Query 031532
Match_columns 158
No_of_seqs 130 out of 1043
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 01:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hui_A Ferredoxin; cytochrome 100.0 1.8E-31 6.3E-36 198.1 10.5 114 35-153 12-125 (126)
2 2bt6_A Adrenodoxin 1; rutheniu 100.0 5.8E-30 2E-34 184.0 9.7 104 41-150 3-108 (108)
3 3lxf_A Ferredoxin; iron, iron- 100.0 1.4E-29 4.7E-34 181.7 11.6 104 45-153 1-104 (104)
4 2y5c_A Adrenodoxin-like protei 100.0 2.2E-29 7.6E-34 181.4 10.7 107 41-153 2-108 (109)
5 3n9z_C Adrenodoxin; cytochrome 100.0 5.3E-31 1.8E-35 194.9 1.1 107 41-153 2-110 (123)
6 1xlq_A Putidaredoxin, PDX; [2F 99.9 2.2E-27 7.6E-32 169.8 12.1 104 45-153 1-105 (106)
7 1uwm_A Ferredoxin VI, FDVI; el 99.9 3.2E-27 1.1E-31 168.9 10.0 104 45-153 1-105 (106)
8 1b9r_A Protein (terpredoxin); 99.9 2E-27 6.7E-32 169.8 5.6 103 45-152 1-104 (105)
9 2wlb_A ETP1-FD, electron trans 99.9 2E-26 6.8E-31 164.1 9.7 102 43-150 2-103 (103)
10 3ah7_A [2Fe-2S]ferredoxin; [2F 99.9 3.5E-24 1.2E-28 154.9 10.2 100 44-153 1-104 (113)
11 1l5p_A Ferredoxin; [2Fe-2S] cl 99.9 8.3E-23 2.9E-27 143.2 9.3 92 46-149 2-93 (93)
12 1i7h_A Ferredoxin; 2Fe-2S,elec 99.9 5.5E-22 1.9E-26 143.0 10.1 100 44-153 1-104 (111)
13 1jq4_A Methane monooxygenase c 99.8 1.1E-20 3.9E-25 133.0 1.5 95 43-152 3-97 (98)
14 1czp_A Ferredoxin I; [2Fe-2S] 99.8 2.7E-19 9.2E-24 126.1 6.2 93 44-153 2-95 (98)
15 1frr_A Ferredoxin I; electron 99.8 4.1E-19 1.4E-23 124.0 5.4 92 44-153 1-92 (95)
16 1a70_A Ferredoxin; iron-sulfur 99.8 2.2E-19 7.6E-24 126.4 3.3 92 44-153 2-93 (97)
17 1awd_A Ferredoxin; electron tr 99.7 4E-19 1.4E-23 124.3 3.7 90 46-153 2-91 (94)
18 1frd_A Heterocyst [2Fe-2S] fer 99.7 1.1E-18 3.7E-23 122.7 5.5 92 44-152 2-94 (98)
19 1iue_A Ferredoxin; electron tr 99.7 1.2E-18 3.9E-23 122.9 5.3 91 44-152 2-92 (98)
20 1wri_A Ferredoxin II, ferredox 99.7 7.8E-19 2.7E-23 122.7 3.0 91 44-153 1-91 (93)
21 1krh_A Benzoate 1,2-dioxygenas 99.7 3.6E-18 1.2E-22 142.1 6.0 97 43-152 2-98 (338)
22 1doi_A 2Fe-2S ferredoxin; halo 99.6 1.6E-16 5.4E-21 117.8 5.4 100 34-150 17-116 (128)
23 3zyy_X Iron-sulfur cluster bin 99.6 2E-16 6.9E-21 143.1 5.2 92 43-153 2-93 (631)
24 2pia_A Phthalate dioxygenase r 99.4 5E-13 1.7E-17 110.7 9.9 81 42-141 235-315 (321)
25 3i9v_3 NADH-quinone oxidoreduc 98.2 1.9E-06 6.6E-11 79.4 7.4 86 44-150 1-96 (783)
26 3c8y_A Iron hydrogenase 1; dit 98.0 1.7E-05 5.8E-10 70.9 8.4 70 44-149 1-74 (574)
27 1kf6_B Fumarate reductase iron 98.0 1.4E-05 4.9E-10 63.5 6.8 63 56-148 25-91 (243)
28 1t3q_A Quinoline 2-oxidoreduct 97.9 2.4E-05 8.3E-10 59.7 7.3 43 53-98 17-60 (168)
29 1ffv_A CUTS, iron-sulfur prote 97.7 7.7E-05 2.6E-09 57.0 7.0 50 44-99 5-55 (163)
30 3hrd_D Nicotinate dehydrogenas 97.7 8.1E-05 2.8E-09 56.7 7.0 49 47-99 6-55 (160)
31 1n62_A Carbon monoxide dehydro 97.7 8.6E-05 2.9E-09 56.8 7.0 44 53-99 11-55 (166)
32 1rm6_C 4-hydroxybenzoyl-COA re 97.6 0.00012 4.1E-09 55.7 6.7 43 53-98 10-53 (161)
33 2bs2_B Quinol-fumarate reducta 96.9 0.0013 4.5E-08 52.0 5.6 43 56-101 25-71 (241)
34 2h88_B Succinate dehydrogenase 96.8 0.0017 6E-08 51.8 5.3 56 41-98 8-77 (252)
35 3nvw_A Xanthine dehydrogenase/ 96.5 0.0034 1.2E-07 47.9 5.1 51 44-100 4-56 (164)
36 2w3s_A Xanthine dehydrogenase; 96.4 0.0052 1.8E-07 53.6 6.1 44 53-99 8-52 (462)
37 2wdq_B Succinate dehydrogenase 96.2 0.0058 2E-07 48.1 5.3 40 57-98 23-67 (238)
38 3vr8_B Iron-sulfur subunit of 96.2 0.0063 2.1E-07 50.0 5.4 42 56-99 56-102 (282)
39 1vlb_A Aldehyde oxidoreductase 96.2 0.0091 3.1E-07 56.1 6.9 52 44-99 1-53 (907)
40 1dgj_A Aldehyde oxidoreductase 96.0 0.0081 2.8E-07 56.4 5.8 51 45-99 2-53 (907)
41 1y56_A Hypothetical protein PH 92.6 0.16 5.6E-06 43.6 5.6 49 44-99 15-67 (493)
42 3unc_A Xanthine dehydrogenase/ 91.1 0.3 1E-05 47.7 6.0 44 53-99 11-56 (1332)
43 1uh6_A Ubiquitin-like 5; beta- 89.6 0.8 2.7E-05 31.8 5.6 33 38-70 22-54 (100)
44 3plu_A Ubiquitin-like modifier 86.2 1 3.5E-05 31.0 4.4 35 36-70 13-47 (93)
45 3u7z_A Putative metal binding 84.2 1.9 6.5E-05 30.0 5.1 36 41-77 5-42 (101)
46 2al3_A TUG long isoform; TUG U 83.3 1.1 3.6E-05 30.8 3.4 31 46-76 11-45 (90)
47 2gag_A Heterotetrameric sarcos 81.3 2.7 9.4E-05 39.3 6.5 52 43-99 19-79 (965)
48 3zyv_A AOH1; oxidoreductase, m 79.6 2 6.9E-05 41.9 5.1 50 47-100 10-61 (1335)
49 2l05_A Serine/threonine-protei 78.8 4 0.00014 28.2 5.1 23 52-74 25-47 (95)
50 3kdv_A DDRB, DNA damage respon 78.1 2.2 7.4E-05 32.3 3.8 33 44-76 7-39 (184)
51 1wxm_A A-RAF proto-oncogene se 77.2 2.9 0.0001 28.4 3.9 29 43-73 8-36 (86)
52 3ny5_A Serine/threonine-protei 73.5 3.8 0.00013 28.3 3.8 34 38-73 9-42 (96)
53 3v6c_B Ubiquitin; structural g 72.7 7.5 0.00026 25.3 5.1 30 42-71 15-44 (91)
54 1wx7_A Ubiquilin 3; ubiquitin- 65.8 12 0.00042 25.1 5.2 36 35-71 8-43 (106)
55 1wgh_A Ubiquitin-like 3, HCG-1 65.4 18 0.0006 25.4 6.0 40 30-70 3-42 (116)
56 2gow_A HCG-1 protein, ubiquiti 65.1 13 0.00043 26.5 5.3 32 39-70 12-43 (125)
57 4hcn_B Polyubiquitin, ubiquiti 64.4 6.9 0.00024 26.0 3.6 36 36-71 14-49 (98)
58 1c1y_B Proto-onkogene serine/t 60.1 9.5 0.00032 25.3 3.5 23 52-74 9-31 (77)
59 1rrb_A RAF-1 RBD, RAF proto-on 59.8 12 0.00041 26.3 4.2 28 47-74 21-48 (107)
60 1wx8_A Riken cDNA 4931431F19; 56.4 31 0.0011 22.3 5.8 28 42-70 15-42 (96)
61 3dbh_I NEDD8; cell cycle, acti 55.3 31 0.001 21.7 5.5 31 41-71 9-39 (88)
62 1v86_A DNA segment, CHR 7, way 52.9 28 0.00096 22.9 5.1 31 40-71 13-43 (95)
63 3u30_A Ubiquitin, linear DI-ub 49.3 15 0.00052 26.7 3.5 34 37-70 13-46 (172)
64 1ep3_B Dihydroorotate dehydrog 48.8 9.1 0.00031 29.5 2.3 30 66-99 205-239 (262)
65 2dzi_A Ubiquitin-like protein 47.6 33 0.0011 21.1 4.6 29 43-71 6-34 (81)
66 1v2y_A 3300001G02RIK protein; 47.3 35 0.0012 23.4 5.0 27 44-70 7-33 (105)
67 3hvz_A Uncharacterized protein 40.7 34 0.0012 22.2 3.9 27 46-74 7-33 (78)
68 1yqb_A Ubiquilin 3; structural 40.3 46 0.0016 22.0 4.6 34 37-71 15-48 (100)
69 3mtn_B UBA80, ubcep1, ubiquiti 40.0 47 0.0016 20.5 4.4 28 44-71 3-30 (85)
70 4dwf_A HLA-B-associated transc 38.3 45 0.0015 21.2 4.2 28 44-71 5-32 (90)
71 2wyq_A HHR23A, UV excision rep 38.1 43 0.0015 20.8 4.0 28 43-70 4-31 (85)
72 1e0g_A Membrane-bound lytic mu 37.7 19 0.00065 20.1 2.0 19 58-76 4-22 (48)
73 3m62_B UV excision repair prot 37.4 25 0.00087 23.6 2.9 28 44-71 1-28 (106)
74 2lxa_A Ubiquitin-like protein 37.2 18 0.00062 23.8 2.1 27 44-70 1-29 (87)
75 1wwt_A Threonyl-tRNA synthetas 36.0 51 0.0017 21.1 4.2 31 42-76 9-40 (88)
76 3phx_B Ubiquitin-like protein 34.7 68 0.0023 19.6 4.5 28 44-71 4-31 (79)
77 2hj8_A Interferon-induced 17 k 34.5 52 0.0018 21.0 4.0 28 44-71 4-31 (88)
78 2l32_A Small archaeal modifier 33.6 74 0.0025 20.1 4.6 30 45-76 3-32 (74)
79 2kmm_A Guanosine-3',5'-BIS(dip 32.6 48 0.0016 20.1 3.5 28 45-76 3-30 (73)
80 1wgr_A Growth factor receptor- 32.1 1E+02 0.0036 21.0 5.4 28 47-74 12-39 (100)
81 4eew_A Large proline-rich prot 31.9 61 0.0021 20.4 4.0 29 43-71 16-44 (88)
82 1wh3_A 59 kDa 2'-5'-oligoadeny 31.0 64 0.0022 20.1 4.0 29 43-71 6-34 (87)
83 1wyw_B Ubiquitin-like protein 29.4 69 0.0023 20.9 4.0 31 41-71 18-48 (97)
84 1wia_A Hypothetical ubiquitin- 29.3 69 0.0024 20.6 4.0 30 43-72 6-35 (95)
85 2uyz_B Small ubiquitin-related 29.1 70 0.0024 19.6 3.9 26 45-70 4-29 (79)
86 2l7r_A Ubiquitin-like protein 28.7 62 0.0021 21.0 3.7 30 40-71 15-44 (93)
87 3n3k_B Ubiquitin; hydrolase, p 28.5 51 0.0017 20.4 3.1 28 44-71 3-30 (85)
88 1ndd_A NEDD8, protein (ubiquit 26.1 94 0.0032 18.4 4.0 26 46-71 2-27 (76)
89 2eke_C Ubiquitin-like protein 25.7 1.4E+02 0.0048 20.3 5.2 26 43-69 30-55 (106)
90 1wy8_A NP95-like ring finger p 25.7 1.1E+02 0.0039 19.0 4.5 29 43-71 6-36 (89)
91 1j8c_A Ubiquitin-like protein 25.6 1.7E+02 0.0057 20.2 6.5 29 42-71 30-58 (125)
92 2jxx_A Nfatc2-interacting prot 24.8 1E+02 0.0034 20.8 4.2 34 38-71 19-53 (97)
93 2ojr_A Ubiquitin; lanthide-bin 24.7 1.1E+02 0.0038 20.3 4.5 29 43-71 34-62 (111)
94 2kk8_A Uncharacterized protein 23.9 97 0.0033 19.7 3.9 27 45-71 11-37 (84)
95 2bwf_A Ubiquitin-like protein 23.2 66 0.0022 19.4 2.8 27 44-71 4-30 (77)
96 2dzj_A Synaptic glycoprotein S 23.0 1.1E+02 0.0039 19.6 4.1 27 44-70 10-39 (88)
97 2djp_A Hypothetical protein SB 22.3 38 0.0013 21.1 1.5 20 57-76 16-35 (77)
98 3erw_A Sporulation thiol-disul 21.7 33 0.0011 22.6 1.2 26 34-59 5-30 (145)
99 3a9j_A Ubiquitin; protein comp 21.3 1E+02 0.0036 18.2 3.5 26 46-71 2-27 (76)
100 2kdb_A Homocysteine-responsive 21.2 1.2E+02 0.0041 20.1 4.0 29 42-70 21-51 (99)
101 1oqj_A Glucocorticoid modulato 20.8 69 0.0023 21.9 2.7 27 64-95 68-94 (97)
102 2bp3_S Platelet glycoprotein I 20.7 28 0.00095 18.0 0.5 12 16-27 2-13 (26)
103 3vdz_A Ubiquitin-40S ribosomal 20.7 1.5E+02 0.005 19.8 4.4 29 43-71 34-62 (111)
104 1wxv_A BAG-family molecular ch 20.4 1.7E+02 0.0059 18.4 4.8 27 43-70 6-37 (92)
No 1
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.97 E-value=1.8e-31 Score=198.11 Aligned_cols=114 Identities=22% Similarity=0.406 Sum_probs=101.8
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHH
Q 031532 35 APSAKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEE 114 (158)
Q Consensus 35 ~~~~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~ 114 (158)
.....++++|++|+|++++|.+++|++.+|+|||++++++||. ...+.|+|.|.|| ||+|+|.+||++++++++..|.
