Query 031533
Match_columns 158
No_of_seqs 119 out of 1174
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 15:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 5.2E-29 1.1E-33 179.6 15.4 102 46-156 31-135 (142)
2 COG0071 IbpA Molecular chapero 100.0 7.7E-29 1.7E-33 180.2 14.7 107 45-156 38-146 (146)
3 PRK10743 heat shock protein Ib 100.0 2.2E-28 4.8E-33 175.7 14.3 100 48-156 35-137 (137)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 2E-26 4.3E-31 155.3 12.0 92 49-144 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.9 8.4E-25 1.8E-29 147.5 11.8 93 48-144 1-93 (93)
6 PF00011 HSP20: Hsp20/alpha cr 99.9 1.7E-24 3.7E-29 148.0 12.5 99 51-156 1-102 (102)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 5.9E-24 1.3E-28 142.7 12.6 89 48-144 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 3.6E-23 7.8E-28 137.8 10.9 82 51-144 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 1.1E-22 2.3E-27 134.7 10.6 82 51-144 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 2.1E-22 4.5E-27 133.5 10.7 82 52-145 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 1.6E-22 3.5E-27 133.0 9.0 79 51-144 2-81 (81)
12 cd06476 ACD_HspB2_like Alpha c 99.9 1E-21 2.2E-26 129.9 10.6 81 52-144 2-83 (83)
13 cd06475 ACD_HspB1_like Alpha c 99.9 1.1E-21 2.4E-26 130.6 10.2 82 50-143 3-85 (86)
14 cd06481 ACD_HspB9_like Alpha c 99.9 1.8E-21 3.9E-26 129.9 9.8 83 54-144 4-87 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 5.2E-21 1.1E-25 126.5 11.4 88 51-144 1-88 (88)
16 cd06477 ACD_HspB3_Like Alpha c 99.8 1.8E-20 3.9E-25 123.8 10.6 79 53-143 3-82 (83)
17 cd06482 ACD_HspB10 Alpha cryst 99.8 1.7E-20 3.7E-25 124.9 9.7 80 55-143 6-86 (87)
18 cd06526 metazoan_ACD Alpha-cry 99.8 1.9E-20 4.1E-25 123.8 9.1 78 55-144 5-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 9.8E-19 2.1E-23 132.8 8.1 115 41-157 78-194 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.8 5.9E-18 1.3E-22 113.4 9.5 82 51-144 9-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 1.6E-16 3.5E-21 118.2 12.5 99 47-157 62-163 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 2E-14 4.3E-19 91.9 9.7 80 52-144 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 6.4E-12 1.4E-16 81.5 9.4 70 53-147 2-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.1 7.8E-10 1.7E-14 81.9 10.4 79 47-149 91-172 (177)
25 cd06463 p23_like Proteins cont 99.1 1.2E-09 2.5E-14 70.9 9.6 75 53-147 2-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.9 1.1E-08 2.5E-13 66.9 8.0 77 51-147 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.6 1.4E-06 3E-11 55.8 11.6 77 48-144 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.4 8.4E-06 1.8E-10 56.1 10.5 78 48-146 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.2 7.4E-06 1.6E-10 66.3 8.9 65 56-143 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.2 2E-05 4.4E-10 51.6 8.9 78 51-148 1-78 (84)
31 cd06467 p23_NUDC_like p23_like 98.1 7.6E-05 1.6E-09 48.7 9.4 75 50-147 1-77 (85)
32 cd06488 p23_melusin_like p23_l 98.0 0.00014 3E-09 48.1 9.8 80 49-148 2-81 (87)
33 cd06468 p23_CacyBP p23_like do 98.0 0.00016 3.5E-09 48.0 10.0 79 49-147 3-85 (92)
34 cd06493 p23_NUDCD1_like p23_NU 97.9 0.00037 8E-09 45.8 10.2 76 50-148 1-78 (85)
35 cd00237 p23 p23 binds heat sho 97.5 0.0033 7E-08 43.2 10.7 78 48-147 2-79 (106)
36 cd06494 p23_NUDCD2_like p23-li 97.3 0.0039 8.6E-08 41.8 8.9 77 47-147 5-83 (93)
37 PLN03088 SGT1, suppressor of 97.2 0.0042 9E-08 51.3 9.6 82 47-148 156-237 (356)
38 KOG1309 Suppressor of G2 allel 97.1 0.0028 6.1E-08 47.3 7.2 80 47-146 3-82 (196)
39 cd06490 p23_NCB5OR p23_like do 96.9 0.03 6.5E-07 36.9 10.2 78 50-149 1-82 (87)
40 cd06492 p23_mNUDC_like p23-lik 96.6 0.033 7.1E-07 36.8 8.5 74 51-147 2-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 96.3 0.11 2.3E-06 35.5 10.2 81 47-147 4-87 (102)
42 PF14913 DPCD: DPCD protein fa 91.1 2.7 5.9E-05 31.8 8.6 76 47-144 86-168 (194)
43 KOG1667 Zn2+-binding protein M 89.0 3.3 7.1E-05 32.9 7.9 89 46-153 213-301 (320)
44 KOG3158 HSP90 co-chaperone p23 89.0 2.7 5.8E-05 31.4 7.0 81 46-148 6-86 (180)
45 PF13349 DUF4097: Domain of un 88.4 6.4 0.00014 28.1 8.8 83 48-142 66-148 (166)
46 COG5091 SGT1 Suppressor of G2 86.2 0.38 8.3E-06 38.6 1.3 82 49-149 178-259 (368)
47 KOG2265 Nuclear distribution p 83.1 13 0.00028 27.9 8.0 82 43-147 14-97 (179)
48 cd06482 ACD_HspB10 Alpha cryst 82.4 3.2 6.9E-05 27.3 4.3 33 113-146 9-41 (87)
49 cd06470 ACD_IbpA-B_like Alpha- 79.8 5.1 0.00011 26.2 4.6 35 112-147 11-45 (90)
50 cd06477 ACD_HspB3_Like Alpha c 77.6 5.8 0.00012 25.8 4.3 32 114-146 9-40 (83)
51 cd06497 ACD_alphaA-crystallin_ 77.2 6.7 0.00015 25.6 4.6 34 112-146 10-43 (86)
52 PF08308 PEGA: PEGA domain; I 77.2 12 0.00025 23.0 5.5 44 47-90 24-68 (71)
53 cd06476 ACD_HspB2_like Alpha c 77.0 6.4 0.00014 25.5 4.4 33 113-146 8-40 (83)
54 cd06478 ACD_HspB4-5-6 Alpha-cr 76.8 7.4 0.00016 25.1 4.7 32 113-145 8-39 (83)
55 cd06471 ACD_LpsHSP_like Group 75.7 7.7 0.00017 25.2 4.6 33 113-146 11-43 (93)
56 cd06526 metazoan_ACD Alpha-cry 73.1 8.1 0.00017 24.7 4.1 34 113-147 8-41 (83)
57 PRK10743 heat shock protein Ib 70.8 12 0.00025 26.8 4.8 32 114-146 47-78 (137)
58 cd06479 ACD_HspB7_like Alpha c 70.5 12 0.00025 24.3 4.4 33 113-146 9-41 (81)
59 KOG3260 Calcyclin-binding prot 70.4 20 0.00043 27.2 6.0 81 49-148 76-156 (224)
60 cd06481 ACD_HspB9_like Alpha c 69.2 12 0.00027 24.3 4.4 33 113-146 8-40 (87)
61 cd06475 ACD_HspB1_like Alpha c 69.1 17 0.00036 23.6 5.0 34 112-146 10-43 (86)
62 cd06498 ACD_alphaB-crystallin_ 69.1 14 0.00029 24.0 4.5 33 113-146 8-40 (84)
63 cd06472 ACD_ScHsp26_like Alpha 67.9 19 0.0004 23.4 5.1 32 113-145 10-42 (92)
64 cd06464 ACD_sHsps-like Alpha-c 67.0 16 0.00034 22.9 4.5 34 113-147 8-41 (88)
65 PF00011 HSP20: Hsp20/alpha cr 66.3 20 0.00042 23.5 5.0 33 112-145 7-39 (102)
66 cd06469 p23_DYX1C1_like p23_li 65.5 24 0.00051 21.8 5.1 32 57-89 36-68 (78)
67 cd06480 ACD_HspB8_like Alpha-c 63.4 18 0.0004 23.9 4.3 31 57-87 58-89 (91)
68 PF12992 DUF3876: Domain of un 63.0 37 0.0008 22.8 5.7 42 44-86 22-68 (95)
69 PRK11597 heat shock chaperone 63.0 31 0.00067 24.8 5.8 32 114-146 45-76 (142)
70 PRK05518 rpl6p 50S ribosomal p 58.1 61 0.0013 24.3 6.8 46 69-143 12-57 (180)
71 COG0071 IbpA Molecular chapero 56.5 26 0.00057 24.9 4.5 32 114-146 52-83 (146)
72 PF01954 DUF104: Protein of un 56.3 12 0.00025 23.0 2.2 29 127-156 3-31 (60)
73 PF06977 SdiA-regulated: SdiA- 56.3 97 0.0021 24.4 8.5 65 63-141 15-81 (248)
74 TIGR03653 arch_L6P archaeal ri 55.9 74 0.0016 23.6 6.9 45 70-143 7-51 (170)
75 PF04972 BON: BON domain; Int 54.0 36 0.00078 20.2 4.3 27 66-93 12-38 (64)
76 PTZ00027 60S ribosomal protein 53.0 68 0.0015 24.3 6.4 48 69-143 12-59 (190)
77 TIGR03654 L6_bact ribosomal pr 52.7 76 0.0017 23.5 6.6 44 70-143 11-54 (175)
78 PRK05498 rplF 50S ribosomal pr 50.3 72 0.0016 23.7 6.1 44 70-143 12-55 (178)
79 KOG3591 Alpha crystallins [Pos 45.2 33 0.00072 25.5 3.6 32 62-93 120-152 (173)
80 CHL00140 rpl6 ribosomal protei 41.6 1E+02 0.0022 23.0 5.7 18 70-88 12-29 (178)
81 KOG3247 Uncharacterized conser 41.1 16 0.00036 31.0 1.5 78 46-148 2-82 (466)
82 PTZ00179 60S ribosomal protein 41.0 1.2E+02 0.0026 22.9 6.1 18 70-88 12-29 (189)
83 cd06467 p23_NUDC_like p23_like 40.3 92 0.002 19.4 5.6 31 113-143 9-39 (85)
84 cd00503 Frataxin Frataxin is a 38.4 35 0.00075 23.2 2.6 18 127-144 28-45 (105)
85 PF00347 Ribosomal_L6: Ribosom 38.2 66 0.0014 19.8 3.8 18 70-88 2-19 (77)
86 KOG3413 Mitochondrial matrix p 35.7 18 0.00039 26.3 0.8 23 122-144 67-89 (156)
87 PF07076 DUF1344: Protein of u 35.5 32 0.00069 21.2 1.8 15 116-130 25-39 (61)
88 PF01491 Frataxin_Cyay: Fratax 35.1 49 0.0011 22.5 3.0 18 127-144 30-47 (109)
89 TIGR03421 FeS_CyaY iron donor 33.1 46 0.00099 22.5 2.5 17 128-144 26-42 (102)
90 PRK00446 cyaY frataxin-like pr 32.6 44 0.00096 22.7 2.4 17 129-145 29-45 (105)
91 PF14814 UB2H: Bifunctional tr 31.9 1.1E+02 0.0024 19.7 4.1 43 100-142 29-73 (85)
92 cd01759 PLAT_PL PLAT/LH2 domai 31.4 1.8E+02 0.0038 20.1 7.9 42 113-157 45-87 (113)
93 PF06964 Alpha-L-AF_C: Alpha-L 30.6 87 0.0019 22.8 3.9 27 119-145 150-176 (177)
94 cd06494 p23_NUDCD2_like p23-li 28.4 1.8E+02 0.0039 19.1 6.0 32 111-142 14-45 (93)
95 TIGR03422 mito_frataxin fratax 27.6 47 0.001 22.3 1.8 15 130-144 30-44 (97)
96 PF13620 CarboxypepD_reg: Carb 27.2 92 0.002 19.1 3.1 31 56-86 47-78 (82)
97 PF11741 AMIN: AMIN domain; I 25.6 1.8E+02 0.0039 18.3 9.5 28 112-142 68-95 (95)
98 cd07698 IgC_MHC_I_alpha3 Class 25.5 1.9E+02 0.0041 18.5 5.6 26 56-81 14-39 (93)
99 TIGR00251 conserved hypothetic 24.8 2.1E+02 0.0045 18.8 4.5 38 52-91 1-41 (87)
100 PF12080 GldM_C: GldM C-termin 21.5 1.3E+02 0.0028 22.4 3.4 37 50-87 7-43 (181)
101 PF07873 YabP: YabP family; I 21.4 82 0.0018 19.3 1.9 22 68-90 23-44 (66)
102 PF14545 DBB: Dof, BCAP, and B 21.1 3.1E+02 0.0067 19.8 5.1 29 55-83 47-78 (142)
103 PF10988 DUF2807: Protein of u 20.7 2.5E+02 0.0053 20.1 4.7 30 115-145 22-51 (181)
104 cd05847 IgC_CH2_IgE CH2 domain 20.7 2.5E+02 0.0055 18.2 5.9 28 55-82 13-41 (94)
105 PRK11198 LysM domain/BON super 20.5 1.7E+02 0.0037 20.9 3.7 26 66-92 38-63 (147)
106 COG0097 RplF Ribosomal protein 20.1 3.9E+02 0.0084 20.1 6.1 20 68-88 10-29 (178)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.96 E-value=5.2e-29 Score=179.62 Aligned_cols=102 Identities=21% Similarity=0.381 Sum_probs=90.4
Q ss_pred CCCCeeEEE-eCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCc
Q 031533 46 AATPADVME-YPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNA 124 (158)
Q Consensus 46 ~~p~~~i~e-~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~v 124 (158)
..|++||.| ++++|+|.++|||+++++|+|.++ ++.|+|+|++.... ++..|+++|+.+|+|.|+|.||++|
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~-~~~LtI~ge~~~~~------~~~~~~~~Er~~g~F~R~f~LP~~v 103 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLE-GTRLTVKGTPEQPE------KEVKWLHQGLVNQPFSLSFTLAENM 103 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEE-CCEEEEEEEEcccc------CCCcEEEEEEeCcEEEEEEECCCCc
Confidence 459999998 477999999999999999999999 58999999976322 5678999999999999999999999
Q ss_pred ccCCeEEEEeCcEEEEEEecC--CCCCCeeEEEe
Q 031533 125 NVDKISALCQDGVLTVTVEKV--PPPQPKTIQVQ 156 (158)
Q Consensus 125 d~~~i~A~~~~GiL~I~lpK~--~~~~~~~i~I~ 156 (158)
|.+ +|.|+||||+|+|||. +..++++|+|+
T Consensus 104 d~~--~A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 104 EVS--GATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred ccC--cCEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 998 7999999999999997 44566999886
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.7e-29 Score=180.23 Aligned_cols=107 Identities=34% Similarity=0.690 Sum_probs=98.6
Q ss_pred cCCCCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCc
Q 031533 45 MAATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNA 124 (158)
Q Consensus 45 ~~~p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~v 124 (158)
.+.|++||.+++++|.|.++|||+++++|+|+++ ++.|+|+|++.... ..++..++++++.+|.|+|+|.||..|
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~-~~~l~I~g~~~~~~----~~~~~~~~~~e~~~~~f~r~~~Lp~~v 112 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVE-GNTLTIRGEREEEE----EEEEEGYLRRERAYGEFERTFRLPEKV 112 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEE-CCEEEEEEEecccc----cccCCceEEEEEEeeeEEEEEECcccc
Confidence 5789999999999999999999999999999999 58999999998855 567889999999999999999999999
Q ss_pred ccCCeEEEEeCcEEEEEEecCCCC--CCeeEEEe
Q 031533 125 NVDKISALCQDGVLTVTVEKVPPP--QPKTIQVQ 156 (158)
Q Consensus 125 d~~~i~A~~~~GiL~I~lpK~~~~--~~~~i~I~ 156 (158)
+.+.++|.|+||+|+|+|||..+. ++++|.|+
T Consensus 113 ~~~~~~A~~~nGvL~I~lpk~~~~~~~~~~i~I~ 146 (146)
T COG0071 113 DPEVIKAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146 (146)
T ss_pred cccceeeEeeCcEEEEEEeccccccccCceeecC
Confidence 999999999999999999999877 45777764
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=2.2e-28 Score=175.70 Aligned_cols=100 Identities=27% Similarity=0.464 Sum_probs=88.5
Q ss_pred CCeeEEE-eCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCccc
Q 031533 48 TPADVME-YPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANV 126 (158)
Q Consensus 48 p~~~i~e-~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~ 126 (158)
|++||.+ ++++|.|.++|||++++||+|++.+ +.|+|+|++.... ++.+|+++|+.+|+|.|+|.||++||.
