Query 031532
Match_columns 158
No_of_seqs 130 out of 1043
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 15:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3309 Ferredoxin [Energy pro 100.0 2.6E-30 5.7E-35 196.6 10.9 141 5-154 4-147 (159)
2 PTZ00490 Ferredoxin superfamil 100.0 2.2E-29 4.8E-34 191.6 12.9 134 12-153 6-139 (143)
3 PLN02593 adrenodoxin-like ferr 100.0 3.4E-28 7.5E-33 179.5 11.7 103 45-153 1-104 (117)
4 COG0633 Fdx Ferredoxin [Energy 99.9 1.8E-21 4E-26 140.4 10.2 100 44-152 1-101 (102)
5 TIGR02007 fdx_isc ferredoxin, 99.8 1.2E-20 2.6E-25 137.6 10.7 87 57-152 16-102 (110)
6 TIGR02008 fdx_plant ferredoxin 99.7 7.8E-18 1.7E-22 120.1 7.4 93 44-153 2-94 (97)
7 TIGR01941 nqrF NADH:ubiquinone 99.7 2.2E-17 4.7E-22 143.4 9.7 96 43-152 28-123 (405)
8 CHL00134 petF ferredoxin; Vali 99.7 5.3E-17 1.2E-21 116.4 8.0 93 44-153 3-96 (99)
9 PLN03136 Ferredoxin; Provision 99.7 6.6E-16 1.4E-20 118.3 9.5 93 43-153 53-145 (148)
10 PTZ00038 ferredoxin; Provision 99.7 5.8E-16 1.3E-20 122.9 9.3 93 43-153 94-186 (191)
11 PRK05464 Na(+)-translocating N 99.6 3.4E-15 7.4E-20 129.8 10.4 93 43-151 34-126 (409)
12 PRK10713 2Fe-2S ferredoxin Yfa 99.6 2.2E-14 4.8E-19 99.9 8.3 83 44-149 1-84 (84)
13 COG2871 NqrF Na+-transporting 99.5 9E-15 1.9E-19 122.7 6.3 92 45-152 37-128 (410)
14 PF00111 Fer2: 2Fe-2S iron-sul 99.5 1.7E-14 3.6E-19 97.9 6.4 74 52-139 3-78 (78)
15 cd00207 fer2 2Fe-2S iron-sulfu 99.5 2.6E-14 5.6E-19 97.6 7.0 80 48-142 2-81 (84)
16 PRK11872 antC anthranilate dio 99.5 6.2E-14 1.4E-18 119.2 8.2 92 45-151 3-94 (340)
17 PRK07609 CDP-6-deoxy-delta-3,4 99.5 7.3E-14 1.6E-18 118.0 7.5 91 45-153 3-93 (339)
18 PRK05713 hypothetical protein; 99.5 8.6E-14 1.9E-18 116.9 7.2 86 44-151 1-86 (312)
19 COG3894 Uncharacterized metal- 99.4 1.5E-13 3.3E-18 121.7 5.8 90 44-153 1-90 (614)
20 PRK10684 HCP oxidoreductase, N 99.3 1.6E-11 3.5E-16 103.8 8.4 84 42-142 246-329 (332)
21 TIGR02160 PA_CoA_Oxy5 phenylac 99.2 3.7E-11 7.9E-16 102.1 9.3 89 43-148 261-350 (352)
22 PF13510 Fer2_4: 2Fe-2S iron-s 98.6 6.3E-08 1.4E-12 67.1 5.4 51 42-99 1-59 (82)
23 PRK07569 bidirectional hydroge 98.4 7.9E-07 1.7E-11 72.4 7.4 48 44-99 3-55 (234)
24 PRK08166 NADH dehydrogenase su 98.3 2.5E-06 5.4E-11 80.7 8.1 76 44-151 1-81 (847)
25 PTZ00305 NADH:ubiquinone oxido 97.9 4E-05 8.7E-10 64.7 8.1 54 42-99 64-121 (297)
26 PRK08493 NADH dehydrogenase su 97.9 3.4E-05 7.3E-10 73.1 7.1 49 44-98 1-52 (819)
27 PRK06259 succinate dehydrogena 97.6 0.00021 4.5E-09 63.6 7.7 62 57-151 23-88 (486)
28 PRK09908 xanthine dehydrogenas 97.5 0.00027 5.9E-09 54.9 6.4 52 45-100 7-58 (159)
29 PLN00129 succinate dehydrogena 97.5 0.00043 9.2E-09 58.2 7.1 90 1-98 1-108 (276)
30 PRK07860 NADH dehydrogenase su 97.4 0.00046 1E-08 65.2 7.7 52 42-99 2-56 (797)
31 PRK11433 aldehyde oxidoreducta 97.4 0.00045 9.7E-09 56.2 6.2 52 45-101 50-102 (217)
32 PRK09130 NADH dehydrogenase su 97.3 0.00051 1.1E-08 64.0 7.0 51 44-100 1-54 (687)
33 PRK12814 putative NADPH-depend 97.3 0.00052 1.1E-08 63.4 7.0 47 44-99 3-55 (652)
34 COG1034 NuoG NADH dehydrogenas 97.3 0.00043 9.3E-09 64.6 6.1 52 44-101 1-55 (693)
35 PRK12577 succinate dehydrogena 97.2 0.0019 4E-08 55.3 8.0 42 56-99 20-65 (329)
36 PRK09129 NADH dehydrogenase su 97.1 0.0018 3.8E-08 60.9 7.5 47 44-99 1-53 (776)
37 TIGR03193 4hydroxCoAred 4-hydr 97.0 0.002 4.3E-08 49.6 6.2 45 53-100 7-52 (148)
38 PF13085 Fer2_3: 2Fe-2S iron-s 97.0 0.0024 5.3E-08 46.7 5.8 62 57-148 21-90 (110)
39 COG2080 CoxS Aerobic-type carb 96.9 0.003 6.5E-08 49.0 6.1 47 53-101 9-55 (156)
40 PRK08640 sdhB succinate dehydr 96.9 0.0023 4.9E-08 52.9 5.6 40 57-98 25-75 (249)
41 TIGR01973 NuoG NADH-quinone ox 96.8 0.0035 7.6E-08 57.3 6.8 42 53-99 4-50 (603)
42 PRK12385 fumarate reductase ir 96.7 0.0034 7.3E-08 51.7 5.5 41 57-99 27-71 (244)
43 PRK13552 frdB fumarate reducta 96.7 0.0037 8E-08 51.3 5.6 40 57-98 26-69 (239)
44 COG3383 Uncharacterized anaero 96.5 0.006 1.3E-07 57.6 6.0 53 41-99 2-57 (978)
45 TIGR03198 pucE xanthine dehydr 96.4 0.012 2.6E-07 45.4 6.6 45 53-100 9-54 (151)
46 COG0479 FrdB Succinate dehydro 96.0 0.012 2.6E-07 48.4 5.0 40 57-98 22-65 (234)
47 PRK07570 succinate dehydrogena 96.0 0.016 3.4E-07 48.1 5.4 40 57-98 22-70 (250)
48 PRK12576 succinate dehydrogena 95.9 0.025 5.4E-07 47.5 6.6 41 56-98 26-70 (279)
49 PRK05950 sdhB succinate dehydr 95.5 0.032 6.8E-07 45.3 5.3 42 56-99 19-65 (232)
50 PRK12386 fumarate reductase ir 95.2 0.062 1.3E-06 44.6 6.4 43 56-100 21-67 (251)
51 PRK09800 putative hypoxanthine 95.2 0.049 1.1E-06 52.9 6.6 51 47-100 3-53 (956)
52 TIGR02963 xanthine_xdhA xanthi 95.0 0.046 9.9E-07 49.0 5.4 44 53-99 6-51 (467)
53 TIGR00384 dhsB succinate dehyd 94.8 0.031 6.8E-07 45.0 3.4 41 57-99 17-61 (220)
54 TIGR03313 Se_sel_red_Mo probab 94.4 0.074 1.6E-06 51.6 5.4 46 53-100 4-49 (951)
55 PRK12575 succinate dehydrogena 94.1 0.081 1.7E-06 43.4 4.4 39 58-98 26-68 (235)
56 PLN00192 aldehyde oxidase 92.3 0.29 6.4E-06 49.2 6.1 44 53-99 11-56 (1344)
57 TIGR02969 mam_aldehyde_ox alde 91.8 0.24 5.3E-06 49.7 4.8 50 47-100 3-54 (1330)
58 TIGR03311 Se_dep_Molyb_1 selen 91.3 0.47 1E-05 45.6 6.0 43 53-100 6-49 (848)
59 TIGR01372 soxA sarcosine oxida 91.1 1.5 3.2E-05 42.7 9.3 50 47-101 13-71 (985)
60 KOG2282 NADH-ubiquinone oxidor 84.7 1.8 3.8E-05 39.9 4.9 40 57-100 40-85 (708)
61 cd01760 RBD Ubiquitin-like dom 77.4 5.3 0.00011 26.9 4.2 25 48-72 3-27 (72)
62 PF02196 RBD: Raf-like Ras-bin 74.7 6.2 0.00013 26.3 4.0 26 45-72 3-28 (71)
63 cd06219 DHOD_e_trans_like1 FAD 73.7 3.3 7.1E-05 33.4 2.9 32 66-99 194-229 (248)
64 PF10418 DHODB_Fe-S_bind: Iron 73.2 2.8 6.2E-05 25.1 1.8 18 82-101 4-21 (40)
65 smart00455 RBD Raf-like Ras-bi 72.0 9 0.0002 25.5 4.3 24 49-72 4-27 (70)
66 cd06220 DHOD_e_trans_like2 FAD 71.4 2.9 6.2E-05 33.3 2.0 32 65-99 180-216 (233)
67 PRK08345 cytochrome-c3 hydroge 70.9 2.6 5.6E-05 35.0 1.7 35 65-101 225-266 (289)
68 PRK00054 dihydroorotate dehydr 70.3 2.8 6.1E-05 33.8 1.8 34 66-101 195-232 (250)
69 PRK06222 ferredoxin-NADP(+) re 69.0 5.5 0.00012 32.9 3.2 32 66-99 195-230 (281)
70 KOG0430 Xanthine dehydrogenase 65.5 12 0.00026 37.5 5.2 46 53-100 8-54 (1257)
71 cd01791 Ubl5 UBL5 ubiquitin-li 65.0 15 0.00033 24.4 4.3 27 44-70 1-27 (73)
72 cd06218 DHOD_e_trans FAD/NAD b 62.9 7.5 0.00016 31.3 2.9 33 66-100 194-230 (246)
73 COG4630 XdhA Xanthine dehydrog 61.3 22 0.00049 31.8 5.6 52 44-99 6-59 (493)
74 PLN02906 xanthine dehydrogenas 58.5 12 0.00026 38.0 3.9 34 64-100 1-34 (1319)
75 PF11470 TUG-UBL1: GLUT4 regul 57.1 12 0.00027 24.7 2.6 25 50-74 2-26 (65)
76 cd01817 RGS12_RBD Ubiquitin do 56.6 16 0.00035 24.8 3.2 38 51-101 6-47 (73)
77 cd01816 Raf_RBD Ubiquitin doma 55.3 21 0.00046 24.4 3.6 23 52-74 7-29 (74)
78 cd06221 sulfite_reductase_like 54.7 7.5 0.00016 31.5 1.6 31 65-97 203-240 (253)
79 PRK08364 sulfur carrier protei 53.4 26 0.00056 22.9 3.8 33 43-76 3-35 (70)
80 PF02824 TGS: TGS domain; Int 48.6 27 0.00058 22.2 3.1 23 51-75 5-27 (60)
81 PF03658 Ub-RnfH: RnfH family 46.3 23 0.00049 24.7 2.7 32 45-76 3-35 (84)
82 PRK05802 hypothetical protein; 45.3 20 0.00043 30.5 2.7 32 66-99 268-305 (320)
83 TIGR02911 sulfite_red_B sulfit 44.8 13 0.00028 30.3 1.5 30 66-97 204-240 (261)
84 cd06192 DHOD_e_trans_like FAD/ 44.4 13 0.00028 29.6 1.5 32 66-99 192-229 (243)
85 PRK12778 putative bifunctional 44.3 21 0.00046 33.6 3.0 31 66-98 195-229 (752)
86 PRK06437 hypothetical protein; 44.1 48 0.001 21.6 3.9 24 53-76 9-32 (67)
87 PRK12775 putative trifunctiona 40.3 26 0.00056 34.5 3.0 32 66-99 195-230 (1006)
88 PRK05659 sulfur carrier protei 37.2 66 0.0014 20.3 3.7 22 53-76 6-27 (66)
89 cd01818 TIAM1_RBD Ubiquitin do 36.5 56 0.0012 22.5 3.3 26 51-76 6-35 (77)
90 PF10531 SLBB: SLBB domain; I 34.1 86 0.0019 19.5 3.8 20 57-76 12-31 (59)
91 PRK12779 putative bifunctional 34.0 36 0.00079 33.4 2.9 31 66-98 861-895 (944)
92 PRK01777 hypothetical protein; 33.3 1.1E+02 0.0024 21.5 4.7 21 57-77 19-39 (95)
93 cd01809 Scythe_N Ubiquitin-lik 30.9 99 0.0021 19.4 3.8 27 46-72 2-28 (72)
94 PRK07440 hypothetical protein; 29.8 1.2E+02 0.0027 19.8 4.1 28 44-76 4-31 (70)
95 PF01476 LysM: LysM domain; I 29.6 55 0.0012 18.6 2.2 17 60-76 2-18 (44)
96 cd01792 ISG15_repeat1 ISG15 ub 28.8 1E+02 0.0022 20.3 3.7 27 45-71 3-29 (80)
97 cd01806 Nedd8 Nebb8-like ubiq 28.8 1.2E+02 0.0025 19.3 3.9 26 46-71 2-27 (76)
98 PRK08221 anaerobic sulfite red 26.8 35 0.00077 27.8 1.3 30 66-97 206-242 (263)
99 cd01803 Ubiquitin Ubiquitin. U 26.4 1.4E+02 0.003 18.8 4.0 26 46-71 2-27 (76)
100 cd00118 LysM Lysin domain, fou 25.7 74 0.0016 16.9 2.2 19 58-76 2-20 (46)
101 cd01804 midnolin_N Ubiquitin-l 25.7 1.5E+02 0.0032 19.6 4.0 26 45-70 2-27 (78)
102 PRK14494 putative molybdopteri 25.1 47 0.001 27.1 1.7 27 65-94 134-160 (229)
103 cd01805 RAD23_N Ubiquitin-like 24.1 1.6E+02 0.0034 18.9 3.9 25 46-70 2-26 (77)
104 cd01787 GRB7_RA RA (RAS-associ 23.9 2E+02 0.0043 20.1 4.5 26 47-72 5-30 (85)
105 TIGR02899 spore_safA spore coa 23.7 53 0.0012 18.2 1.4 15 62-76 2-16 (44)
106 COG2104 ThiS Sulfur transfer p 23.6 1.8E+02 0.0039 19.2 4.1 20 57-76 10-29 (68)
107 cd01995 ExsB ExsB is a transcr 23.5 53 0.0011 24.5 1.6 33 62-95 124-158 (169)
108 PF09012 FeoC: FeoC like trans 23.1 35 0.00076 22.1 0.5 28 65-95 32-61 (69)
109 PRK06944 sulfur carrier protei 22.5 1.6E+02 0.0035 18.3 3.6 20 57-76 8-27 (65)
110 PRK06083 sulfur carrier protei 22.3 2E+02 0.0044 19.7 4.2 28 44-76 18-45 (84)
111 cd01763 Sumo Small ubiquitin-r 22.0 2.6E+02 0.0056 18.8 4.8 29 44-72 11-39 (87)
112 cd01807 GDX_N ubiquitin-like d 21.7 1.8E+02 0.004 18.6 3.8 26 46-71 2-27 (74)
113 PF03990 DUF348: Domain of unk 21.5 1.9E+02 0.004 17.0 3.5 28 47-76 2-29 (43)
114 PTZ00044 ubiquitin; Provisiona 21.5 1.9E+02 0.0042 18.4 3.9 25 46-70 2-26 (76)
115 KOG3049 Succinate dehydrogenas 21.1 2.9E+02 0.0064 23.0 5.5 58 41-100 45-114 (288)
No 1
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.97 E-value=2.6e-30 Score=196.60 Aligned_cols=141 Identities=40% Similarity=0.565 Sum_probs=112.9
Q ss_pred hHHHhhhccccCCCcccccccccccCccc--c-CCCCCCCCcceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCc
Q 031532 5 TLQKLSSQIHRLPSLSPLSKSLTHRSSAT--A-APSAKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPAS 81 (158)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~ 81 (158)
+++.|+++.+++...... ..|...+++. + ....++.+ ++|+|+++||.+..+++..|+|||+++.+++|.. .