T Consensus 12 ~~~~~~~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-gi~~~C~G~G~Cg-tC~v~v~~G~~~~l~~~~~~E~ 89 (126)
T 3hui_A 12 SGLVPRGSHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIP-GVEAECGGACACA-TCHVYVDEAWREKVGGPSPMEE 89 (126)
T ss_dssp ---CCTTCSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCT-TCCCTTSSSSCCS-TTEEEECGGGHHHHCCCCHHHH
T ss_pred ccccCCCCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCC-CCccCCCCCCCCC-CCEEEECCCcccccCCCCHHHh
Confidence 5778899999999999999998999999999999999999993 1457899999998 9999999998888899999999
Q ss_pred HhhhcccccccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 115 YVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 115 ~~L~~~~~~~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
++|+. ..++.++||||||+++.+||||++|+||+.+
T Consensus 90 ~~L~~---~~e~~~g~RLaCQ~~~~~dldgl~V~lp~~~ 125 (126)
T 3hui_A 90 DMLDF---GYDVRPNSRLSCQIKVSNELDGLIVTTPERQ 125 (126)
T ss_dssp HHHTT---SSSCCTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred hhcCc---hhhccCCeEEeeeCEECcCCCcEEEEecCcC
Confidence 99984 2688899999999999999999999999864
No 2
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.96 E-value=5.8e-30 Score=183.98 Aligned_cols=104 Identities=31% Similarity=0.473 Sum_probs=94.0
Q ss_pred CCcceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCc--CCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhh
Q 031532 41 ADRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPAS--HRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLK 118 (158)
Q Consensus 41 ~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~--~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~ 118 (158)
..+|++|+|++++|..++|++.+|+|||++++++|| +.. +.|+|.|.|| ||||+|.+||++.++++++.|.++|+
T Consensus 3 ~~~m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi--~i~~~~~Cgg~G~Cg-tC~v~v~~g~~~~l~~~~~~E~~~L~ 79 (108)
T 2bt6_A 3 SGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNL--DIDGFGACEGTLACS-TCHLIFEQHIFEKLEAITDEENDMLD 79 (108)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTC--CCTTTTTTSSSSSBS-TTEEECCHHHHTTSCCCCHHHHHHHT
T ss_pred CCceEEEEEECCCCCEEEEEECCCChHHHHHHHcCC--CCCcccCCCCCcCcC-CCEEEECccccccCCCCCHHHHHHHh
Confidence 456999999988998889999999999999999999 345 6899999998 99999999988899999999999999
Q ss_pred cccccccCCCCcEEeeceEEecCCCccEEEeC
Q 031532 119 RNSRARVLNLHSRLGCQVVLTHDLEGMVVAVP 150 (158)
Q Consensus 119 ~~~~~~~~~~~sRLACQi~l~~dldG~vI~lp 150 (158)
. ..++.++||||||+++.+|+||++|++|
T Consensus 80 ~---~~~~~~g~rLaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 80 L---AYGLTDRSRLGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp T---CTTCCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred C---cccCCCCcEeeEEEEecCCCCCEEEEcC
Confidence 5 2678899999999999999999999987
No 3
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.96 E-value=1.4e-29 Score=181.71 Aligned_cols=104 Identities=28% Similarity=0.472 Sum_probs=94.7
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccc
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRAR 124 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~ 124 (158)
++|||++++|..++|++.+|+|||++++++|+. ...+.|+|.|.|| +|||+|.+|+++++++++..|.++|+. ..
T Consensus 1 ~~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~-~i~~~C~G~G~Cg-tC~v~v~~g~~~~l~~~~~~e~~~L~~---~~ 75 (104)
T 3lxf_A 1 TAILVTTRDGTRTEIQAEPGLSLMEALRDAGID-ELLALCGGCCSCA-TCHVLVAPAFADRLPALSGDENDLLDS---SD 75 (104)
T ss_dssp CEEEEECTTSCEEEEECCTTSBHHHHHHHTTCT-TCCCTTCSSSSCS-TTEEEECGGGGGGSCCCCHHHHHHHHT---ST
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCC-CCCcCCCCCCCCC-CCEEEECCcccccCCCCCHHHHHHhcc---cc
Confidence 479999999999999999999999999999993 1457899999998 999999999988999999999999994 26
Q ss_pred cCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 125 VLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 125 ~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
++.++||||||+++.+||||++|++|+.+
T Consensus 76 ~~~~g~rLaCq~~~~~dl~gl~v~ip~~~ 104 (104)
T 3lxf_A 76 HRTPHSRLSCQITINDKLEGLEVEIAPED 104 (104)
T ss_dssp TCCTTEEEGGGCBCCGGGTTCEEEECCCC
T ss_pred ccCCCcEEEeeCEEccCCCCEEEEecCCC
Confidence 78999999999999999999999999864
No 4
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=181.37 Aligned_cols=107 Identities=36% Similarity=0.606 Sum_probs=96.2
Q ss_pred CCcceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcc
Q 031532 41 ADRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRN 120 (158)
Q Consensus 41 ~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~ 120 (158)
.++|++|+|++++|..++|++.+|+|||++++++|| +..+.|+|.|.|| ||||+|.+|+++.++++++.|.++|+.
T Consensus 2 ~~~m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi--~i~~~C~g~G~Cg-tC~v~v~~g~~~~l~~~~~~E~~~L~~- 77 (109)
T 2y5c_A 2 ASDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGV--DLEGACEASLACS-TCHVYVSEDHLDLLPPPEEREDDMLDM- 77 (109)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTC--CCCCTTSSSSSCC-TTEEEECHHHHTTSCCCCHHHHHHHHT-
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCC--CCCcCCCCCcCcC-ccEEEECCcchhhcCCCCHHHHHHHhc-
Confidence 356999999988998888999999999999999999 3447899999998 999999999888899999999999984
Q ss_pred cccccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 121 SRARVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 121 ~~~~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
..++.+|||||||+++.+|+||++|++|+..
T Consensus 78 --~~~~~~g~rLaCq~~~~~d~~~~~v~ip~~~ 108 (109)
T 2y5c_A 78 --APLLQENSRLGCQIVLTPELEGAEFTLPKIT 108 (109)
T ss_dssp --STTCCTTEEEGGGCBCCGGGTTCEEECCSCC
T ss_pred --cccCCCCcEeeEEeEEecCCCeEEEEecCCC
Confidence 2578899999999999999999999999753
No 5
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.96 E-value=5.3e-31 Score=194.87 Aligned_cols=107 Identities=30% Similarity=0.467 Sum_probs=25.3
Q ss_pred CCcceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCc--CCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhh
Q 031532 41 ADRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPAS--HRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLK 118 (158)
Q Consensus 41 ~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~--~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~ 118 (158)
.++|++|+|++++|..++|++.+|+|||++++++|| +.. +.|+|.|.|| ||||+|.++|+++++++++.|.++|+
T Consensus 2 ~~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi--~i~g~~~CgG~g~Cg-tC~v~v~~~~~~~l~~~~~~E~~~L~ 78 (123)
T 3n9z_C 2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNL--DIDGFGACEGTLACS-TCHLIFEDHIYEKLDAITDEENDMLD 78 (123)
T ss_dssp -------------------------------------------CTTCSSSSCS-TTBC--------------CHHHHHHC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCC--CCCcCCCCCCCCEeC-CCeeEEeccccccCCCCChHHHhhhc
Confidence 468999999999998899999999999999999999 333 6899999998 99999998888899999999999998
Q ss_pred cccccccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 119 RNSRARVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 119 ~~~~~~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
. +.++.++||||||+++.+||||++|+||+..
T Consensus 79 ~---~~~~~~~~RLaCQ~~v~~~ld~l~V~ip~~~ 110 (123)
T 3n9z_C 79 L---AYGLTDRSRLGCQICLTKSMDNMTVRVPETV 110 (123)
T ss_dssp C-----------CBCC-------------------
T ss_pred c---cccccCCeEEeeEeEEccCCCCEEEEECccc
Confidence 5 3678899999999999999999999999864
No 6
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.95 E-value=2.2e-27 Score=169.81 Aligned_cols=104 Identities=25% Similarity=0.494 Sum_probs=92.9
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccc
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRAR 124 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~ 124 (158)
++|+|+.++|..++|++.+|+|||++++++||. ...+.|+|.|.|| +|+|+|.+||++++++++..|.++|+. .+
T Consensus 1 ~~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~-~i~~~C~g~G~Cg-tC~v~v~~g~~~~l~~~~~~e~~~L~~---~~ 75 (106)
T 1xlq_A 1 SKVVYVSHDGTRRELDVADGVSLMQAAVSNGIY-DIVGDCGGSASCA-TCHVYVNEAFTDKVPAANEREIGMLES---VT 75 (106)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHTTCT-TSCCTTCSSSSSC-TTEEEECTTTGGGSCCCCHHHHHHHTT---CS
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCC-CCCcCCCCCcccC-cCEEEECCcccccCCCCCHHHHHHhhc---cc
Confidence 468998889988899999999999999999993 1557899999998 999999999999999999999999995 23
Q ss_pred cC-CCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 125 VL-NLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 125 ~~-~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
++ .+++||+||+++.+|+||++|++|+.+
T Consensus 76 ~~~~~g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1xlq_A 76 AELKPNSRLCCQIIMTPELDGIVVDVPDRQ 105 (106)
T ss_dssp SCCCTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred ccCCCCcEeeeeeEeecCCCCEEEEecCcc
Confidence 47 899999999999999999999999865
No 7
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.94 E-value=3.2e-27 Score=168.94 Aligned_cols=104 Identities=28% Similarity=0.488 Sum_probs=93.0
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccc
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRAR 124 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~ 124 (158)
++|+|+.++|..++|++.+|+|||++++++||. ...+.|+|.|.|| +|+|+|.+||++.+++++..|.++|+. ..
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~-~i~~~C~g~G~Cg-tC~v~v~~g~~~~l~~~~~~e~~~L~~---~~ 75 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVP-GIDADCGGACACS-TCHAYVDPAWVDKLPKALPTETDMIDF---AY 75 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHHHTTTCT-TCCCTTSSSSSSC-TTEEEECHHHHTTSCCCCHHHHHHHTT---SS
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCC-CcccCCCCCCCcC-cCEEEECCcccccCCCCCHHHHHHhcC---cc
Confidence 478998889988899999999999999999993 1557899999998 999999999888899999999999995 23
Q ss_pred cCC-CCcEEeeceEEecCCCccEEEeCCCC
Q 031532 125 VLN-LHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 125 ~~~-~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
++. +++||+||+++.+|+||++|++|+.+
T Consensus 76 ~~~~~g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1uwm_A 76 EPNPATSRLTCQIKVTSLLDGLVVHLPEKQ 105 (106)
T ss_dssp SCCTTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred ccCCCCcEecccCEEccCCCCEEEEecCCC
Confidence 688 99999999999999999999999765
No 8
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.94 E-value=2e-27 Score=169.81 Aligned_cols=103 Identities=22% Similarity=0.471 Sum_probs=91.7
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhh-ccccc
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLK-RNSRA 123 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~-~~~~~ 123 (158)
++|+|+.++|..++|++.+|+|||++++++||. ...+.|+|.|.|| +|||+|.+||++++++++..|.++|+ . .