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~------~~~~~~~~Er~~g~F~R~~~LP~~Vd~ 107 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQ------KERTYLYQGIAERNFERKFQLAENIHV 107 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccc------cCCcEEEEEEECCEEEEEEECCCCccc
Confidence 8999995 8999999999999999999999995 7999999975433 456799999999999999999999999
Q ss_pred CCeEEEEeCcEEEEEEecC--CCCCCeeEEEe
Q 031533 127 DKISALCQDGVLTVTVEKV--PPPQPKTIQVQ 156 (158)
Q Consensus 127 ~~i~A~~~~GiL~I~lpK~--~~~~~~~i~I~ 156 (158)
+ +|.|+||+|+|++||. +..++|+|+|+
T Consensus 108 ~--~A~~~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 108 R--GANLVNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred C--cCEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence 9 4999999999999997 33555888874
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.94 E-value=2e-26 Score=155.28 Aligned_cols=92 Identities=47% Similarity=0.793 Sum_probs=85.1
Q ss_pred CeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCC
Q 031533 49 PADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDK 128 (158)
Q Consensus 49 ~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 128 (158)
++||.|++++|+|.++|||+++++|+|++.+++.|+|+|++.... ..++..++++|+.+|.|.|+|.||.+||.+.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~----~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~ 76 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEE----EKKGDDWHRVERSSGRFVRRFRLPENADADE 76 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccc----cccCCCEEEEEEeccEEEEEEECCCCCCHHH
Confidence 479999999999999999999999999998546999999987665 4567889999999999999999999999999
Q ss_pred eEEEEeCcEEEEEEec
Q 031533 129 ISALCQDGVLTVTVEK 144 (158)
Q Consensus 129 i~A~~~~GiL~I~lpK 144 (158)
|+|.|+||+|+|++||
T Consensus 77 i~A~~~nGvL~I~lPK 92 (92)
T cd06472 77 VKAFLENGVLTVTVPK 92 (92)
T ss_pred CEEEEECCEEEEEecC
Confidence 9999999999999998
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=8.4e-25 Score=147.46 Aligned_cols=93 Identities=33% Similarity=0.635 Sum_probs=83.4
Q ss_pred CCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031533 48 TPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVD 127 (158)
Q Consensus 48 p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
|++||.|++++|+|.++|||+++++|+|.+. ++.|+|+|+++...++ ....+.++++|+.+|.|.|+|.|| +++.+
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~-~~~L~I~g~~~~~~~~--~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~ 76 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYK-DGYLTISAKRDESKDE--KDKKGNYIRRERYYGSFSRSFYLP-NVDEE 76 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcccccc--ccccCCEEEEeeeccEEEEEEECC-CCCHH
Confidence 4689999999999999999999999999999 5899999999765421 233467999999999999999999 79999
Q ss_pred CeEEEEeCcEEEEEEec
Q 031533 128 KISALCQDGVLTVTVEK 144 (158)
Q Consensus 128 ~i~A~~~~GiL~I~lpK 144 (158)
.|+|.|+||+|+|++||
T Consensus 77 ~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 77 EIKAKYENGVLKITLPK 93 (93)
T ss_pred HCEEEEECCEEEEEEcC
Confidence 99999999999999998
No 6
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.92 E-value=1.7e-24 Score=147.98 Aligned_cols=99 Identities=40% Similarity=0.750 Sum_probs=81.5
Q ss_pred eEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeE
Q 031533 51 DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130 (158)
Q Consensus 51 ~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
||.+++++|.|.++|||+++++|+|++.+ +.|.|+|++. . ...+..++..+++.+.|.|+|.||+++|.++|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~--~----~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~ 73 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRK--E----EEEDDRYYRSERRYGSFERSIRLPEDVDPDKIK 73 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEE--G----EECTTCEEEE-S-SEEEEEEEE-STTB-GGG-E
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceee--e----eeeeeeeeecccccceEEEEEcCCCcCCcceEE
Confidence 68999999999999999999999999994 7999999998 2 235567788899999999999999999999999
Q ss_pred EEEeCcEEEEEEecCCCCC---CeeEEEe
Q 031533 131 ALCQDGVLTVTVEKVPPPQ---PKTIQVQ 156 (158)
Q Consensus 131 A~~~~GiL~I~lpK~~~~~---~~~i~I~ 156 (158)
|.|+||+|+|++||....+ +++|+|+
T Consensus 74 a~~~~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 74 ASYENGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEETTSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEecCCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999999997763 4888874
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.92 E-value=5.9e-24 Score=142.71 Aligned_cols=89 Identities=26% Similarity=0.505 Sum_probs=81.5
Q ss_pred CCeeEEEeC-CeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCccc
Q 031533 48 TPADVMEYP-NSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANV 126 (158)
Q Consensus 48 p~~~i~e~~-d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~ 126 (158)
|+++|.+++ +.|.|.++|||+++++|+|.+. ++.|+|+|+++... . +...|+++|+.+|+|.|+|.||.++|.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~-~~~L~I~g~~~~~~----~-~~~~~~~~e~~~g~f~R~~~LP~~vd~ 74 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVE-NNQLTVTGKKADEE----N-EEREYLHRGIAKRAFERSFNLADHVKV 74 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcccc----c-CCCcEEEEEEeceEEEEEEECCCCceE
Confidence 689999975 8999999999999999999999 58999999998776 3 667889999999999999999999987
Q ss_pred CCeEEEEeCcEEEEEEec
Q 031533 127 DKISALCQDGVLTVTVEK 144 (158)
Q Consensus 127 ~~i~A~~~~GiL~I~lpK 144 (158)
. +|.|+||+|+|+||+
T Consensus 75 ~--~A~~~~GvL~I~l~~ 90 (90)
T cd06470 75 K--GAELENGLLTIDLER 90 (90)
T ss_pred C--eeEEeCCEEEEEEEC
Confidence 5 899999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.90 E-value=3.6e-23 Score=137.79 Aligned_cols=82 Identities=23% Similarity=0.457 Sum_probs=72.6
Q ss_pred eEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeE
Q 031533 51 DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130 (158)
Q Consensus 51 ~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
+|.+++++|.|.++|||+++++|+|++. ++.|+|+|++.... ++..|++++ |.|+|.||++||.++|+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~------~~~~~~~~e-----f~R~~~LP~~Vd~~~i~ 71 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVL-DDYVEIHGKHSERQ------DDHGYISRE-----FHRRYRLPSNVDQSAIT 71 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEccee------CCCCEEEEE-----EEEEEECCCCCChHHeE
Confidence 7999999999999999999999999999 58999999864332 334566554 99999999999999999
Q ss_pred EEE-eCcEEEEEEec
Q 031533 131 ALC-QDGVLTVTVEK 144 (158)
Q Consensus 131 A~~-~~GiL~I~lpK 144 (158)
|.| +||+|+|++||
T Consensus 72 A~~~~dGvL~I~~PK 86 (86)
T cd06497 72 CSLSADGMLTFSGPK 86 (86)
T ss_pred EEeCCCCEEEEEecC
Confidence 999 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.89 E-value=1.1e-22 Score=134.68 Aligned_cols=82 Identities=22% Similarity=0.410 Sum_probs=71.3
Q ss_pred eEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeE
Q 031533 51 DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130 (158)
Q Consensus 51 ~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
+|.+++++|.|.++|||+++++|+|++. ++.|+|+|++.... ++..|++++ |.|+|.||.+||.++|+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~------~~~~~~~~e-----f~R~~~LP~~vd~~~i~ 68 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVL-GDFVEIHGKHEERQ------DEHGFISRE-----FHRRYRLPPGVDPAAIT 68 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEceEc------CCCCEEEEE-----EEEEEECCCCcChHHeE
Confidence 4678999999999999999999999999 58999999865333 234466543 99999999999999999
Q ss_pred EEE-eCcEEEEEEec
Q 031533 131 ALC-QDGVLTVTVEK 144 (158)
Q Consensus 131 A~~-~~GiL~I~lpK 144 (158)
|.| +||+|+|++||
T Consensus 69 A~~~~dGvL~I~~PK 83 (83)
T cd06478 69 SSLSADGVLTISGPR 83 (83)
T ss_pred EEECCCCEEEEEecC
Confidence 999 79999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=2.1e-22 Score=133.53 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=70.8
Q ss_pred EEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEE
Q 031533 52 VMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISA 131 (158)
Q Consensus 52 i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 131 (158)
+.+++++|.|.++|||+++++|+|++. ++.|+|+|++.... +...++++ .|.|+|.||.+||.++|+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~------~~~~~~~~-----eF~R~~~LP~~vd~~~i~A 69 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVL-GDFIEIHGKHEERQ------DEHGFISR-----EFQRKYRIPADVDPLTITS 69 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEccee------CCCCEEEE-----EEEEEEECCCCCChHHcEE
Confidence 567899999999999999999999999 58999999865433 23445543 4999999999999999999
Q ss_pred EEe-CcEEEEEEecC
Q 031533 132 LCQ-DGVLTVTVEKV 145 (158)
Q Consensus 132 ~~~-~GiL~I~lpK~ 145 (158)
.|+ ||+|+|++||+
T Consensus 70 ~~~~dGvL~I~lPk~ 84 (84)
T cd06498 70 SLSPDGVLTVCGPRK 84 (84)
T ss_pred EeCCCCEEEEEEeCC
Confidence 995 99999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.88 E-value=1.6e-22 Score=133.03 Aligned_cols=79 Identities=24% Similarity=0.438 Sum_probs=70.9
Q ss_pred eEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeE
Q 031533 51 DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130 (158)
Q Consensus 51 ~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
+|.|++++|.|.++|||++|++|+|++. ++.|+|+|+++... . ..+|+|.|+|.||.+||+++|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~-~~~L~I~ger~~~~------~--------~~~g~F~R~~~LP~~vd~e~v~ 66 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTS-NNQIEVHAEKLASD------G--------TVMNTFTHKCQLPEDVDPTSVS 66 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEeccC------C--------CEEEEEEEEEECCCCcCHHHeE
Confidence 6889999999999999999999999999 58999999975332 1 1378899999999999999999
Q ss_pred EEE-eCcEEEEEEec
Q 031533 131 ALC-QDGVLTVTVEK 144 (158)
Q Consensus 131 A~~-~~GiL~I~lpK 144 (158)
|.| +||+|+|++++
T Consensus 67 A~l~~~GvL~I~~~~ 81 (81)
T cd06479 67 SSLGEDGTLTIKARR 81 (81)
T ss_pred EEecCCCEEEEEecC
Confidence 997 99999999985
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.87 E-value=1e-21 Score=129.93 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=69.3
Q ss_pred EEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEE
Q 031533 52 VMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISA 131 (158)
Q Consensus 52 i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 131 (158)
+..++++|.|.++|||+++++|+|++. ++.|+|+|++.... +...++++ +|+|+|.||.+||.++|+|
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~------~~~~~~~~-----eF~R~~~LP~~vd~~~v~A 69 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTV-DNLLEVSARHPQRM------DRHGFVSR-----EFTRTYILPMDVDPLLVRA 69 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEE-CCEEEEEEEEccee------cCCCEEEE-----EEEEEEECCCCCChhhEEE
