RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 031533
(158 letters)
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 116 bits (292), Expect = 2e-34
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 9/108 (8%)
Query: 51 DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
D+ E +++V +D+PG K E+KV+VE VLV K ++ +R ER
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKE-------EEDDHGLRSERS 53
Query: 111 FGKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPPP--QPKTIQVQ 156
+ F RKFVLP+NA+ DK+ A +DGVLTVTV K+ PP +P+ IQ+Q
Sbjct: 54 YRSFSRKFVLPENADPDKVKASLKDGVLTVTVPKLEPPEKKPRRIQIQ 101
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 101 bits (253), Expect = 9e-29
Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 6/94 (6%)
Query: 51 DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
DV E ++YV D+PG K +IKV+VE + VL +SGER+ + +E++N Y+R ER
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVE-DGVLTISGEREEEEEEEEN-----YLRRERS 54
Query: 111 FGKFMRKFVLPDNANVDKISALCQDGVLTVTVEK 144
+G F R F LP++ + DKI A ++GVLT+T+ K
Sbjct: 55 YGSFSRSFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 98.1 bits (245), Expect = 2e-27
Identities = 43/94 (45%), Positives = 66/94 (70%), Gaps = 4/94 (4%)
Query: 51 DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
D E P ++VF D+PG+K ++KV+VE VL +SGERK++ ++K G + R+ER
Sbjct: 3 DWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKK----GDDWHRVERS 58
Query: 111 FGKFMRKFVLPDNANVDKISALCQDGVLTVTVEK 144
G+F+R+F LP+NA+ D++ A ++GVLTVTV K
Sbjct: 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 91.3 bits (227), Expect = 3e-24
Identities = 35/109 (32%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 49 PADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRME 108
P D+ E + Y ++PG+ +I++ VE N L + GER+ + +E + Y+R E
Sbjct: 42 PVDIEETDDEYRITAELPGVDKEDIEITVE-GNTLTIRGEREEEEEE----EEEGYLRRE 96
Query: 109 RRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPPPQPKTIQVQV 157
R +G+F R F LP+ + + I A ++G+LTVT+ K P + K ++++
Sbjct: 97 RAYGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEPEEKKPKRIEI 145
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 77.9 bits (193), Expect = 1e-19
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 50 ADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMER 109
D+ E + Y+ D+PG K +IK+ + + L +S +R EKD K Y+R ER
Sbjct: 3 TDIKETDDEYIVEADLPGFKKEDIKLDYK-DGYLTISAKRDESKDEKDKKG--NYIRRER 59
Query: 110 RFGKFMRKFVLPDNANVDKISALCQDGVLTVTVEK 144
+G F R F LP N + ++I A ++GVL +T+ K
Sbjct: 60 YYGSFSRSFYLP-NVDEEEIKAKYENGVLKITLPK 93
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 73.8 bits (182), Expect = 3e-18
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 13/91 (14%)
Query: 54 EYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGK 113
+ + V VD+PG+K +IKV+VE +NVL +SG+R+ + + ER +G+
Sbjct: 3 QTDDEVVVTVDLPGVKKEDIKVEVE-DNVLTISGKREEEEE------------RERSYGE 49
Query: 114 FMRKFVLPDNANVDKISALCQDGVLTVTVEK 144
F R F LP++ + +K A ++GVL +T+ K
Sbjct: 50 FERSFELPEDVDPEKSKASLENGVLEITLPK 80
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 50.2 bits (121), Expect = 4e-09
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 13/89 (14%)
Query: 57 NSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMR 116
+ +D+ G K E+KV+V S+N LVV G+ + E++++ G YV E F R
Sbjct: 7 EKFQVTLDVKGFKPEELKVKV-SDNKLVVEGKHE----EREDEHG--YVSRE-----FTR 54
Query: 117 KFVLPDNANVDKI-SALCQDGVLTVTVEK 144
++ LP+ + D + S+L DGVLT+ K
Sbjct: 55 RYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 44.8 bits (107), Expect = 6e-07
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 57 NSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMR 116
N+Y + + G +++++VE N L V+G++ +++N++ +Y+ F R
Sbjct: 11 NNYRITLAVAGFSEDDLEIEVE-NNQLTVTGKK----ADEENEER-EYLHRGIAKRAFER 64
Query: 117 KFVLPDNANVDKISALCQDGVLTVTVEK 144
F L D+ V A ++G+LT+ +E+
Sbjct: 65 SFNLADHVKVKG--AELENGLLTIDLER 90
>gnl|CDD|235586 PRK05738, rplW, 50S ribosomal protein L23; Reviewed.