T Consensus 4 ~~~~~~~~~~~~a~~~~~-~~f~~~~t~~~~~~~~~~~~e~--i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idl--e 78 (159)
T KOG3309|consen 4 ALQKLSSQISRLAPFTRN-HIFRTSSTSEFSPSKGPRKVED--IKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDL--E 78 (159)
T ss_pred ccchhhcchhhccccccc-eeeccCcccccccccCCCCCce--EEEEEECCCCCEEEeeeecchHHHHHHHHcCCCc--c
Confidence 355666666665543332 2333222111 1 23333333 9999999999999999999999999999999932 2
Q ss_pred CCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccccCCCCcEEeeceEEecCCCccEEEeCCCCC
Q 031532 82 HRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEPRP 154 (158)
Q Consensus 82 ~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~~~~~~sRLACQi~l~~dldG~vI~lp~~~~ 154 (158)
+.|+|..+|+ ||||+|.+.++++|+++.++|.+||+. +.+++++|||+||+.+++|||||+|+||+..+
T Consensus 79 GACEgslACS-TCHViv~~~~yekl~ep~DeE~DmLDl---A~gLt~tSRLGCQI~l~keldG~~v~vP~atr 147 (159)
T KOG3309|consen 79 GACEGSLACS-TCHVIVDEEYYEKLPEPEDEENDMLDL---AFGLTETSRLGCQIVLTKELDGMRVAVPEATR 147 (159)
T ss_pred cccccccccc-ceEEEEcHHHHhcCCCCcchHHHHHHh---hhccccccccceEEEeccccCCcEEECccccc
Confidence 5899999999 999999999999999999999999997 57899999999999999999999999999765
No 2
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.96 E-value=2.2e-29 Score=191.62 Aligned_cols=134 Identities=25% Similarity=0.291 Sum_probs=111.7
Q ss_pred ccccCCCcccccccccccCccccCCCCCCCCcceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCC
Q 031532 12 QIHRLPSLSPLSKSLTHRSSATAAPSAKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACS 91 (158)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CG 91 (158)
.|-+-.+||..+....|...+-+ -.+...-++|+|++.||.+++|++.+|+|||+++.+++.+ +..+.|||.++||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i-~i~~~CGG~g~Cg 81 (143)
T PTZ00490 6 RLLPGVLLPRCMAALGPLSTSRA---LYSTPGKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKL-DVEGTCNGCMQCA 81 (143)
T ss_pred ccccCCcccchhhcccceeeeee---eccCCCcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCC-CccccCCCCCEeC
Confidence 34454567777766655554433 4455668999999999999999999999999999996532 3335799999998
Q ss_pred CccEEEEcCCCccCCCCCCHHHHHhhhcccccccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 92 AECEVNIAQEWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 92 atC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
||||+|.+||+++++++++.|+++|+. ..++.++||||||+++.+||||++|+||+..
T Consensus 82 -tC~V~V~~g~~~~l~~~~~~E~~~L~~---~~~~~~gsRLaCQi~v~~~ldgl~V~vp~~~ 139 (143)
T PTZ00490 82 -TCHVYLSAASFKKLGGPSEEEEDVLAK---ALDVKETSRLACQVDLTPEMDGLEVELPSYV 139 (143)
T ss_pred -CCEEEECCCccccCCCCChHHHHHhhc---cccCCCCcEEeeeEEEecCCCCEEEEeCccc
Confidence 999999999999999999999999995 3478999999999999999999999999875
No 3
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.95 E-value=3.4e-28 Score=179.50 Aligned_cols=103 Identities=32% Similarity=0.517 Sum_probs=93.1
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEE-cCCCccCCCCCCHHHHHhhhccccc
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNI-AQEWLDRLPPRSYEEEYVLKRNSRA 123 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V-~~g~~~~l~~~t~~E~~~L~~~~~~ 123 (158)
++|+|++++|.+++|++..|+|||+++.++|+ ++.+.|||.|.|| ||||+| ..++.+.++|++++|+++|+. .
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi--~i~~~CgG~g~C~-tC~V~V~~~~~~~~l~~~~~~E~~~L~~---~ 74 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDI--ELEGACEGSLACS-TCHVIVMDEKVYNKLPEPTDEENDMLDL---A 74 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCC--CCCccCCCcceeC-CCEEEEecCccccCCCCCChHHHHHHhc---c
Confidence 57999999999999999999999999999999 3446899999998 999999 566688999999999999995 3
Q ss_pred ccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 124 RVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 124 ~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
.++.++||||||+.+.+|+||++|+||+..
T Consensus 75 ~~~~~~sRLaCQ~~v~~~~~~~~v~ip~~~ 104 (117)
T PLN02593 75 FGLTETSRLGCQVIAKPELDGMRLALPAAT 104 (117)
T ss_pred cCCCCCeEecceeEeecCCCCEEEEcCchh
Confidence 678899999999999999999999999875
No 4
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.86 E-value=1.8e-21 Score=140.38 Aligned_cols=100 Identities=30% Similarity=0.421 Sum_probs=83.5
Q ss_pred ceEEEEECCCCCEEE-EEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 44 IVHLFAIDPDGQKRP-IIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~-v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
|.++.|+..++.... +.+..|+|||+++.++|| +..|.|+|. .|| ||||+|.+| ++.+++++..|.++|+.
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi--~i~~~C~~g-~C~-TC~v~v~~G-~~~v~~~~~~e~~~l~~--- 72 (102)
T COG0633 1 MPKIAFVTIDGEGDVTEAVNEGETLLEAAERNGI--PIEYACRGG-ACG-TCRVKVLEG-FDEVSPPEESEEDLLDA--- 72 (102)
T ss_pred CCceEEEeccCCcceEEeccCCcHHHHHHHHCCC--cceecCCCC-ccC-ccEEEEecC-cccCCCcchHHHHHHHh---
Confidence 566777777775444 455559999999999999 344789875 998 999999999 78899999999999993
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeCCC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp~~ 152 (158)
....+++||+||+++.+|+++.++.+|+.
T Consensus 73 -~~~~~~~rL~Cq~~~~~d~~i~~~~~~~~ 101 (102)
T COG0633 73 -AGLEGNSRLSCQCRVKGDLDIEVVEEPEY 101 (102)
T ss_pred -hccCCCcEEeeeeEECCCcceEEEeccCC
Confidence 57788999999999999998888888764
No 5
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.85 E-value=1.2e-20 Score=137.63 Aligned_cols=87 Identities=30% Similarity=0.507 Sum_probs=74.8
Q ss_pred EEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccccCCCCcEEeece
Q 031532 57 RPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRARVLNLHSRLGCQV 136 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~~~~~~sRLACQi 136 (158)
++|++.+|+|||++++++|+ ++.+.|+|.|.|| ||+|+|.+| ...+++.+..|.++|+. ..++.++||||||+
T Consensus 16 ~~~~~~~g~tLL~a~~~~gi--~i~~~CgG~G~Cg-tC~v~V~~G-~~~~~~~~~~e~~~L~~---~~~~~~~~RLaCq~ 88 (110)
T TIGR02007 16 AVVEAKPGETILDVALDNGI--EIEHACEKSCACT-TCHCIVREG-FDSLEEASEQEEDMLDK---AWGLEPDSRLSCQA 88 (110)
T ss_pred eEEEECCCChHHHHHHHcCC--CccccCCCCceeC-CCEEEEeec-cccCCCCCHHHHHHHhh---ccCCCCCcEEeeeE
Confidence 78999999999999999999 4457899999998 999999998 46788889999999985 24678999999999
Q ss_pred EEecCCCccEEEeCCC
Q 031532 137 VLTHDLEGMVVAVPEP 152 (158)
Q Consensus 137 ~l~~dldG~vI~lp~~ 152 (158)
++.++ +++|++|..
T Consensus 89 ~~~~~--dl~v~~~~~ 102 (110)
T TIGR02007 89 VVADE--DLVVEIPKY 102 (110)
T ss_pred EEcCC--CEEEEECch
Confidence 99853 369999864
No 6
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.73 E-value=7.8e-18 Score=120.12 Aligned_cols=93 Identities=19% Similarity=0.318 Sum_probs=74.2
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccccc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRA 123 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~ 123 (158)
.++|+|..++|..+++.+.+|+|||++++++|| ...+.|+ +|.|| +|+|+|.+|..+. . +...|+ .
T Consensus 2 ~~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi--~i~~~C~-~G~Cg-~C~v~v~~G~~~~-~-----~~~~l~----~ 67 (97)
T TIGR02008 2 TYKVTLVNPDGGEETIECPDDQYILDAAEEAGI--DLPYSCR-AGACS-TCAGKVEEGTVDQ-S-----DQSFLD----D 67 (97)
T ss_pred eEEEEEEECCCCEEEEEECCCCcHHHHHHHcCC--CCCcCCC-CccCC-CCceEEEeCcEec-C-----ccCCCC----H
Confidence 356888667887789999999999999999999 3447897 89998 9999999996432 1 112355 3
Q ss_pred ccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 124 RVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 124 ~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
+++.+++||+||+++.+|+ +|++|...
T Consensus 68 ~~~~~g~~LaC~~~~~~di---~v~~~~~~ 94 (97)
T TIGR02008 68 DQMEAGYVLTCVAYPTSDC---TIETHKEE 94 (97)
T ss_pred HHHhCCeEEEeeCEECCCe---EEEecccc
Confidence 5677899999999999996 99998753
No 7
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.72 E-value=2.2e-17 Score=143.37 Aligned_cols=96 Identities=23% Similarity=0.287 Sum_probs=79.4
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
+|.+|+++..+|..+++++.+|+|||++++++|+ +..+.|+|.|.|| +|+|+|.+|+. +++..|...|+.
T Consensus 28 ~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi--~i~~~C~g~G~Cg-~C~v~v~~G~~----~~~~~~~~~L~~--- 97 (405)
T TIGR01941 28 SSGDITIGINDDEEKSITVPAGGKLLNTLASNGI--FISSACGGGGTCG-QCRVRVVEGGG----EILPTELSHFSK--- 97 (405)
T ss_pred ccccEEEEEcCCCceEEEECCCChHHHHHHHcCC--CCcccCCCccEeC-CCEEEEccCCc----CCChhhhhhcCH---
Confidence 4666777777777789999999999999999999 3446899889998 99999999863 234566677873
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeCCC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp~~ 152 (158)
.+..+++||+||+++.+|+ +|++|..
T Consensus 98 -~~~~~g~rLaCq~~~~~d~---~i~~~~~ 123 (405)
T TIGR01941 98 -REAKEGWRLSCQVKVKQDM---SIEIPEE 123 (405)
T ss_pred -hHhcCCcEEEeeCEECCCE---EEEECcc
Confidence 6788999999999999995 8998854
No 8
>CHL00134 petF ferredoxin; Validated
Probab=99.70 E-value=5.3e-17 Score=116.40 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=73.5
Q ss_pred ceEEEEECC-CCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 44 IVHLFAIDP-DGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 44 m~~Vt~v~~-~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
.++|++.++ +|..+.|++.+|+|||+++.++|| ...+.|+ .|.|| +|+|+|.+|..+. . +...|+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi--~i~~~C~-~G~Cg-~C~v~v~~G~v~~-~-----~~~~l~---- 68 (99)
T CHL00134 3 TYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGI--DLPYSCR-AGACS-TCAGKVTEGTVDQ-S-----DQSFLD---- 68 (99)
T ss_pred eEEEEEEecCCCCeEEEEECCCCcHHHHHHHcCC--CCCcCCC-CccCC-CCEEEEEeCcccc-C-----cccCCC----
Confidence 357777652 666678999999999999999999 4447897 89998 9999999996432 1 112355
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
.+++.+++||+||+++.+|+ +|++|...
T Consensus 69 ~~e~~~g~~L~C~~~~~~d~---~i~~~~~~ 96 (99)
T CHL00134 69 DDQLEAGFVLTCVAYPTSDC---TILTHQEE 96 (99)
T ss_pred HHHHhCCeEEEeeCEECCCe---EEEecccc
Confidence 35677899999999999996 99998764
No 9
>PLN03136 Ferredoxin; Provisional
Probab=99.65 E-value=6.6e-16 Score=118.32 Aligned_cols=93 Identities=17% Similarity=0.294 Sum_probs=74.8
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
..++|+|++++| .++|++.+|++|||+++++|| ...|.|+ .|.|| +|+++|.+|.++. .+...|+
T Consensus 53 ~~~~V~l~~~~~-~~~~~~~~g~tILdAa~~~Gi--~lp~sCr-~G~CG-tC~~~l~~G~V~~------~~~~~L~---- 117 (148)
T PLN03136 53 ATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGI--DLPYSCR-AGSCS-SCAGKVVSGSIDQ------SDQSFLD---- 117 (148)
T ss_pred eeEEEEEecCCC-cEEEEeCCCCcHHHHHHHcCC--CCCcCCC-CccCC-CCEEEEecCcCcc------CcccCCC----
Confidence 357888876655 468999999999999999999 3447897 89998 9999999996543 2223466
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
.+++++|+||+||.++.+|+ +|++|.+.