Confidence 345788999999999999999999999 48999999975432 23345543 4999999999999999999
Q ss_pred EEe-CcEEEEEEec
Q 031533 132 LCQ-DGVLTVTVEK 144 (158)
Q Consensus 132 ~~~-~GiL~I~lpK 144 (158)
.|. ||+|+|++||
T Consensus 70 ~~~~dGvL~I~~Pr 83 (83)
T cd06476 70 SLSHDGILCIQAPR 83 (83)
T ss_pred EecCCCEEEEEecC
Confidence 995 9999999997
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=1.1e-21 Score=130.58 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=71.6
Q ss_pred eeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCe
Q 031533 50 ADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKI 129 (158)
Q Consensus 50 ~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i 129 (158)
.+|.|++++|.|.++|||+++++|+|++. ++.|+|+|++.... +...+. .++|.|+|.||.+||.++|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~------~~~~~~-----~~~f~R~f~LP~~vd~~~v 70 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTK-DGVVEITGKHEEKQ------DEHGFV-----SRCFTRKYTLPPGVDPTAV 70 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEE-CCEEEEEEEECcCc------CCCCEE-----EEEEEEEEECCCCCCHHHc
Confidence 58999999999999999999999999999 58999999975433 223333 3479999999999999999
Q ss_pred EEEEe-CcEEEEEEe
Q 031533 130 SALCQ-DGVLTVTVE 143 (158)
Q Consensus 130 ~A~~~-~GiL~I~lp 143 (158)
+|.|. ||+|+|++|
T Consensus 71 ~A~~~~dGvL~I~lP 85 (86)
T cd06475 71 TSSLSPDGILTVEAP 85 (86)
T ss_pred EEEECCCCeEEEEec
Confidence 99996 999999998
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.86 E-value=1.8e-21 Score=129.85 Aligned_cols=83 Identities=18% Similarity=0.457 Sum_probs=71.6
Q ss_pred EeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEEE
Q 031533 54 EYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALC 133 (158)
Q Consensus 54 e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~ 133 (158)
+..++|.|.++|||+++++|+|++. ++.|+|+|++.... ..+...|.+ ..|+|.|+|.||++||.+.|+|.|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~----~~~~~~~~~---~~~~F~R~~~LP~~Vd~~~i~A~~ 75 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVD-GRKLVVTGKREKKN----EDEKGSFSY---EYQEFVREAQLPEHVDPEAVTCSL 75 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEE-CCEEEEEEEEeeec----ccCCCcEEE---EeeEEEEEEECCCCcChHHeEEEe
Confidence 4567999999999999999999999 58999999986654 233344443 378999999999999999999999
Q ss_pred -eCcEEEEEEec
Q 031533 134 -QDGVLTVTVEK 144 (158)
Q Consensus 134 -~~GiL~I~lpK 144 (158)
+||+|+|++|+
T Consensus 76 ~~dGvL~I~~P~ 87 (87)
T cd06481 76 SPSGHLHIRAPR 87 (87)
T ss_pred CCCceEEEEcCC
Confidence 99999999995
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.86 E-value=5.2e-21 Score=126.54 Aligned_cols=88 Identities=45% Similarity=0.807 Sum_probs=80.4
Q ss_pred eEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeE
Q 031533 51 DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130 (158)
Q Consensus 51 ~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
++.+++++|.|.++|||+++++|+|++. ++.|.|+|++.... ... ..+...++..+.|.|+|.||..+|.+.++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~-~~~l~I~g~~~~~~----~~~-~~~~~~~~~~~~f~r~~~LP~~vd~~~i~ 74 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVE-DGVLTISGEREEEE----EEE-ENYLRRERSYGSFSRSFRLPEDVDPDKIK 74 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEeccc----ccC-CcEEEEEEeCcEEEEEEECCCCcCHHHcE
Confidence 4678899999999999999999999999 58999999998777 222 37888899999999999999999999999
Q ss_pred EEEeCcEEEEEEec
Q 031533 131 ALCQDGVLTVTVEK 144 (158)
Q Consensus 131 A~~~~GiL~I~lpK 144 (158)
|.|+||+|+|++||
T Consensus 75 a~~~~G~L~I~~pk 88 (88)
T cd06464 75 ASLENGVLTITLPK 88 (88)
T ss_pred EEEeCCEEEEEEcC
Confidence 99999999999997
No 16
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.85 E-value=1.8e-20 Score=123.80 Aligned_cols=79 Identities=25% Similarity=0.448 Sum_probs=67.6
Q ss_pred EEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEE
Q 031533 53 MEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISAL 132 (158)
Q Consensus 53 ~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~ 132 (158)
.+++++|.|+++|||+++++|+|++. ++.|+|+|++.... +...+. .++|.|+|.||.+|+.++|+|.
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~-~~~L~I~ge~~~~~------~~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~ 70 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVF-EGWLLIKGQHGVRM------DEHGFI-----SRSFTRQYQLPDGVEHKDLSAM 70 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEE-CCEEEEEEEEcccc------CCCCEE-----EEEEEEEEECCCCcchheEEEE
Confidence 35788999999999999999999999 58999999986643 123333 2379999999999999999999
Q ss_pred E-eCcEEEEEEe
Q 031533 133 C-QDGVLTVTVE 143 (158)
Q Consensus 133 ~-~~GiL~I~lp 143 (158)
| +||+|+|+.|
T Consensus 71 ~~~dGvL~I~~~ 82 (83)
T cd06477 71 LCHDGILVVETK 82 (83)
T ss_pred EcCCCEEEEEec
Confidence 8 8999999986
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.84 E-value=1.7e-20 Score=124.88 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=68.8
Q ss_pred eCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEEEe
Q 031533 55 YPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQ 134 (158)
Q Consensus 55 ~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 134 (158)
+++.|+|.++|||+++++|+|++. ++.|+|+|+++... +.++ ..++.+|+|.|+|.||.+||.++|+|.|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~-~~~L~I~ger~~~~----e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~ 76 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVK-DGKVQVSAERENRY----DCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYG 76 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEeccc----ccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEc
Confidence 467999999999999999999999 48999999987655 1111 13667999999999999999999999996
Q ss_pred Cc-EEEEEEe
Q 031533 135 DG-VLTVTVE 143 (158)
Q Consensus 135 ~G-iL~I~lp 143 (158)
|| +|+|..|
T Consensus 77 ~~~~l~i~~~ 86 (87)
T cd06482 77 LGSVVKIETP 86 (87)
T ss_pred CCCEEEEeeC
Confidence 65 9999887
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=1.9e-20 Score=123.80 Aligned_cols=78 Identities=29% Similarity=0.541 Sum_probs=68.0
Q ss_pred eCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEEEe
Q 031533 55 YPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQ 134 (158)
Q Consensus 55 ~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 134 (158)
.+++|.|.++|||+++++|+|++. ++.|+|+|++.... . ...+ ..++|.|+|.||.+||.+.++|.|.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~-~~~L~I~g~~~~~~----~--~~~~-----~~~~f~r~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVS-DNKLVVEGKHEERE----D--EHGY-----VSREFTRRYQLPEGVDPDSVTSSLS 72 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEE-CCEEEEEEEEeeec----c--CCCE-----EEEEEEEEEECCCCCChHHeEEEeC
Confidence 346999999999999999999999 58999999987654 1 2222 3678999999999999999999998
Q ss_pred C-cEEEEEEec
Q 031533 135 D-GVLTVTVEK 144 (158)
Q Consensus 135 ~-GiL~I~lpK 144 (158)
| |+|+|++||
T Consensus 73 ~~GvL~I~~Pk 83 (83)
T cd06526 73 SDGVLTIEAPK 83 (83)
T ss_pred CCcEEEEEecC
Confidence 7 999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=9.8e-19 Score=132.76 Aligned_cols=115 Identities=49% Similarity=0.808 Sum_probs=98.3
Q ss_pred cccccCCCCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEEC
Q 031533 41 DAKAMAATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVL 120 (158)
Q Consensus 41 ~~~~~~~p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~L 120 (158)
.....+.++.+|.+..+.|.+.+++||+.+++++|.++++++|.|+|++....++ ...+..++..|+..|.|.+.+.|
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~--~~~~~~~~~~E~~~g~F~r~~~l 155 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEE--SGSGKKWKRVERKLGKFKRRFEL 155 (196)
T ss_pred cccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEeccccccccc--ccCCccceeehhcccceEeeecC
Confidence 3445567788999999999999999999999999999975689999999888732 22556788889999999999999
Q ss_pred CCCcccCCeEEEEeCcEEEEEEecCCC--CCCeeEEEee
Q 031533 121 PDNANVDKISALCQDGVLTVTVEKVPP--PQPKTIQVQV 157 (158)
Q Consensus 121 P~~vd~~~i~A~~~~GiL~I~lpK~~~--~~~~~i~I~~ 157 (158)
|++++.+.|+|.|+||+|+|++||..+ .+++...|.+
T Consensus 156 Penv~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i 194 (196)
T KOG0710|consen 156 PENVDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAI 194 (196)
T ss_pred CccccHHHHHHHhhCCeEEEEEecccccccCCccceeec
Confidence 999999999999999999999999987 4555555544
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.76 E-value=5.9e-18 Score=113.42 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=70.0
Q ss_pred eEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeE
Q 031533 51 DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130 (158)
Q Consensus 51 ~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
-+..++++|.|.+++.||+++||+|++. ++.|+|+|+++... .+ ..+. .++|.|+|.||.+||++.|+
T Consensus 9 ~~~~~~~~f~v~ldv~gF~pEDL~Vkv~-~~~L~V~Gkh~~~~-----~e-~g~~-----~r~F~R~~~LP~~Vd~~~v~ 76 (91)
T cd06480 9 PPPNSSEPWKVCVNVHSFKPEELTVKTK-DGFVEVSGKHEEQQ-----KE-GGIV-----SKNFTKKIQLPPEVDPVTVF 76 (91)
T ss_pred CCCCCCCcEEEEEEeCCCCHHHcEEEEE-CCEEEEEEEECccc-----CC-CCEE-----EEEEEEEEECCCCCCchhEE
Confidence 3445788999999999999999999999 58999999987654 12 2344 36799999999999999999
Q ss_pred EEEe-CcEEEEEEec
Q 031533 131 ALCQ-DGVLTVTVEK 144 (158)
Q Consensus 131 A~~~-~GiL~I~lpK 144 (158)
|.+. ||+|+|.+|.
T Consensus 77 s~l~~dGvL~IeaP~ 91 (91)
T cd06480 77 ASLSPEGLLIIEAPQ 91 (91)
T ss_pred EEeCCCCeEEEEcCC
Confidence 9996 9999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.6e-16 Score=118.16 Aligned_cols=99 Identities=27% Similarity=0.554 Sum_probs=85.5
Q ss_pred CCCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCccc
Q 031533 47 ATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANV 126 (158)
Q Consensus 47 ~p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~ 126 (158)
....++..+.++|.|.+|+..|.|++|+|++. |+.|.|.|+.+... ++..+. .++|.|++.||.+||+
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~-~~~l~V~gkHeer~------d~~G~v-----~R~F~R~y~LP~~vdp 129 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTD-DNTLEVEGKHEEKE------DEHGYV-----SRSFVRKYLLPEDVDP 129 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEEeC-CCEEEEEeeecccc------CCCCeE-----EEEEEEEecCCCCCCh
Confidence 34678889999999999999999999999999 58999999987765 445555 3459999999999999
Q ss_pred CCeEEEE-eCcEEEEEEecCCCCC--CeeEEEee
Q 031533 127 DKISALC-QDGVLTVTVEKVPPPQ--PKTIQVQV 157 (158)
Q Consensus 127 ~~i~A~~-~~GiL~I~lpK~~~~~--~~~i~I~~ 157 (158)
++|++.+ .||+|+|++||.+... .|.|+|+.