T Consensus 1 ~~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~-~i~~~C~g~G~Cg-tC~v~v~~G~~~~l~~~~~~e~~~L~~~---~ 75 (105)
T 1b9r_A 1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVP-GIVAECGGSCVCA-TCRIEIEDAWVEIVGEANPDENDLLQST---G 75 (105)
T ss_dssp CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCC-CCCCSSTTSSCCC-CCCCEECTTTHHHHTCCCTTHHHHHHTS---C
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCC-CcCcCCCCCCCcC-cCEEEECCcccccCCCCCHHHHHHhhcc---c
Confidence 478997788988899999999999999999993 1557899999998 99999999988888899999999998 2 2
Q ss_pred ccCCCCcEEeeceEEecCCCccEEEeCCC
Q 031532 124 RVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152 (158)
Q Consensus 124 ~~~~~~sRLACQi~l~~dldG~vI~lp~~ 152 (158)
.++.++||||||+++.+|+|+++|++|+.
T Consensus 76 ~~~~~g~rLaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 76 EPMTAGTRLSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp CCCCTTBSCGGGCCCCTTSTTEEEECCSC
T ss_pred ccCCCCcEeeeeCEecCCCCcEEEEecCC
Confidence 67889999999999999999999999864
No 9
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=2e-26 Score=164.05 Aligned_cols=102 Identities=33% Similarity=0.532 Sum_probs=91.8
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
++++|+|.+++|..++|++.+|+|||++++++|+ ...+.|+|.|.|| +|+|+|.+|+++.++++++.|.++|+.
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi--~i~~~C~g~G~Cg-~C~v~v~~g~~~~~~~~~~~E~~~L~~--- 75 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNI--DLEGACEGSVACS-TCHVIVDPEHYELLDPPEEDEEDMLDL--- 75 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHHHHHTTC--CCCCTTTTSSCCS-TTEEEECHHHHHHSCCCCHHHHHHHTT---
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCC--CcCcCCCCCCCcC-CCEEEECCCchhccCCCCHHHHHHHhc---
Confidence 3678999978898889999999999999999999 3447899999998 999999999888888999999999995
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVP 150 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp 150 (158)
..++.+++||+||+++.+|+||++|++|
T Consensus 76 ~~~~~~g~rLaCq~~~~~d~~~l~v~lp 103 (103)
T 2wlb_A 76 AFGLEETSRLGCQVLLRKDLDGIRVRIP 103 (103)
T ss_dssp BTTCCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred ccCCCCCcEeeEeeEeCCCCCcEEEEcC
Confidence 2568899999999999999999999987
No 10
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.91 E-value=3.5e-24 Score=154.87 Aligned_cols=100 Identities=21% Similarity=0.378 Sum_probs=87.0
Q ss_pred ceEEEEECCCC---CEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcc
Q 031532 44 IVHLFAIDPDG---QKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRN 120 (158)
Q Consensus 44 m~~Vt~v~~~G---~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~ 120 (158)
|++|+|++++| ..++|++.+|+|||++++++|| ...+.|+|.|.|| +|+|+|.+|+ +.+++++..|..+|+.
T Consensus 1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi--~i~~~C~g~G~Cg-tC~v~v~~G~-~~~~~~~~~e~~~L~~- 75 (113)
T 3ah7_A 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHI--EMESACGGVKACT-TCHCIVRKGF-DSLEEADELEEDMLDK- 75 (113)
T ss_dssp CCEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTC--CCCCTTCSSSSCS-TTEEEEEESG-GGSCCCCHHHHHHHTT-
T ss_pred CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCC--CCCcCCCCCCCcC-CCEEEEcCCc-ccCCCCCHHHHHhhhc-
Confidence 78999998876 6689999999999999999999 3447899999998 9999999995 6788899999999984
Q ss_pred cccccCCCCcEEeeceEEe-cCCCccEEEeCCCC
Q 031532 121 SRARVLNLHSRLGCQVVLT-HDLEGMVVAVPEPR 153 (158)
Q Consensus 121 ~~~~~~~~~sRLACQi~l~-~dldG~vI~lp~~~ 153 (158)
..++.+++|||||+++. +| ++|++|+.+
T Consensus 76 --~~~~~~g~rLaCq~~~~~~d---l~v~~~~~~ 104 (113)
T 3ah7_A 76 --AWGLEAQSRLGCQVFVADED---LTIEIPKYS 104 (113)
T ss_dssp --STTCCTTEEEGGGCBCCSSC---EEEECCSCC
T ss_pred --ccccCCCcEEeeeCEEeCCC---EEEEECchh
Confidence 23788999999999998 55 599998764
No 11
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.88 E-value=8.3e-23 Score=143.17 Aligned_cols=92 Identities=24% Similarity=0.390 Sum_probs=79.1
Q ss_pred EEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccccccc
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRARV 125 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~~ 125 (158)
+|+|. .+|..++|++.+|+|||++++++|+. ...+.|+|.|.|| +|+|+|.+|. ++++++.|.++|+ +
T Consensus 2 ~v~i~-~~g~~~~~~~~~g~tll~a~~~~gi~-gi~~~C~G~G~Cg-~C~v~v~~g~---~~~~~~~e~~~L~------~ 69 (93)
T 1l5p_A 2 TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLM-SADDTCQGNKACG-KCICKHVSGK---VAAAEDDEKEFLE------D 69 (93)
T ss_dssp EEEEE-ETTEEEEEECCTTEEHHHHHHTTTSS-CCTTSCSSSSSSC-CCEEEEEESC---CCCCCHHHHHHHT------T
T ss_pred eEEEE-eCCcEEEEEECCCChHHHHHHHcCCC-cCCcCCCCcCCcC-CCEEEECCCc---CCCCCHHHHHHhc------C
Confidence 45643 57877899999999999999999993 1457899999998 9999999873 6778888988887 4
Q ss_pred CCCCcEEeeceEEecCCCccEEEe
Q 031532 126 LNLHSRLGCQVVLTHDLEGMVVAV 149 (158)
Q Consensus 126 ~~~~sRLACQi~l~~dldG~vI~l 149 (158)
+.+++||+||+++.+|++|++|+|
T Consensus 70 ~~~g~rLaCq~~~~~d~~g~~v~~ 93 (93)
T 1l5p_A 70 QPANARLACAITLSGENDGAVFEL 93 (93)
T ss_dssp SCTTEEEGGGCEECGGGTTCEEEC
T ss_pred CCCCcEEeeECEECCCCCceEEEC
Confidence 679999999999999999999986
No 12
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.87 E-value=5.5e-22 Score=142.99 Aligned_cols=100 Identities=28% Similarity=0.481 Sum_probs=83.5
Q ss_pred ceEEEEECCCC---CEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcc
Q 031532 44 IVHLFAIDPDG---QKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRN 120 (158)
Q Consensus 44 m~~Vt~v~~~G---~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~ 120 (158)
|++|+|+..+| ..++|++.+|+|||++++++|+ ...+.|+|.|.|| +|+|+|.+|+ ..+.+++..|.++|+.
T Consensus 1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi--~i~~~C~~~G~Cg-~C~v~v~~G~-~~~~~~~~~e~~~L~~- 75 (111)
T 1i7h_A 1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGI--EIEHACEKSCACT-TCHCIVREGF-DSLPESSEQEDDMLDK- 75 (111)
T ss_dssp -CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTC--CCCCTTSSSSCCS-TTEEEEEECG-GGSCCCCHHHHHHHTT-
T ss_pred CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCC--CCcccCCCCCcCC-CCEEEEccCc-ccCCCCCHHHHHHhhh-
Confidence 78999997665 5689999999999999999999 3447898899998 9999999995 4567888999999984
Q ss_pred cccccCCCCcEEeeceEEe-cCCCccEEEeCCCC
Q 031532 121 SRARVLNLHSRLGCQVVLT-HDLEGMVVAVPEPR 153 (158)
Q Consensus 121 ~~~~~~~~~sRLACQi~l~-~dldG~vI~lp~~~ 153 (158)
..++.+++||+||+++. +| ++|++|+.+
T Consensus 76 --~~~~~~g~rLaCq~~~~~~d---l~v~~~~~~ 104 (111)
T 1i7h_A 76 --AWGLEPESRLSCQARVTDED---LVVEIPRYT 104 (111)
T ss_dssp --CTTCCTTEEETTTCBCCSSC---EEEECCSCC
T ss_pred --ccccCCCcEEEEEEEEeCCC---EEEEEChHH
Confidence 23678899999999996 65 599998743
No 13
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.79 E-value=1.1e-20 Score=133.05 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=77.3
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
+|++|+|.+++|..++|++.+|+|||++++++|+ ...+.| |.|.|| +|+|+|.+|+.+. .+.|...|+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi--~i~~~C-~~G~Cg-~C~v~v~~G~~~~----~~~e~~~L~~--- 71 (98)
T 1jq4_A 3 RVHTITAVTEDGESLRFECRSDEDVITAALRQNI--FLMSSC-REGGCA-TCKALCSEGDYDL----KGCSVQALPP--- 71 (98)
T ss_dssp CEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTC--CCCCSC-CSSCCC-CCCBCEEECCCCC----CCSCTTTSCH---
T ss_pred CcEEEEEEecCCCcEEEEeCCCChHHHHHHHcCC--CCcCCC-CCCCCC-CCEEEEEcCcccc----CcccccccCH---
Confidence 3789999877777789999999999999999999 344789 799998 9999999986432 2234556763
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeCCC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp~~ 152 (158)
.++.+++||+||+++.+|+ +|++|+.
T Consensus 72 -~~~~~g~~LaCq~~~~~d~---~v~~~~~ 97 (98)
T 1jq4_A 72 -EEEEEGLVLLCRTYPKTDL---EIELPYT 97 (98)
T ss_dssp -HHHHHHCBCTTTCCSSCCS---EEECSCC
T ss_pred -HHhcCCcEEEeeCEECCCE---EEEecCC
Confidence 5567799999999999985 9999764
No 14
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.77 E-value=2.7e-19 Score=126.09 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=74.2
Q ss_pred ceEEEEECCCCC-EEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 44 IVHLFAIDPDGQ-KRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 44 m~~Vt~v~~~G~-~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
.++|+|+.++|. .++|++.+|+|||++++++|+ ...+.|+ .|.|| +|+|+|.+|+.+. .|..+|+.
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi--~i~~~C~-~G~Cg-~C~v~v~~G~~~~------~e~~~L~~--- 68 (98)
T 1czp_A 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGY--DLPFSCR-AGACS-TCAGKLVSGTVDQ------SDQSFLDD--- 68 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTC--CCCCSSS-SSSSS-TTEEEEEESCEEC------TTCCSSCH---
T ss_pred ceEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCC--CccCCCC-CCCCC-CCeEEEccCCcCc------cccccCCH---
Confidence 468999866654 578999999999999999999 3447896 89998 9999999886432 23345653
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
.++.+++||+||+++.+|+ +|++|+..
T Consensus 69 -~e~~~g~~LaCq~~~~~d~---~v~~~~~~ 95 (98)
T 1czp_A 69 -DQIEAGYVLTCVAYPTSDV---VIQTHKEE 95 (98)
T ss_dssp -HHHHTTEEEGGGCEESSCE---EEECCCTT
T ss_pred -HHhhCCeEEeeeCEECCCE---EEEecccc
Confidence 4566899999999999985 99998754
No 15
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.76 E-value=4.1e-19 Score=123.99 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=73.0
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccccc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRA 123 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~ 123 (158)
+++|+|..++| .++|++.+|+|||++++++|| ...+.|+ .|.|| +|+|+|.+|..+. .|..+|+.
T Consensus 1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi--~i~~~C~-~G~Cg-~C~v~v~~G~~~~------~~~~~L~~---- 65 (95)
T 1frr_A 1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGY--DLPFSCR-AGACS-SCLGKVVSGSVDE------SEGSFLDD---- 65 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTC--CCCCSSS-SSSSS-TTEEEEEESCEEC------TTCCSCCH----
T ss_pred CeEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCC--CCCCCCC-CcCCC-CCEEEEEeCCccc------cccccCCH----
Confidence 46788875677 678999999999999999999 3447896 89998 9999999885432 23345653
Q ss_pred ccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 124 RVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 124 ~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
.++..++||+||+++.+|+ +|++++..
T Consensus 66 ~~~~~g~~LaC~~~~~~~~---~v~~~~~~ 92 (95)
T 1frr_A 66 GQMEEGFVLTCIAIPESDL---VIETHKEE 92 (95)
T ss_dssp HHHHTTEEETTTCEESSCE---EEECCCTT
T ss_pred HHHhCCcEEeeECEECCCE---EEEEcchh
Confidence 4566899999999999874 99998754
No 16
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.76 E-value=2.2e-19 Score=126.40 Aligned_cols=92 Identities=14% Similarity=0.256 Sum_probs=72.7
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccccc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRA 123 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~ 123 (158)
.++|+|..++| .++|++.+|+|||++++++|+ ...+.|+ .|.|| +|+|+|.+|..+. .|..+|+.
T Consensus 2 ~~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi--~i~~~C~-~G~Cg-~C~v~v~~G~~~~------~e~~~L~~---- 66 (97)
T 1a70_A 2 AYKVTLVTPTG-NVEFQCPDDVYILDAAEEEGI--DLPYSCR-AGSCS-SCAGKLKTGSLNQ------DDQSFLDD---- 66 (97)
T ss_dssp EEEEEEEETTE-EEEEEEETTSCHHHHHHHTTC--CCCCSSS-SSCSS-TTEEEEEESCEEC------TTCCSSCH----
T ss_pred eEEEEEEeCCc-eEEEEeCCCCcHHHHHHHcCC--CcccCCC-CcCCC-CCeEEEccCCcCc------cccccCCH----
Confidence 36788875555 578999999999999999999 3447896 89998 9999999885432 23446663
Q ss_pred ccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 124 RVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 124 ~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
.++..|+||+||+++.+| ++|++|+..