T Consensus 118 ~~e~~~G~~LaC~a~p~sD~---~Ie~~~e~ 145 (148)
T PLN03136 118 DEQISEGYVLTCVAYPTSDV---VIETHKEE 145 (148)
T ss_pred HHHhcCCEEEEeEeEECCCc---EEecCChh
Confidence 36778999999999999996 99998753
No 10
>PTZ00038 ferredoxin; Provisional
Probab=99.65 E-value=5.8e-16 Score=122.91 Aligned_cols=93 Identities=18% Similarity=0.272 Sum_probs=74.6
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
..++|+|..++|. +++++.+|+||||+++++|| ...+.|++ |.|| +|+|+|.+|.++. .|...|+
T Consensus 94 ~~~~Vt~~~~~g~-~~~~v~~geTILdAae~aGI--~lp~sCr~-G~CG-tCkvrV~~GeV~~------~e~~~Ls---- 158 (191)
T PTZ00038 94 LFYNITLQTPDGE-KVIECDEDEYILDAAERQGV--ELPYSCRG-GSCS-TCAAKLLEGEVDN------EDQSYLD---- 158 (191)
T ss_pred ceEEEEEEeCCCc-EEEEeCCCCcHHHHHHHcCC--CCCcCCCC-ccCC-CCEeEEeeccccc------CccccCC----
Confidence 3467888756664 78999999999999999999 44478985 9998 9999999996443 2334566
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
.+++++++||+||+++.+|+ +|++|.+.
T Consensus 159 ~ee~~~G~~LaCqa~p~sDi---~Ie~p~e~ 186 (191)
T PTZ00038 159 DEQLKKGYCLLCTCYPKSDC---TIETHKED 186 (191)
T ss_pred HHHhcCCEEEEeeCEECCCe---EEecCChH
Confidence 36778999999999999995 89998753
No 11
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.61 E-value=3.4e-15 Score=129.80 Aligned_cols=93 Identities=27% Similarity=0.324 Sum_probs=73.4
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
.+++|++. ++..+++++.+|+|||++++++|+ +..+.|+|+|.|| +|+|+|.+|+.+ ++..|...|+.
T Consensus 34 ~~~~i~~~--~~~~~~~~~~~g~tLL~a~~~~gi--~i~~~C~g~G~Cg-tC~v~v~~G~~~----~~~~e~~~l~~--- 101 (409)
T PRK05464 34 GDVTIKIN--GDPEKTITVPAGGKLLGALASNGI--FLSSACGGGGSCG-QCRVKVKEGGGD----ILPTELSHISK--- 101 (409)
T ss_pred ccEEEEEc--CCCcEEEEECCCchHHHHHHHcCC--CcccCCCCccEeC-CCEEEEecCCcC----CChhhhhhcCH---
Confidence 35666663 222368999999999999999999 3446899889998 999999999632 33456667773
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeCC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVPE 151 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp~ 151 (158)
.+..+++|||||+++.+|+ +|+++.
T Consensus 102 -~e~~~g~rLaCq~~~~~d~---~ie~~~ 126 (409)
T PRK05464 102 -REAKEGWRLSCQVKVKQDM---KIEVPE 126 (409)
T ss_pred -hhccCCcEEEeeCEECCCE---EEEECc
Confidence 6788999999999999996 788874
No 12
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.55 E-value=2.2e-14 Score=99.85 Aligned_cols=83 Identities=13% Similarity=0.226 Sum_probs=63.4
Q ss_pred ceEEEEECCCCCEEEEEecC-CchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 44 IVHLFAIDPDGQKRPIIGLA-GQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~-G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
|++|+|.. .| +.|++.+ |+|||++++++|+ ...|+|+ .|.|| +|++++.+|.++..... +
T Consensus 1 ~~~v~~~~-~~--~~~~~~~~~~tlL~a~~~~gi--~~p~~Cr-~G~Cg-~C~~~~~sG~v~~~~~~---~--------- 61 (84)
T PRK10713 1 MARVTLRI-TG--TQLLCQDEHPSLLAALESHNV--AVEYQCR-EGYCG-SCRTRLVAGQVDWIAEP---L--------- 61 (84)
T ss_pred CCEEEEEe-CC--cEEEecCCCCcHHHHHHHcCC--CCCCCCC-CeECC-CCEeEEEeCeEecCCCc---c---------
Confidence 67788753 44 5788886 5999999999999 4457897 89998 99999999976542211 0
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEe
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAV 149 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~l 149 (158)
.+..++++|+||.++.+|+ +|++
T Consensus 62 -~~~~~g~~L~C~~~p~sd~---~ie~ 84 (84)
T PRK10713 62 -AFIQPGEILPCCCRAKGDI---EIEM 84 (84)
T ss_pred -chhhCCEEEEeeCEECCCE---EEeC
Confidence 1345789999999999995 7764
No 13
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.54 E-value=9e-15 Score=122.66 Aligned_cols=92 Identities=26% Similarity=0.326 Sum_probs=74.1
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccc
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRAR 124 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~ 124 (158)
++|.+. +...+++.+..|.+||.++..+|| ..++.|||.|+|| .|+|+|.+|.-+ +-+.|...++. .
T Consensus 37 ~ti~IN--~d~e~~~t~~aG~kLL~~L~~~gi--fi~SaCGGggsC~-QCkv~v~~ggge----~LpTe~sh~sk----r 103 (410)
T COG2871 37 ITIKIN--GDPEKTKTVPAGGKLLGALASSGI--FISSACGGGGSCG-QCKVRVKKGGGE----ILPTELSHISK----R 103 (410)
T ss_pred eEEEeC--CChhhceecCCchhHHHHHHhCCc--ccccCCCCCcccc-ccEEEEecCCCc----cCcchhhhhhh----h
Confidence 344442 334578999999999999999999 3346899999998 999999998533 33456677774 6
Q ss_pred cCCCCcEEeeceEEecCCCccEEEeCCC
Q 031532 125 VLNLHSRLGCQVVLTHDLEGMVVAVPEP 152 (158)
Q Consensus 125 ~~~~~sRLACQi~l~~dldG~vI~lp~~ 152 (158)
+.++|+||+||+.+..|| .|++|++
T Consensus 104 ea~eG~RLsCQ~~Vk~dm---~levpEe 128 (410)
T COG2871 104 EAKEGWRLSCQVNVKHDM---DLEVPEE 128 (410)
T ss_pred hhhccceEEEEecccccc---eeechHH
Confidence 889999999999999997 7999986
No 14
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.54 E-value=1.7e-14 Score=97.89 Aligned_cols=74 Identities=24% Similarity=0.357 Sum_probs=54.4
Q ss_pred CCCCEEEEEecCCch-HHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccccCCCC
Q 031532 52 PDGQKRPIIGLAGQT-LLKALTNS-GLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRARVLNLH 129 (158)
Q Consensus 52 ~~G~~~~v~~~~G~t-Llea~~~~-gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~~~~~~ 129 (158)
.+|+.++|++.+|+| ||++++++ |+ +..+.|+|.+ || +|+|+|.+|+. ... ....|.+.+. ..+
T Consensus 3 i~g~~~~~~~~~~~~~ll~~~~~~~gi--~i~~~C~~g~-Cg-~C~v~v~~G~~-~~~-~~~~~~~~~~--------~~~ 68 (78)
T PF00111_consen 3 INGKGVTVEVPPGETLLLDALERAGGI--GIPYSCGGGG-CG-TCRVRVLEGEV-QSN-ETFLEDEELA--------EGG 68 (78)
T ss_dssp TTTEEEEEEEETTSBBHHHHHHHTTTT--TSTTSSSSSS-SS-TTEEEEEESEE-ETT-TSSSHHHHHH--------TTE
T ss_pred ECCeEEEEEeCCCccHHHHHHHHcCCC--CcccCCCCCc-cC-CcEEEEeeCcc-cCC-cccCCHHHHH--------cCC
Confidence 468788999999999 99999999 88 4447898755 98 99999999964 212 2222322333 234
Q ss_pred cEEeeceEEe
Q 031532 130 SRLGCQVVLT 139 (158)
Q Consensus 130 sRLACQi~l~ 139 (158)
.||+||++++
T Consensus 69 ~rLaCq~~~t 78 (78)
T PF00111_consen 69 IRLACQTRVT 78 (78)
T ss_dssp EEEGGGSEES
T ss_pred CcCCcEEEeC
Confidence 5999999874
No 15
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.53 E-value=2.6e-14 Score=97.59 Aligned_cols=80 Identities=24% Similarity=0.326 Sum_probs=60.5
Q ss_pred EEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccccCC
Q 031532 48 FAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRARVLN 127 (158)
Q Consensus 48 t~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~~~~ 127 (158)
+|.. +|..++|++.+|+|||++++++|+ +..+.|++ |.|| +|+|+|.+|+....++ ..+. ..+..
T Consensus 2 ~~~~-~~~~~~~~~~~g~~ll~al~~~g~--~~~~~C~~-g~Cg-~C~v~v~~G~~~~~~~------~~~~----~~~~~ 66 (84)
T cd00207 2 TINV-PGSGVEVEVPEGETLLDAAREAGI--DIPYSCRA-GACG-TCKVEVVEGEVDQSDP------SLLD----EEEAE 66 (84)
T ss_pred EEec-CCCCEEEEECCCCcHHHHHHHcCC--CcccCCCC-cCCc-CCEEEEeeCccccCcc------cCCC----HHHHh
Confidence 4443 255578999999999999999999 34468975 7998 9999999996433221 2233 24567
Q ss_pred CCcEEeeceEEecCC
Q 031532 128 LHSRLGCQVVLTHDL 142 (158)
Q Consensus 128 ~~sRLACQi~l~~dl 142 (158)
+++||+||+++.+|+
T Consensus 67 ~~~~LaC~~~~~~~i 81 (84)
T cd00207 67 GGYVLACQTRVTDGL 81 (84)
T ss_pred CCeEEEEeCeeCCCc
Confidence 899999999998885
No 16
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.50 E-value=6.2e-14 Score=119.17 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=70.7
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccc
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRAR 124 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~ 124 (158)
.+|++...+|....+++.+|+||||+++++|+ ...+.|+ .|.|| +|+++|.+|..+. ...+...|.. .
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~--~~p~~C~-~G~Cg-~C~~~~~~G~~~~----~~~~~~~l~~----~ 70 (340)
T PRK11872 3 HKVALSFADGKTLFFPVGKDELLLDAALRNGI--NLPLDCR-EGVCG-TCQGRCESGIYSQ----DYVDEDALSE----R 70 (340)
T ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHcCC--CCcCCCC-CeECC-CCEEEEEeCcccc----CccccccCCH----H
Confidence 35565445777777899999999999999999 3446897 79998 9999999996432 1122334552 5
Q ss_pred cCCCCcEEeeceEEecCCCccEEEeCC
Q 031532 125 VLNLHSRLGCQVVLTHDLEGMVVAVPE 151 (158)
Q Consensus 125 ~~~~~sRLACQi~l~~dldG~vI~lp~ 151 (158)
+..+++||+||+++.+|+ +|+++.
T Consensus 71 ~~~~g~~L~C~~~~~~d~---~i~~~~ 94 (340)
T PRK11872 71 DLAQRKMLACQTRVKSDA---AFYFDF 94 (340)
T ss_pred HHhCCeEEEeeCEECCce---EEEecC
Confidence 667899999999999996 888775
No 17
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.48 E-value=7.3e-14 Score=118.03 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=70.7
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccc
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRAR 124 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~ 124 (158)
.+|+|.. .| ++|++.+|+||||+++++|| ...+.|+ .|.|| +|+|+|.+|..+.. ..+...|+. .
T Consensus 3 ~~v~~~~-~~--~~~~~~~g~tlL~a~~~~gi--~~~~~C~-~G~Cg-~C~~~~~~G~~~~~----~~~~~~l~~----~ 67 (339)
T PRK07609 3 FQVTLQP-SG--RQFTAEPDETILDAALRQGI--HLPYGCK-NGACG-SCKGRLLEGEVEQG----PHQASALSG----E 67 (339)
T ss_pred EEEEEec-CC--eEEEeCCCCcHHHHHHHcCC--CCCCCCC-CeECC-CCEEEEEECcEecc----cccccCCCH----H
Confidence 4678763 34 68999999999999999999 3447897 89998 99999999965321 122345652 5
Q ss_pred cCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 125 VLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 125 ~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
+..+++||+||+++.+|+ +|++|...
T Consensus 68 ~~~~g~~L~C~~~~~~d~---~i~~~~~~ 93 (339)
T PRK07609 68 ERAAGEALTCCAKPLSDL---VLEAREVP 93 (339)
T ss_pred HHhCCcEEEeeCEECCCE---EEEecccc
Confidence 667899999999999996 89888643
No 18
>PRK05713 hypothetical protein; Provisional
Probab=99.47 E-value=8.6e-14 Score=116.86 Aligned_cols=86 Identities=27% Similarity=0.282 Sum_probs=66.2
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccccc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRA 123 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~ 123 (158)
|+++++ +| ++|++.+|+||||+++++|| ...+.|+ .|.|| +|+|+|.+|..+. .+...|+ .
T Consensus 1 ~~~~~~---~~--~~~~~~~g~tlL~a~~~~gi--~~~~~C~-~G~Cg-~C~~~~~~G~~~~------~~~~~l~----~ 61 (312)
T PRK05713 1 MPELRV---GE--RRWSVPAGSNLLDALNAAGV--AVPYSCR-AGSCH-ACLVRCLQGEPED------ALPEALA----A 61 (312)
T ss_pred CCcEec---CC--eEEEECCCCcHHHHHHHcCC--CCCcCCC-CcCCC-CCeEEEEeCcccc------CccccCC----H
Confidence 455553 34 68999999999999999999 3346897 79998 9999999996431 1112344 3
Q ss_pred ccCCCCcEEeeceEEecCCCccEEEeCC
Q 031532 124 RVLNLHSRLGCQVVLTHDLEGMVVAVPE 151 (158)
Q Consensus 124 ~~~~~~sRLACQi~l~~dldG~vI~lp~ 151 (158)
++.+.++||+||+++.+|+ +|++++
T Consensus 62 ~~~~~g~~L~C~~~~~~d~---~i~~~~ 86 (312)
T PRK05713 62 EKREQGWRLACQCRVVGDL---RVEVFD 86 (312)
T ss_pred HHHhCCeEEEeECEECCce---EEEecC
Confidence 5677899999999999996 888773
No 19
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.43 E-value=1.5e-13 Score=121.68 Aligned_cols=90 Identities=22% Similarity=0.346 Sum_probs=71.3
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccccc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRA 123 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~ 123 (158)
|+.|||. |.|. +.+ .+|.|+|+++++.|+ +.-+.|||.|.|| +|+|.|.+|. .++...++-| ..+.