Length = 92
Score = 32.4 bits (75), Expect = 0.023
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 52 VMEYPNSYVFIVDM----PGIKAS--EI-KVQVESENVLVVSGERKR 91
+ME N YVF V P IKA+ ++ V+VES N L V G+ KR
Sbjct: 16 LMEKQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKR 62
>gnl|CDD|223167 COG0089, RplW, Ribosomal protein L23 [Translation, ribosomal
structure and biogenesis].
Length = 94
Score = 30.6 bits (70), Expect = 0.10
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 53 MEYPNSYVFIVDM----PGIKAS--EI-KVQVESENVLVVSGERKR 91
ME N YVFIVD P IKA+ E+ V+VE N L G+ KR
Sbjct: 18 MEKENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKR 63
>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in
alphaA-crystallin (HspB4), alphaB-crystallin (HspB5),
and the small heat shock protein (sHsp) HspB6, also
known as Hsp20. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 on the other hand is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. HspB5's functions
include effects on the apoptotic pathway and on
metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5 is
protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract this
effect. It is an autoantigen in the pathogenesis of
various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related myopathy.
Mutations in HspB4 have been associated with Autosomal
Dominant Congenital Cataract (ADCC). HspB6 (Hsp20) is
ubiquitous and is involved in diverse functions
including regulation of glucose transport and
contraction of smooth muscle, in platelet aggregation,
in cardioprotection, and in the prevention of apoptosis.
It interacts with the universal scaffolding and adaptor
protein 14-3-3, and also with the proapoptotic protein
Bax.
Length = 83
Score = 29.0 bits (65), Expect = 0.35
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 56 PNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFM 115
+ + +D+ E+ V+V + V + K ++ +D ++ E F
Sbjct: 6 KDRFSVNLDVKHFSPEELSVKVLGDFVEI-------HGKHEERQDEHGFISRE-----FH 53
Query: 116 RKFVLPDNANVDKI-SALCQDGVLTVTVEK 144
R++ LP + I S+L DGVLT++ +
Sbjct: 54 RRYRLPPGVDPAAITSSLSADGVLTISGPR 83
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts with
a large number of different proteins. It is found in
many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation of
actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked to
several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated state
is a high molecular weight aggregated form (100-800kDa)
composed of up to 24 subunits, which forms as a result
of multiple interactions within the ACD, and is required
for chaperone function and resistance to oxidative
stress. Upon phosphorylation these large aggregates
rapidly disassociate to smaller oligomers and chaperone
activity is modified. High constitutive levels of Hsp27
have been detected in various cancer cells, in
particular those of carcinoma origin. Over-expression of
Hsp27 has a protective effect against various
diseases-processes, including Huntington's disease.
Mutations in Hsp27 have been associated with a form of
distal hereditary motor neuropathy type II and
Charcot-Marie-Tooth disease type 2.
Length = 86
Score = 29.0 bits (65), Expect = 0.36
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 114 FMRKFVLPDNANVDKI-SALCQDGVLTV 140
F RK+ LP + + S+L DG+LTV
Sbjct: 55 FTRKYTLPPGVDPTAVTSSLSPDGILTV 82
>gnl|CDD|215313 PLN02575, PLN02575, haloacid dehalogenase-like hydrolase.