T Consensus 67 ~e~~~g~~LaCq~~~~~d---~~v~~~~~~ 93 (97)
T 1a70_A 67 DQIDEGWVLTCAAYPVSD---VTIETHKKE 93 (97)
T ss_dssp HHHHHTEEEGGGCEESSC---EEEECCCGG
T ss_pred HHhhCCeEEEeECEECCC---EEEEeCchh
Confidence 456688999999999998 499998753
No 17
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.75 E-value=4e-19 Score=124.34 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=71.4
Q ss_pred EEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccccccc
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRARV 125 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~~ 125 (158)
+|+|..++| .++|++.+|+|||++++++|+ ...+.|+ .|.|| +|+|+|.+|..+. .|..+|+. .+
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi--~i~~~C~-~G~Cg-~C~v~v~~G~~~~------~e~~~L~~----~e 66 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAAEEAGL--DLPYSCR-AGACS-SCAGKVESGEVDQ------SDQSFLDD----AQ 66 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHHHHTTC--CCCCSSS-SSSSS-TTEEEEEESCEEC------TTCCSSCH----HH
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHHHHcCC--CCCcCCC-CCcCC-CCEEEEEeCCcCc------cccccCCH----HH
Confidence 678875566 578999999999999999999 3447896 89998 9999999885432 23446663 45
Q ss_pred CCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 126 LNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 126 ~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
+.+++||+||+++.+|+ +|++|+..
T Consensus 67 ~~~g~~LaCq~~~~~d~---~i~~~~~~ 91 (94)
T 1awd_A 67 MGKGFVLTCVAYPTSDV---TILTHQEA 91 (94)
T ss_dssp HHTTEEEGGGCEESSCE---EEECCCGG
T ss_pred HhCCcEEeeECEECCCE---EEEecchh
Confidence 66899999999999874 99998753
No 18
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.75 E-value=1.1e-18 Score=122.73 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=72.5
Q ss_pred ceEEEEECCCC-CEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 44 IVHLFAIDPDG-QKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 44 m~~Vt~v~~~G-~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
+++|+|..+++ ..++|++.+|+|||++++++|| ...+.|+ .|.|| +|+|+|.+|..+. .|..+|+.
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi--~i~~~C~-~G~Cg-~C~v~v~~G~~~~------~e~~~L~~--- 68 (98)
T 1frd_A 2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGI--ELPFSCH-SGSCS-SCVGKVVEGEVDQ------SDQIFLDD--- 68 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTC--CCCCSSS-SSSSS-TTEEEEEESCEEC------TTCCSCCH---
T ss_pred ceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCC--CcccCCC-CCCCC-CCEEEEEeCCccc------cccccCCH---
Confidence 46889986554 2578999999999999999999 3447896 89998 9999999885432 23346663
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeCCC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp~~ 152 (158)
.++..++||+||+++.+|+ +|++|+.
T Consensus 69 -~e~~~g~~LaC~~~~~~d~---~v~~~~~ 94 (98)
T 1frd_A 69 -EQMGKGFALLCVTYPRSNC---TIKTHQE 94 (98)
T ss_dssp -HHHHTTEEEGGGCEESSSE---EEECCCG
T ss_pred -HHhhCCcEEEeECEECCCE---EEEecch
Confidence 4566899999999999985 9999875
No 19
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.74 E-value=1.2e-18 Score=122.94 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=72.1
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccccc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRA 123 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~ 123 (158)
.++|+|...+| .++|++.+|+|||++++++|+ ...+.|+ .|.|| +|+|+|.+|+.+. .|...|+.
T Consensus 2 ~~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi--~i~~~C~-~G~Cg-~C~v~v~~G~~~~------~e~~~L~~---- 66 (98)
T 1iue_A 2 FYNITLRTNDG-EKKIECNEDEYILDASERQNV--ELPYSCR-GGSCS-TCAAKLVEGEVDN------DDQSYLDE---- 66 (98)
T ss_dssp EEEEEEEETTE-EEEEEEETTSCHHHHHHHTTC--CCCCSSC-SSSSS-TTEEEEEESCEEC------TTCCSSCH----
T ss_pred cEEEEEEeCCC-eEEEEeCCCCcHHHHHHHcCC--CCCCCCC-CCcCC-CCEEEEeeCCccc------cccccCCH----
Confidence 35788875555 578999999999999999999 3447896 89998 9999999886432 23445663
Q ss_pred ccCCCCcEEeeceEEecCCCccEEEeCCC
Q 031532 124 RVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152 (158)
Q Consensus 124 ~~~~~~sRLACQi~l~~dldG~vI~lp~~ 152 (158)
.++..++||+||+++.+|+ +|++|+.
T Consensus 67 ~e~~~g~~LaCq~~~~~d~---~i~~~~~ 92 (98)
T 1iue_A 67 EQIKKKYILLCTCYPKSDC---VIETHKE 92 (98)
T ss_dssp HHHHTTEEEGGGCEESSCE---EEECCCH
T ss_pred HHHhCCeEEEeECEECCCe---EEEeCCh
Confidence 4566899999999999985 9999864
No 20
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.73 E-value=7.8e-19 Score=122.73 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=71.9
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccccc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRA 123 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~ 123 (158)
|++|+|..++| .++|++.+|+|||++++++| .. .+.|+ .|.|| +|+|+|.+|..+. .|..+|+.
T Consensus 1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i--~~~C~-~G~Cg-~C~v~v~~G~~~~------~e~~~L~~---- 64 (93)
T 1wri_A 1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEKA-DL--PLSCQ-AGACS-TCLGKIVSGTVDQ------SEGSFLDD---- 64 (93)
T ss_dssp CEEEEEEETTE-EEEEEECTTSCHHHHHHHHS-CC--CCSSS-SSSSS-TTEEEEEESCEEC------TTCCSCCH----
T ss_pred CEEEEEEECCC-eEEEEECCCCcHHHHHHHCc-CC--CCCCC-CCCCC-CCEEEEecCccCc------cccccCCH----
Confidence 46788875555 57899999999999999999 43 36896 89998 9999999885332 23456663
Q ss_pred ccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 124 RVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 124 ~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
.++.+++||+||+++.+| ++|++|+..
T Consensus 65 ~~~~~g~~LaCq~~~~~d---~~v~~~~~~ 91 (93)
T 1wri_A 65 EQIEQGYVLTCIAIPESD---VVIETHKED 91 (93)
T ss_dssp HHHHTTEEETTTCEESSC---EEEECCCGG
T ss_pred HHHhCCcEEeeeCEECCC---EEEEecccc
Confidence 456689999999999998 499998753
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.72 E-value=3.6e-18 Score=142.07 Aligned_cols=97 Identities=21% Similarity=0.159 Sum_probs=80.1
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
+|++|+|.+++|..++|++.+|+||||+++++|+ ...+.|+ .|.|| +|+|+|.+|+.+. . +.+.|.+.|+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi--~i~~~C~-~g~Cg-~C~v~v~~G~~~~-~-~~~~~~~~l~~--- 72 (338)
T 1krh_A 2 SNHQVALQFEDGVTRFICIAQGETLSDAAYRQQI--NIPMDCR-EGECG-TCRAFCESGNYDM-P-EDNYIEDALTP--- 72 (338)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTC--CCSCSCS-SSSSC-TTEEEEEECCEEC-C-GGGSCTTTCCH---
T ss_pred CceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCC--CcccCCC-CcCCC-CCEEEEecCcEec-c-cCccccccCCH---
Confidence 3789999988888899999999999999999999 3447896 89998 9999999996533 2 13456677773
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeCCC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVPEP 152 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp~~ 152 (158)
.++.+|+||+||+++.+|+ +|++|+.
T Consensus 73 -~~~~~g~~LaCq~~~~~~~---~v~~~~~ 98 (338)
T 1krh_A 73 -EEAQQGYVLACQCRPTSDA---VFQIQAS 98 (338)
T ss_dssp -HHHHHTEEETTTCEESSSE---EEEESSC
T ss_pred -HHHhCCeEEEEeCEECCCe---EEEEecc
Confidence 5677899999999999985 9999875
No 22
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.64 E-value=1.6e-16 Score=117.78 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=76.6
Q ss_pred cCCCCCCCCcceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHH
Q 031532 34 AAPSAKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEE 113 (158)
Q Consensus 34 ~~~~~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E 113 (158)
+.....++.+|.+|++. .+| ..+|++.+|+|||++++++|+ ...+.| |.|.|| +|+|+|.+|+.+. .|
T Consensus 17 ~~~~~~~f~~m~~i~i~-~~g-~~~v~v~~g~tlL~aa~~~Gi--~i~~~C-~~G~Cg-tC~v~v~~G~v~~------~e 84 (128)
T 1doi_A 17 DMYDDDVFGEASDMDLD-DED-YGSLEVNEGEYILEAAEAQGY--DWPFSC-RAGACA-NCAAIVLEGDIDM------DM 84 (128)
T ss_dssp CTTTSCHHHHHHHSCCC-TTT-EEEEECCTTSCHHHHHHHTTC--CCCCSS-SSSSSS-TTEEEEEESCEEE------CC
T ss_pred ccccccccccccEEEEE-eCC-cEEEEECCCCcHHHHHHHcCC--CCccCC-CccCCC-CCEeEEecCCcCc------hh
Confidence 45667788889999884 566 238999999999999999999 344789 689998 9999999996432 23
Q ss_pred HHhhhcccccccCCCCcEEeeceEEecCCCccEEEeC
Q 031532 114 EYVLKRNSRARVLNLHSRLGCQVVLTHDLEGMVVAVP 150 (158)
Q Consensus 114 ~~~L~~~~~~~~~~~~sRLACQi~l~~dldG~vI~lp 150 (158)
...|+. .+....++||+||+++.+| .++|++.
T Consensus 85 ~~~L~~---~e~~~~g~rLaCq~~~~~d--~i~i~~~ 116 (128)
T 1doi_A 85 QQILSD---EEVEDKNVRLTCIGSPDAD--EVKIVYN 116 (128)
T ss_dssp CSSSCH---HHHHTSCEEEGGGEEECSS--EEEEEEC
T ss_pred hccCCH---hHhccCCEEEEEEeEEcCC--eEEEEec
Confidence 345652 1235789999999999998 3577653
No 23
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.62 E-value=2e-16 Score=143.13 Aligned_cols=92 Identities=20% Similarity=0.279 Sum_probs=75.5
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccc
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSR 122 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~ 122 (158)
.|++|+|. ++| ++|++.+|+|||++++++|+ ...+.|+|.|.|| +|+|+|.+|+.+. .|...|+.
T Consensus 2 ~m~~V~~~-~sg--~~v~v~~G~tLLeAa~~aGi--~ip~~C~G~G~CG-tC~v~V~~G~v~~------~e~~~Ls~--- 66 (631)
T 3zyy_X 2 AEYKVLFK-PDQ--KEVAISENTNLMEALNLAGI--NIKTVCGGAGTCG-KCLVRVVDGQKRV------ESYGKLKQ--- 66 (631)
T ss_dssp -CEEEEEE-TTT--EEEEECTTSCHHHHHHHHTC--CCCCSCCCSSCCS-TTEEEEEESCEEE------SCCTTCCH---
T ss_pred CceEEEEe-cCC--eEEEECCCCcHHHHHHHcCC--CCCcCCCCCCcCC-CCEEEEeeCcccc------cccccCCH---
Confidence 38899998 456 78999999999999999999 3447899999998 9999999997532 23346663
Q ss_pred cccCCCCcEEeeceEEecCCCccEEEeCCCC
Q 031532 123 ARVLNLHSRLGCQVVLTHDLEGMVVAVPEPR 153 (158)
Q Consensus 123 ~~~~~~~sRLACQi~l~~dldG~vI~lp~~~ 153 (158)
.++.+++||+||+++.+|+ +|++|+.+
T Consensus 67 -~e~~~G~rLaCqa~~~sDl---~Ielp~~~ 93 (631)
T 3zyy_X 67 -EEIAQGYVLACQTYPESDL---IIEIPFDS 93 (631)
T ss_dssp -HHHHTTEEETTTEEECSSE---EEECCTTS
T ss_pred -HHhcCCcEEeeeCEECCCE---EEEecchh
Confidence 5667899999999999995 99999764
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.43 E-value=5e-13 Score=110.73 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=64.4
Q ss_pred CcceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhccc
Q 031532 42 DRIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNS 121 (158)
Q Consensus 42 ~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~ 121 (158)
...++|+|. ..| ++|++.+|+||||+++++|+ ...+.| +.|.|| +|+|+|.+|..+. . + ..|+.