T Consensus 130 ~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~~ 163 (173)
T KOG3591|consen 130 TSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQ 163 (173)
T ss_pred hheEEeeCCCceEEEEccCCCCcCccceEEeEee
Confidence 9999999 7999999999988765 58888864
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.58 E-value=2e-14 Score=91.92 Aligned_cols=80 Identities=40% Similarity=0.718 Sum_probs=70.6
Q ss_pred EEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEE
Q 031533 52 VMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISA 131 (158)
Q Consensus 52 i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 131 (158)
+.++++.|.|++++||+.+++++|.+. ++.|.|+|+..... . .+...+.|.+.+.||..++++.++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~-~~~l~v~~~~~~~~----~--------~~~~~~~~~~~~~L~~~i~~~~~~~ 67 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVE-DNVLTISGKREEEE----E--------RERSYGEFERSFELPEDVDPEKSKA 67 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcCCC----c--------ceEeeeeEEEEEECCCCcCHHHCEE
Confidence 357889999999999999999999999 58999999876655 1 3344677999999999999999999
Q ss_pred EEeCcEEEEEEec
Q 031533 132 LCQDGVLTVTVEK 144 (158)
Q Consensus 132 ~~~~GiL~I~lpK 144 (158)
.+.+|+|+|.+||
T Consensus 68 ~~~~~~l~i~l~K 80 (80)
T cd00298 68 SLENGVLEITLPK 80 (80)
T ss_pred EEECCEEEEEEcC
Confidence 9999999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.37 E-value=6.4e-12 Score=81.50 Aligned_cols=70 Identities=24% Similarity=0.320 Sum_probs=63.5
Q ss_pred EEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEE
Q 031533 53 MEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISAL 132 (158)
Q Consensus 53 ~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~ 132 (158)
.++++.+.|.+++||+++++++|.++ ++.|.|++ .. |.+.+.||..||++..+|.
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~-~~~l~i~~----~~--------------------~~~~~~l~~~I~~e~~~~~ 56 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCS-DLYLKVNF----PP--------------------YLFELDLAAPIDDEKSSAK 56 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEe-cCEEEEcC----CC--------------------EEEEEeCcccccccccEEE
Confidence 57889999999999999999999999 47898886 12 7889999999999999999
Q ss_pred EeCcEEEEEEecCCC
Q 031533 133 CQDGVLTVTVEKVPP 147 (158)
Q Consensus 133 ~~~GiL~I~lpK~~~ 147 (158)
+.+|.|.|+|+|.++
T Consensus 57 ~~~~~l~i~L~K~~~ 71 (78)
T cd06469 57 IGNGVLVFTLVKKEP 71 (78)
T ss_pred EeCCEEEEEEEeCCC
Confidence 999999999999875
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.13 E-value=7.8e-10 Score=81.92 Aligned_cols=79 Identities=22% Similarity=0.446 Sum_probs=62.5
Q ss_pred CCCeeEEEeCC-eEEEEEEcCCCCCCC-eEEEEe-cCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCC
Q 031533 47 ATPADVMEYPN-SYVFIVDMPGIKASE-IKVQVE-SENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDN 123 (158)
Q Consensus 47 ~p~~~i~e~~d-~y~i~~~lPG~~~~~-i~V~~~-~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~ 123 (158)
.+++++.++++ .++|.++|||+++++ |+|.+. +...|+|++ -+.|.+.+.||..
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~-----------------------~~~~~krv~L~~~ 147 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV-----------------------GEKYLKRVALPWP 147 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec-----------------------CCceEeeEecCCC
Confidence 45789998888 699999999998888 999999 334565542 1125579999977
Q ss_pred cccCCeEEEEeCcEEEEEEecCCCCC
Q 031533 124 ANVDKISALCQDGVLTVTVEKVPPPQ 149 (158)
Q Consensus 124 vd~~~i~A~~~~GiL~I~lpK~~~~~ 149 (158)
+.+.++|.|+||||.|.|-+.+.+.
T Consensus 148 -~~e~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 148 -DPEITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred -ccceeeEEEeCceEEEEEeecCCCC
Confidence 5788899999999999999876543
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.11 E-value=1.2e-09 Score=70.91 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=65.6
Q ss_pred EEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEE
Q 031533 53 MEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISAL 132 (158)
Q Consensus 53 ~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~ 132 (158)
.++++.+.|.+.+||..+++++|.+. ++.|.|++... . .+.|...+.|+..|+++..++.
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~-~~~l~i~~~~~--~-----------------~~~~~~~~~L~~~I~~~~s~~~ 61 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFT-PKSLTVSVKGG--G-----------------GKEYLLEGELFGPIDPEESKWT 61 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEe-cCEEEEEeeCC--C-----------------CCceEEeeEccCccchhhcEEE
Confidence 46789999999999999999999999 58999998632 1 1337788999999999999999
Q ss_pred EeCcEEEEEEecCCC
Q 031533 133 CQDGVLTVTVEKVPP 147 (158)
Q Consensus 133 ~~~GiL~I~lpK~~~ 147 (158)
+++|.|.|+|+|..+
T Consensus 62 ~~~~~l~i~L~K~~~ 76 (84)
T cd06463 62 VEDRKIEITLKKKEP 76 (84)
T ss_pred EeCCEEEEEEEECCC
Confidence 999999999999876
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.90 E-value=1.1e-08 Score=66.88 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=66.2
Q ss_pred eEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeE
Q 031533 51 DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130 (158)
Q Consensus 51 ~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
|+.++++.+.|.+.+||+.+++++|.+. ++.|.|++... . .+.|...+.|+..|+++..+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~-~~~l~i~~~~~--~-----------------~~~~~~~~~L~~~I~~~~s~ 60 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFN-EQSLSVSIILP--G-----------------GSEYQLELDLFGPIDPEQSK 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEe-cCEEEEEEECC--C-----------------CCeEEEecccccccCchhcE
Confidence 4678899999999999999999999999 58999986532 1 12377788999999999999
Q ss_pred EEEeCcEEEEEEecCCC
Q 031533 131 ALCQDGVLTVTVEKVPP 147 (158)
Q Consensus 131 A~~~~GiL~I~lpK~~~ 147 (158)
+.+.+|.|.|+|.|..+
T Consensus 61 ~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 61 VSVLPTKVEITLKKAEP 77 (84)
T ss_pred EEEeCeEEEEEEEcCCC
Confidence 99999999999999875
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.65 E-value=1.4e-06 Score=55.78 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=63.6
Q ss_pred CCeeEEEeCCeEEEEEEcCCC--CCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcc
Q 031533 48 TPADVMEYPNSYVFIVDMPGI--KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNAN 125 (158)
Q Consensus 48 p~~~i~e~~d~y~i~~~lPG~--~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd 125 (158)
|.+++.++++...|.+.+++. ++++++|.+.+ +.|.|+....... .|...+.|...|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~~-------------------~~~~~~~L~~~I~ 60 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDGK-------------------EYLLEGELFGEID 60 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTSC-------------------EEEEEEEBSS-BE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCCc-------------------eEEEEEEEeeeEc
Confidence 678999999999999999665 49999999995 8999996532211 2667888999999
Q ss_pred cCCeEEEEeCcEEEEEEec
Q 031533 126 VDKISALCQDGVLTVTVEK 144 (158)
Q Consensus 126 ~~~i~A~~~~GiL~I~lpK 144 (158)
++..+..+.++.|.|+|.|
T Consensus 61 ~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 61 PDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp CCCEEEEEETTEEEEEEEB
T ss_pred chhcEEEEECCEEEEEEEC
Confidence 9999999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.37 E-value=8.4e-06 Score=56.05 Aligned_cols=78 Identities=9% Similarity=0.122 Sum_probs=66.0
Q ss_pred CCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031533 48 TPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVD 127 (158)
Q Consensus 48 p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
|++++.++.+...|.+.+||+ ++++|.+. .+.|.|++.... . ...|...+.|...|+++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~-~~~l~v~~~~~~-~-----------------~~~y~~~~~L~~~I~pe 59 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLE-PTSLSFKAKGGG-G-----------------GKKYEFDLEFYKEIDPE 59 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEE-CCEEEEEEEcCC-C-----------------CeeEEEEeEhhhhcccc
Confidence 678999999999999999998 88999999 489999975311 1 11256678999999999
Q ss_pred CeEEEEeCcEEEEEEecCC
Q 031533 128 KISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 128 ~i~A~~~~GiL~I~lpK~~ 146 (158)
..+..+.++.|.|+|.|..
T Consensus 60 ~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 60 ESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred ccEEEecCCeEEEEEEECC
Confidence 9999999999999999987
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.23 E-value=7.4e-06 Score=66.34 Aligned_cols=65 Identities=31% Similarity=0.486 Sum_probs=56.8
Q ss_pred CCeEEEEEEcCCC-CCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEEE-
Q 031533 56 PNSYVFIVDMPGI-KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALC- 133 (158)
Q Consensus 56 ~d~y~i~~~lPG~-~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~- 133 (158)
.+.++|+|.|||+ +..+|++.+. +..|.|..... .|...+.||..||.+..+|.|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~-~~~l~l~~~~~----------------------~y~L~l~LP~~V~~~~~~Akf~ 316 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVS-EDRLSLSSPKP----------------------KYRLDLPLPYPVDEDNGKAKFD 316 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEe-CCEEEEEeCCC----------------------ceEEEccCCCcccCCCceEEEc
Confidence 5789999999999 8899999999 48999985311 277899999999999999999
Q ss_pred -eCcEEEEEEe
Q 031533 134 -QDGVLTVTVE 143 (158)
Q Consensus 134 -~~GiL~I~lp 143 (158)
+.++|+|+||
T Consensus 317 ~~~~~L~vtlp 327 (328)
T PF08190_consen 317 KKTKTLTVTLP 327 (328)
T ss_pred cCCCEEEEEEE
Confidence 4699999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.20 E-value=2e-05 Score=51.62 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=64.1
Q ss_pred eEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeE
Q 031533 51 DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130 (158)
Q Consensus 51 ~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 130 (158)
|+.++++...|.+.++|+.++++.|.+.+ +.|.+++..... ..|.-.+.|...|+++..+
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~~-------------------~~y~~~~~L~~~I~p~~s~ 60 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPSG-------------------NDYSLKLHLLHPIVPEQSS 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCCC-------------------CcEEEeeecCceecchhcE
Confidence 46788999999999999999999999994 899999764211 1256677899999999888
Q ss_pred EEEeCcEEEEEEecCCCC
Q 031533 131 ALCQDGVLTVTVEKVPPP 148 (158)
Q Consensus 131 A~~~~GiL~I~lpK~~~~ 148 (158)
.....+-+.|.|.|.++.
T Consensus 61 ~~v~~~kiei~L~K~~~~ 78 (84)
T cd06489 61 YKILSTKIEIKLKKTEAI 78 (84)
T ss_pred EEEeCcEEEEEEEcCCCC
Confidence 888888899999998653
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.06 E-value=7.6e-05 Score=48.71 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=60.8
Q ss_pred eeEEEeCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCC
Q 031533 50 ADVMEYPNSYVFIVDMP-GIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDK 128 (158)
Q Consensus 50 ~~i~e~~d~y~i~~~lP-G~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 128 (158)
+.+.++++...|.+.+| ++.+++++|.+.+ +.|.|+... .. +.-.-.|...|+++.
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~--~~--------------------~~l~~~L~~~I~~~~ 57 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG--GE--------------------PLLDGELYAKVKVDE 57 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC--CC--------------------ceEcCcccCceeEcC
Confidence 35788999999999997 6899999999995 899998631 01 122346889999999
Q ss_pred eEEEEeC-cEEEEEEecCCC
Q 031533 129 ISALCQD-GVLTVTVEKVPP 147 (158)
Q Consensus 129 i~A~~~~-GiL~I~lpK~~~ 147 (158)
.+..+.+ ..|.|+|+|.++
T Consensus 58 s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 58 STWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEEeCCCEEEEEEEECCC
Confidence 8888888 999999999875
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.99 E-value=0.00014 Score=48.10 Aligned_cols=80 Identities=18% Similarity=0.093 Sum_probs=66.4
Q ss_pred CeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCC
Q 031533 49 PADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDK 128 (158)
Q Consensus 49 ~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 128 (158)
++++.++++...|.+.+.|+.+++++|.+++ +.|.++...... ..|...+.|-..|+++.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~~-------------------~~y~~~l~L~~~I~~~~ 61 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEGN-------------------KEFQLDIELWGVIDVEK 61 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCCC-------------------ceEEEEeeccceEChhH
Confidence 4689999999999999999999999999994 788887543211 12667789999999999
Q ss_pred eEEEEeCcEEEEEEecCCCC
Q 031533 129 ISALCQDGVLTVTVEKVPPP 148 (158)
Q Consensus 129 i~A~~~~GiL~I~lpK~~~~ 148 (158)
.+.....+-+.|+|.|.++.