T Consensus 1 ~p~v~f~-psgk--r~~-~~g~~il~aar~~gv--~i~s~cggk~~cg-kc~v~v~~g~-~~i~s~~dh~-k~~~----- 66 (614)
T COG3894 1 MPLVTFM-PSGK--RGE-DEGTTILDAARRLGV--YIRSVCGGKGTCG-KCQVVVQEGN-HKIVSSTDHE-KYLR----- 66 (614)
T ss_pred CceeEee-cCCC--cCC-CCCchHHHHHHhhCc--eEeeecCCCcccc-ceEEEEEeCC-ceeccchhHH-HHHH-----
Confidence 6789997 5674 455 899999999999999 3335799999998 9999999996 4444444433 3444
Q ss_pred ccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 124 RVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 124 ~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
..+||||||.++.+|+ +|.||+++
T Consensus 67 ---~~g~rlac~~~v~gd~---~i~ip~es 90 (614)
T COG3894 67 ---ERGYRLACQAQVLGDL---VIFIPPES 90 (614)
T ss_pred ---hhceeeeeehhhcCce---EEEcCchh
Confidence 2499999999999996 99999875
No 20
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.27 E-value=1.6e-11 Score=103.81 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=65.0
Q ss_pred CcceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccc
Q 031532 42 DRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNS 121 (158)
Q Consensus 42 ~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~ 121 (158)
+..++|++.+ .| +++.+.+|+|||++++++|| ...+.|+ .|.|| +|++++.+|..+... ...|+
T Consensus 246 ~~~~~v~~~~-~~--~~~~~~~~~~lL~~~~~~gi--~~~~~C~-~G~Cg-~C~~~~~~G~v~~~~------~~~l~--- 309 (332)
T PRK10684 246 TSGLTFTKLQ-PA--REFYAPVGTTLLEALESNKV--PVVAACR-AGVCG-CCKTKVVSGEYTVSS------TMTLT--- 309 (332)
T ss_pred CCceEEEEec-CC--EEEEeCCCChHHHHHHHcCC--CccCCCC-CcCCC-CCEEEEecCcccccc------cccCC---
Confidence 3456677764 33 67899999999999999999 3447897 89998 999999999654211 12355
Q ss_pred ccccCCCCcEEeeceEEecCC
Q 031532 122 RARVLNLHSRLGCQVVLTHDL 142 (158)
Q Consensus 122 ~~~~~~~~sRLACQi~l~~dl 142 (158)
..++.+|+||+||.++.+|+
T Consensus 310 -~~~~~~g~~l~C~~~~~~d~ 329 (332)
T PRK10684 310 -PAEIAQGYVLACSCHPQGDL 329 (332)
T ss_pred -HHHHhCCcEEEeeCEECCCe
Confidence 35677899999999999995
No 21
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.24 E-value=3.7e-11 Score=102.08 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=65.5
Q ss_pred cceEEEEECCCCCEEE-EEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccc
Q 031532 43 RIVHLFAIDPDGQKRP-IIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNS 121 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~-v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~ 121 (158)
...+|+|. .+|.... +.+.+|+|||++++++|| ...+.|+ .|.|| +|++++.+|..+. . +...|+
T Consensus 261 ~~~~v~~~-~~~~~~~~~~~~~~~slL~~~~~~gi--~~~~~C~-~G~Cg-~C~~~~~~G~v~~-~-----~~~~l~--- 326 (352)
T TIGR02160 261 DVSKVTVT-LDGRSTETSSLSRDESVLDAALRARP--DLPFACK-GGVCG-TCRAKVLEGKVDM-E-----RNYALE--- 326 (352)
T ss_pred CceEEEEE-ECCceEEEEecCCCCcHHHHHHHcCC--CCcCCCC-CccCC-CCEEEEecccccc-c-----cccCCC---
Confidence 34567775 3565443 578999999999999999 4457897 59998 9999999996432 1 122355
Q ss_pred ccccCCCCcEEeeceEEecCCCccEEE
Q 031532 122 RARVLNLHSRLGCQVVLTHDLEGMVVA 148 (158)
Q Consensus 122 ~~~~~~~~sRLACQi~l~~dldG~vI~ 148 (158)
..++.++++|+||+++.+|- ++|.
T Consensus 327 -~~~~~~g~~l~C~~~~~~~~--~~~~ 350 (352)
T TIGR02160 327 -PDEVDAGYVLTCQAYPLSDK--LVVD 350 (352)
T ss_pred -HHHHhCCcEEEeeEEECCCc--EEEe
Confidence 25667899999999999872 3554
No 22
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.64 E-value=6.3e-08 Score=67.11 Aligned_cols=51 Identities=31% Similarity=0.594 Sum_probs=34.6
Q ss_pred CcceEEEEECCCCCEEEEEecCCchHHHHHHHCCC-CCCCcCC-------CCCcccCCCccEEEEc
Q 031532 42 DRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL-IDPASHR-------LEEIDACSAECEVNIA 99 (158)
Q Consensus 42 ~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi-i~~~~~~-------CgG~g~CGatC~V~V~ 99 (158)
|++++|+| || +.+++.+|+||++|+.++|+ +...++. | +.|.|+ .|.|.|.
T Consensus 1 ~~~v~i~i---dG--~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~-~~g~C~-~C~Vev~ 59 (82)
T PF13510_consen 1 DKMVTITI---DG--KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLC-PIGSCR-LCLVEVD 59 (82)
T ss_dssp -EEEEEEE---TT--EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSS-SSTT-S-S-EEEES
T ss_pred CCEEEEEE---CC--EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccC-Cccccc-eEEEEEC
Confidence 46777887 67 67899999999999999999 3333222 3 357898 9999994
No 23
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.42 E-value=7.9e-07 Score=72.38 Aligned_cols=48 Identities=29% Similarity=0.525 Sum_probs=37.6
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCC-----CcccCCCccEEEEc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLE-----EIDACSAECEVNIA 99 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~Cg-----G~g~CGatC~V~V~ 99 (158)
|++|++ || +.|++.+|+|||++++++|+ ...+.|. +.|.|+ .|.|.|.
T Consensus 3 ~v~i~i---dg--~~~~~~~g~til~a~~~~gi--~ip~~C~~~~~~~~G~C~-~C~V~v~ 55 (234)
T PRK07569 3 VKTLTI---DD--QLVSAREGETLLEAAREAGI--PIPTLCHLDGLSDVGACR-LCLVEIE 55 (234)
T ss_pred eEEEEE---CC--EEEEeCCCCHHHHHHHHcCC--CCCcCcCCCCCCCCCccC-CcEEEEC
Confidence 455554 67 56999999999999999999 2234565 578998 9999993
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.28 E-value=2.5e-06 Score=80.67 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=57.1
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCC-----CcccCCCccEEEEcCCCccCCCCCCHHHHHhhh
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLE-----EIDACSAECEVNIAQEWLDRLPPRSYEEEYVLK 118 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~Cg-----G~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~ 118 (158)
|++|++ || +++++.+|+|||++++++|| ...+.|. ..|.|+ .|.|+|.+|..
T Consensus 1 ~~~i~i---dg--~~~~~~~g~til~a~~~~gi--~ip~~C~~~~~~~~G~C~-~C~v~v~~g~~--------------- 57 (847)
T PRK08166 1 MATIHV---DG--KEYEVNGADNLLEACLSLGI--DIPYFCWHPALGSVGACR-QCAVKQYQNPE--------------- 57 (847)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCC--CCCccccCCCCCCCCccC-CCeEEEeecCc---------------
Confidence 677776 57 56889999999999999999 2335685 368998 99999987621
Q ss_pred cccccccCCCCcEEeeceEEecCCCccEEEeCC
Q 031532 119 RNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPE 151 (158)
Q Consensus 119 ~~~~~~~~~~~sRLACQi~l~~dldG~vI~lp~ 151 (158)
+..++.++||++.+.++ |+|....
T Consensus 58 ------~~~~~~~~aC~~~v~~g---m~v~t~~ 81 (847)
T PRK08166 58 ------DTRGRLVMSCMTPATDG---TFISIDD 81 (847)
T ss_pred ------cCCCCcccCcCCCCCCC---CEEEeCC
Confidence 11246788999888865 5887654
No 25
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=97.95 E-value=4e-05 Score=64.74 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=37.9
Q ss_pred CcceEEEEECCCCCEEEEEe-cCCchHHHHHHHCCC-CCCCcC--CCCCcccCCCccEEEEc
Q 031532 42 DRIVHLFAIDPDGQKRPIIG-LAGQTLLKALTNSGL-IDPASH--RLEEIDACSAECEVNIA 99 (158)
Q Consensus 42 ~~m~~Vt~v~~~G~~~~v~~-~~G~tLlea~~~~gi-i~~~~~--~CgG~g~CGatC~V~V~ 99 (158)
+..++|.++ .|| ++|++ .+|+|||||++++|| |+.++| .....|+|. .|.|.|.
T Consensus 64 ~~~~~~~I~-IDG--k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CR-lClVEVe 121 (297)
T PTZ00305 64 EHKPRAIMF-VNK--RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCR-MCLVQVD 121 (297)
T ss_pred ccCCceEEE-ECC--EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccc-eeEEEEC
Confidence 334444443 277 68999 899999999999999 555432 223355797 9999983
No 26
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.87 E-value=3.4e-05 Score=73.14 Aligned_cols=49 Identities=18% Similarity=0.353 Sum_probs=39.4
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCC-CCCCcC--CCCCcccCCCccEEEE
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL-IDPASH--RLEEIDACSAECEVNI 98 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi-i~~~~~--~CgG~g~CGatC~V~V 98 (158)
|++|++ || +++++.+|+|||++++++|| ++..|+ .|...|.|+ .|.|.|
T Consensus 1 mv~i~I---dG--~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr-~C~VeV 52 (819)
T PRK08493 1 MITITI---NG--KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACR-LCMVEA 52 (819)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCcccc-ceEEEE
Confidence 567776 67 67899999999999999999 544442 566678898 999998
No 27
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=97.61 E-value=0.00021 Score=63.63 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=44.9
Q ss_pred EEEEecCCchHHHHHHHCCCC--C--CCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccccCCCCcEE
Q 031532 57 RPIIGLAGQTLLKALTNSGLI--D--PASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRARVLNLHSRL 132 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~gii--~--~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~~~~~~sRL 132 (158)
.+|.+.+|+|||+++.+.+.. . ...++|+ .|.|| +|.|.| +|. .+|
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~-~g~Cg-~C~v~v-~G~---------------------------~~l 72 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCR-AGQCG-SCAVTI-NGE---------------------------PVL 72 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCC-CCCCC-CCEEEE-CCe---------------------------Eec
Confidence 455667999999999964320 0 2236796 79998 999997 441 267
Q ss_pred eeceEEecCCCccEEEeCC
Q 031532 133 GCQVVLTHDLEGMVVAVPE 151 (158)
Q Consensus 133 ACQi~l~~dldG~vI~lp~ 151 (158)
+||+.+.++ ++|+.+.
T Consensus 73 aC~~~~~~~---~~i~~~~ 88 (486)
T PRK06259 73 ACKTEVEDG---MIIEPLD 88 (486)
T ss_pred ccccCCCCC---CEEEecC
Confidence 999998876 5888765
No 28
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.53 E-value=0.00027 Score=54.91 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=41.3
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcC
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
..|+|. -+|+.+++++.++++|++.+++.|+. .....|+ .|.|| .|-|.|..
T Consensus 7 ~~i~~~-vNG~~~~~~~~~~~~Ll~~LR~~glt-gtK~GC~-~G~CG-ACtVlvdg 58 (159)
T PRK09908 7 ITIECT-INGMPFQLHAAPGTPLSELLREQGLL-SVKQGCC-VGECG-ACTVLVDG 58 (159)
T ss_pred eeEEEE-ECCEEEEEecCCCCcHHHHHHHcCCC-CCCCCcC-CCCCC-CcEEEECC
Confidence 345554 37988999999999999999998873 3335795 79999 99999943
No 29
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.45 E-value=0.00043 Score=58.18 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=49.8
Q ss_pred ChhhhHHHhhhccccCCCcccccccccccCcccc----C-CCCCCCCcceEEEEE--CCC-C-----CEEEEEecC-Cch
Q 031532 1 MAISTLQKLSSQIHRLPSLSPLSKSLTHRSSATA----A-PSAKVADRIVHLFAI--DPD-G-----QKRPIIGLA-GQT 66 (158)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~m~~Vt~v--~~~-G-----~~~~v~~~~-G~t 66 (158)
||...||+|. ....++|.+-. +++.+++ | +-.....++++|++. +++ + +..+|++.+ |.|
T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~t 74 (276)
T PLN00129 1 MAAGLLRRLA--GAKAGLLAPAA----AASAAASAETKASSKGSKPSNLKEFQIYRWNPDNPGKPHLQSYKVDLNDCGPM 74 (276)
T ss_pred Cchhhhhhhh--cccccccccch----hhhhhhcccccccCCCCCCCceEEEEEEeeCCCCCCCceeEEEEeCCCCCCch
Confidence 6667778775 34566666555 2222222 1 222223345555544 332 1 112444444 799
Q ss_pred HHHHHHHC--CC--CCCCcCCCCCcccCCCccEEEE
Q 031532 67 LLKALTNS--GL--IDPASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 67 Llea~~~~--gi--i~~~~~~CgG~g~CGatC~V~V 98 (158)
+|+++..- .. ...+-++|. .|.|| +|-+.|
T Consensus 75 VLd~L~~Ik~~~D~sLsfr~sCr-~giCG-sCam~I 108 (276)
T PLN00129 75 VLDVLIKIKNEQDPSLTFRRSCR-EGICG-SCAMNI 108 (276)
T ss_pred HHHHHHHHHHcCCCCeEEeccCC-CCCCC-CCeeEE
Confidence 99999752 22 112336896 78999 999999
No 30
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.43 E-value=0.00046 Score=65.22 Aligned_cols=52 Identities=25% Similarity=0.432 Sum_probs=39.7
Q ss_pred CcceEEEEECCCCCEEEEEecCCchHHHHHHHCCC-CCCCcC--CCCCcccCCCccEEEEc
Q 031532 42 DRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL-IDPASH--RLEEIDACSAECEVNIA 99 (158)
Q Consensus 42 ~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi-i~~~~~--~CgG~g~CGatC~V~V~ 99 (158)
++|++|++ || +++++.+|+|||+++..+|| |+..|| .....|.|. .|.|.|.
T Consensus 2 ~~~v~~~i---dg--~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr-~C~Vev~ 56 (797)
T PRK07860 2 PDLVTLTI---DG--VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACR-QCLVEVE 56 (797)
T ss_pred CceEEEEE---CC--EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccC-ccEEEEC
Confidence 35888886 67 68999999999999999999 443322 112467897 9999993
No 31
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.39 E-value=0.00045 Score=56.17 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=39.3
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEcCC
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIAQE 101 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~~g 101 (158)
.+|+|. -+|+.+++++.++.+|+++++++ ++ ......|+ .|.|| .|.|.| +|
T Consensus 50 ~~i~~~-VNG~~~~~~v~~~~tLLd~LR~~l~l-tGtK~GC~-~G~CG-ACTVlV-dG 102 (217)
T PRK11433 50 SPVTLK-VNGKTEQLEVDTRTTLLDALREHLHL-TGTKKGCD-HGQCG-ACTVLV-NG 102 (217)
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCC-CCCCCCCC-CCCcC-ceEEEE-CC
Confidence 345554 37988889999999999999986 44 23335795 79999 999966 44
No 32
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.35 E-value=0.00051 Score=64.02 Aligned_cols=51 Identities=33% Similarity=0.441 Sum_probs=39.0
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCC-CCCCcC--CCCCcccCCCccEEEEcC
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL-IDPASH--RLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi-i~~~~~--~CgG~g~CGatC~V~V~~ 100 (158)
|++|++ || ++|++++|+|||||++++|| |+..|| .....|.|. .|.|.|..