T Consensus 235 ~~~~~v~~~-~~~--~~~~~~~~~~ll~a~~~~g~--~~~~~C-~~G~Cg-~C~~~v~~G~~~~-~-----~-~~l~~-- 298 (321)
T 2pia_A 235 NTPFTVRLS-RSG--TSFEIPANRSILEVLRDANV--RVPSSC-ESGTCG-SCKTALCSGEADH-R-----D-MVLRD-- 298 (321)
T ss_dssp CCCEEEEET-TTC--CEEEECTTSCHHHHHHHTTC--CCCCSC-SSSSSC-TTEEEEEESCEEC-C-----C-SSCCT--
T ss_pred CccEEEEEe-CCC--eEEEECCCCcHHHHHHHcCC--CCCCCC-CCCCCC-CCEEEEecCcccc-c-----c-CCCCh--
Confidence 456788875 344 58899999999999999999 344789 689998 9999999996542 1 1 35663
Q ss_pred ccccCCCCcEEeeceEEecC
Q 031532 122 RARVLNLHSRLGCQVVLTHD 141 (158)
Q Consensus 122 ~~~~~~~~sRLACQi~l~~d 141 (158)
.+. .++||+||.++.+|
T Consensus 299 --~e~-~g~~L~C~~~~~~d 315 (321)
T 2pia_A 299 --DEK-GTQIMVCVSRAKSA 315 (321)
T ss_dssp --TTT-TTEEETTTCEESSS
T ss_pred --HHH-CCeEEEeEeEECCC
Confidence 456 99999999999997
No 25
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.22 E-value=1.9e-06 Score=79.40 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=55.9
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcCCC-----CCcccCCCccEEEEcCCCccCCCCCCHHHHHhhh
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASHRL-----EEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLK 118 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~~C-----gG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~ 118 (158)
|++|++ || ++|++++|+|||++++++|+ ...+.| ++.|.|+ .|.|+|.....+ .+-..+++
T Consensus 1 mv~i~i---dg--~~~~v~~g~til~a~~~~gi--~ip~~C~~~~~~~~G~C~-~C~V~v~~~~~~------~~g~~~~~ 66 (783)
T 3i9v_3 1 MVRVKV---ND--RIVEVPPGTSVMDAVFHAGY--DVPLFCSEKHLSPIGACR-MCLVRIGLPKKG------PDGKPLLN 66 (783)
T ss_dssp CEEEEC---SS--CEEEECTTCBHHHHHHHTTC--CCCCSSCCTTSCCCCCSC-CSEEEEECC-----------------
T ss_pred CeEEEE---CC--EEEEeCCCChHHHHHHHhCC--CccccCCCCCCCCCcccC-CcEEEecccccc------cccccccc
Confidence 666665 67 47899999999999999999 223457 5688998 999999543110 00111222
Q ss_pred ccccccc-----CCCCcEEeeceEEecCCCccEEEeC
Q 031532 119 RNSRARV-----LNLHSRLGCQVVLTHDLEGMVVAVP 150 (158)
Q Consensus 119 ~~~~~~~-----~~~~sRLACQi~l~~dldG~vI~lp 150 (158)
+ ++ -..+..+||++.+.++ |+|+..
T Consensus 67 ~----~G~~~~~~~~~~~~aC~t~v~~g---m~v~t~ 96 (783)
T 3i9v_3 67 E----KGEPEIQWQPKLAASCVTAVADG---MVVDTL 96 (783)
T ss_dssp ----------CCBCSSCEETTTCBCCSS---EEEESS
T ss_pred c----ccccccccCCCcccccCCCCCCC---CEEEEC
Confidence 1 11 1356789999998865 588764
No 26
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=97.99 E-value=1.7e-05 Score=70.86 Aligned_cols=70 Identities=17% Similarity=0.367 Sum_probs=50.4
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCC-CCCCcC--CCCC-cccCCCccEEEEcCCCccCCCCCCHHHHHhhhc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL-IDPASH--RLEE-IDACSAECEVNIAQEWLDRLPPRSYEEEYVLKR 119 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi-i~~~~~--~CgG-~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~ 119 (158)
|+++++ +| +.|++++|+|||++++++|+ ++..++ .|++ .|.|| .|.|.|. |.
T Consensus 1 mv~~~i---ng--~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg-~C~V~v~-g~----------------- 56 (574)
T 3c8y_A 1 MKTIII---NG--VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCE-ICTVEVE-GT----------------- 56 (574)
T ss_dssp CEEEEE---TT--EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCC-TTEEEET-TT-----------------
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCC-CCEEEeC-CC-----------------
Confidence 555665 56 57889999999999999999 433322 3436 88998 9999982 20
Q ss_pred ccccccCCCCcEEeeceEEecCCCccEEEe
Q 031532 120 NSRARVLNLHSRLGCQVVLTHDLEGMVVAV 149 (158)
Q Consensus 120 ~~~~~~~~~~sRLACQi~l~~dldG~vI~l 149 (158)
. .++||++.+.+ ||+|..
T Consensus 57 --------~-~~~aC~t~v~~---gm~V~T 74 (574)
T 3c8y_A 57 --------G-LVTACDTLIED---GMIINT 74 (574)
T ss_dssp --------E-EEEGGGCBCCT---TCEEES
T ss_pred --------c-ccccCCCCccc---ceeEEe
Confidence 1 56799998874 457764
No 27
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=97.97 E-value=1.4e-05 Score=63.45 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=46.3
Q ss_pred EEEEEecCCchHHHHHHHCCC--CC--CCcCCCCCcccCCCccEEEEcCCCccCCCCCCHHHHHhhhcccccccCCCCcE
Q 031532 56 KRPIIGLAGQTLLKALTNSGL--ID--PASHRLEEIDACSAECEVNIAQEWLDRLPPRSYEEEYVLKRNSRARVLNLHSR 131 (158)
Q Consensus 56 ~~~v~~~~G~tLlea~~~~gi--i~--~~~~~CgG~g~CGatC~V~V~~g~~~~l~~~t~~E~~~L~~~~~~~~~~~~sR 131 (158)
.++|++.+|+|||++|++.|+ +. ...++| +.|.|| +|.|.| +|. .+
T Consensus 25 ~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c-~~G~Cg-~C~v~v-~G~---------------------------~~ 74 (243)
T 1kf6_B 25 FYEVPYDATTSLLDALGYIKDNLAPDLSYRWSC-RMAICG-SCGMMV-NNV---------------------------PK 74 (243)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCC-SSSSSC-CCEEEE-TTE---------------------------EE
T ss_pred EEEEecCCCChHHHHHHHcCcccCCCcccccCC-CCCcCC-CCEeEE-CCE---------------------------EE
Confidence 367888999999999999883 11 123579 689998 999998 341 16
Q ss_pred EeeceEEecCCCccEEE
Q 031532 132 LGCQVVLTHDLEGMVVA 148 (158)
Q Consensus 132 LACQi~l~~dldG~vI~ 148 (158)
|||++.+.+..++|+|+
T Consensus 75 ~aC~~~~~~~~~~~~i~ 91 (243)
T 1kf6_B 75 LACKTFLRDYTDGMKVE 91 (243)
T ss_dssp EGGGCBGGGCTTCEEEE
T ss_pred eeeeeEHhhCCCcEEEE
Confidence 78888887664556775
No 28
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=97.94 E-value=2.4e-05 Score=59.73 Aligned_cols=43 Identities=26% Similarity=0.374 Sum_probs=36.2
Q ss_pred CCCEEEEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEE
Q 031532 53 DGQKRPIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 53 ~G~~~~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V 98 (158)
+|+..++++.+|+|||++++++ |+. ...+.|+ .|.|| .|.|.|
T Consensus 17 ng~~~~~~v~~~~tlL~~Lr~~~gl~-g~~~~C~-~G~CG-aC~V~v 60 (168)
T 1t3q_A 17 NGKPRVFYVEPRMHLADALREVVGLT-GTKIGCE-QGVCG-SCTILI 60 (168)
T ss_dssp TTEEEEEEECTTSBHHHHHHHTTCCT-TSCCSCS-SSSSC-TTEEEE
T ss_pred CCEEEEEecCCCCcHHHHHHhcCCCC-ccccCCC-CCCCC-CcEEEE
Confidence 6887888899999999999997 882 2336794 79998 999999
No 29
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=97.73 E-value=7.7e-05 Score=56.96 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=38.8
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~ 99 (158)
++++++ +|+.++++++++++||+++++. |+. .....|+ .|.|| .|-|.|.
T Consensus 5 ~i~~~v---NG~~~~~~v~~~~tLLd~LR~~lglt-g~k~gC~-~G~CG-aCtV~vd 55 (163)
T 1ffv_A 5 IITVNV---NGKAQEKAVEPRTLLIHFLREELNLT-GAHIGCE-TSHCG-ACTVDID 55 (163)
T ss_dssp EEEEEE---TTEEEEEEECTTCBHHHHHHHTSCCT-TSCCCCS-SSCSC-TTEEEET
T ss_pred eEEEEE---CCEEEEEecCCCCcHHHHHHhcCCCc-ccccCCC-CCCCC-CCEEEEC
Confidence 344444 7888889999999999999984 662 3346795 79998 9999993
No 30
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.72 E-value=8.1e-05 Score=56.73 Aligned_cols=49 Identities=22% Similarity=0.389 Sum_probs=38.7
Q ss_pred EEEECCCCCEEEEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEc
Q 031532 47 LFAIDPDGQKRPIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 47 Vt~v~~~G~~~~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~ 99 (158)
|+|. -+|+.+++++.++++|+++++++ |+. .....|+ .|.|| .|.|.|.
T Consensus 6 i~~~-vNG~~~~v~v~p~~tLLd~LR~~lglt-gtk~gC~-~G~CG-ACtV~vd 55 (160)
T 3hrd_D 6 INLN-LNGEARSIVTEPNKRLLDLLREDFGLT-SVKEGCS-EGECG-ACTVIFN 55 (160)
T ss_dssp EEEE-ETTEEEEEEECSSSBHHHHHHTTSCCT-TSCCSSS-SSSSC-TTEEEET
T ss_pred EEEE-ECCEEEEEecCCCCCHHHHHHHhcCCC-ccccccC-CCCCC-CCEEEEC
Confidence 4443 37888889999999999999986 762 2335794 89999 9999994
No 31
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=97.71 E-value=8.6e-05 Score=56.84 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=36.3
Q ss_pred CCCEEEEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEc
Q 031532 53 DGQKRPIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 53 ~G~~~~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~ 99 (158)
+|+.+++++.++++||+++++. |+. .....|+ .|.|| .|-|.|.
T Consensus 11 NG~~~~~~v~~~~tLLd~LR~~lgl~-g~k~gC~-~G~CG-aCtV~vd 55 (166)
T 1n62_A 11 NGHPVEALVEPRTLLIHFIREQQNLT-GAHIGCD-TSHCG-ACTVDLD 55 (166)
T ss_dssp TTEEEEEEECTTCBHHHHHHHTSCCT-TSCCCCS-SSCSC-TTEEEET
T ss_pred CCEEEEEecCCCCcHHHHHHHcCCCC-ccccCCC-CCCCC-CCEEEEC
Confidence 7888889999999999999985 662 3345794 79998 9999993
No 32
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=97.63 E-value=0.00012 Score=55.65 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=36.3
Q ss_pred CCCEEEEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEE
Q 031532 53 DGQKRPIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 53 ~G~~~~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V 98 (158)
+|+.+++++.+|++||+++++. |+. .....|+ .|.|| .|-|.|
T Consensus 10 NG~~~~v~~~~~~tLL~~Lr~~~gl~-g~k~gC~-~G~CG-aCtV~v 53 (161)
T 1rm6_C 10 NGRAREDLVPDNMLLLDYLRETVGLT-GTKQGCD-GGECG-ACTVLV 53 (161)
T ss_dssp TTEEEEEEEETTCBHHHHHHHTTCCT-TSCCCSS-SSSSC-TTEEEE
T ss_pred CCEEEEEecCCcCcHHHHHHHcCCCc-ccccCCC-CCCCC-CCEEEE
Confidence 7988888899999999999987 663 3346795 79999 999999
No 33
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=96.91 E-value=0.0013 Score=52.00 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=32.4
Q ss_pred EEEEEecCCchHHHHHHHCCC--C--CCCcCCCCCcccCCCccEEEEcCC
Q 031532 56 KRPIIGLAGQTLLKALTNSGL--I--DPASHRLEEIDACSAECEVNIAQE 101 (158)
Q Consensus 56 ~~~v~~~~G~tLlea~~~~gi--i--~~~~~~CgG~g~CGatC~V~V~~g 101 (158)
..+|++.+|+|||+++++.+. . ....++|+ .|.|| +|.|.| +|
T Consensus 25 ~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~-~g~Cg-~C~v~i-~G 71 (241)
T 2bs2_B 25 EYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCR-AGICG-SCGMMI-NG 71 (241)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSS-SSSSC-TTEEEE-TT
T ss_pred EEEEeCCCCChHHHHHHHhchhcCCCCccCCCCC-CCCCC-CCEeEE-CC
Confidence 356788899999999997642 1 12235795 89998 999999 55
No 34
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=96.76 E-value=0.0017 Score=51.85 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=37.8
Q ss_pred CCcceEEEEECCC----C-----CEEEEEecC-CchHHHHHHHCCC--CC--CCcCCCCCcccCCCccEEEE
Q 031532 41 ADRIVHLFAIDPD----G-----QKRPIIGLA-GQTLLKALTNSGL--ID--PASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 41 ~~~m~~Vt~v~~~----G-----~~~~v~~~~-G~tLlea~~~~gi--i~--~~~~~CgG~g~CGatC~V~V 98 (158)
..++++|.+.-.+ + +..+|++.+ |.|||+++.+.++ +. ...+.| +.|.|| .|-|.|
T Consensus 8 ~~~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c-~~g~Cg-~C~v~i 77 (252)
T 2h88_B 8 TSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSC-REGICG-SCAMNI 77 (252)
T ss_dssp CCCEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSC-SSSSSC-TTEEEE
T ss_pred CCceEEEEEEEeCCCCCCCCceEEEEEEecCCCCChHHHHHHHhCcccCCCccccCCC-CCCCCC-CCEEEE
Confidence 3456666655432 2 235667777 9999999998763 21 222478 589998 999998
No 35
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=96.51 E-value=0.0034 Score=47.93 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=38.2
Q ss_pred ceEEEEECCCCCEE-EEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEcC
Q 031532 44 IVHLFAIDPDGQKR-PIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 44 m~~Vt~v~~~G~~~-~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
++++++ +|+.+ .+++.++.+|++++++. |+. .....| |.|.|| .|-|.|..