T Consensus 62 s~~~v~~~kvei~L~K~~~~ 81 (87)
T cd06488 62 SSVNMLPTKVEIKLRKAEPG 81 (87)
T ss_pred cEEEecCcEEEEEEEeCCCC
Confidence 88888999999999998753
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.98 E-value=0.00016 Score=47.99 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=63.9
Q ss_pred CeeEEEeCCeEEEEEEcCCCCC---CCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEE-CCCCc
Q 031533 49 PADVMEYPNSYVFIVDMPGIKA---SEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFV-LPDNA 124 (158)
Q Consensus 49 ~~~i~e~~d~y~i~~~lPG~~~---~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~-LP~~v 124 (158)
.+++.++++...|.+.+|+..+ ++++|.+. .+.|.|++... . +. .|.-.+. |-..|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~-~~~l~v~~~~~--~-------~~----------~~~~~~~~L~~~I 62 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFT-ERSFELKVHDL--N-------GK----------NYRFTINRLLKKI 62 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEec-CCEEEEEEECC--C-------Cc----------EEEEEehHhhCcc
Confidence 4688999999999999999976 99999999 48999987421 1 11 1444554 88999
Q ss_pred ccCCeEEEEeCcEEEEEEecCCC
Q 031533 125 NVDKISALCQDGVLTVTVEKVPP 147 (158)
Q Consensus 125 d~~~i~A~~~~GiL~I~lpK~~~ 147 (158)
+++..+.....+-+.|+|.|.++
T Consensus 63 ~~e~s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 63 DPEKSSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred CccccEEEEeCCEEEEEEEeCCC
Confidence 99999888999999999999875
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.88 E-value=0.00037 Score=45.80 Aligned_cols=76 Identities=8% Similarity=0.124 Sum_probs=59.3
Q ss_pred eeEEEeCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCC
Q 031533 50 ADVMEYPNSYVFIVDMP-GIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDK 128 (158)
Q Consensus 50 ~~i~e~~d~y~i~~~lP-G~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 128 (158)
+++.++.+...|.+.+| |+.+++++|++.. +.|.+... ... . + ..-.|...|+++.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~--~~~---------~----------~-~~g~L~~~I~~d~ 57 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALK--DQA---------P----------L-LEGKLYSSIDHES 57 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeC--CCC---------e----------E-EeCcccCcccccC
Confidence 35788999999999996 9999999999994 88988742 111 0 1 2337889999998
Q ss_pred eEEEEeCc-EEEEEEecCCCC
Q 031533 129 ISALCQDG-VLTVTVEKVPPP 148 (158)
Q Consensus 129 i~A~~~~G-iL~I~lpK~~~~ 148 (158)
-+-..++| .|.|.|.|.++.
T Consensus 58 Stw~i~~~~~l~i~L~K~~~~ 78 (85)
T cd06493 58 STWIIKENKSLEVSLIKKDEG 78 (85)
T ss_pred cEEEEeCCCEEEEEEEECCCC
Confidence 88777666 799999998753
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.49 E-value=0.0033 Score=43.25 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=61.5
Q ss_pred CCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031533 48 TPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVD 127 (158)
Q Consensus 48 p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
|++.+.+..+...|+|.+|+ .++++|.+++ +.|.++|.-. . +.. |.-.+.|=..|+++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~--~-------g~~----------y~~~l~l~~~I~pe 59 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG--D-------NVK----------IYNEIELYDRVDPN 59 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC--C-------CcE----------EEEEEEeecccCcc
Confidence 67899999999999999999 5899999994 7999998421 1 111 44567788899999
Q ss_pred CeEEEEeCcEEEEEEecCCC
Q 031533 128 KISALCQDGVLTVTVEKVPP 147 (158)
Q Consensus 128 ~i~A~~~~GiL~I~lpK~~~ 147 (158)
..+.....--+.|.|.|.+.
T Consensus 60 ~Sk~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 60 DSKHKRTDRSILCCLRKGKE 79 (106)
T ss_pred cCeEEeCCceEEEEEEeCCC
Confidence 87777767778889999763
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.28 E-value=0.0039 Score=41.83 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=60.3
Q ss_pred CCCeeEEEeCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcc
Q 031533 47 ATPADVMEYPNSYVFIVDMP-GIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNAN 125 (158)
Q Consensus 47 ~p~~~i~e~~d~y~i~~~lP-G~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd 125 (158)
.+.+.+.++.+...|.+.+| |+..++++|.+.. +.|.|..+ . ..+. .| .|...|+
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~----g--------~~~l-----~G------~L~~~I~ 60 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVK----G--------QEVL-----KG------KLFDSVV 60 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEEC----C--------EEEE-----cC------cccCccC
Confidence 46789999999999999986 8999999999994 89998841 0 1111 12 5788888
Q ss_pred cCCeEEEEeCcE-EEEEEecCCC
Q 031533 126 VDKISALCQDGV-LTVTVEKVPP 147 (158)
Q Consensus 126 ~~~i~A~~~~Gi-L~I~lpK~~~ 147 (158)
++.-.-.+++|- |.|.|.|...
T Consensus 61 ~destWtled~k~l~I~L~K~~~ 83 (93)
T cd06494 61 ADECTWTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred cccCEEEEECCcEEEEEEEeCCC
Confidence 888888887765 8999999753
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.15 E-value=0.0042 Score=51.27 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=67.0
Q ss_pred CCCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCccc
Q 031533 47 ATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANV 126 (158)
Q Consensus 47 ~p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~ 126 (158)
.+..+++++++...|.|.+.|+.++++.|.+.+ +.|.|+...... ..|...+.|-..|++
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~~-------------------~~y~~~~~L~~~I~p 215 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPGE-------------------DAYHLQPRLFGKIIP 215 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCCC-------------------cceeecccccccccc
Confidence 357899999999999999999999999999994 788888643211 125556789999999
Q ss_pred CCeEEEEeCcEEEEEEecCCCC
Q 031533 127 DKISALCQDGVLTVTVEKVPPP 148 (158)
Q Consensus 127 ~~i~A~~~~GiL~I~lpK~~~~ 148 (158)
+..+....-.-+.|+|.|.+..
T Consensus 216 ~~s~~~v~~~Kiei~l~K~~~~ 237 (356)
T PLN03088 216 DKCKYEVLSTKIEIRLAKAEPI 237 (356)
T ss_pred cccEEEEecceEEEEEecCCCC
Confidence 9988888777999999998653
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.10 E-value=0.0028 Score=47.30 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=62.7
Q ss_pred CCCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCccc
Q 031533 47 ATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANV 126 (158)
Q Consensus 47 ~p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~ 126 (158)
.++.|++++.+..+|.+..+++.+++++|.+.+ +.|.|..+..... .|.....|-.+|.+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g~-------------------~~~l~~~L~~~I~p 62 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSGS-------------------EYNLQLKLYHEIIP 62 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCch-------------------hhhhhHHhcccccc
Confidence 457899999999999999999999999999995 8999887654222 14444557778888
Q ss_pred CCeEEEEeCcEEEEEEecCC
Q 031533 127 DKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 127 ~~i~A~~~~GiL~I~lpK~~ 146 (158)
+..+-..----+.|+|+|.+
T Consensus 63 e~~s~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 63 EKSSFKVFSTKVEITLAKAE 82 (196)
T ss_pred cceeeEeeeeeEEEEecccc
Confidence 87766666677888888854
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.89 E-value=0.03 Score=36.91 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=56.3
Q ss_pred eeEEEeCCeEEEEEEcCCC--CCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031533 50 ADVMEYPNSYVFIVDMPGI--KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVD 127 (158)
Q Consensus 50 ~~i~e~~d~y~i~~~lPG~--~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
.|++++++...|.+...+. ++..+.+... .+.|.|+-... .. .|...+.|=..|+++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~-~~~l~v~~~~~-~~-------------------~~~~~~~L~~~I~~~ 59 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQ-QRELRVEIILG-DK-------------------SYLLHLDLSNEVQWP 59 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECC-CCEEEEEEECC-Cc-------------------eEEEeeeccccCCCC
Confidence 3789999999999999864 4455556656 36888875433 11 166777888899877
Q ss_pred CeEEEEe--CcEEEEEEecCCCCC
Q 031533 128 KISALCQ--DGVLTVTVEKVPPPQ 149 (158)
Q Consensus 128 ~i~A~~~--~GiL~I~lpK~~~~~ 149 (158)
. +..+. -|-+.|+|.|.++..
T Consensus 60 ~-~~~~~~~~~KVEI~L~K~e~~~ 82 (87)
T cd06490 60 C-EVRISTETGKIELVLKKKEPEK 82 (87)
T ss_pred c-EEEEcccCceEEEEEEcCCCCc
Confidence 5 55554 789999999987543
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.57 E-value=0.033 Score=36.79 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=54.9
Q ss_pred eEEEeCCeEEEEEEcC-C--CCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031533 51 DVMEYPNSYVFIVDMP-G--IKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVD 127 (158)
Q Consensus 51 ~i~e~~d~y~i~~~lP-G--~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
.+.++.+...|.+.+| | .++.+++|.+.. +.|.|..+- ... + -.=.|...|+++
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g------------~~~---------~-i~G~L~~~V~~d 58 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKG------------QPP---------I-IDGELYNEVKVE 58 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECC------------Cce---------E-EeCcccCccccc
Confidence 3567888899999996 3 789999999994 788886321 011 1 122578889998
Q ss_pred CeEEEEeCc-EEEEEEecCCC
Q 031533 128 KISALCQDG-VLTVTVEKVPP 147 (158)
Q Consensus 128 ~i~A~~~~G-iL~I~lpK~~~ 147 (158)
.-.-.+++| .|.|+|-|...
T Consensus 59 es~Wtled~~~l~i~L~K~~~ 79 (87)
T cd06492 59 ESSWLIEDGKVVTVNLEKINK 79 (87)
T ss_pred ccEEEEeCCCEEEEEEEECCC
Confidence 888788886 89999999854
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.34 E-value=0.11 Score=35.49 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=59.8
Q ss_pred CCCeeEEEeCCeEEEEEEcC-CC-CCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCc
Q 031533 47 ATPADVMEYPNSYVFIVDMP-GI-KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNA 124 (158)
Q Consensus 47 ~p~~~i~e~~d~y~i~~~lP-G~-~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~v 124 (158)
...+.+.++-+...|.+.|| |. +..+|+|.+. ...|.|.-...... ..+. .| .|+..|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~-~~~l~v~~~~~~~~--------~~~i-----~G------~L~~~V 63 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQ-SSSIRVSVRDGGGE--------KVLM-----EG------EFTHKI 63 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEE-cCEEEEEEecCCCC--------ceEE-----eC------cccCcc
Confidence 46789999999999999999 54 5789999999 48898885310000 1111 12 578889
Q ss_pred ccCCeEEEEeCc-EEEEEEecCCC
Q 031533 125 NVDKISALCQDG-VLTVTVEKVPP 147 (158)
Q Consensus 125 d~~~i~A~~~~G-iL~I~lpK~~~ 147 (158)
+++.-.-.+++| .|.|+|-|...