T Consensus 1 m~~~~I---dg--~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr-~ClVev~~ 54 (687)
T PRK09130 1 MVKLKV---DG--KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCR-MCLVEVKG 54 (687)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCC-CCEEEECC
Confidence 678886 67 68999999999999999999 544322 112356797 99999954
No 33
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.35 E-value=0.00052 Score=63.40 Aligned_cols=47 Identities=26% Similarity=0.480 Sum_probs=36.8
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCC-CCCCcCCCC-----CcccCCCccEEEEc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL-IDPASHRLE-----EIDACSAECEVNIA 99 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi-i~~~~~~Cg-----G~g~CGatC~V~V~ 99 (158)
|++|++ || +++++.+|+||++++.++|+ +. +.|. +.|.|+ .|.|.|.
T Consensus 3 ~v~~~i---dg--~~~~~~~g~ti~~a~~~~g~~ip---~~c~~~~~~~~g~C~-~C~V~v~ 55 (652)
T PRK12814 3 TISLTI---NG--RSVTAAPGTSILEAAASAGITIP---TLCFHQELEATGSCW-MCIVEIK 55 (652)
T ss_pred eEEEEE---CC--EEEEeCCcCcHHHHHHHcCCccc---cccCCCCCCCccccc-eeEEEEC
Confidence 445554 67 68999999999999999998 43 3464 378898 9999883
No 34
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=97.32 E-value=0.00043 Score=64.61 Aligned_cols=52 Identities=31% Similarity=0.498 Sum_probs=41.2
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCC-CCCCc--CCCCCcccCCCccEEEEcCC
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL-IDPAS--HRLEEIDACSAECEVNIAQE 101 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi-i~~~~--~~CgG~g~CGatC~V~V~~g 101 (158)
|++|++ || ++|++++|+|||||++++|| |+.+| ..|+-.|+|. .|.|.|...
T Consensus 1 m~tI~I---DG--~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCR-mClVEveg~ 55 (693)
T COG1034 1 MVTITI---DG--KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACR-MCLVEVEGA 55 (693)
T ss_pred CeEEEE---CC--EEEecCCCcHHHHHHHHcCCCCCcccccCCCCccccee-EEEEEecCC
Confidence 677776 67 68999999999999999999 65544 3466666787 999988553
No 35
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.18 E-value=0.0019 Score=55.33 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=33.7
Q ss_pred EEEEEecCCchHHHHHHHCCC-CC-CCc--CCCCCcccCCCccEEEEc
Q 031532 56 KRPIIGLAGQTLLKALTNSGL-ID-PAS--HRLEEIDACSAECEVNIA 99 (158)
Q Consensus 56 ~~~v~~~~G~tLlea~~~~gi-i~-~~~--~~CgG~g~CGatC~V~V~ 99 (158)
..+|++.+|.||||++...++ ++ .++ .+|. .+.|| +|-|.|.
T Consensus 20 ~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~-~~~Cg-~C~v~in 65 (329)
T PRK12577 20 TYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCR-NTICG-SCAMRIN 65 (329)
T ss_pred EEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCC-CCCCC-CCEEEEC
Confidence 367888999999999999998 54 233 4587 68998 9999993
No 36
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.07 E-value=0.0018 Score=60.91 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=37.2
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCC-CCCCcCCCCC-----cccCCCccEEEEc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL-IDPASHRLEE-----IDACSAECEVNIA 99 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi-i~~~~~~CgG-----~g~CGatC~V~V~ 99 (158)
|++|++ || +++++.+|+||+++++.+|| |+ +.|.- .|.|. .|.|.|.
T Consensus 1 m~~~~i---dg--~~~~~~~g~~il~a~~~~g~~ip---~~c~~~~~~~~~~C~-~C~v~v~ 53 (776)
T PRK09129 1 MVEIEI---DG--KKVEVPEGSMVIEAADKAGIYIP---RFCYHKKLSIAANCR-MCLVEVE 53 (776)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCCCC---cccCCCCCCCCCCcc-eeEEEEC
Confidence 677776 67 68999999999999999999 43 34542 35797 9999993
No 37
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.04 E-value=0.002 Score=49.57 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=36.5
Q ss_pred CCCEEEEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEcC
Q 031532 53 DGQKRPIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 53 ~G~~~~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
+|+.++++++++++|++++++. |+. .....|+ .|.|| .|-|.|..
T Consensus 7 NG~~~~~~~~~~~~Ll~~LR~~lglt-g~K~gC~-~G~CG-ACtVlvdg 52 (148)
T TIGR03193 7 NGRWREDAVADNMLLVDYLRDTVGLT-GTKQGCD-GGECG-ACTVLVDG 52 (148)
T ss_pred CCEEEEeecCCCCcHHHHHHHhcCCC-CCCCCCC-CCCCC-CCEEEECC
Confidence 6888899999999999999975 662 3335795 79999 99999943
No 38
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=96.96 E-value=0.0024 Score=46.71 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=42.2
Q ss_pred EEEEecCCchHHHHHHHC--CC--CCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccccCCCCcEE
Q 031532 57 RPIIGLAGQTLLKALTNS--GL--IDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRARVLNLHSRL 132 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~--gi--i~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~~~~~~sRL 132 (158)
.+|++.++.|+|+++..- .. ....-++|+ .|.|| +|-|.| +| ..||
T Consensus 21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr-~giCG-sCam~I-NG---------------------------~~~L 70 (110)
T PF13085_consen 21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCR-SGICG-SCAMRI-NG---------------------------RPRL 70 (110)
T ss_dssp EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSS-SSSSS-TTEEEE-TT---------------------------EEEE
T ss_pred EEecCCCCCcHHHHHHHHHhccCCCeEEEecCC-CCCCC-CCEEEE-CC---------------------------ceec
Confidence 567889999999999632 11 113447896 78999 999999 33 1278
Q ss_pred eeceEEecCCCc----cEEE
Q 031532 133 GCQVVLTHDLEG----MVVA 148 (158)
Q Consensus 133 ACQi~l~~dldG----~vI~ 148 (158)
||+..+.+..+. ++|+
T Consensus 71 AC~t~v~~~~~~~~~~i~Ie 90 (110)
T PF13085_consen 71 ACKTQVDDLIEKFGNVITIE 90 (110)
T ss_dssp GGGSBGGGCTTSETBEEEEE
T ss_pred ceeeEchhccCCCcceEEEE
Confidence 999988877643 5555
No 39
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=96.90 E-value=0.003 Score=48.95 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=37.7
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCC
Q 031532 53 DGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQE 101 (158)
Q Consensus 53 ~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g 101 (158)
+|+.+++++.++.+|++++++..-.-.....| |.|.|| .|-|.|...
T Consensus 9 NG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC-~~g~CG-ACtVlvDG~ 55 (156)
T COG2080 9 NGEPVELDVDPRTPLLDVLRDELGLTGTKKGC-GHGQCG-ACTVLVDGE 55 (156)
T ss_pred CCeEEEEEeCCCChHHHHHHHhcCCCCcCCCC-CCccCC-ceEEEECCe
Confidence 79999999999999999999664323344679 589998 999998543
No 40
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.86 E-value=0.0023 Score=52.91 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=28.9
Q ss_pred EEEEecCCchHHHHHHHCC---------C--CCCCcCCCCCcccCCCccEEEE
Q 031532 57 RPIIGLAGQTLLKALTNSG---------L--IDPASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~g---------i--i~~~~~~CgG~g~CGatC~V~V 98 (158)
.+|++.+|.|||+++..-. . ....-++|. .|.|| +|-++|
T Consensus 25 y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCG-sCam~I 75 (249)
T PRK08640 25 FEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCG-ACSMVI 75 (249)
T ss_pred EEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccC-CCCCC-cCeeEE
Confidence 5667779999999997321 1 112336896 78999 999999
No 41
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=96.79 E-value=0.0035 Score=57.33 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=34.5
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCCCCcCCCC-----CcccCCCccEEEEc
Q 031532 53 DGQKRPIIGLAGQTLLKALTNSGLIDPASHRLE-----EIDACSAECEVNIA 99 (158)
Q Consensus 53 ~G~~~~v~~~~G~tLlea~~~~gii~~~~~~Cg-----G~g~CGatC~V~V~ 99 (158)
|| ++|++.+|+||+++++++|| ...+.|. ..|.|. .|.|.|.
T Consensus 4 dg--~~~~~~~g~~il~a~~~~gi--~ip~~C~~~~l~~~g~Cr-~C~v~v~ 50 (603)
T TIGR01973 4 DG--KELEVPKGTTVLQACLSAGI--EIPRFCYHEKLSIAGNCR-MCLVEVE 50 (603)
T ss_pred CC--EEEEeCCCCHHHHHHHHcCC--CccccCCCCCCCCCCccc-cCEEEEC
Confidence 57 68999999999999999999 2235674 467897 9999994
No 42
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=96.70 E-value=0.0034 Score=51.67 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=29.2
Q ss_pred EEEEecCCchHHHHHHHCCC-CC---CCcCCCCCcccCCCccEEEEc
Q 031532 57 RPIIGLAGQTLLKALTNSGL-ID---PASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~gi-i~---~~~~~CgG~g~CGatC~V~V~ 99 (158)
..|++.+|.|||+++..-+- .+ ..-++|+ .|.|| +|-|+|.
T Consensus 27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~-~giCG-sC~v~In 71 (244)
T PRK12385 27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCR-MAICG-SCGMMVN 71 (244)
T ss_pred EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCC-CCcCC-CCcceEC
Confidence 45677799999999964321 11 2235796 68999 9999994
No 43
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=96.69 E-value=0.0037 Score=51.32 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=29.7
Q ss_pred EEEEecCCchHHHHHHHCC--C--CCCCcCCCCCcccCCCccEEEE
Q 031532 57 RPIIGLAGQTLLKALTNSG--L--IDPASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~g--i--i~~~~~~CgG~g~CGatC~V~V 98 (158)
.+|++.+|.|||+++..-. . -..+-++|. .|.|| +|-+.|
T Consensus 26 y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr-~giCG-sCam~I 69 (239)
T PRK13552 26 YQLEETPGMTLFIALNRIREEQDPSLQFDFVCR-AGICG-SCAMVI 69 (239)
T ss_pred EEecCCCCCCHHHHHHHHHhcCCCCeeEeccCC-CCCCC-CceeEE
Confidence 5677789999999997432 2 112337896 78999 999999
No 44
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=96.47 E-value=0.006 Score=57.56 Aligned_cols=53 Identities=32% Similarity=0.567 Sum_probs=39.5
Q ss_pred CCcceEEEEECCCCCEEEEEecCCchHHHHHHHCCC-CCCCcC--CCCCcccCCCccEEEEc
Q 031532 41 ADRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL-IDPASH--RLEEIDACSAECEVNIA 99 (158)
Q Consensus 41 ~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi-i~~~~~--~CgG~g~CGatC~V~V~ 99 (158)
+.+|++|++ || +.+++.+|+|||+++.++|| +++.|| .-+..++|- +|.|.+.
T Consensus 2 ~~~~i~vti---dg--~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd-~ClVEid 57 (978)
T COG3383 2 AEKMITVTI---DG--RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCD-TCLVEID 57 (978)
T ss_pred CceeEEEEE---CC--eEEecCCChHHHHHHHhcCCcccceeccCCCCcccccc-eEEEEec
Confidence 457888887 67 57899999999999999999 544332 113345796 9999963
No 45
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=96.43 E-value=0.012 Score=45.39 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=36.4
Q ss_pred CCCEEEEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEcC
Q 031532 53 DGQKRPIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 53 ~G~~~~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
+|+.+++.+.++.+|++.+++. |+. .....|+ .|.|| .|.|.|..
T Consensus 9 NG~~~~~~~~~~~~Ll~~LR~~~~lt-gtK~gC~-~G~CG-ACtVlvdG 54 (151)
T TIGR03198 9 NGQAWEVAAVPTTRLSDLLRKELQLT-GTKVSCG-IGRCG-ACSVLIDG 54 (151)
T ss_pred CCEEEEeecCCCcHHHHHHHhccCCC-CCCCCCC-CCcCC-ccEEEECC
Confidence 7888889999999999999985 762 2234695 79999 99999944
No 46
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=96.04 E-value=0.012 Score=48.43 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=28.8
Q ss_pred EEEEecCCchHHHHHHHCC--C--CCCCcCCCCCcccCCCccEEEE
Q 031532 57 RPIIGLAGQTLLKALTNSG--L--IDPASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~g--i--i~~~~~~CgG~g~CGatC~V~V 98 (158)
.+|+..+|.|||+++..-. . ...+-++|. .|.|| +|-+.|
T Consensus 22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR-~gICG-SCam~I 65 (234)
T COG0479 22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCR-EGICG-SCAMNI 65 (234)
T ss_pred EEecCCCCCcHHHHHHHHHHhcCCccchhhhcc-CCcCC-cceeEE
Confidence 3455679999999997322 2 223447897 68898 999998
No 47
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=95.95 E-value=0.016 Score=48.06 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=28.2
Q ss_pred EEEE-ecCCchHHHHHHHC-------CC-CCCCcCCCCCcccCCCccEEEE
Q 031532 57 RPII-GLAGQTLLKALTNS-------GL-IDPASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 57 ~~v~-~~~G~tLlea~~~~-------gi-i~~~~~~CgG~g~CGatC~V~V 98 (158)
.+|+ +.+|.|||+++..- +- ...+-++|. .|.|| +|-++|
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCG-sCam~I 70 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCR-EGICG-MCGLVI 70 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEecccc-CCcCC-cceeEE
Confidence 4455 56899999999732 11 123447896 78999 999999
No 48
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=95.92 E-value=0.025 Score=47.47 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=32.4
Q ss_pred EEEEEecCCchHHHHHHHCCC-CCC---CcCCCCCcccCCCccEEEE
Q 031532 56 KRPIIGLAGQTLLKALTNSGL-IDP---ASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 56 ~~~v~~~~G~tLlea~~~~gi-i~~---~~~~CgG~g~CGatC~V~V 98 (158)
..+|++.+|.|||+++...+. +++ .-++|+ .|.|| .|-|.|
T Consensus 26 ~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~-~G~Cg-sC~v~I 70 (279)
T PRK12576 26 EYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCH-MAVCG-SCGMKI 70 (279)
T ss_pred EEEEecCCCCHHHHHHHHhCCccCCCceecCCCC-CCCCC-CCEEEE
Confidence 367788999999999999765 222 236794 89998 999999
No 49
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=95.45 E-value=0.032 Score=45.34 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=32.1
Q ss_pred EEEEEec-CCchHHHHHHHCC-CCC---CCcCCCCCcccCCCccEEEEc
Q 031532 56 KRPIIGL-AGQTLLKALTNSG-LID---PASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 56 ~~~v~~~-~G~tLlea~~~~g-ii~---~~~~~CgG~g~CGatC~V~V~ 99 (158)
..+|++. +|.|||+++...+ ..+ ....+| +.|.|| +|.|.|.