Length = 381
Score = 29.8 bits (67), Expect = 0.51
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 1 MDLRSLAGLDSPFFSILEDVLELPEEQEKTRNNPSRAYVRD 41
+DL++LA ++SP F E EL E+E+ R PS A V D
Sbjct: 340 VDLKNLADIESPEFGPPE--PELEMEKEEDRELPSSAGVDD 378
>gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 430
Score = 28.8 bits (65), Expect = 1.2
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 14 FSILEDV-LELPEEQEKTRN------NPSRAYVRDAKAMAATPADVMEYPNSY--VFIV- 63
F+I +DV + L ++E+ + + +D + T +M + V I+
Sbjct: 41 FAISDDVHVVLHHQKERIKEAVLEYFPGVIFHTQDLENYPGTGGALMGIEPKHERVLILN 100
Query: 64 -DMPGIKASEIKVQVESENVLVVSGERKRDPK 94
DMP ++ E++ +E++ +V+S DPK
Sbjct: 101 GDMPLVEKDELEKLLENDADIVMSVFHLADPK 132
>gnl|CDD|144021 pfam00276, Ribosomal_L23, Ribosomal protein L23.
Length = 90
Score = 26.9 bits (60), Expect = 1.8
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 53 MEYPNSYVFIVDMPGIKASEIK--------VQVESENVLVVSGERKRDPKEKDNKDGVK- 103
+E PN YVFIVD K EIK V+VE N L++ G+ KR+ + K K
Sbjct: 16 LEKPNQYVFIVDKKANKT-EIKDAVEHIFGVKVEKVNTLILPGKVKRNGQYLGRKKSYKK 74
Query: 104 -YVRME 108
V +E
Sbjct: 75 AIVTLE 80
>gnl|CDD|215644 PLN03243, PLN03243, haloacid dehalogenase-like hydrolase;
Provisional.
Length = 260
Score = 27.3 bits (60), Expect = 3.7
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 1 MDLRSLAGLDSPFFSILEDVLELPEEQE 28
+DL++L+ LDSP F I E LE E+E
Sbjct: 233 VDLKNLSDLDSPEFQIPEPQLEEEVEEE 260
>gnl|CDD|240432 PTZ00477, PTZ00477, rhoptry-associated protein; Provisional.
Length = 524
Score = 27.4 bits (61), Expect = 4.1
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 20/71 (28%)
Query: 83 LVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTV 142
L V RKR R+ FGK + K + K+SAL D +L
Sbjct: 261 LTVGNYRKRH-------------RLANYFGK-LAKHAVMKTMGYKKVSALMADQLLEY-- 304
Query: 143 EKVPPPQPKTI 153
PP P
Sbjct: 305 ----PPDPMDF 311
>gnl|CDD|233554 TIGR01739, tegu_FGAM_synt, herpesvirus tegument
protein/v-FGAM-synthase. This model describes a family
of large proteins of herpesvirues. The protein is
described variably as tegument protein or
phosphoribosylformylglycinamidine synthase
(FGAM-synthase). Most of the length of the protein shows
homology to eukaryotic FGAM-synthase. Functional
characterizations were not verified during construction
of this model.
Length = 1202
Score = 27.3 bits (61), Expect = 4.7
Identities = 4/38 (10%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 111 FGKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPPP 148
+R + + ++AL + + +P
Sbjct: 332 IVGSIRPLGPC--SVKEHLTALLPPCGAELDLSNLPDE 367
>gnl|CDD|240812 cd12366, RRM1_RBM45, RNA recognition motif 1 in RNA-binding protein
45 (RBM45) and similar proteins. This subfamily
corresponds to the RRM1 of RBM45, also termed
developmentally-regulated RNA-binding protein 1 (DRB1),
a new member of RNA recognition motif (RRM)-type neural
RNA-binding proteins, which expresses under
spatiotemporal control. It is encoded by gene drb1 that
is expressed in neurons, not in glial cells. RBM45
predominantly localizes in cytoplasm of cultured cells
and specifically binds to poly(C) RNA. It could play an
important role during neurogenesis. RBM45 carries four
RRMs, also known as RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains). .