T Consensus 64 ~~des~Wtled~~~l~I~L~K~~~ 87 (102)
T cd06495 64 NTENSLWSLEPGKCVLLSLSKCSE 87 (102)
T ss_pred cCccceEEEeCCCEEEEEEEECCC
Confidence 888887788875 58999999753
No 42
>PF14913 DPCD: DPCD protein family
Probab=91.10 E-value=2.7 Score=31.83 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=53.4
Q ss_pred CCCeeEEEeCCeEEEEEEcCCCCCCCeEEEEe-cCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCC---
Q 031533 47 ATPADVMEYPNSYVFIVDMPGIKASEIKVQVE-SENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPD--- 122 (158)
Q Consensus 47 ~p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~-~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~--- 122 (158)
.|.+-=.++...|..+|.==-..++..+|+++ +.+.++|+.. ...|.+.|.+|+
T Consensus 86 nP~~~r~dTk~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTt----------------------NKKYyKk~~IPDl~R 143 (194)
T PF14913_consen 86 NPIFVRRDTKTSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTT----------------------NKKYYKKFSIPDLDR 143 (194)
T ss_pred CCEEEEEcCccceEEEEccCCCCccceEEEEcCCCcEEEEECc----------------------CccceeEecCCcHHh
Confidence 34444456677888887532348888999998 3356888732 112668899995
Q ss_pred ---CcccCCeEEEEeCcEEEEEEec
Q 031533 123 ---NANVDKISALCQDGVLTVTVEK 144 (158)
Q Consensus 123 ---~vd~~~i~A~~~~GiL~I~lpK 144 (158)
+.+.+.++..+.|..|.|+..|
T Consensus 144 ~~l~l~~~~ls~~h~nNTLIIsYkK 168 (194)
T PF14913_consen 144 CGLPLEQSALSFAHQNNTLIISYKK 168 (194)
T ss_pred hCCCcchhhceeeeecCeEEEEecC
Confidence 3466778888999999999987
No 43
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=89.03 E-value=3.3 Score=32.92 Aligned_cols=89 Identities=15% Similarity=0.080 Sum_probs=72.4
Q ss_pred CCCCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcc
Q 031533 46 AATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNAN 125 (158)
Q Consensus 46 ~~p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd 125 (158)
..-+.|+.+++...+|.|+.-|.-++.-.|..+ +..|.|.-.-... ...|...+.|=.-|+
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean-~~~l~V~ivf~~g------------------na~fd~d~kLwgvvn 273 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEAN-GTTLHVSIVFGFG------------------NASFDLDYKLWGVVN 273 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeC-CeEEEEEEEecCC------------------Cceeeccceeeeeec
Confidence 345789999999999999999999999889988 7888888553211 234788888888899
Q ss_pred cCCeEEEEeCcEEEEEEecCCCCCCeeE
Q 031533 126 VDKISALCQDGVLTVTVEKVPPPQPKTI 153 (158)
Q Consensus 126 ~~~i~A~~~~GiL~I~lpK~~~~~~~~i 153 (158)
.++.++.+-.--+.|+|+|.++....++
T Consensus 274 ve~s~v~m~~tkVEIsl~k~ep~sWa~L 301 (320)
T KOG1667|consen 274 VEESSVVMGETKVEISLKKAEPGSWARL 301 (320)
T ss_pred hhhceEEeecceEEEEEeccCCCCcccc
Confidence 9999999999999999999987655433
No 44
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=88.99 E-value=2.7 Score=31.40 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=59.8
Q ss_pred CCCCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcc
Q 031533 46 AATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNAN 125 (158)
Q Consensus 46 ~~p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd 125 (158)
..|.+.+.+..+-..+++.++. ..+..|.++ +.+|+++|+..... ++ |...|.|=..||
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e-~~~l~fs~k~~~d~----------~~--------~~~~ief~~eId 64 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVED--AKDVHVNLE-PSKLTFSCKSGADN----------HK--------YENEIEFFDEID 64 (180)
T ss_pred cCCcchhhhhcCeEEEEEEecc--Cccceeecc-ccEEEEEeccCCCc----------ee--------eEEeeehhhhcC
Confidence 3578888999999999999875 456667777 57999998754222 11 567788999999
Q ss_pred cCCeEEEEeCcEEEEEEecCCCC
Q 031533 126 VDKISALCQDGVLTVTVEKVPPP 148 (158)
Q Consensus 126 ~~~i~A~~~~GiL~I~lpK~~~~ 148 (158)
++..+.+-. +.+..+++++...
T Consensus 65 pe~sk~k~~-~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 65 PEKSKHKRT-SRSIFCILRKKEL 86 (180)
T ss_pred Hhhcccccc-ceEEEEEEEcccc
Confidence 998876655 7777777776543
No 45
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=88.36 E-value=6.4 Score=28.14 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=52.2
Q ss_pred CCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccC
Q 031533 48 TPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVD 127 (158)
Q Consensus 48 p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 127 (158)
..+.|...++ ..+++.. ..+.++++.+ |++|.|+.+..... -...+..... ...-.-.+.||.....+
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~-~~~L~I~~~~~~~~------~~~~~~~~~~-~~~~~i~I~lP~~~~l~ 133 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVE-GGTLTIKSKDRESF------FFKGFNFNNS-DNKSKITIYLPKDYKLD 133 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEc-CCEEEEEEeccccc------ccceEEEccc-CCCcEEEEEECCCCcee
Confidence 4566666444 4445555 2226888888 68999997622111 0112222211 33467789999998888
Q ss_pred CeEEEEeCcEEEEEE
Q 031533 128 KISALCQDGVLTVTV 142 (158)
Q Consensus 128 ~i~A~~~~GiL~I~l 142 (158)
+++....+|-+.|.=
T Consensus 134 ~i~i~~~~G~i~i~~ 148 (166)
T PF13349_consen 134 KIDIKTSSGDITIED 148 (166)
T ss_pred EEEEEeccccEEEEc
Confidence 999999999998753
No 46
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=86.21 E-value=0.38 Score=38.59 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=62.0
Q ss_pred CeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCC
Q 031533 49 PADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDK 128 (158)
Q Consensus 49 ~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 128 (158)
.++..++.+...|-+.-|-+..++|++.++ +++|.|+-+..... . -+.-..+|-..|+++.
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e-~NTL~I~~q~~~~~----------~--------~~~~~~~Ly~ev~P~~ 238 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLE-GNTLSISYQPRRLR----------L--------WNDITISLYKEVYPDI 238 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeec-CCcceeeeeccccc----------h--------HHHhhhhhhhhcCcch
Confidence 467777888888888889999999999999 79999997643332 0 1455677888888887
Q ss_pred eEEEEeCcEEEEEEecCCCCC
Q 031533 129 ISALCQDGVLTVTVEKVPPPQ 149 (158)
Q Consensus 129 i~A~~~~GiL~I~lpK~~~~~ 149 (158)
.+-..--..+.|.+.|.+..+
T Consensus 239 ~s~k~fsK~~e~~l~KV~~v~ 259 (368)
T COG5091 239 RSIKSFSKRVEVHLRKVEMVR 259 (368)
T ss_pred hhhhhcchhheehhhhhhhhh
Confidence 765555578888888876433
No 47
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=83.07 E-value=13 Score=27.89 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=58.7
Q ss_pred cccCCCCeeEEEeCCeEEEEEEc-CCC-CCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEEC
Q 031533 43 KAMAATPADVMEYPNSYVFIVDM-PGI-KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVL 120 (158)
Q Consensus 43 ~~~~~p~~~i~e~~d~y~i~~~l-PG~-~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~L 120 (158)
.+...+-+.+.++=....|.|-+ ||+ +..+|.|.+. .+.|.|.-+-.. -+. .=.|
T Consensus 14 ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq-~~hI~V~~kg~~-----------~il-----------dG~L 70 (179)
T KOG2265|consen 14 NGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQ-SKHIKVGLKGQP-----------PIL-----------DGEL 70 (179)
T ss_pred CCccccceeeeeehhheEEEeecCCCCcccceEEEEee-eeEEEEecCCCC-----------cee-----------cCcc
Confidence 33445778899988899999888 577 8889999999 578888732111 111 2246
Q ss_pred CCCcccCCeEEEEeCcEEEEEEecCCC
Q 031533 121 PDNANVDKISALCQDGVLTVTVEKVPP 147 (158)
Q Consensus 121 P~~vd~~~i~A~~~~GiL~I~lpK~~~ 147 (158)
...|+++...-.+++|.+.|.+-++..
T Consensus 71 ~~~vk~des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 71 SHSVKVDESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred ccccccccceEEecCCEEEEEEeeccc
Confidence 677888888888999888877766543
No 48
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=82.45 E-value=3.2 Score=27.34 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=29.1
Q ss_pred eEEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 113 KFMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
.|.-...|| .++.+.|+-.+.+|.|+|..-+..
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 366788999 889999999999999999998754
No 49
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=79.84 E-value=5.1 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=30.2
Q ss_pred ceEEEEEECCCCcccCCeEEEEeCcEEEEEEecCCC
Q 031533 112 GKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPP 147 (158)
Q Consensus 112 ~~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~~ 147 (158)
..|.-.+.|| .+..+.|+-.++++.|+|+..+...
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~ 45 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADE 45 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 4588899999 7899999999999999999877654
No 50
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=77.56 E-value=5.8 Score=25.84 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=28.8
Q ss_pred EEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 114 FMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
|.-.+.|| .++++.|+-.+++|.|+|+.-+..
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 9 FQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred EEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 77889999 888999999999999999998754
No 51
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=77.19 E-value=6.7 Score=25.55 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=29.3
Q ss_pred ceEEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 112 GKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 112 ~~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
..|.-.+.|| .++++.|+-...+|.|+|+.-+.+
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHSE 43 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 3478899999 889999999999999999997643
No 52
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=77.17 E-value=12 Score=23.01 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=34.1
Q ss_pred CCCeeEE-EeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEe
Q 031533 47 ATPADVM-EYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERK 90 (158)
Q Consensus 47 ~p~~~i~-e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~ 90 (158)
..++.+. -....|.|++..||+.+-.-.|.+..|....|+.+.+
T Consensus 24 ~tp~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 24 TTPLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cCcceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 3445665 4577999999999999988888888667888887654
No 53
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=77.05 E-value=6.4 Score=25.54 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=28.6
Q ss_pred eEEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 113 KFMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
.|.-.+.|| .+.++.|+-.+++|.|+|..-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477889999 888999999999999999997643
No 54
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=76.79 E-value=7.4 Score=25.10 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=28.6
Q ss_pred eEEEEEECCCCcccCCeEEEEeCcEEEEEEecC
Q 031533 113 KFMRKFVLPDNANVDKISALCQDGVLTVTVEKV 145 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~ 145 (158)
.|.-.+.|| .++++.|+-.+.+|.|+|..-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 478899999 89999999999999999999764
No 55
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=75.70 E-value=7.7 Score=25.25 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=28.9
Q ss_pred eEEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 113 KFMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
.|.-.+.|| .++.+.|+-.++++.|+|..-+..
T Consensus 11 ~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 11 EYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477899999 799999999999999999887753
No 56
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=73.06 E-value=8.1 Score=24.71 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=30.0
Q ss_pred eEEEEEECCCCcccCCeEEEEeCcEEEEEEecCCC
Q 031533 113 KFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPP 147 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~~ 147 (158)
.|.-.+.|| .+.++.|+-.++++.|+|+..+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 488899999 5899999999999999999987654
No 57
>PRK10743 heat shock protein IbpA; Provisional
Probab=70.77 E-value=12 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=26.8
Q ss_pred EEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 114 FMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
|.-...|| .++.+.|+-.+++|.|+|..-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 55667799 888999999999999999987654
No 58
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=70.53 E-value=12 Score=24.26 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=28.9
Q ss_pred eEEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 113 KFMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
.|.-.+.|| .++++.|+-..++|.|+|..-|..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 377789999 889999999999999999987753
No 59
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=70.43 E-value=20 Score=27.19 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=58.0
Q ss_pred CeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCC
Q 031533 49 PADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDK 128 (158)
Q Consensus 49 ~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 128 (158)
.+-+-++++...+.+.|-|+..++|.|.+. .+.|-+...-- .+.+|.. -.=.|-.+|++++
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ft-p~Sldl~v~dl---------qGK~y~~---------~vnnLlk~I~vEk 136 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFT-PMSLDLKVHDL---------QGKNYRM---------IVNNLLKPISVEK 136 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEec-ccceeeeeeec---------CCcceee---------ehhhhccccChhh
Confidence 366778889999999999999999999999 57777774321 1122211 1223557788888
Q ss_pred eEEEEeCcEEEEEEecCCCC
Q 031533 129 ISALCQDGVLTVTVEKVPPP 148 (158)
Q Consensus 129 i~A~~~~GiL~I~lpK~~~~ 148 (158)
-+...+-....|.+.|.+..
T Consensus 137 s~~kvKtd~v~I~~kkVe~~ 156 (224)
T KOG3260|consen 137 SSKKVKTDTVLILCKKVENT 156 (224)
T ss_pred cccccccceEEEeehhhhcc
Confidence 87788888888888776543
No 60
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=69.16 E-value=12 Score=24.33 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=28.5
Q ss_pred eEEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 113 KFMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
.|.-.+.|| .+.++.|+-.++++.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 377789999 888999999999999999997643
No 61
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=69.09 E-value=17 Score=23.63 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=29.6
Q ss_pred ceEEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 112 GKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 112 ~~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
..|.-.+.|| .++++.|+-.+.++.|+|+.-+..
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 3488899999 899999999999999999997754
No 62
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=69.09 E-value=14 Score=23.98 Aligned_cols=33 Identities=6% Similarity=0.113 Sum_probs=28.6
Q ss_pred eEEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 113 KFMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
.|.-.+.|| .++++.|+-.+.++.|+|..-+..
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHEE 40 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 478889998 889999999999999999996543
No 63
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=67.92 E-value=19 Score=23.44 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=26.8
Q ss_pred eEEEEEECCCCcccCCeEEEEeC-cEEEEEEecC
Q 031533 113 KFMRKFVLPDNANVDKISALCQD-GVLTVTVEKV 145 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~-GiL~I~lpK~ 145 (158)
.|.-.+.|| .+..+.|+-.+.+ ++|+|+.-+.
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~ 42 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEVEDGRVLRISGERK 42 (92)
T ss_pred eEEEEEECC-CCChHhEEEEEeCCCEEEEEEEec
Confidence 477889999 6899999999976 4999999764
No 64
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=66.95 E-value=16 Score=22.89 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=29.6
Q ss_pred eEEEEEECCCCcccCCeEEEEeCcEEEEEEecCCC
Q 031533 113 KFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPP 147 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~~ 147 (158)
.|.-.+.|| .++.+.|+-.+.++.|.|+..+...