T Consensus 19 ~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c-~~g~Cg-~C~v~vn 65 (232)
T PRK05950 19 TYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSC-REGVCG-SDAMNIN 65 (232)
T ss_pred EEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCC-CCCCCC-CCEEEEC
Confidence 3567788 9999999999987 321 122579 579998 9999994
No 50
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=95.22 E-value=0.062 Score=44.59 Aligned_cols=43 Identities=12% Similarity=0.232 Sum_probs=32.6
Q ss_pred EEEEEecCCchHHHHHHHCCC-CC---CCcCCCCCcccCCCccEEEEcC
Q 031532 56 KRPIIGLAGQTLLKALTNSGL-ID---PASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 56 ~~~v~~~~G~tLlea~~~~gi-i~---~~~~~CgG~g~CGatC~V~V~~ 100 (158)
..+|++.++.|||+++.+-+. .+ ..-++|+ .|.|| +|-|.|..
T Consensus 21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~-~g~CG-sCa~~InG 67 (251)
T PRK12386 21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCK-AGKCG-SCSAEING 67 (251)
T ss_pred EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCC-CCcCC-CCEEEECc
Confidence 367788899999999998553 11 2336895 78999 99999943
No 51
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=95.21 E-value=0.049 Score=52.86 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=38.3
Q ss_pred EEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcC
Q 031532 47 LFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 47 Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
|+|. -+|+.+++++.++++|++.+++.|+.. ....|.+.|.|| .|-|.|..
T Consensus 3 i~~~-vNg~~~~~~~~~~~~l~~~LR~~~~~~-~k~g~c~~g~CG-aCtv~~dg 53 (956)
T PRK09800 3 IHFT-LNGAPQELTVNPGENVQKLLFNMGMHS-VRNSDDGFGFAG-SDAIIFNG 53 (956)
T ss_pred EEEE-ECCEEEEEecCCCCCHHHHHHHCCCCc-cccCCCCcccCC-CCEEEECC
Confidence 4443 378888999999999999999977732 223333689998 99999943
No 52
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.01 E-value=0.046 Score=49.04 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=35.7
Q ss_pred CCCEEEE-EecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEc
Q 031532 53 DGQKRPI-IGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 53 ~G~~~~v-~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~ 99 (158)
+|+.+++ ++.++++|++.++++ |+- .....|+ .|.|| .|-|.|.
T Consensus 6 Ng~~~~~~~~~~~~~ll~~lR~~~~l~-g~k~gC~-~G~CG-aCtv~~~ 51 (467)
T TIGR02963 6 NGETVTLSDVDPTRTLLDYLREDAGLT-GTKEGCA-EGDCG-ACTVVVG 51 (467)
T ss_pred CCEEEEeecCCCCCCHHHHHHHhcCCC-CCCcccC-CCCCC-ceEEEEE
Confidence 6888888 699999999999975 772 3335795 79999 9999993
No 53
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=94.75 E-value=0.031 Score=44.96 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=30.7
Q ss_pred EEEEecCCchHHHHHHHCCC-CC---CCcCCCCCcccCCCccEEEEc
Q 031532 57 RPIIGLAGQTLLKALTNSGL-ID---PASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~gi-i~---~~~~~CgG~g~CGatC~V~V~ 99 (158)
.++++.+|+|||+++.+.+. .+ ....+|+ .|.|| +|-|.|.
T Consensus 17 ~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~-~g~Cg-~C~v~vn 61 (220)
T TIGR00384 17 YEVPADEGMTVLDALNYIKDEQDPSLAFRRSCR-NGICG-SCAMNVN 61 (220)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCCCceeecccC-CCCCC-CCeeEEC
Confidence 56778899999999998652 11 1225795 79998 9999984
No 54
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=94.35 E-value=0.074 Score=51.61 Aligned_cols=46 Identities=11% Similarity=0.103 Sum_probs=36.2
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcC
Q 031532 53 DGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 53 ~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
+|+.+++++.++++|++.+++.|+...-.+.| |.|.|| .|-|.|..
T Consensus 4 Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c-~~g~CG-aCtv~~dg 49 (951)
T TIGR03313 4 NGAPQTLECKLGENVQTLLFNMGMHSVRNSDD-GFGFAG-SDAILFNG 49 (951)
T ss_pred CCEEEEEecCCCCCHHHHHHHCCCCCCcCCCC-CcccCC-CCEEEECC
Confidence 68888999999999999999988732211246 588998 99999943
No 55
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=94.06 E-value=0.081 Score=43.42 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=25.8
Q ss_pred EEEecC-CchHHHHHHHCCCCC---CCcCCCCCcccCCCccEEEE
Q 031532 58 PIIGLA-GQTLLKALTNSGLID---PASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 58 ~v~~~~-G~tLlea~~~~gii~---~~~~~CgG~g~CGatC~V~V 98 (158)
+|++.+ +.|+|+++..-.-.| ..-++|. .|.|| +|-+.|
T Consensus 26 ~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr-~giCG-sCa~~i 68 (235)
T PRK12575 26 EIAPRAEDRMLLDVLGRVKAQDETLSYRRSCR-EGICG-SDAMNI 68 (235)
T ss_pred EecCCCCCCcHHHHHHHHHhcCCCeeeeccCC-CCCCC-CCeeEE
Confidence 344444 458999997432111 2337896 78999 999999
No 56
>PLN00192 aldehyde oxidase
Probab=92.31 E-value=0.29 Score=49.20 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=35.6
Q ss_pred CCCEEEE-EecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEc
Q 031532 53 DGQKRPI-IGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 53 ~G~~~~v-~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~ 99 (158)
+|+.+++ .+.++.+|++.++++ |+- .....|+ .|.|| .|-|.|.
T Consensus 11 Ng~~~~~~~~~p~~~Ll~~LR~~~~lt-gtK~gC~-~G~CG-aCtV~v~ 56 (1344)
T PLN00192 11 NGERFELSSVDPSTTLLEFLRTQTPFK-SVKLGCG-EGGCG-ACVVLLS 56 (1344)
T ss_pred CCEEEEeccCCCCCcHHHHHHHhhCCC-CcCCCCC-CCcCC-CcEEEEe
Confidence 7888888 689999999999976 662 3335795 79999 9999994
No 57
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=91.76 E-value=0.24 Score=49.70 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=36.8
Q ss_pred EEEECCCCCEE-EEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEcC
Q 031532 47 LFAIDPDGQKR-PIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 47 Vt~v~~~G~~~-~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
|+|. -+|+.. ...+.++++||+.++++ |+. .....|+ .|.|| .|-|.|..
T Consensus 3 ~~~~-~Ng~~~~~~~~~~~~~ll~~LR~~~~l~-gtk~gC~-~G~CG-aCtV~~~~ 54 (1330)
T TIGR02969 3 LLFY-VNGRKVVEKNVDPETMLLPYLRKKLRLT-GTKYGCG-GGGCG-ACTVMISR 54 (1330)
T ss_pred EEEE-ECCEEEEeccCCCCCcHHHHHHhhcCCC-CCCCCcC-CCCCC-CcEEEECC
Confidence 4443 368765 45789999999999975 762 2335795 79999 99999953
No 58
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=91.32 E-value=0.47 Score=45.61 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=33.3
Q ss_pred CCCEEEEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEcC
Q 031532 53 DGQKRPIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 53 ~G~~~~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
+|. .+++.++++|++.++++ |+. .....|+ .|.|| .|-|.|..
T Consensus 6 ng~--~~~~~~~~~l~~~lr~~~~~~-~~k~gc~-~g~cg-actv~~dg 49 (848)
T TIGR03311 6 NGR--EVDVNEEKKLLEFLREDLRLT-GVKNGCG-EGACG-ACTVIVNG 49 (848)
T ss_pred CCE--EeeCCCCCcHHHHHHHhcCCC-cCCCCCC-CCCCC-CcEEEECC
Confidence 563 67889999999999974 773 2235795 79999 99999943
No 59
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.13 E-value=1.5 Score=42.72 Aligned_cols=50 Identities=26% Similarity=0.260 Sum_probs=35.3
Q ss_pred EEEECCCCCEEEEEecCCchHHHHHHHCCCC---------CCCcCCCCCcccCCCccEEEEcCC
Q 031532 47 LFAIDPDGQKRPIIGLAGQTLLKALTNSGLI---------DPASHRLEEIDACSAECEVNIAQE 101 (158)
Q Consensus 47 Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii---------~~~~~~CgG~g~CGatC~V~V~~g 101 (158)
|+|. .|| +.+++.+|+||..|+..+|+. .+-...|. .+.|- .|.|.|..+
T Consensus 13 ~~~~-~dg--~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~-~c~v~i~~~ 71 (985)
T TIGR01372 13 LRFT-FDG--KSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTA-GVEEP-NALVTVGSG 71 (985)
T ss_pred EEEE-ECC--EEeecCCCCHHHHHHHhCCCeeecccCCCCCCCccccc-CccCC-CeEEEECCC
Confidence 4443 278 689999999999999999971 11113574 35586 999999544
No 60
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=84.69 E-value=1.8 Score=39.91 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=28.6
Q ss_pred EEEEecCCchHHHHHHHCCC-CCCCcCCCCC-----cccCCCccEEEEcC
Q 031532 57 RPIIGLAGQTLLKALTNSGL-IDPASHRLEE-----IDACSAECEVNIAQ 100 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~gi-i~~~~~~CgG-----~g~CGatC~V~V~~ 100 (158)
..|.+++|.|+|+++...|+ |+- .|-- .|.|- .|.|.|..
T Consensus 40 ~~v~v~pg~tvlqac~~~gv~ipr---fcyh~rlsvagncr-mclvevek 85 (708)
T KOG2282|consen 40 QSVMVEPGTTVLQACAKVGVDIPR---FCYHERLSVAGNCR-MCLVEVEK 85 (708)
T ss_pred eeEeeCCCcHHHHHHHHhCCCcch---hhhhhhhhhcccee-EEEEEecc
Confidence 57899999999999999999 433 3421 12475 77777754
No 61
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=77.45 E-value=5.3 Score=26.93 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.0
Q ss_pred EEECCCCCEEEEEecCCchHHHHHH
Q 031532 48 FAIDPDGQKRPIIGLAGQTLLKALT 72 (158)
Q Consensus 48 t~v~~~G~~~~v~~~~G~tLlea~~ 72 (158)
.+.-|||+...|.+++|+|+.|++.
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~ 27 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLA 27 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHH
Confidence 3445799999999999999999886
No 62
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=74.72 E-value=6.2 Score=26.28 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=20.3
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHH
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALT 72 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~ 72 (158)
..|.+ |+|+...|.+++|.|+.|++.
T Consensus 3 ~~v~L--P~~q~t~V~vrpg~ti~d~L~ 28 (71)
T PF02196_consen 3 CRVHL--PNGQRTVVQVRPGMTIRDALS 28 (71)
T ss_dssp EEEEE--TTTEEEEEEE-TTSBHHHHHH
T ss_pred EEEEC--CCCCEEEEEEcCCCCHHHHHH
Confidence 34444 789888899999999999886
No 63
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=73.71 E-value=3.3 Score=33.40 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=22.8
Q ss_pred hHHHHHHHCCC----CCCCcCCCCCcccCCCccEEEEc
Q 031532 66 TLLKALTNSGL----IDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 66 tLlea~~~~gi----i~~~~~~CgG~g~CGatC~V~V~ 99 (158)
.+.+.+.+.|+ .....+.|| .|.|+ .|.|...
T Consensus 194 ~~~~~l~~~Gv~~~~s~e~~m~Cg-~G~C~-~C~~~~~ 229 (248)
T cd06219 194 AVSELTRPYGIPTVVSLNPIMVDG-TGMCG-ACRVTVG 229 (248)
T ss_pred HHHHHHHHcCCCEEEEecccccCc-cceee-eEEEEeC
Confidence 46677778888 122336784 99998 9999863
No 64
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=73.22 E-value=2.8 Score=25.08 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=13.7
Q ss_pred CCCCCcccCCCccEEEEcCC
Q 031532 82 HRLEEIDACSAECEVNIAQE 101 (158)
Q Consensus 82 ~~CgG~g~CGatC~V~V~~g 101 (158)
+.| |.|.|+ .|.|.+..+
T Consensus 4 M~C-G~G~C~-~C~v~~~~~ 21 (40)
T PF10418_consen 4 MAC-GVGACG-GCVVPVKDG 21 (40)
T ss_dssp -SS-SSSSS--TTEEECSST
T ss_pred ccC-CCcEeC-CcEeeeecC
Confidence 468 599998 999998765
No 65
>smart00455 RBD Raf-like Ras-binding domain.
Probab=72.04 E-value=9 Score=25.46 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.4
Q ss_pred EECCCCCEEEEEecCCchHHHHHH
Q 031532 49 AIDPDGQKRPIIGLAGQTLLKALT 72 (158)
Q Consensus 49 ~v~~~G~~~~v~~~~G~tLlea~~ 72 (158)
+.-|+|+...|.+++|.||.|++.
T Consensus 4 v~LP~~~~~~V~vrpg~tl~e~L~ 27 (70)
T smart00455 4 VHLPDNQRTVVKVRPGKTVRDALA 27 (70)
T ss_pred EECCCCCEEEEEECCCCCHHHHHH
Confidence 334789989999999999999886
No 66
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=71.44 E-value=2.9 Score=33.32 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=23.2
Q ss_pred chHHHHHHHCCC-----CCCCcCCCCCcccCCCccEEEEc
Q 031532 65 QTLLKALTNSGL-----IDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 65 ~tLlea~~~~gi-----i~~~~~~CgG~g~CGatC~V~V~ 99 (158)
+.+.+++.+.|+ .+.. +.| |.|.|| .|.|.+.