Length = 81
Score = 25.8 bits (57), Expect = 4.7
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 56 PNSYVFIVDMPGIKASEIKVQVES----ENVLVVSGERKRDPKEKDNKDGVKYVRMER 109
PNS +FIV + +++ +++ VV +D + K++K GV YV+ +
Sbjct: 2 PNSRLFIVCGKSVTEDDLREAFAPFGEIQDIWVV-----KDKQTKESK-GVAYVKFAK 53
>gnl|CDD|193548 cd05673, M20_Acy1L2_AbgB, M20 Peptidase Aminoacylase 1-like protein
2 aminobenzoyl-glutamate utilization protein B
subfamily. Peptidase M20 family, ACY1L2
aminobenzoyl-glutamate utilization protein B (AbgB)
subfamily. This group contains mostly bacterial
amidohydrolases, including gene products of abgB that
catalyze the cleavage of p-aminobenzoyl-glutamate, a
folate catabolite in Escherichia coli, to
p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate
is a natural end product of folate catabolism, and its
utilization is initiated by the abg region gene product,
AbgT, by enabling uptake of its into the cell in a
concentration-dependent, saturable manner. It is
subsequently cleaved by AbgA and AbgB (sometimes
referred to as AbgAB).
Length = 434
Score = 26.7 bits (60), Expect = 6.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 42 AKAMAATPADVMEYP 56
AK +A T D++ P
Sbjct: 410 AKVLALTALDLLTDP 424
>gnl|CDD|147308 pfam05059, Orbi_VP4, Orbivirus VP4 core protein. Orbiviruses are
double stranded RNA retroviruses of which the bluetongue
virus is a member. The core of bluetongue virus (BTV) is
a multienzyme complex composed of two major proteins
(VP7 and VP3) and three minor proteins (VP1, VP4 and
VP6) in addition to the viral genome. VP4 has been shown
to perform all RNA capping activities and has both
methyltransferase type 1 and type 2 activities
associated with it.
Length = 642
Score = 26.6 bits (59), Expect = 7.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 89 RKRDPKEKDNKDGVKYVRMERRFGKFMRKFVL 120
R D KE + G + VR+ ++FG +R +
Sbjct: 95 RDHDMKEFETLIGRRRVRLRKKFGDILRNYAF 126
>gnl|CDD|216500 pfam01432, Peptidase_M3, Peptidase family M3. This is the Thimet
oligopeptidase family, large family of mammalian and
bacterial oligopeptidases that cleave medium sized
peptides. The group also contains mitochondrial
intermediate peptidase which is encoded by nuclear DNA
but functions within the mitochondria to remove the
leader sequence.
Length = 450
Score = 26.6 bits (59), Expect = 7.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 16 ILEDVLELPEEQEKTRNNPSRAYVRDAKAMAATPADVME 54
+LE++L+L E K PS A MA P V +
Sbjct: 34 LLEELLKLRAELAKLLGYPSYAEASLEDKMAKIPETVYD 72
>gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily.
The alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 522
Score = 26.4 bits (59), Expect = 8.0
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 36 RAYVRDAKAMAAT-PAD-VMEYPNSYVFIVDMPGIKASEIKVQV 77
R + A A T D V Y ++DM I+ S +++ V
Sbjct: 172 RIPLEAALASGYTHRHDFVTPYVADLGNVIDMDAIRKSGLRLGV 215
>gnl|CDD|226224 COG3701, TrbF, Type IV secretory pathway, TrbF components
[Intracellular trafficking and secretion].
Length = 228
Score = 25.9 bits (57), Expect = 9.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 13 FFSILEDVLELPEEQEKTRNNPSRAYVRD 41
+ +IL VL+ P ++E+ R NP +V D
Sbjct: 191 WTAILTTVLQTPVDEERLRINPLGIFVND 219
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.370
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,091,270
Number of extensions: 727750
Number of successful extensions: 804
Number of sequences better than 10.0: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 38
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)