T Consensus 4 ~i~~~v---NG~~~~~~~~~p~~~Ll~~LR~~lglt-GtK~GC-~~G~CG-ACTVlvd~ 56 (164)
T 3nvw_A 4 ELVFFV---NGKKVVEKNADPETTLLAYLRRKLGLR-GTKLGC-GEGGCG-ACTVMLSK 56 (164)
T ss_dssp CEEEEE---TTEEEEETTCCTTCBHHHHHHHTSCCT-TSCCSC-SSSSSC-TTEEEEEE
T ss_pred eEEEEE---CCEEEEEecCCCCCCHHHHHHHHcCCC-CcCCCc-CCCCCC-CCEEEEcc
Confidence 455554 68654 46789999999999986 762 334579 589999 99999963
No 36
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=96.36 E-value=0.0052 Score=53.63 Aligned_cols=44 Identities=30% Similarity=0.478 Sum_probs=36.3
Q ss_pred CCCEEEE-EecCCchHHHHHHHCCCCCCCcCCCCCcccCCCccEEEEc
Q 031532 53 DGQKRPI-IGLAGQTLLKALTNSGLIDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 53 ~G~~~~v-~~~~G~tLlea~~~~gii~~~~~~CgG~g~CGatC~V~V~ 99 (158)
+|+.+++ ++.++.+|++++++.|+ .....+|+ .|.|| .|-|.|.
T Consensus 8 Ng~~~~~~~~~~~~~Ll~~Lr~~~l-~g~k~gC~-~G~CG-aCtV~v~ 52 (462)
T 2w3s_A 8 NGETRRVRIEDPTQSLLEWLRAEGL-TGTKEGCN-EGDCG-ACTVMIR 52 (462)
T ss_dssp TTEEEEEECSCTTCBHHHHHHHTTC-TTSCCSCS-SSSSC-TTEEEEE
T ss_pred CCEEEEEecCCCCCcHHHHHHHcCC-CccCCCCC-CCCcC-CcEEEEE
Confidence 7888888 78999999999996676 34456895 79999 9999993
No 37
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=96.24 E-value=0.0058 Score=48.08 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=31.4
Q ss_pred EEEEecC--CchHHHHHHHCCC---CCCCcCCCCCcccCCCccEEEE
Q 031532 57 RPIIGLA--GQTLLKALTNSGL---IDPASHRLEEIDACSAECEVNI 98 (158)
Q Consensus 57 ~~v~~~~--G~tLlea~~~~gi---i~~~~~~CgG~g~CGatC~V~V 98 (158)
++|++.+ |+|||++|++.++ .....++|+ .|.|| .|-|.|
T Consensus 23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~-~g~Cg-~C~v~v 67 (238)
T 2wdq_B 23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCR-EGVCG-SDGLNM 67 (238)
T ss_dssp EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSS-SSSSC-TTEEEE
T ss_pred EEeecCCCCCChHHHHHHHhcccCCCccccccCC-CCCCC-CCEEEE
Confidence 5678888 9999999998872 112335795 79998 999999
No 38
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=96.20 E-value=0.0063 Score=50.03 Aligned_cols=42 Identities=26% Similarity=0.315 Sum_probs=31.1
Q ss_pred EEEEEecC-CchHHHHHHHCCC-CC---CCcCCCCCcccCCCccEEEEc
Q 031532 56 KRPIIGLA-GQTLLKALTNSGL-ID---PASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 56 ~~~v~~~~-G~tLlea~~~~gi-i~---~~~~~CgG~g~CGatC~V~V~ 99 (158)
..+|++.+ |.|||+++++.+. .+ ....+|+ .|.|| .|-|.|.
T Consensus 56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~-~G~CG-sC~V~In 102 (282)
T 3vr8_B 56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCR-EGICG-SCAMNIA 102 (282)
T ss_pred EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCC-CCCCC-CCEEEEC
Confidence 46677788 9999999998654 11 2224685 69998 9999984
No 39
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=96.16 E-value=0.0091 Score=56.06 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=40.5
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~ 99 (158)
|.+|+|. -+|+.+++++.++++||+++++. |+. ....+|+ .|.|| .|-|.|.
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~-g~k~gC~-~g~CG-aCtv~vd 53 (907)
T 1vlb_A 1 MIQKVIT-VNGIEQNLFVDAEALLSDVLRQQLGLT-GVKVGCE-QGQCG-ACSVILD 53 (907)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCT-TSCCSSS-SSSSC-TTEEEET
T ss_pred CceEEEE-ECCEEEEEecCCCChHHHHHHHhcCCC-eecCCCC-CCCcC-ccEEEEC
Confidence 3445654 38988999999999999999985 652 3346795 79999 9999993
No 40
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.00 E-value=0.0081 Score=56.41 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=39.7
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEc
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~ 99 (158)
.+|+|. -+|+.+++++.++++||+++++. |+. ....+|+ .|.|| .|-|.|.
T Consensus 2 ~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~-g~k~gC~-~G~CG-aCtv~vd 53 (907)
T 1dgj_A 2 ETKTLI-VNGMARRLLVSPNDLLVDVLRSQLQLT-SVKVGCG-KGQCG-ACTVILD 53 (907)
T ss_dssp EEEECE-ETTBCCEEEECTTCBHHHHHHHTTCCT-TSCCSSS-SSSSC-TTEEEET
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCC-ccCCCCC-CCCcC-ceEEEEC
Confidence 345554 37888899999999999999985 552 3346795 79999 9999993
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=92.60 E-value=0.16 Score=43.59 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=31.9
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCCCCCCcC-CC-CCccc--CCCccEEEEc
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLIDPASH-RL-EEIDA--CSAECEVNIA 99 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii~~~~~-~C-gG~g~--CGatC~V~V~ 99 (158)
+++++| || +.+++.+|+||+++++++|+. ..++ .+ ...|. |+ .|.|.|.
T Consensus 15 ~v~~~~---dg--~~~~~~~g~ti~~a~~~~g~~-~~~~~~~~~p~g~~~~~-~c~v~v~ 67 (493)
T 1y56_A 15 KVTIYF---EG--KELEAYEGEKLPVALLANEIY-WLTTSNEGRKRGAFTFG-PVPMTVN 67 (493)
T ss_dssp EEEEEE---TT--EEEEEETTCBHHHHHHHTTCC-CCEECTTSCEECSSSSS-CCEEBSS
T ss_pred eEEEEE---CC--EEEEecCCCHHHHHHHHCCCc-eecCCCCCCCCccccce-EEEEEEC
Confidence 455554 77 578999999999999999992 1111 01 11222 65 8888763
No 42
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=91.05 E-value=0.3 Score=47.70 Aligned_cols=44 Identities=25% Similarity=0.310 Sum_probs=34.8
Q ss_pred CCCEEEE-EecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEc
Q 031532 53 DGQKRPI-IGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 53 ~G~~~~v-~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~ 99 (158)
+|+.+++ .+.+..+||+.++++ |+- .....| |.|.|| -|-|.|.
T Consensus 11 Ng~~~~~~~~~p~~~ll~~LR~~~~lt-gtk~gC-~~g~CG-aCtV~~~ 56 (1332)
T 3unc_A 11 NGKKVVEKNADPETTLLAYLRRKLGLR-GTKLGC-GEGGCG-ACTVMLS 56 (1332)
T ss_dssp TTEEEEETTCCTTCBHHHHHHHTSCCT-TSCCSC-SSSSSC-TTEEEEE
T ss_pred CCEEEEeecCCCCCCHHHHHhhhcCCC-CcCCCc-CCCCCC-CcEEEEe
Confidence 6876665 689999999999985 762 333579 589999 9999994
No 43
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.56 E-value=0.8 Score=31.83 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=27.4
Q ss_pred CCCCCcceEEEEECCCCCEEEEEecCCchHHHH
Q 031532 38 AKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 38 ~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
..-..+|++|++.+..|+..++++.+..|+.++
T Consensus 22 ~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~l 54 (100)
T 1uh6_A 22 SEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDL 54 (100)
T ss_dssp CSSCCCEEEEEEECSSSSCEEEEEETTSBHHHH
T ss_pred CCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHH
Confidence 344567899999998898899999999998764
No 44
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=86.17 E-value=1 Score=31.01 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=25.7
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEEecCCchHHHH
Q 031532 36 PSAKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 36 ~~~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
....-...|+.|.+.+..|....|++.+..|+.+.
T Consensus 13 ~~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~L 47 (93)
T 3plu_A 13 GLVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDF 47 (93)
T ss_dssp -------CEEEEEEECTTSCEEEEEEETTSBHHHH
T ss_pred cccCCCCceEEEEEECCCCCEEEEEECCcCHHHHH
Confidence 44555667999999999999999999999999864
No 45
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=84.20 E-value=1.9 Score=30.02 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=29.3
Q ss_pred CCcceEEEEECCCCCEEE--EEecCCchHHHHHHHCCCC
Q 031532 41 ADRIVHLFAIDPDGQKRP--IIGLAGQTLLKALTNSGLI 77 (158)
Q Consensus 41 ~~~m~~Vt~v~~~G~~~~--v~~~~G~tLlea~~~~gii 77 (158)
-.|.++|++++.+|.... |. ..|++|++++.++..+
T Consensus 5 g~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~~v 42 (101)
T 3u7z_A 5 GEKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESENLV 42 (101)
T ss_dssp CCEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTTCE
T ss_pred ceeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcCcc
Confidence 457889999998887644 55 7899999999999864
No 46
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=83.34 E-value=1.1 Score=30.82 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=26.2
Q ss_pred EEEEECCCCCEEEEEecCCchHHHHHH----HCCC
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKALT----NSGL 76 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea~~----~~gi 76 (158)
.|+++.++|.+.+|++.++.+|.|++. ..|+
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl 45 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDF 45 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 588888999999999999999988765 4566
No 47
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=81.33 E-value=2.7 Score=39.27 Aligned_cols=52 Identities=21% Similarity=0.146 Sum_probs=36.0
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHHHCCCC-CCCc--------CCCCCcccCCCccEEEEc
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGLI-DPAS--------HRLEEIDACSAECEVNIA 99 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gii-~~~~--------~~CgG~g~CGatC~V~V~ 99 (158)
++-.|+|. .|| +++++.+|+||.+|++.+|+. ...+ ..|+ .+.|. .|.|.|.
T Consensus 19 ~~~~~~~~-~dG--~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~-~~~c~-~~~v~v~ 79 (965)
T 2gag_A 19 REEALSLT-VDG--AKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAA-GVEEP-NALVTVS 79 (965)
T ss_dssp EEEEEEEE-ETT--EEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCS-STTCC-SCEEEEC
T ss_pred CCCeEEEE-ECC--EEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccC-CccCC-ceEEEEc
Confidence 34445554 378 678999999999999999981 1111 2353 35686 9999997
No 48
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=79.59 E-value=2 Score=41.91 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=36.2
Q ss_pred EEEECCCCCEEEE-EecCCchHHHHHHHC-CCCCCCcCCCCCcccCCCccEEEEcC
Q 031532 47 LFAIDPDGQKRPI-IGLAGQTLLKALTNS-GLIDPASHRLEEIDACSAECEVNIAQ 100 (158)
Q Consensus 47 Vt~v~~~G~~~~v-~~~~G~tLlea~~~~-gii~~~~~~CgG~g~CGatC~V~V~~ 100 (158)
|+|. -+|++.++ .+.+..|||+-++++ ++ -.-...|+ .|.|| -|-|.|..