T Consensus 180 ~~~~~~L~~~g~~~~i~~e~f-~~c-g~g~C~-~C~v~~~ 216 (233)
T cd06220 180 YKVLEILDERGVRAQFSLERY-MKC-GIGICG-SCCIDPT 216 (233)
T ss_pred HHHHHHHHhcCCcEEEEeccc-ccC-cCCCcC-ccEeccC
Confidence 367778888887 2222 567 599998 9999974
No 67
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=70.91 E-value=2.6 Score=34.99 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=25.7
Q ss_pred chHHHHHHHCCCC-------CCCcCCCCCcccCCCccEEEEcCC
Q 031532 65 QTLLKALTNSGLI-------DPASHRLEEIDACSAECEVNIAQE 101 (158)
Q Consensus 65 ~tLlea~~~~gii-------~~~~~~CgG~g~CGatC~V~V~~g 101 (158)
+.+.+.+.+.|+. ...-+.| |.|.|+ .|+|....|
T Consensus 225 ~~v~~~L~~~Gv~~~~i~~~l~~~m~c-g~g~c~-~c~~~~~~~ 266 (289)
T PRK08345 225 KFVFKELINRGYRPERIYVTLERRMRC-GIGKCG-HCIVGTSTS 266 (289)
T ss_pred HHHHHHHHHcCCCHHHEEEEehhcccc-cCcccC-CCccCCCCc
Confidence 4678888888871 1123789 599998 999997665
No 68
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=70.33 E-value=2.8 Score=33.79 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=23.0
Q ss_pred hHHHHHHHCCCC----CCCcCCCCCcccCCCccEEEEcCC
Q 031532 66 TLLKALTNSGLI----DPASHRLEEIDACSAECEVNIAQE 101 (158)
Q Consensus 66 tLlea~~~~gii----~~~~~~CgG~g~CGatC~V~V~~g 101 (158)
.+.+++.++|+. ....+.| |.|.|| +|.|.+..+
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~c-g~G~C~-~C~~~~~~~ 232 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKC-GIGACG-ACVCDTETG 232 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccC-cCcccC-cCCcccCCC
Confidence 566777788861 1122567 689998 999987554
No 69
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=69.00 E-value=5.5 Score=32.92 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=22.5
Q ss_pred hHHHHHHHCCC----CCCCcCCCCCcccCCCccEEEEc
Q 031532 66 TLLKALTNSGL----IDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 66 tLlea~~~~gi----i~~~~~~CgG~g~CGatC~V~V~ 99 (158)
.+.+.+.+.|+ ....-+.| |.|.|+ .|.|...
T Consensus 195 ~v~~~l~~~gv~~~~sle~~M~C-G~G~C~-~C~v~~~ 230 (281)
T PRK06222 195 FVAELTKPYGIKTIVSLNPIMVD-GTGMCG-ACRVTVG 230 (281)
T ss_pred HHHHHHHhcCCCEEEECcccccC-cccccc-eeEEEEC
Confidence 35677778887 12233789 699998 9999754
No 70
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=65.47 E-value=12 Score=37.46 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=32.6
Q ss_pred CCCEEEE-EecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcC
Q 031532 53 DGQKRPI-IGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 53 ~G~~~~v-~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
+|++.++ .+.+..||+.-++++==+-.-...|+ .|.|| .|-|.|..
T Consensus 8 NG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~-EGGCG-aCtv~ls~ 54 (1257)
T KOG0430|consen 8 NGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCG-EGGCG-ACTVVLSK 54 (1257)
T ss_pred CCEEeeEecCCcchhHHHHHHHhcCCcceeeccC-CCCcc-ceEEEEec
Confidence 6766555 35778899999886522233345795 68999 99999955
No 71
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=65.01 E-value=15 Score=24.41 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=23.5
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHH
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
|+.|+|.+..|....+++.+..|+.+.
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~L 27 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDL 27 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHH
Confidence 678999988898888999999988774
No 72
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=62.86 E-value=7.5 Score=31.32 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=23.4
Q ss_pred hHHHHHHHCCCC----CCCcCCCCCcccCCCccEEEEcC
Q 031532 66 TLLKALTNSGLI----DPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 66 tLlea~~~~gii----~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
.+.+.+++.|+. ....+.| |+|.|| .|.+...+
T Consensus 194 ~~~~~L~~~Gv~~~~~~~~~~~~-~~g~c~-~c~~~~~~ 230 (246)
T cd06218 194 AVAELAAERGVPCQVSLEERMAC-GIGACL-GCVVKTKD 230 (246)
T ss_pred HHHHHHHhcCCCEEEEecccccC-ccceec-ccEEEeec
Confidence 567777888881 1122667 579998 99999865
No 73
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=61.30 E-value=22 Score=31.77 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=35.7
Q ss_pred ceEEEEECCCCCEEEE-EecCCchHHHHHH-HCCCCCCCcCCCCCcccCCCccEEEEc
Q 031532 44 IVHLFAIDPDGQKRPI-IGLAGQTLLKALT-NSGLIDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v-~~~~G~tLlea~~-~~gii~~~~~~CgG~g~CGatC~V~V~ 99 (158)
|-.|.|+- +|+.+.+ .+.+..|||+-++ +.++- .-.-.|. .|-|| -|-|.|-
T Consensus 6 ~~~irf~l-N~~~~~l~~v~P~~TlLd~LR~d~~lt-GtKEGCA-EGDCG-ACTVlVg 59 (493)
T COG4630 6 RNTIRFLL-NGETRVLSDVPPTTTLLDYLRLDRRLT-GTKEGCA-EGDCG-ACTVLVG 59 (493)
T ss_pred cceeEEEe-cCceEEeecCCcchHHHHHHHHhcccc-ccccccc-CCCcC-ceEEEEE
Confidence 45566663 5654444 6788999999998 56662 2223585 67898 9999873
No 74
>PLN02906 xanthine dehydrogenase
Probab=58.48 E-value=12 Score=37.98 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=26.0
Q ss_pred CchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcC
Q 031532 64 GQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 64 G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
..+|++.+++.|+- .....|+ .|.|| .|-|.|..
T Consensus 1 ~~~ll~~LR~~~l~-g~k~gC~-~g~CG-aCtv~~~~ 34 (1319)
T PLN02906 1 HQTLLEYLRDLGLT-GTKLGCG-EGGCG-ACTVMVSH 34 (1319)
T ss_pred CCcHHHHHHhCCCC-CCCCCcC-CCCCC-CeEEEECC
Confidence 36899999986662 3335795 79999 99999963
No 75
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=57.06 E-value=12 Score=24.67 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=16.0
Q ss_pred ECCCCCEEEEEecCCchHHHHHHHC
Q 031532 50 IDPDGQKRPIIGLAGQTLLKALTNS 74 (158)
Q Consensus 50 v~~~G~~~~v~~~~G~tLlea~~~~ 74 (158)
+.+++.+.+|.+.++.+|.+++.++
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~ea 26 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEA 26 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHH
T ss_pred CccCCcEEEEEECCCCCHHHHHHHH
Confidence 4578888999999999988877643
No 76
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=56.60 E-value=16 Score=24.84 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=27.9
Q ss_pred CCCCCEEEEEecCCchHHHHHH----HCCCCCCCcCCCCCcccCCCccEEEEcCC
Q 031532 51 DPDGQKRPIIGLAGQTLLKALT----NSGLIDPASHRLEEIDACSAECEVNIAQE 101 (158)
Q Consensus 51 ~~~G~~~~v~~~~G~tLlea~~----~~gii~~~~~~CgG~g~CGatC~V~V~~g 101 (158)
-|||..-.|.+.+|+||.|++. ..|+. . +.|-|+...+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~------------~-~~~~vf~~g~ 47 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGIN------------Y-AAVDLFLVGG 47 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCC------------h-hHEEEEEecC
Confidence 3789988899999999888775 44551 2 4677887744
No 77
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=55.34 E-value=21 Score=24.37 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCchHHHHHHHC
Q 031532 52 PDGQKRPIIGLAGQTLLKALTNS 74 (158)
Q Consensus 52 ~~G~~~~v~~~~G~tLlea~~~~ 74 (158)
|+.++..|++.+|.+|.|++.+.
T Consensus 7 PnqQrT~V~vrpG~tl~daL~Ka 29 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAKA 29 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHHH
Confidence 66677779999999999988643
No 78
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=54.74 E-value=7.5 Score=31.46 Aligned_cols=31 Identities=16% Similarity=0.435 Sum_probs=21.4
Q ss_pred chHHHHHHHCCCC------C-CCcCCCCCcccCCCccEEE
Q 031532 65 QTLLKALTNSGLI------D-PASHRLEEIDACSAECEVN 97 (158)
Q Consensus 65 ~tLlea~~~~gii------~-~~~~~CgG~g~CGatC~V~ 97 (158)
+.+.+++.+.|+. + ...+.| |.|.|| .|+|.
T Consensus 203 ~~~~~~L~~~Gv~~~~i~~~~~~~~~~-~~g~c~-~c~~~ 240 (253)
T cd06221 203 RFVAKELLKLGVPEEQIWVSLERRMKC-GVGKCG-HCQIG 240 (253)
T ss_pred HHHHHHHHHcCCCHHHEEEehhhcccc-CCcccc-CcccC
Confidence 4677888888871 0 111445 699998 99987
No 79
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=53.39 E-value=26 Score=22.93 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=25.1
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHHHCCC
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi 76 (158)
+|++|++... +...+++...|.|+.+.+..-++
T Consensus 3 ~mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l~~ 35 (70)
T PRK08364 3 LMIRVKVIGR-GIEKEIEWRKGMKVADILRAVGF 35 (70)
T ss_pred eEEEEEEecc-ccceEEEcCCCCcHHHHHHHcCC
Confidence 4777887432 22457888999999999998888
No 80
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=48.63 E-value=27 Score=22.23 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=18.0
Q ss_pred CCCCCEEEEEecCCchHHHHHHHCC
Q 031532 51 DPDGQKRPIIGLAGQTLLKALTNSG 75 (158)
Q Consensus 51 ~~~G~~~~v~~~~G~tLlea~~~~g 75 (158)
.++|. ..+.+.|.|.+|+|..-+
T Consensus 5 lpdG~--~~~~~~g~T~~d~A~~I~ 27 (60)
T PF02824_consen 5 LPDGS--IKELPEGSTVLDVAYSIH 27 (60)
T ss_dssp ETTSC--EEEEETTBBHHHHHHHHS
T ss_pred CCCCC--eeeCCCCCCHHHHHHHHC
Confidence 38896 456899999999998544
No 81
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=46.32 E-value=23 Score=24.71 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=23.6
Q ss_pred eEEEEECCCCCE-EEEEecCCchHHHHHHHCCC
Q 031532 45 VHLFAIDPDGQK-RPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 45 ~~Vt~v~~~G~~-~~v~~~~G~tLlea~~~~gi 76 (158)
+.|.+-.++.+. .++++.+|.|+.+|+...|+
T Consensus 3 VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi 35 (84)
T PF03658_consen 3 VEVAYALPERQVILTLEVPEGTTVAQAIEASGI 35 (84)
T ss_dssp EEEEEEETTCEEEEEEEEETT-BHHHHHHHHTH
T ss_pred EEEEEECCCeEEEEEEECCCcCcHHHHHHHcCc
Confidence 456665554432 56889999999999999999
No 82
>PRK05802 hypothetical protein; Provisional
Probab=45.31 E-value=20 Score=30.47 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=21.0
Q ss_pred hHHHHHHH--CCCC----CCCcCCCCCcccCCCccEEEEc
Q 031532 66 TLLKALTN--SGLI----DPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 66 tLlea~~~--~gii----~~~~~~CgG~g~CGatC~V~V~ 99 (158)
.+.+.+.+ .+|. ...-+.| |.|.|| .|.|...
T Consensus 268 ~v~~~l~~~~~~i~~~~Sle~~M~C-G~G~Cg-~C~v~~~ 305 (320)
T PRK05802 268 KIIEYLDKLNEKIKLSCSNNAKMCC-GEGICG-ACTVRYG 305 (320)
T ss_pred HHHHHHhhhcCCceEEEeCCCeeeC-cCccCC-eeEEEEC
Confidence 35555655 6761 1123678 699998 9999973
No 83
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=44.80 E-value=13 Score=30.30 Aligned_cols=30 Identities=13% Similarity=0.442 Sum_probs=19.4
Q ss_pred hHHHHHHHCCCCC-------CCcCCCCCcccCCCccEEE
Q 031532 66 TLLKALTNSGLID-------PASHRLEEIDACSAECEVN 97 (158)
Q Consensus 66 tLlea~~~~gii~-------~~~~~CgG~g~CGatC~V~ 97 (158)
.+.+.+.+.|+.. ..-+.| |.|.|| .|+|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~m~c-g~g~c~-~c~~~ 240 (261)
T TIGR02911 204 FTVQELLKKGIKEENIWVSYERKMCC-GVGKCG-HCKID 240 (261)
T ss_pred HHHHHHHHcCCCHHHEEEEeccceec-cCcCCC-CcccC
Confidence 4566677888711 111456 699998 99765
No 84
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=44.41 E-value=13 Score=29.57 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=19.8
Q ss_pred hHHHHHHHCC--C----CCCCcCCCCCcccCCCccEEEEc
Q 031532 66 TLLKALTNSG--L----IDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 66 tLlea~~~~g--i----i~~~~~~CgG~g~CGatC~V~V~ 99 (158)
.+.+.+.+.| + .....+.| |.|.|| .|.|...
T Consensus 192 ~~~~~l~~~g~~~~~~~s~~~~m~C-g~G~C~-~C~~~~~ 229 (243)
T cd06192 192 AVVEALDEWLQLIKASVSNNSPMCC-GIGICG-ACTIETK 229 (243)
T ss_pred HHHHHHHhhcCCceEEEECCccccC-cccccc-ceEEEeC
Confidence 4555555553 2 11223678 589998 9999864
No 85
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=44.26 E-value=21 Score=33.64 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=21.7
Q ss_pred hHHHHHHHCCCC----CCCcCCCCCcccCCCccEEEE
Q 031532 66 TLLKALTNSGLI----DPASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 66 tLlea~~~~gii----~~~~~~CgG~g~CGatC~V~V 98 (158)
.+.+.+.+.|+. ...-+.| |.|.|+ .|.|.+
T Consensus 195 ~v~~~l~~~gv~~~~Sle~~M~C-G~G~C~-~C~v~~ 229 (752)
T PRK12778 195 FVCLLTKKYGIPTIVSLNTIMVD-GTGMCG-ACRVTV 229 (752)
T ss_pred HHHHHHHHcCCCEEEeCcccccC-cccccC-cceeEe
Confidence 456677788871 1223778 699998 999964
No 86
>PRK06437 hypothetical protein; Provisional
Probab=44.06 E-value=48 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=20.6
Q ss_pred CCCEEEEEecCCchHHHHHHHCCC
Q 031532 53 DGQKRPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 53 ~G~~~~v~~~~G~tLlea~~~~gi 76 (158)
.+..++++..++.|+.+.+.+.|+
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~Lgi 32 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDLGL 32 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHcCC
Confidence 445578899999999999999998
No 87
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=40.31 E-value=26 Score=34.54 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=21.9
Q ss_pred hHHHHHHHCCC----CCCCcCCCCCcccCCCccEEEEc
Q 031532 66 TLLKALTNSGL----IDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 66 tLlea~~~~gi----i~~~~~~CgG~g~CGatC~V~V~ 99 (158)
.+.+++.+.|| ....-+.| |.|.|| .|+|.+.