T Consensus 8 ~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~ 41 (88)
T cd06464 8 AYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEE 41 (88)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 478899999 4899999999999999999888654
No 65
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=66.30 E-value=20 Score=23.52 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=27.5
Q ss_pred ceEEEEEECCCCcccCCeEEEEeCcEEEEEEecC
Q 031533 112 GKFMRKFVLPDNANVDKISALCQDGVLTVTVEKV 145 (158)
Q Consensus 112 ~~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~ 145 (158)
..|.-.+.|| .++.+.|+-.++++.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 3578899999 88899999999999999999876
No 66
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=65.48 E-value=24 Score=21.84 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=27.1
Q ss_pred CeEEEEEEcCC-CCCCCeEEEEecCcEEEEEEEE
Q 031533 57 NSYVFIVDMPG-IKASEIKVQVESENVLVVSGER 89 (158)
Q Consensus 57 d~y~i~~~lPG-~~~~~i~V~~~~~~~L~I~g~~ 89 (158)
+.|.+.++||+ +++++.+..+.+ +.|.|+-.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K 68 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGN-GVLVFTLVK 68 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeC-CEEEEEEEe
Confidence 56899999987 699999999995 689998655
No 67
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=63.37 E-value=18 Score=23.95 Aligned_cols=31 Identities=10% Similarity=0.399 Sum_probs=26.3
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEecCcEEEEEE
Q 031533 57 NSYVFIVDMP-GIKASEIKVQVESENVLVVSG 87 (158)
Q Consensus 57 d~y~i~~~lP-G~~~~~i~V~~~~~~~L~I~g 87 (158)
..|.=.+.|| +++.++|+-.+...+.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 5678889998 799999999999336999986
No 68
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=63.01 E-value=37 Score=22.76 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=32.2
Q ss_pred ccCCCCeeEEEeCCeEEEEEEcCCC-----CCCCeEEEEecCcEEEEE
Q 031533 44 AMAATPADVMEYPNSYVFIVDMPGI-----KASEIKVQVESENVLVVS 86 (158)
Q Consensus 44 ~~~~p~~~i~e~~d~y~i~~~lPG~-----~~~~i~V~~~~~~~L~I~ 86 (158)
....|.+.|.++++.|.|.+--+.- .++...|.-.+ +.+.|.
T Consensus 22 v~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~-g~~fI~ 68 (95)
T PF12992_consen 22 VNGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEED-GNLFIE 68 (95)
T ss_pred cCCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeC-CEEEEe
Confidence 3447999999999999999977654 67777777665 466665
No 69
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=62.99 E-value=31 Score=24.83 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=27.1
Q ss_pred EEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 114 FMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
|.-.+.|| .++.+.|+-.+++|.|+|+.-+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 56677899 888999999999999999997643
No 70
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=58.10 E-value=61 Score=24.31 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=31.2
Q ss_pred CCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEEEeCcEEEEEEe
Q 031533 69 KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVE 143 (158)
Q Consensus 69 ~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lp 143 (158)
=|+.++|+++ ++.++++|. .|+..+.|.-| .++...++|.|.|...
T Consensus 12 IP~~V~v~i~-~~~v~VkGp----------------------~G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEIE-GLVVTVKGP----------------------KGELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEEE-CCEEEEECC----------------------CeEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 3688999999 589999975 34444444322 3455678888888754
No 71
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=56.48 E-value=26 Score=24.92 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=28.1
Q ss_pred EEEEEECCCCcccCCeEEEEeCcEEEEEEecCC
Q 031533 114 FMRKFVLPDNANVDKISALCQDGVLTVTVEKVP 146 (158)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~~ 146 (158)
|.-.+.|| .++.+.|+-.+.++.|+|+.-+..
T Consensus 52 ~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 52 YRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 66778899 889999999999999999998865
No 72
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=56.32 E-value=12 Score=22.98 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=15.3
Q ss_pred CCeEEEEeCcEEEEEEecCCCCCCeeEEEe
Q 031533 127 DKISALCQDGVLTVTVEKVPPPQPKTIQVQ 156 (158)
Q Consensus 127 ~~i~A~~~~GiL~I~lpK~~~~~~~~i~I~ 156 (158)
..|.|.|+||+|.-.=| ..-.+..++.|.
T Consensus 3 ~~I~aiYe~GvlkPl~~-~~L~Eg~~V~i~ 31 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP-VDLPEGEEVKIT 31 (60)
T ss_dssp --EEEEEETTEEEECS------TTEEEEEE
T ss_pred ceEEEEEECCEEEECCC-CCCCCCCEEEEE
Confidence 45899999999986422 222333445444
No 73
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=56.32 E-value=97 Score=24.36 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=37.3
Q ss_pred EEcCCCCCCCeE-EEEe-cCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEEEeCcEEEE
Q 031533 63 VDMPGIKASEIK-VQVE-SENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTV 140 (158)
Q Consensus 63 ~~lPG~~~~~i~-V~~~-~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GiL~I 140 (158)
-.|||+..+ ++ |+++ +.++|.... ++...++.-.. .|..-|+++|...-|+|.|.. ..+|.+.|
T Consensus 15 ~~l~g~~~e-~SGLTy~pd~~tLfaV~-----------d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y-~g~~~~vl 80 (248)
T PF06977_consen 15 KPLPGILDE-LSGLTYNPDTGTLFAVQ-----------DEPGEIYELSL-DGKVLRRIPLDGFGDYEGITY-LGNGRYVL 80 (248)
T ss_dssp EE-TT--S--EEEEEEETTTTEEEEEE-----------TTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEE
T ss_pred eECCCccCC-ccccEEcCCCCeEEEEE-----------CCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEE-ECCCEEEE
Confidence 579999887 54 7776 445665542 33344443333 578899999999889999874 57887776
Q ss_pred E
Q 031533 141 T 141 (158)
Q Consensus 141 ~ 141 (158)
+
T Consensus 81 ~ 81 (248)
T PF06977_consen 81 S 81 (248)
T ss_dssp E
T ss_pred E
Confidence 4
No 74
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=55.93 E-value=74 Score=23.58 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=30.6
Q ss_pred CCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEEEeCcEEEEEEe
Q 031533 70 ASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVE 143 (158)
Q Consensus 70 ~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lp 143 (158)
|++++|++. ++.++|+|. .|+..+.+. |. .+....+++.|.|..+
T Consensus 7 P~~V~v~i~-~~~i~vkGp----------------------~G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIE-GNIVTVKGP----------------------KGEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEe-CCEEEEECC----------------------CeEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 578999999 589999975 343444442 33 3455678888888754
No 75
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=53.96 E-value=36 Score=20.16 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=20.6
Q ss_pred CCCCCCCeEEEEecCcEEEEEEEEecCC
Q 031533 66 PGIKASEIKVQVESENVLVVSGERKRDP 93 (158)
Q Consensus 66 PG~~~~~i~V~~~~~~~L~I~g~~~~~~ 93 (158)
++++..+|+|.+. ++.+.++|......
T Consensus 12 ~~~~~~~i~v~v~-~g~v~L~G~v~s~~ 38 (64)
T PF04972_consen 12 PWLPDSNISVSVE-NGVVTLSGEVPSQE 38 (64)
T ss_dssp -CTT-TTEEEEEE-CTEEEEEEEESSCH
T ss_pred cccCCCeEEEEEE-CCEEEEEeeCcHHH
Confidence 4677779999999 47999999986553
No 76
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=52.96 E-value=68 Score=24.25 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=32.0
Q ss_pred CCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEEEeCcEEEEEEe
Q 031533 69 KASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVE 143 (158)
Q Consensus 69 ~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lp 143 (158)
=|++++|++. ++.++|+|. .|+..+.| |..- ..+....++|.|.|..+
T Consensus 12 IP~~V~V~i~-~~~v~VkGp----------------------~G~L~~~~--~~~~--~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 12 IPEGVTVTVK-SRKVTVTGK----------------------YGELTRSF--RHLP--VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCCEEEEE-CCEEEEECC----------------------CceEEEEe--cCCC--ceEEEEeCCCEEEEEeC
Confidence 3689999999 589999975 34445544 3211 24566678888887754
No 77
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=52.67 E-value=76 Score=23.52 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=30.3
Q ss_pred CCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEEEeCcEEEEEEe
Q 031533 70 ASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVE 143 (158)
Q Consensus 70 ~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lp 143 (158)
|++|+|+++ ++.++|+|. .|...+.+ |.. +....+++.|.|...
T Consensus 11 P~~V~v~~~-~~~v~v~Gp----------------------~G~l~~~l--~~~-----i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTID-GNVVTVKGP----------------------KGELSRTL--HPG-----VTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEe-CCEEEEEcC----------------------CeEEEEEc--CCC-----eEEEEECCEEEEEec
Confidence 678999998 589999975 34344444 543 345568888877754
No 78
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=50.26 E-value=72 Score=23.72 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=30.1
Q ss_pred CCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcccCCeEEEEeCcEEEEEEe
Q 031533 70 ASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVE 143 (158)
Q Consensus 70 ~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lp 143 (158)
|++|+|++. ++.|+|+|. .|...+.| |..+ ....+++.|.|...
T Consensus 12 P~~V~v~~~-~~~v~vkGp----------------------~G~l~~~~--~~~v-----~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTIN-GNVVTVKGP----------------------KGELSRTL--NPDV-----TVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEE-CCEEEEECC----------------------CEEEEEEc--CCCe-----EEEEECCEEEEEcC
Confidence 578999999 589999975 34455555 4433 44567887777654
No 79
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=45.22 E-value=33 Score=25.54 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=26.2
Q ss_pred EEEcC-CCCCCCeEEEEecCcEEEEEEEEecCC
Q 031533 62 IVDMP-GIKASEIKVQVESENVLVVSGERKRDP 93 (158)
Q Consensus 62 ~~~lP-G~~~~~i~V~~~~~~~L~I~g~~~~~~ 93 (158)
+.-|| |++++.|.-.++.+++|+|+|.+....
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 45565 899999999999557999999877665
No 80
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=41.57 E-value=1e+02 Score=22.98 Aligned_cols=18 Identities=17% Similarity=0.597 Sum_probs=15.0
Q ss_pred CCCeEEEEecCcEEEEEEE
Q 031533 70 ASEIKVQVESENVLVVSGE 88 (158)
Q Consensus 70 ~~~i~V~~~~~~~L~I~g~ 88 (158)
|+.|+|+++ ++.|+|+|.
T Consensus 12 P~~V~v~i~-~~~v~vkGp 29 (178)
T CHL00140 12 PDNVNVSID-DQIIKVKGP 29 (178)
T ss_pred CCCCEEEEE-CCEEEEECC
Confidence 578899998 689999975
No 81
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.14 E-value=16 Score=31.02 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=53.8
Q ss_pred CCCCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCcc
Q 031533 46 AATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNAN 125 (158)
Q Consensus 46 ~~p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd 125 (158)
..|.+.+.++++...+.+-.|-.+...+.+..-+ +.+..+ .|.|.-...+|..+.
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~------------------------~~pyflrl~~p~~~~ 56 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFS------------------------AGPYFLRLAGPGMVE 56 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhc------------------------cchhHHhhcCcchhh
Confidence 3578889999999999999996666666666653 333333 344556677786664
Q ss_pred cCCe-EEEE--eCcEEEEEEecCCCC
Q 031533 126 VDKI-SALC--QDGVLTVTVEKVPPP 148 (158)
Q Consensus 126 ~~~i-~A~~--~~GiL~I~lpK~~~~ 148 (158)
.+.. .|.| ++|...|.+||..+.
T Consensus 57 ~d~~~n~s~d~kd~~~~vK~~K~~~~ 82 (466)
T KOG3247|consen 57 DDARPNASYDAKDGYAHVKVPKFHPG 82 (466)
T ss_pred hhccccCccccccceeEEeecCCCcc
Confidence 4433 4555 689999999996653
No 82
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=40.98 E-value=1.2e+02 Score=22.87 Aligned_cols=18 Identities=22% Similarity=0.626 Sum_probs=15.5
Q ss_pred CCCeEEEEecCcEEEEEEE
Q 031533 70 ASEIKVQVESENVLVVSGE 88 (158)
Q Consensus 70 ~~~i~V~~~~~~~L~I~g~ 88 (158)
|+.++|+++ ++.|+|+|.
T Consensus 12 P~~V~V~i~-~~~ItVkGp 29 (189)
T PTZ00179 12 PEDVTVSVK-DRIVTVKGK 29 (189)
T ss_pred CCCCEEEEe-CCEEEEECC
Confidence 678999999 589999975
No 83
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=40.26 E-value=92 Score=19.41 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=26.7
Q ss_pred eEEEEEECCCCcccCCeEEEEeCcEEEEEEe
Q 031533 113 KFMRKFVLPDNANVDKISALCQDGVLTVTVE 143 (158)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GiL~I~lp 143 (158)
...-.|.+|..++.+.++..+.+.-|.|.++
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 3567888999999999999999888999886
No 84
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=38.38 E-value=35 Score=23.22 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=14.9
Q ss_pred CCeEEEEeCcEEEEEEec
Q 031533 127 DKISALCQDGVLTVTVEK 144 (158)
Q Consensus 127 ~~i~A~~~~GiL~I~lpK 144 (158)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 456788899999999983
No 85
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=38.23 E-value=66 Score=19.82 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=14.1
Q ss_pred CCCeEEEEecCcEEEEEEE
Q 031533 70 ASEIKVQVESENVLVVSGE 88 (158)
Q Consensus 70 ~~~i~V~~~~~~~L~I~g~ 88 (158)
|+.++|++. ++.+.+.|.
