIFEKLEAITDEENDML---DCAYGLTDRSRLGCQISLTKAMDNMTVRVP 105
>pdb|3HUI|A Chain A, Crystal Structure Of The Mutant A105r Of [2fe-2s]
Ferredoxin In The Class I Cyp199a2 System From
Rhodopseudomonas Palustris
Length = 126
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 50 IDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACS-AECEVNIAQEWLDRLPP 108
+D G+ R + G T+++A + + E AC+ A C V + + W +++
Sbjct: 27 VDHTGETRTVEVEEGATVMEAAIRNAI---PGVEAECGGACACATCHVYVDEAWREKVGG 83
Query: 109 RSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPE 151
S EE +L R +SRL CQ+ ++++L+G++V PE
Sbjct: 84 PSPMEEDMLDFGYDVR---PNSRLSCQIKVSNELDGLIVTTPE 123
>pdb|1B9R|A Chain A, Terpredoxin From Pseudomonas Sp
Length = 105
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 64 GQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRA 123
GQ+L++ T +G+ P A C + I W++ + + +E +L+ S
Sbjct: 20 GQSLMEVATQNGV--PGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQ--STG 75
Query: 124 RVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152
+ +RL CQV + ++G++V VP P
Sbjct: 76 EPMTAGTRLSCQVFIDPSMDGLIVRVPLP 104
>pdb|1E9M|A Chain A, Ferredoxin Vi From Rhodobacter Capsulatus
pdb|1UWM|A Chain A, Reduced Ferredoxin 6 From Rhodobacter Capsulatus
Length = 106
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 47 LFAIDPDGQKRPIIGLAGQTLLKALTNSGL--IDPASHRLEEIDACSAECEVNIAQEWLD 104
+ I+ +G + + G T+++A ++G+ ID ACS C + W+D
Sbjct: 3 IIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDA---DCGGACACST-CHAYVDPAWVD 58
Query: 105 RLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPE 151
+LP E ++ SRL CQ+ +T L+G+VV +PE
Sbjct: 59 KLPKALPTETDMIDFAYEPNPAT--SRLTCQIKVTSLLDGLVVHLPE 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,140,369
Number of Sequences: 62578
Number of extensions: 148600
Number of successful extensions: 346
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 25
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)