T Consensus 195 av~~~~~~~gi~~~vSle~~M~c-G~G~Cg-~C~v~~~ 230 (1006)
T PRK12775 195 ACVETTRPFGVKTMVSLNAIMVD-GTGMCG-SCRVTVG 230 (1006)
T ss_pred HHHHHHHHCCCcEEECChhheeC-ccceeC-CCEeeeC
Confidence 34566677887 12223678 699998 9999764
No 88
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=37.22 E-value=66 Score=20.32 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=18.6
Q ss_pred CCCEEEEEecCCchHHHHHHHCCC
Q 031532 53 DGQKRPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 53 ~G~~~~v~~~~G~tLlea~~~~gi 76 (158)
+| +.+++.+|.||.+++...++
T Consensus 6 NG--~~~~~~~~~tl~~lL~~l~~ 27 (66)
T PRK05659 6 NG--EPRELPDGESVAALLAREGL 27 (66)
T ss_pred CC--eEEEcCCCCCHHHHHHhcCC
Confidence 56 45678889999999999988
No 89
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=36.50 E-value=56 Score=22.49 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=21.5
Q ss_pred CCCCCEEEEEecCCchHHHHHH----HCCC
Q 031532 51 DPDGQKRPIIGLAGQTLLKALT----NSGL 76 (158)
Q Consensus 51 ~~~G~~~~v~~~~G~tLlea~~----~~gi 76 (158)
-+||....+.+++|.|++|++. ++|+
T Consensus 6 lPn~~~~~v~vrp~~tv~dvLe~aCk~~~l 35 (77)
T cd01818 6 LPDNQPVLTYLRPGMSVEDFLESACKRKQL 35 (77)
T ss_pred CCCCceEEEEECCCCCHHHHHHHHHHhcCC
Confidence 3789999999999999999875 4555
No 90
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=34.13 E-value=86 Score=19.53 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=16.5
Q ss_pred EEEEecCCchHHHHHHHCCC
Q 031532 57 RPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~gi 76 (158)
-.+++..|.||.|++..+|=
T Consensus 12 G~~~~~~g~tl~~~i~~AGG 31 (59)
T PF10531_consen 12 GTYELPPGTTLSDAIAQAGG 31 (59)
T ss_dssp EEEEEETT-BHHHHHHCTTS
T ss_pred EEEEECCCCcHHHHHHHhCC
Confidence 46888899999999998876
No 91
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=33.99 E-value=36 Score=33.36 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=22.2
Q ss_pred hHHHHHHHCCCCC----CCcCCCCCcccCCCccEEEE
Q 031532 66 TLLKALTNSGLID----PASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 66 tLlea~~~~gii~----~~~~~CgG~g~CGatC~V~V 98 (158)
.+.+.+.+.|+.. ..-+.| |.|.|+ .|.|.+
T Consensus 861 av~~~l~~~Gv~~~vSlE~~M~C-G~G~C~-~C~v~~ 895 (944)
T PRK12779 861 AVSDLTKPYGVKTVASLNSIMVD-ATGMCG-ACMVPV 895 (944)
T ss_pred HHHHHHHHcCCCeEEeecccccC-CCeeeC-eeeeee
Confidence 4566677888821 233789 699998 999975
No 92
>PRK01777 hypothetical protein; Validated
Probab=33.31 E-value=1.1e+02 Score=21.49 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEecCCchHHHHHHHCCCC
Q 031532 57 RPIIGLAGQTLLKALTNSGLI 77 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~gii 77 (158)
..+++.+|.|+-+++...||.
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~ 39 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLL 39 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCC
Confidence 567889999999999999993
No 93
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=30.91 E-value=99 Score=19.35 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=20.9
Q ss_pred EEEEECCCCCEEEEEecCCchHHHHHH
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKALT 72 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea~~ 72 (158)
+|++...+|...++++.+..|+-+.-.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~ 28 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKE 28 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 466666788888999999998877543
No 94
>PRK07440 hypothetical protein; Provisional
Probab=29.76 E-value=1.2e+02 Score=19.80 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=22.0
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCC
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi 76 (158)
+++|++ +| +.+++.++.||.+.+.+.++
T Consensus 4 ~m~i~v---NG--~~~~~~~~~tl~~lL~~l~~ 31 (70)
T PRK07440 4 PITLQV---NG--ETRTCSSGTSLPDLLQQLGF 31 (70)
T ss_pred ceEEEE---CC--EEEEcCCCCCHHHHHHHcCC
Confidence 456665 46 45778889999999998888
No 95
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=29.56 E-value=55 Score=18.62 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=12.2
Q ss_pred EecCCchHHHHHHHCCC
Q 031532 60 IGLAGQTLLKALTNSGL 76 (158)
Q Consensus 60 ~~~~G~tLlea~~~~gi 76 (158)
.+.+|+|+..++.+.|+
T Consensus 2 ~V~~gDtl~~IA~~~~~ 18 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGI 18 (44)
T ss_dssp EE-TT--HHHHHHHTTS
T ss_pred EECcCCcHHHHHhhhhh
Confidence 46789999999999988
No 96
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=28.78 E-value=1e+02 Score=20.34 Aligned_cols=27 Identities=11% Similarity=-0.143 Sum_probs=21.7
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
++|+|....|....+++.+..|+-+.=
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK 29 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELK 29 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHH
Confidence 368888888988888899999988743
No 97
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=28.78 E-value=1.2e+02 Score=19.26 Aligned_cols=26 Identities=8% Similarity=-0.105 Sum_probs=20.8
Q ss_pred EEEEECCCCCEEEEEecCCchHHHHH
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
+|+|.+.+|....+++.+..|+-+.=
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIK 27 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHH
Confidence 46777778988889999999887744
No 98
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=26.79 E-value=35 Score=27.77 Aligned_cols=30 Identities=10% Similarity=0.377 Sum_probs=20.3
Q ss_pred hHHHHHHHCCCCC-------CCcCCCCCcccCCCccEEE
Q 031532 66 TLLKALTNSGLID-------PASHRLEEIDACSAECEVN 97 (158)
Q Consensus 66 tLlea~~~~gii~-------~~~~~CgG~g~CGatC~V~ 97 (158)
.+.+.+++.|+.. ..-+.| |.|.|| .|+|.
T Consensus 206 ~~~~~L~~~Gv~~~~i~~~~~~~m~c-g~g~c~-~c~~~ 242 (263)
T PRK08221 206 FTVLEFLKRGIKEENIWVSYERKMCC-GVGKCG-HCKID 242 (263)
T ss_pred HHHHHHHHcCCCHHHEEEEecceeEc-cCcccC-CcccC
Confidence 4667777888711 122556 689998 99876
No 99
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=26.37 E-value=1.4e+02 Score=18.84 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=21.0
Q ss_pred EEEEECCCCCEEEEEecCCchHHHHH
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
+|+|...+|+...+++.+..|+.+.=
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK 27 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVK 27 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHH
Confidence 47777778988889999999987753
No 100
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=25.72 E-value=74 Score=16.85 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.3
Q ss_pred EEEecCCchHHHHHHHCCC
Q 031532 58 PIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 58 ~v~~~~G~tLlea~~~~gi 76 (158)
...+..|+|+..++.+.++
T Consensus 2 ~~~v~~gdt~~~ia~~~~~ 20 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGI 20 (46)
T ss_pred EEEECCCCCHHHHHHHHCc
Confidence 3567788999999888877
No 101
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=25.69 E-value=1.5e+02 Score=19.55 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=21.2
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHH
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
.+|+|....|....+++.+..|+-+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~L 27 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGL 27 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHH
Confidence 35777777898889999999988774
No 102
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=25.14 E-value=47 Score=27.11 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=16.1
Q ss_pred chHHHHHHHCCCCCCCcCCCCCcccCCCcc
Q 031532 65 QTLLKALTNSGLIDPASHRLEEIDACSAEC 94 (158)
Q Consensus 65 ~tLlea~~~~gii~~~~~~CgG~g~CGatC 94 (158)
+.+++.+.+.++..+...+|| .||.+|
T Consensus 134 d~iad~I~e~~~~lp~~lnCg---~CG~~C 160 (229)
T PRK14494 134 DELADLVLERAFVLPYNLNCG---HCGFNC 160 (229)
T ss_pred HHHHHHHHHhccCCCCCCCCC---ccCcCH
Confidence 466777788777444345674 465344
No 103
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=24.08 E-value=1.6e+02 Score=18.86 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=19.8
Q ss_pred EEEEECCCCCEEEEEecCCchHHHH
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
+|++...+|....+++.+..|+.+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~l 26 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAEL 26 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4566667888888999999988775
No 104
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=23.91 E-value=2e+02 Score=20.05 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=21.6
Q ss_pred EEEECCCCCEEEEEecCCchHHHHHH
Q 031532 47 LFAIDPDGQKRPIIGLAGQTLLKALT 72 (158)
Q Consensus 47 Vt~v~~~G~~~~v~~~~G~tLlea~~ 72 (158)
|.|...||..+.+.+.+..|..+++.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~ 30 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQ 30 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHH
Confidence 44445789999999999999999886
No 105
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=23.71 E-value=53 Score=18.21 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.1
Q ss_pred cCCchHHHHHHHCCC
Q 031532 62 LAGQTLLKALTNSGL 76 (158)
Q Consensus 62 ~~G~tLlea~~~~gi 76 (158)
.+|+||.+++.++|+
T Consensus 2 ~~gdtl~~IA~~~~~ 16 (44)
T TIGR02899 2 QKGDTLWKIAKKYGV 16 (44)
T ss_pred CCCCCHHHHHHHHCc
Confidence 568888888888877
No 106
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=23.59 E-value=1.8e+02 Score=19.18 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=18.3
Q ss_pred EEEEecCCchHHHHHHHCCC
Q 031532 57 RPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~gi 76 (158)
+.+++.++.|+.+.+.+.|+
T Consensus 10 ~~~e~~~~~tv~dLL~~l~~ 29 (68)
T COG2104 10 KEVEIAEGTTVADLLAQLGL 29 (68)
T ss_pred EEEEcCCCCcHHHHHHHhCC
Confidence 57888889999999999999
No 107
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=23.50 E-value=53 Score=24.52 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=21.8
Q ss_pred cCCchHHHHHHHCCCCCCCcCCCCCcc--cCCCccE
Q 031532 62 LAGQTLLKALTNSGLIDPASHRLEEID--ACSAECE 95 (158)
Q Consensus 62 ~~G~tLlea~~~~gii~~~~~~CgG~g--~CGatC~ 95 (158)
..-.-|++.+.+.|++....++|.-.. -|| +|.
T Consensus 124 ~~K~ei~~~~~~~g~~~~~s~sC~~~~~~~CG-~C~ 158 (169)
T cd01995 124 LSKAEIVRLGGELGVPLELTWSCYNGGEKHCG-ECD 158 (169)
T ss_pred CCHHHHHHHHhHcCCChhheeeccCCCCCCCC-CCH
Confidence 344578888899999444567786322 387 774
No 108
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=23.10 E-value=35 Score=22.08 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=14.9
Q ss_pred chHHHHHHHCCCCCC--CcCCCCCcccCCCccE
Q 031532 65 QTLLKALTNSGLIDP--ASHRLEEIDACSAECE 95 (158)
Q Consensus 65 ~tLlea~~~~gii~~--~~~~CgG~g~CGatC~ 95 (158)
+.+|+.+.+.|.|.- ....| .+.|+ .|.
T Consensus 32 e~mL~~l~~kG~I~~~~~~~~~--~~~C~-~C~ 61 (69)
T PF09012_consen 32 EAMLEQLIRKGYIRKVDMSSCC--GGSCS-SCG 61 (69)
T ss_dssp HHHHHHHHCCTSCEEEEEE--S--SSSSS-S-S
T ss_pred HHHHHHHHHCCcEEEecCCCCC--CCCCC-CCC
Confidence 357788888887321 11233 35676 775
No 109
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=22.54 E-value=1.6e+02 Score=18.30 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=17.1
Q ss_pred EEEEecCCchHHHHHHHCCC
Q 031532 57 RPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~gi 76 (158)
..+++.+|.||.+++...++
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~ 27 (65)
T PRK06944 8 QTLSLPDGATVADALAAYGA 27 (65)
T ss_pred EEEECCCCCcHHHHHHhhCC
Confidence 46778889999999998887
No 110
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=22.26 E-value=2e+02 Score=19.68 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCC
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi 76 (158)
|.+|++ +|+ ..++.++.||.+.+...++
T Consensus 18 ~m~I~V---NG~--~~~~~~~~tl~~LL~~l~~ 45 (84)
T PRK06083 18 LITISI---NDQ--SIQVDISSSLAQIIAQLSL 45 (84)
T ss_pred eEEEEE---CCe--EEEcCCCCcHHHHHHHcCC
Confidence 667776 574 5667889999999998877
No 111
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=22.03 E-value=2.6e+02 Score=18.78 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=23.9
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHH
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALT 72 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~ 72 (158)
.+.|.+.+.+|....+.+....+|..+..
T Consensus 11 ~i~I~v~~~~g~~~~~~v~~~~~l~~l~~ 39 (87)
T cd01763 11 HINLKVKGQDGNEVFFKIKRSTPLKKLME 39 (87)
T ss_pred eEEEEEECCCCCEEEEEEcCCCHHHHHHH
Confidence 56788888899999999999998877664
No 112
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=21.67 E-value=1.8e+02 Score=18.63 Aligned_cols=26 Identities=8% Similarity=-0.050 Sum_probs=20.3
Q ss_pred EEEEECCCCCEEEEEecCCchHHHHH
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
+|+|...+|....+++.+..|+-++=
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK 27 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLK 27 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 46666678988889999999888743
No 113
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=21.55 E-value=1.9e+02 Score=16.98 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEECCCCCEEEEEecCCchHHHHHHHCCC
Q 031532 47 LFAIDPDGQKRPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 47 Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi 76 (158)
|++. -+|+.+++. -...|+-+++.++||
T Consensus 2 Vtv~-~dG~~~~v~-T~a~tV~~~L~~~gI 29 (43)
T PF03990_consen 2 VTVT-VDGKEKTVY-TTASTVGDALKELGI 29 (43)
T ss_pred EEEE-ECCEEEEEE-eCCCCHHHHHHhCCC
Confidence 4444 278766555 456899999999999
No 114
>PTZ00044 ubiquitin; Provisional
Probab=21.48 E-value=1.9e+02 Score=18.39 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=20.1
Q ss_pred EEEEECCCCCEEEEEecCCchHHHH
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
+|.|.+.+|....+++.+..|+-++
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~l 26 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQV 26 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 3566667898889999999998774
No 115
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=21.13 E-value=2.9e+02 Score=22.98 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=33.5
Q ss_pred CCcceEEEEECCC--CCE-----EEEEe-cCCchHHHHHHHCCC-CCC---CcCCCCCcccCCCccEEEEcC
Q 031532 41 ADRIVHLFAIDPD--GQK-----RPIIG-LAGQTLLKALTNSGL-IDP---ASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 41 ~~~m~~Vt~v~~~--G~~-----~~v~~-~~G~tLlea~~~~gi-i~~---~~~~CgG~g~CGatC~V~V~~ 100 (158)
.-|.+.|--.++| |.+ .+|+. +=|--+||++..-+= .|+ +--+|. .|.|| +|-..|-.
T Consensus 45 rlKtFeIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCR-EGICG-SCAMNI~G 114 (288)
T KOG3049|consen 45 RLKTFEIYRWNPDNPGDKPHLQTYEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCR-EGICG-SCAMNING 114 (288)
T ss_pred ccceEEEEecCCCCCCCCccceeeeecHHhcchHHHHHHHHhhcccCCceehhhhhh-ccccc-cceeccCC
Confidence 4455566666664 321 22333 237789999974332 222 224686 68898 99888743
Done!