T Consensus 2 P~gV~v~~~-~~~i~v~G~ 19 (77)
T PF00347_consen 2 PEGVKVTIK-GNIITVKGP 19 (77)
T ss_dssp STTCEEEEE-TTEEEEESS
T ss_pred CCcEEEEEe-CcEEEEECC
Confidence 567899999 588888863
No 86
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=35.68 E-value=18 Score=26.33 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=16.9
Q ss_pred CCcccCCeEEEEeCcEEEEEEec
Q 031533 122 DNANVDKISALCQDGVLTVTVEK 144 (158)
Q Consensus 122 ~~vd~~~i~A~~~~GiL~I~lpK 144 (158)
+.+..++-.+.|.||+|+|.++-
T Consensus 67 e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred hhcCccccccccccceEEEEecC
Confidence 34444555678999999999974
No 87
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=35.54 E-value=32 Score=21.19 Aligned_cols=15 Identities=20% Similarity=0.620 Sum_probs=10.0
Q ss_pred EEEECCCCcccCCeE
Q 031533 116 RKFVLPDNANVDKIS 130 (158)
Q Consensus 116 r~~~LP~~vd~~~i~ 130 (158)
+++.||.+++.+.++
T Consensus 25 ksy~lp~ef~~~~L~ 39 (61)
T PF07076_consen 25 KSYKLPEEFDFDGLK 39 (61)
T ss_pred CEEECCCcccccccC
Confidence 356688777776654
No 88
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=35.11 E-value=49 Score=22.53 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.2
Q ss_pred CCeEEEEeCcEEEEEEec
Q 031533 127 DKISALCQDGVLTVTVEK 144 (158)
Q Consensus 127 ~~i~A~~~~GiL~I~lpK 144 (158)
..+.+.+.+|+|+|+++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 357899999999999964
No 89
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=33.09 E-value=46 Score=22.53 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=14.2
Q ss_pred CeEEEEeCcEEEEEEec
Q 031533 128 KISALCQDGVLTVTVEK 144 (158)
Q Consensus 128 ~i~A~~~~GiL~I~lpK 144 (158)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 36777889999999985
No 90
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=32.62 E-value=44 Score=22.74 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=14.4
Q ss_pred eEEEEeCcEEEEEEecC
Q 031533 129 ISALCQDGVLTVTVEKV 145 (158)
Q Consensus 129 i~A~~~~GiL~I~lpK~ 145 (158)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 67888999999999853
No 91
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=31.90 E-value=1.1e+02 Score=19.69 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=27.0
Q ss_pred CCceEEEEeeecceEEEEEECCCCcccCC-eEEEEeCcEEE-EEE
Q 031533 100 DGVKYVRMERRFGKFMRKFVLPDNANVDK-ISALCQDGVLT-VTV 142 (158)
Q Consensus 100 ~~~~~~~~e~~~~~f~r~~~LP~~vd~~~-i~A~~~~GiL~-I~l 142 (158)
..+.|......+--|.|.|.+|+...+.. +.-.+.+|.+. |.-
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 44666666666667899999999987776 47778766544 543
No 92
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=31.37 E-value=1.8e+02 Score=20.05 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=23.9
Q ss_pred eEEEEEECCCCc-ccCCeEEEEeCcEEEEEEecCCCCCCeeEEEee
Q 031533 113 KFMRKFVLPDNA-NVDKISALCQDGVLTVTVEKVPPPQPKTIQVQV 157 (158)
Q Consensus 113 ~f~r~~~LP~~v-d~~~i~A~~~~GiL~I~lpK~~~~~~~~i~I~~ 157 (158)
+|..-|....++ +...++-.+++.+|-...|+.. .++|.|+.
T Consensus 45 tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~~---~~~I~Vq~ 87 (113)
T cd01759 45 TYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKVG---AEKITVQS 87 (113)
T ss_pred EEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeEE---EEEEEEEe
Confidence 555566566555 4444566667776654444433 25677764
No 93
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=30.56 E-value=87 Score=22.79 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=17.9
Q ss_pred ECCCCcccCCeEEEEeCcEEEEEEecC
Q 031533 119 VLPDNANVDKISALCQDGVLTVTVEKV 145 (158)
Q Consensus 119 ~LP~~vd~~~i~A~~~~GiL~I~lpK~ 145 (158)
.=|+.|-+..-.....+|-++++||+.
T Consensus 150 ~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 150 ENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 456666666545555788899999863
No 94
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=28.38 E-value=1.8e+02 Score=19.15 Aligned_cols=32 Identities=6% Similarity=0.191 Sum_probs=27.9
Q ss_pred cceEEEEEECCCCcccCCeEEEEeCcEEEEEE
Q 031533 111 FGKFMRKFVLPDNANVDKISALCQDGVLTVTV 142 (158)
Q Consensus 111 ~~~f~r~~~LP~~vd~~~i~A~~~~GiL~I~l 142 (158)
.....-+|+||..+....+...+...-|+|.+
T Consensus 14 ~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 14 MDEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred cCEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 44567788999999999999999999999987
No 95
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=27.59 E-value=47 Score=22.30 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.6
Q ss_pred EEEEeCcEEEEEEec
Q 031533 130 SALCQDGVLTVTVEK 144 (158)
Q Consensus 130 ~A~~~~GiL~I~lpK 144 (158)
.+.+.+|||+|+++.
T Consensus 30 D~e~~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYSSGVLTLELPS 44 (97)
T ss_pred ccccCCCEEEEEECC
Confidence 567789999999965
No 96
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=27.17 E-value=92 Score=19.09 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=21.2
Q ss_pred CCeEEEEEEcCCCCCCCe-EEEEecCcEEEEE
Q 031533 56 PNSYVFIVDMPGIKASEI-KVQVESENVLVVS 86 (158)
Q Consensus 56 ~d~y~i~~~lPG~~~~~i-~V~~~~~~~L~I~ 86 (158)
.+.|.|.+..||+.+... .|.+..+....+.
T Consensus 47 ~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~~ 78 (82)
T PF13620_consen 47 PGTYTLRVSAPGYQPQTQENVTVTAGQTTTVD 78 (82)
T ss_dssp SEEEEEEEEBTTEE-EEEEEEEESSSSEEE--
T ss_pred CEeEEEEEEECCcceEEEEEEEEeCCCEEEEE
Confidence 367999999999988887 5777755555443
No 97
>PF11741 AMIN: AMIN domain; InterPro: IPR021731 This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localises to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localisation of periplasmic protein complexes []. ; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity
Probab=25.56 E-value=1.8e+02 Score=18.28 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=17.5
Q ss_pred ceEEEEEECCCCcccCCeEEEEeCcEEEEEE
Q 031533 112 GKFMRKFVLPDNANVDKISALCQDGVLTVTV 142 (158)
Q Consensus 112 ~~f~r~~~LP~~vd~~~i~A~~~~GiL~I~l 142 (158)
+..+-.+.|...+.+ +..-.++-|.|.|
T Consensus 68 ~~~Rvvi~l~~~~~y---~~~~~~~~l~i~l 95 (95)
T PF11741_consen 68 DTVRVVIDLKGPASY---KVSQSGNGLVIDL 95 (95)
T ss_pred CEEEEEEEcCCCccc---eeEeeCCEEEEEC
Confidence 346777888776655 3445666666653
No 98
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=25.49 E-value=1.9e+02 Score=18.46 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEecCc
Q 031533 56 PNSYVFIVDMPGIKASEIKVQVESEN 81 (158)
Q Consensus 56 ~d~y~i~~~lPG~~~~~i~V~~~~~~ 81 (158)
++...|...+-||-+.+|.|....++
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g 39 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDG 39 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECC
Confidence 46789999999999999999998433
No 99
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=24.78 E-value=2.1e+02 Score=18.75 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=26.1
Q ss_pred EEEeCCeEEEEEEc-CCCCCCCeEEEEecC--cEEEEEEEEec
Q 031533 52 VMEYPNSYVFIVDM-PGIKASEIKVQVESE--NVLVVSGERKR 91 (158)
Q Consensus 52 i~e~~d~y~i~~~l-PG~~~~~i~V~~~~~--~~L~I~g~~~~ 91 (158)
|.++++.+.|.+.+ ||.+++.|. -++ + +.|.|+-.-..
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i~-g~~-~~~~~Lki~v~ApP 41 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSIV-GYN-EWRKRVEVKIKAPP 41 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCcceec-ccc-CCCCeEEEEEecCC
Confidence 35678888888888 888888774 345 4 56777754433
No 100
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=21.48 E-value=1.3e+02 Score=22.42 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=24.5
Q ss_pred eeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEE
Q 031533 50 ADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSG 87 (158)
Q Consensus 50 ~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g 87 (158)
+++...+=.=-|.+.+||+..+.+.++.. |..|.=.|
T Consensus 7 MNVLY~G~~NpisIsvpgv~~~~v~~s~~-ggsl~~~g 43 (181)
T PF12080_consen 7 MNVLYRGVDNPISISVPGVPSNKVPASAT-GGSLSKSG 43 (181)
T ss_pred cceEecCCCCcEEEEeCCCCccccEEEee-CCEEEecC
Confidence 44444444445788899999999998887 44444333
No 101
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=21.36 E-value=82 Score=19.26 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.1
Q ss_pred CCCCCeEEEEecCcEEEEEEEEe
Q 031533 68 IKASEIKVQVESENVLVVSGERK 90 (158)
Q Consensus 68 ~~~~~i~V~~~~~~~L~I~g~~~ 90 (158)
++++.|.+.... +.|.|+|+.-
T Consensus 23 f~~~~I~l~t~~-g~l~I~G~~L 44 (66)
T PF07873_consen 23 FDDEEIRLNTKK-GKLTIKGEGL 44 (66)
T ss_dssp EETTEEEEEETT-EEEEEEEEEE
T ss_pred ECCCEEEEEeCC-EEEEEECceE
Confidence 467888888884 7999998753
No 102
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=21.13 E-value=3.1e+02 Score=19.82 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=23.6
Q ss_pred eCCeEEEEEEcCCC---CCCCeEEEEecCcEE
Q 031533 55 YPNSYVFIVDMPGI---KASEIKVQVESENVL 83 (158)
Q Consensus 55 ~~d~y~i~~~lPG~---~~~~i~V~~~~~~~L 83 (158)
-.+.|++.+.+|.+ ....|.|.+.-|+.+
T Consensus 47 ~~N~yt~~~~aPd~~~~pag~V~v~v~~~g~~ 78 (142)
T PF14545_consen 47 WENPYTLQFKAPDFCLEPAGSVNVRVYCDGVS 78 (142)
T ss_pred EECCEEEEEECchhcCCCCceEEEEEEECCEE
Confidence 35689999999999 889999999944433
No 103
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=20.68 E-value=2.5e+02 Score=20.09 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=20.9
Q ss_pred EEEEECCCCcccCCeEEEEeCcEEEEEEecC
Q 031533 115 MRKFVLPDNANVDKISALCQDGVLTVTVEKV 145 (158)
Q Consensus 115 ~r~~~LP~~vd~~~i~A~~~~GiL~I~lpK~ 145 (158)
.-++.-|+++ .+.++...++|.|.|...+.
T Consensus 22 ~v~v~~~~~l-~~~i~~~v~~g~L~I~~~~~ 51 (181)
T PF10988_consen 22 SVEVEADENL-LDRIKVEVKDGTLKISYKKN 51 (181)
T ss_dssp EEEEEEEHHH-HCCEEEEEETTEEEEEE-SC
T ss_pred EEEEEEChhh-cceEEEEEECCEEEEEECCC
Confidence 3445555544 57788888999999999854
No 104
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=20.65 E-value=2.5e+02 Score=18.21 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=22.7
Q ss_pred eCCeEEEEEEcCCCCCCCeEEEEe-cCcE
Q 031533 55 YPNSYVFIVDMPGIKASEIKVQVE-SENV 82 (158)
Q Consensus 55 ~~d~y~i~~~lPG~~~~~i~V~~~-~~~~ 82 (158)
.++...|..-+-||-|.+|.|... ||..
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~ 41 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQV 41 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEE
Confidence 345688999999999999999998 5433
No 105
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=20.50 E-value=1.7e+02 Score=20.90 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=21.2
Q ss_pred CCCCCCCeEEEEecCcEEEEEEEEecC
Q 031533 66 PGIKASEIKVQVESENVLVVSGERKRD 92 (158)
Q Consensus 66 PG~~~~~i~V~~~~~~~L~I~g~~~~~ 92 (158)
.|+...++.|.+.+ +.++++|.....
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEEeCCH
Confidence 57778889999995 799999988754
No 106
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=20.07 E-value=3.9e+02 Score=20.08 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=16.9
Q ss_pred CCCCCeEEEEecCcEEEEEEE
Q 031533 68 IKASEIKVQVESENVLVVSGE 88 (158)
Q Consensus 68 ~~~~~i~V~~~~~~~L~I~g~ 88 (158)
+-|+.++|+++ ++.++++|.
T Consensus 10 ~~P~gV~V~i~-~~~v~vkGp 29 (178)
T COG0097 10 VIPAGVTVSIE-GQVVTVKGP 29 (178)
T ss_pred ecCCCeEEEEe-ccEEEEECC
Confidence 34889999999 689999975
Done!