T Consensus 10 l~F~-vNG~~v~~~~~~p~~tLl~~LR~~~~l-tGTK~gC~-EG~CG-ACtV~v~~ 61 (1335)
T 3zyv_A 10 LIFF-VNGKKVTERNADPEVNLLFYLRKVIRL-TGTKYGCG-GGDCG-ACTVMISR 61 (1335)
T ss_dssp EEEE-ETTEEEEESSCCTTCBHHHHHHHTTCC-TTSCCSCS-SSSSC-TTEEEEEE
T ss_pred EEEE-ECCEEEEeCCCCcCccHHHHHhccCCC-cccccccC-CCCCc-ceEEEEee
Confidence 5554 36865555 367899999999985 66 23335795 79999 99999954
No 49
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=78.82 E-value=4 Score=28.16 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.5
Q ss_pred CCCCEEEEEecCCchHHHHHHHC
Q 031532 52 PDGQKRPIIGLAGQTLLKALTNS 74 (158)
Q Consensus 52 ~~G~~~~v~~~~G~tLlea~~~~ 74 (158)
|++++..|++.+|.||.+++.++
T Consensus 25 PNqQrT~V~VrpG~tlrdAL~Ka 47 (95)
T 2l05_A 25 PNKQRTVVPARCGVTVRDSLKKA 47 (95)
T ss_dssp TTTEEEEEECCTTCBHHHHHHHH
T ss_pred CCCCeEEEEecCCcCHHHHHHHH
Confidence 78888889999999999988643
No 50
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=78.05 E-value=2.2 Score=32.33 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=30.6
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHHHHCCC
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi 76 (158)
|.+|.|+.+-|...+++++.++.||++++.+|-
T Consensus 7 ml~i~f~t~LG~~V~vdve~~~~~l~v~R~yG~ 39 (184)
T 3kdv_A 7 MLHIEFITDLGAKVTVDVESADKLLDVQRQYGR 39 (184)
T ss_dssp CEEEEEECTTCCEEEEEESSGGGHHHHHHHHHT
T ss_pred eEEEEEecCCCceEEEecCCHHHHHHHHHHhhh
Confidence 899999999999999999999999999998764
No 51
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=77.18 E-value=2.9 Score=28.37 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=22.3
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHHH
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALTN 73 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~ 73 (158)
.++.+.+ |++++-.|++.+|.||.+++.+
T Consensus 8 ~~irvhL--Pn~QrT~V~VrpG~tlrdaL~K 36 (86)
T 1wxm_A 8 GTVKVYL--PNKQRTVVTVRDGMSVYDSLDK 36 (86)
T ss_dssp SEEEEEC--SSSCEEEEECCSSCBSHHHHHH
T ss_pred ceEEEEC--CCCCeEEEEecCCcCHHHHHHH
Confidence 3444444 7888888999999999888764
No 52
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=73.54 E-value=3.8 Score=28.35 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=24.9
Q ss_pred CCCCCcceEEEEECCCCCEEEEEecCCchHHHHHHH
Q 031532 38 AKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKALTN 73 (158)
Q Consensus 38 ~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~~ 73 (158)
+-.+.+.+.+.+ |++++-.|++.+|.||.+++.+
T Consensus 9 ~~~~~~~irvhL--PNqQrT~V~VrpG~tlrdaL~K 42 (96)
T 3ny5_A 9 SHMQKPIVRVFL--PNKQRTVVPARCGVTVRDSLKK 42 (96)
T ss_dssp -CCSSCEEEEEE--TTTEEEEEECCTTCBHHHHHHH
T ss_pred hhhhhCEEEEEC--CCCceEEEEecCCcCHHHHHHH
Confidence 334555565655 7888788999999999988864
No 53
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=72.71 E-value=7.5 Score=25.29 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=24.1
Q ss_pred CcceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 42 DRIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 42 ~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
...++|++...+|....+++.+..|+.+.=
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK 44 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVK 44 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHH
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHH
Confidence 445678888888988899999999988743
No 54
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.81 E-value=12 Score=25.08 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=26.2
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 35 APSAKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 35 ~~~~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
++++.-.+.+++|++....|. ..+++....|+.++-
T Consensus 8 ~~~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK 43 (106)
T 1wx7_A 8 SPAPVQDPHLIKVTVKTPKDK-EDFSVTDTCTIQQLK 43 (106)
T ss_dssp CCSCCCCSSEEEEEEECSSCE-EEEEEETTCCHHHHH
T ss_pred CCCCCCCCceEEEEEEeCCCc-EEEEECCCCcHHHHH
Confidence 334444577889999877774 689999999987743
No 55
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=65.38 E-value=18 Score=25.42 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=27.6
Q ss_pred CccccCCCCCCCCcceEEEEECCCCCEEEEEecCCchHHHH
Q 031532 30 SSATAAPSAKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 30 ~~~~~~~~~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
||+++.+..- ....+.|+|....|..+++++.+..|+.++
T Consensus 3 ~~~~~~~~~~-~~~~m~I~vKtl~G~t~~lev~~s~TV~~l 42 (116)
T 1wgh_A 3 SGSSGMSSHV-PADMINLRLILVSGKTKEFLFSPNDSASDI 42 (116)
T ss_dssp CCCCCCCCCC-CSSSEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CccccccCCC-CCCeEEEEEEeCCCCEEEEEECCcCHHHHH
Confidence 4444432222 233577888888899999999999988663
No 56
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=65.10 E-value=13 Score=26.50 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=25.6
Q ss_pred CCCCcceEEEEECCCCCEEEEEecCCchHHHH
Q 031532 39 KVADRIVHLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 39 ~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
.....+++|+|....|..+++++.+..|+.++
T Consensus 12 ~~~~~~m~I~vktl~G~~~~lev~~s~TV~~l 43 (125)
T 2gow_A 12 NVPADMINLRLILVSGKTKEFLFSPNDSASDI 43 (125)
T ss_dssp SCCTTCEEEEEECTTSCEEEEEECTTSBHHHH
T ss_pred CCCCCeEEEEEEeCCCCEEEEEeCCccHHHHH
Confidence 33445688999888899999999999998654
No 57
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=64.43 E-value=6.9 Score=26.00 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=23.2
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 36 PSAKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 36 ~~~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
+.+.-.+..++|++...+|....|++.+..|+.+.=
T Consensus 14 ~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK 49 (98)
T 4hcn_B 14 ENLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVK 49 (98)
T ss_dssp --------CCEEEEEETTCCEEEEECCTTCBHHHHH
T ss_pred CCCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 334445566788888778988899999999988743
No 58
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=60.14 E-value=9.5 Score=25.28 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.3
Q ss_pred CCCCEEEEEecCCchHHHHHHHC
Q 031532 52 PDGQKRPIIGLAGQTLLKALTNS 74 (158)
Q Consensus 52 ~~G~~~~v~~~~G~tLlea~~~~ 74 (158)
|++++..|++.+|.||.+++.++
T Consensus 9 Pn~QrT~V~VrpG~tlrdaL~Ka 31 (77)
T 1c1y_B 9 PNKQRTVVNVRNGMSLHDCLMKA 31 (77)
T ss_dssp TTTEEEEEECCTTCBHHHHHHHH
T ss_pred CCCceEEEEecCCcCHHHHHHHH
Confidence 78877789999999999988643
No 59
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=59.77 E-value=12 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=21.6
Q ss_pred EEEECCCCCEEEEEecCCchHHHHHHHC
Q 031532 47 LFAIDPDGQKRPIIGLAGQTLLKALTNS 74 (158)
Q Consensus 47 Vt~v~~~G~~~~v~~~~G~tLlea~~~~ 74 (158)
|.+.-|++++-.|++.+|.||.|++.++
T Consensus 21 ir~hLPNqQrT~V~VrpG~tlrdaL~Ka 48 (107)
T 1rrb_A 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKA 48 (107)
T ss_dssp EEEECTTTCCEEEECCTTCBHHHHHHHH
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHH
Confidence 3344478888889999999999988643
No 60
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=56.38 E-value=31 Score=22.34 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCEEEEEecCCchHHHH
Q 031532 42 DRIVHLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 42 ~~m~~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
..+++|++... |....+++.+..|+.+.
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~L 42 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRF 42 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHH
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHH
Confidence 35788888876 88888999999988764
No 61
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=55.30 E-value=31 Score=21.67 Aligned_cols=31 Identities=6% Similarity=-0.087 Sum_probs=24.5
Q ss_pred CCcceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 41 ADRIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 41 ~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
.+..++|++...+|....+++.+..|+.+.=
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK 39 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIK 39 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHH
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHH
Confidence 3446678888888988899999999887643
No 62
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.86 E-value=28 Score=22.90 Aligned_cols=31 Identities=19% Similarity=0.034 Sum_probs=23.1
Q ss_pred CCCcceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 40 VADRIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 40 ~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
..+++++|++. ..|..+.|++.+..|+.+.=
T Consensus 13 ~~~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK 43 (95)
T 1v86_A 13 VGKELVDLKII-WNKTKHDVKVPLDSTGSELK 43 (95)
T ss_dssp CCCCCEEEEEE-ETTEEEEEEECTTSBHHHHH
T ss_pred CCCceEEEEEE-ECCEEEEEEECCCCcHHHHH
Confidence 34567778876 45777889999999987643
No 63
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=49.34 E-value=15 Score=26.67 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=23.1
Q ss_pred CCCCCCcceEEEEECCCCCEEEEEecCCchHHHH
Q 031532 37 SAKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 37 ~~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
.+.....+.+|++...+|....+++.+..|+.+.
T Consensus 13 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~l 46 (172)
T 3u30_A 13 GLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENV 46 (172)
T ss_dssp ------CCEEEEEEETTTEEEEEEECTTCBHHHH
T ss_pred CCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 3444455667888777888888999999998873
No 64
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=48.78 E-value=9.1 Score=29.53 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=20.4
Q ss_pred hHHHHHHHCCC-----CCCCcCCCCCcccCCCccEEEEc
Q 031532 66 TLLKALTNSGL-----IDPASHRLEEIDACSAECEVNIA 99 (158)
Q Consensus 66 tLlea~~~~gi-----i~~~~~~CgG~g~CGatC~V~V~ 99 (158)
.+.+ +.+.|+ ++ ..+.| |.|.|+ .|.|.+.
T Consensus 205 ~v~~-l~~~gv~~~vs~e-~~m~C-G~G~C~-~C~~~~~ 239 (262)
T 1ep3_B 205 AVAK-KYDQLERLYISME-SRMAC-GIGACY-ACVEHDK 239 (262)
T ss_dssp HHHH-HTTTCSSEEEECC-CCCSS-SSSSSC-TTEEEET
T ss_pred HHHH-HHhCCCCEEEEec-ccccC-cccccc-cCCcccc
Confidence 4555 566776 22 22678 589998 9999874
No 65
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.61 E-value=33 Score=21.09 Aligned_cols=29 Identities=7% Similarity=-0.043 Sum_probs=22.4
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
.+++|++...+|....+++.+..|+.+.-
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK 34 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLK 34 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHH
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 35677777678888889999999987643
No 66
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=47.33 E-value=35 Score=23.38 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.9
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHH
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
..+|+|...+|...+|++++..|+.++
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dL 33 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDL 33 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHH
Confidence 477888888999999999999998663
No 67
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=40.73 E-value=34 Score=22.16 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=21.1
Q ss_pred EEEEECCCCCEEEEEecCCchHHHHHHHC
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKALTNS 74 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea~~~~ 74 (158)
.|.+..|+|. .++...|.|.+|+|..-
T Consensus 7 ~i~v~tP~G~--~~~lp~GaT~~D~A~~I 33 (78)
T 3hvz_A 7 EVFVFTPKGD--VISLPIGSTVIDFAYAI 33 (78)
T ss_dssp EEEEECTTSC--EEEEETTCBHHHHHHHH
T ss_pred eEEEECCCCC--EEEecCCCCHHHHHHHh
Confidence 3566678995 56789999999998753
No 68
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=40.28 E-value=46 Score=22.04 Aligned_cols=34 Identities=6% Similarity=0.060 Sum_probs=25.9
Q ss_pred CCCCCCcceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 37 SAKVADRIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 37 ~~~~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
.++..+.+++|++....|. ..+++.+..|+.+.-
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK 48 (100)
T 1yqb_A 15 VPRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLK 48 (100)
T ss_dssp CCSCCTTEEEEEEECSSCE-EEEEEETTCBHHHHH
T ss_pred CCCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHH
Confidence 4555667889999887774 689999999987643
No 69
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=39.99 E-value=47 Score=20.48 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=22.8
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
+++|++...+|....+++.+..|+.+.=
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK 30 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVK 30 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHH
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHH
Confidence 4578888888988899999999988753
No 70
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=38.31 E-value=45 Score=21.16 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=22.9
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
+++|++...+|....+++.+..|+.+.=
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK 32 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFK 32 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHH
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHH
Confidence 5678887778988899999999988743
No 71
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=38.09 E-value=43 Score=20.84 Aligned_cols=28 Identities=14% Similarity=-0.102 Sum_probs=22.6
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHH
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
++++|++...+|....+++.+..|+.+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHH
Confidence 4677888777888888999999988764
No 72
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=37.69 E-value=19 Score=20.07 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=16.7
Q ss_pred EEEecCCchHHHHHHHCCC
Q 031532 58 PIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 58 ~v~~~~G~tLlea~~~~gi 76 (158)
...+.+|+||..++.++|+
T Consensus 4 ~y~V~~GDtl~~Ia~~~~~ 22 (48)
T 1e0g_A 4 TYRVRKGDSLSSIAKRHGV 22 (48)
T ss_dssp EEEECTTCCHHHHHHHHTC
T ss_pred EEEEcCCCcHHHHHHHHCc
Confidence 4578899999999999988
No 73
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=37.40 E-value=25 Score=23.62 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
|++|+|...+|....|++.+..|+.++=
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK 28 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETK 28 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHH
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 5678888778988889999999988743
No 74
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=37.19 E-value=18 Score=23.83 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCEEEEEec--CCchHHHH
Q 031532 44 IVHLFAIDPDGQKRPIIGL--AGQTLLKA 70 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~--~G~tLlea 70 (158)
|.+|+|.+..|...+++++ +.+|+.++
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~l 29 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQI 29 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHH
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHH
Confidence 6788888888877777655 89998875
No 75
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=36.00 E-value=51 Score=21.05 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=21.5
Q ss_pred CcceEEEEECCCCCEEEEEecC-CchHHHHHHHCCC
Q 031532 42 DRIVHLFAIDPDGQKRPIIGLA-GQTLLKALTNSGL 76 (158)
Q Consensus 42 ~~m~~Vt~v~~~G~~~~v~~~~-G~tLlea~~~~gi 76 (158)
.+|++|++ ++|.. ++... |.|+++.+...+-
T Consensus 9 ~~~i~I~l--pdG~~--~~~~~~~~T~~dia~~i~~ 40 (88)
T 1wwt_A 9 SKPIKVTL--PDGKQ--VDAESWKTTPYQIACGISQ 40 (88)
T ss_dssp CCEEEEEC--TTSCE--EEEETTTCCHHHHHHHSST
T ss_pred CCCEEEEE--CCCCE--EEcccCCCCHHHHHHHhhh
Confidence 35666665 67854 45666 8999999987643
No 76
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=34.68 E-value=68 Score=19.63 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=22.3
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
...|++...+|....+++.+..|+.+.=
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK 31 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLK 31 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHH
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHH
Confidence 3467777788988899999999987643
No 77
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=34.45 E-value=52 Score=20.98 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=22.2
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
+++|++...+|....+++.+..|+.+.-
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK 31 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLK 31 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHH
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHH
Confidence 5678877778888889999999887743
No 78
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=33.55 E-value=74 Score=20.13 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=22.6
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHCCC
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi 76 (158)
++|++. .....++++.+|.|+.+.+.+.|+
T Consensus 3 v~Vkl~--g~~~~~~ev~~g~Tv~dLL~~Lgl 32 (74)
T 2l32_A 3 VTVEVV--GEETSEVAVDDDGTYADLVRAVDL 32 (74)
T ss_dssp EEEECS--SSSEEEEECSTTCSHHHHHHTTCC
T ss_pred EEEEEe--CccceeEEcCCCCcHHHHHHHcCC
Confidence 445543 223456899999999999999999
No 79
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=32.56 E-value=48 Score=20.15 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=19.8
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHHHHCCC
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~~~~gi 76 (158)
++|++ ++|+ .+++..|.|+.+.+...+.
T Consensus 3 i~i~~--p~g~--~~~~~~g~T~~dla~~i~~ 30 (73)
T 2kmm_A 3 VMVFT--PKGE--IKRLPQGATALDFAYSLHS 30 (73)
T ss_dssp EEEEC--TTCC--EEEECTTCBHHHHHHHHCS
T ss_pred EEEEc--CCCC--EEEcCCCCcHHHHHHHHhh
Confidence 44443 6775 4677889999999986543
No 80
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.14 E-value=1e+02 Score=20.97 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=22.9
Q ss_pred EEEECCCCCEEEEEecCCchHHHHHHHC
Q 031532 47 LFAIDPDGQKRPIIGLAGQTLLKALTNS 74 (158)
Q Consensus 47 Vt~v~~~G~~~~v~~~~G~tLlea~~~~ 74 (158)
|+|...||..+.|.+.++.|..|+++.-
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L 39 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEML 39 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHH
Confidence 4444578999999999999999998743
No 81
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=31.88 E-value=61 Score=20.38 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=23.3
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
.+++|++...+|....+++.+..|+.+.=
T Consensus 16 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK 44 (88)
T 4eew_A 16 DSLEVLVKTLDSQTRTFIVGAQMNVKEFK 44 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHH
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHH
Confidence 35678888778988889999999988743
No 82
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.97 E-value=64 Score=20.14 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=22.5
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
.+++|++...+|....+++.+..|+.+.-
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK 34 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLK 34 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHH
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHH
Confidence 35677777777887889999999987743
No 83
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=29.42 E-value=69 Score=20.90 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=24.1
Q ss_pred CCcceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 41 ADRIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 41 ~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
...+++|++.+.+|....+++.+..|+.++-
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK 48 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLK 48 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHH
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 3446789998889988899999998876643
No 84
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=29.35 E-value=69 Score=20.56 Aligned_cols=30 Identities=3% Similarity=-0.120 Sum_probs=23.3
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHHH
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKALT 72 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~~ 72 (158)
.+++|++...+|....+++.+..|+.++=.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~ 35 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKS 35 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHH
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 456777766778778899999999988544
No 85
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=29.13 E-value=70 Score=19.56 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=21.4
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHH
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKA 70 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea 70 (158)
++|++.+.+|....+++.+..|+.++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~l 29 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKL 29 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHH
T ss_pred EEEEEECCCCCEEEEEECCCChHHHH
Confidence 56888888898888999999887664
No 86
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=28.68 E-value=62 Score=20.96 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=19.4
Q ss_pred CCCcceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 40 VADRIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 40 ~~~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
....+++|++.. |....+++.+..|+.+.-
T Consensus 15 ~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK 44 (93)
T 2l7r_A 15 VPRGSMQLFVRA--QELHTFEVTGQETVAQIK 44 (93)
T ss_dssp -----CEEEEES--SSEEEEECCSSCBHHHHH
T ss_pred CCCCcEEEEEEC--CCEEEEEeCCCCcHHHHH
Confidence 333456777775 777889999999887643
No 87
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=28.46 E-value=51 Score=20.37 Aligned_cols=28 Identities=7% Similarity=-0.048 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
+++|++...+|....+++.+..|+.+.-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK 30 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVK 30 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHH
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 3567777778888899999999888753
No 88
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=26.08 E-value=94 Score=18.41 Aligned_cols=26 Identities=8% Similarity=-0.105 Sum_probs=20.4
Q ss_pred EEEEECCCCCEEEEEecCCchHHHHH
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
+|++...+|....+++.+..|+.+.-
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK 27 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIK 27 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHH
Confidence 46677778888889999999887643
No 89
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=25.69 E-value=1.4e+02 Score=20.28 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=20.1
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHH
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLK 69 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLle 69 (158)
.-++|.+.+ +|....|.+....+|-.
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~k 55 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRR 55 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHH
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHH
Confidence 456888888 89888899988876433
No 90
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.69 E-value=1.1e+02 Score=19.00 Aligned_cols=29 Identities=14% Similarity=-0.050 Sum_probs=21.9
Q ss_pred cceEEEEECCCC-CEEEE-EecCCchHHHHH
Q 031532 43 RIVHLFAIDPDG-QKRPI-IGLAGQTLLKAL 71 (158)
Q Consensus 43 ~m~~Vt~v~~~G-~~~~v-~~~~G~tLlea~ 71 (158)
.+++|++...+| ....+ ++.+..|+.+.-
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK 36 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELR 36 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHH
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHH
Confidence 467788777778 67889 599999987743
No 91
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.56 E-value=1.7e+02 Score=20.15 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=22.9
Q ss_pred CcceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 42 DRIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 42 ~~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
+.+++|++... |....+++....|+.++=
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK 58 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFK 58 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHH
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHH
Confidence 45778888876 888889999999887643
No 92
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=24.79 E-value=1e+02 Score=20.77 Aligned_cols=34 Identities=6% Similarity=0.002 Sum_probs=23.6
Q ss_pred CCCCCcceEEEEECCCCC-EEEEEecCCchHHHHH
Q 031532 38 AKVADRIVHLFAIDPDGQ-KRPIIGLAGQTLLKAL 71 (158)
Q Consensus 38 ~~~~~~m~~Vt~v~~~G~-~~~v~~~~G~tLlea~ 71 (158)
.......++|++.+.+|. ...|.+.....|-.+.
T Consensus 19 ~~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm 53 (97)
T 2jxx_A 19 STETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLM 53 (97)
T ss_dssp -CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHH
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHH
Confidence 333455678889888884 6788998887655544
No 93
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=24.70 E-value=1.1e+02 Score=20.34 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=23.0
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
.+++|++...+|....+++.+..|+.+.-
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK 62 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVK 62 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHH
Confidence 35778888778888889999999887743
No 94
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=23.87 E-value=97 Score=19.65 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=21.4
Q ss_pred eEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 45 VHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 45 ~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
.+|++....|...++++.+..|+.++=
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK 37 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVK 37 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHH
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHH
Confidence 467776678988899999999987743
No 95
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=23.18 E-value=66 Score=19.39 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 44 IVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 44 m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
.++|++.. +|....+++.+..|+.+.-
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK 30 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFK 30 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHH
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHH
Confidence 35677766 7877889999999987743
No 96
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.97 E-value=1.1e+02 Score=19.64 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCEE--EE-EecCCchHHHH
Q 031532 44 IVHLFAIDPDGQKR--PI-IGLAGQTLLKA 70 (158)
Q Consensus 44 m~~Vt~v~~~G~~~--~v-~~~~G~tLlea 70 (158)
|.+|++.+..|... ++ ++.+..|+.++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~l 39 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEI 39 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHH
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHH
Confidence 57788887776553 47 89999987654
No 97
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.26 E-value=38 Score=21.13 Aligned_cols=20 Identities=20% Similarity=0.029 Sum_probs=17.3
Q ss_pred EEEEecCCchHHHHHHHCCC
Q 031532 57 RPIIGLAGQTLLKALTNSGL 76 (158)
Q Consensus 57 ~~v~~~~G~tLlea~~~~gi 76 (158)
.+..+.+|+||..++.++++
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~ 35 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGV 35 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTC
T ss_pred EEEEECCCCcHHHHHHHHCc
Confidence 34678999999999999988
No 98
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=21.74 E-value=33 Score=22.59 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=15.0
Q ss_pred cCCCCCCCCcceEEEEECCCCCEEEE
Q 031532 34 AAPSAKVADRIVHLFAIDPDGQKRPI 59 (158)
Q Consensus 34 ~~~~~~~~~~m~~Vt~v~~~G~~~~v 59 (158)
++..+.+.+..+.+++.+.+|....+
T Consensus 5 ~~~~~~~g~~~p~~~l~~~~g~~~~l 30 (145)
T 3erw_A 5 AQAEEKQPAVPAVFLMKTIEGEDISI 30 (145)
T ss_dssp -------CCSCCEEEEECTTSCEEEE
T ss_pred ccccccCCCcCCCceeecCCCCEEeH
Confidence 34567788889999999988865433
No 99
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=21.29 E-value=1e+02 Score=18.19 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=19.6
Q ss_pred EEEEECCCCCEEEEEecCCchHHHHH
Q 031532 46 HLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 46 ~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
+|++...+|....+++.+..|+.+.-
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK 27 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVK 27 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 45665567888889999999887743
No 100
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=21.24 E-value=1.2e+02 Score=20.14 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=20.5
Q ss_pred CcceEEEEECCCCC--EEEEEecCCchHHHH
Q 031532 42 DRIVHLFAIDPDGQ--KRPIIGLAGQTLLKA 70 (158)
Q Consensus 42 ~~m~~Vt~v~~~G~--~~~v~~~~G~tLlea 70 (158)
...++|+|...+|. ..+|++.+..|+.++
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~L 51 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKL 51 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHH
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHH
Confidence 34577888877776 457888999988763
No 101
>1oqj_A Glucocorticoid modulatory element binding protein-1; SAND domain, alpha-beta fold, KDWK motif, zinc-binding motif, DNA binding protein; 1.55A {Homo sapiens} SCOP: d.217.1.1
Probab=20.76 E-value=69 Score=21.94 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=16.3
Q ss_pred CchHHHHHHHCCCCCCCcCCCCCcccCCCccE
Q 031532 64 GQTLLKALTNSGLIDPASHRLEEIDACSAECE 95 (158)
Q Consensus 64 G~tLlea~~~~gii~~~~~~CgG~g~CGatC~ 95 (158)
|.+|. .+.+.|+++...|.| .|.++|+
T Consensus 68 G~~L~-~Lme~g~L~~~~h~~----~Cs~~c~ 94 (97)
T 1oqj_A 68 GIMLR-KMMDSGQIDFYQHDK----VCSNTCR 94 (97)
T ss_dssp TEEHH-HHHHTTSSCCTTTTT----CCCSCCC
T ss_pred CeEHH-HHHHCCcccccCcCC----ccccccc
Confidence 44555 555678865544555 4666775
No 102
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=20.73 E-value=28 Score=17.95 Aligned_cols=12 Identities=33% Similarity=0.246 Sum_probs=7.7
Q ss_pred CCCccccccccc
Q 031532 16 LPSLSPLSKSLT 27 (158)
Q Consensus 16 ~~~~~~~~~~~~ 27 (158)
|++||+++.++|
T Consensus 2 qgslptfrsslf 13 (26)
T 2bp3_S 2 RGSLPTFRSSLF 13 (26)
T ss_pred CccccchhheEE
Confidence 567787774443
No 103
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=20.65 E-value=1.5e+02 Score=19.81 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=23.5
Q ss_pred cceEEEEECCCCCEEEEEecCCchHHHHH
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAGQTLLKAL 71 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G~tLlea~ 71 (158)
.+.+|++...+|....|++.+..|+.+.=
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK 62 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVK 62 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHH
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHH
Confidence 35678888888988899999999988743
No 104
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.37 E-value=1.7e+02 Score=18.41 Aligned_cols=27 Identities=4% Similarity=-0.029 Sum_probs=20.3
Q ss_pred cceEEEEECCCCCEEEEEecCC-----chHHHH
Q 031532 43 RIVHLFAIDPDGQKRPIIGLAG-----QTLLKA 70 (158)
Q Consensus 43 ~m~~Vt~v~~~G~~~~v~~~~G-----~tLlea 70 (158)
.|++|++.. .|..+.|++... .|+.+.
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~L 37 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDL 37 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHH
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHH
Confidence 478888876 477788999885 777654
Done!